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CMLR Specimen Occurrence Template
CMLR Specimen Occurrence Template
Explanation Use a unique record UQCMLR. This is Collection date. The name of the Scientific name of the The full
identifier from the source registered with Preferred to observer, organism. Inserting the scientific
data. This will be used Biodiversity use Australian collector, correct 'scientificName' name of
for use on barcode. Use Collections Index. standard of photographer etc, should enable the family
barcode with sequential See: DD/MM/YYYY can be a group or automatic population of in which
numbers comprised of http://www.biodivers recommended organisation name the fields mentioned the taxon
six-digit number 000001 itycollectionsindex.o in Style Manual if individuals do above and below to is
URL http://rs.tdwg.org/dwc/terms/index.htm#catalogNumber
– 999999. Eg. rg/collection/view/id/ http://rs.tdwg.org/dwc/terms/index.htm#eventDate
http://rs.tdwg.org/dwc/terms/index.htm#collectionID
for Authors http://rs.tdwg.org/dwc/terms/index.htm#recordedBy
not want their maintain a controlled http://
http://rs.tdwg.org/dwc/terms/index.htm#scienti
classified.
UQCMLR000001 35307 Editors and name shared vocabulary and rs.tdwg.
Printers (6th nomenclature.
Ed.), Preferable to fill out org/
nameAccordingToID to dwc/
show nomenclature terms/
source. index.ht
m#famil
y
Priority Required Required Required Required Required Required
Data format Text Text Date Text Text Text
(DD/MM/YY
YY)
Example UQCMLR000001 UQCMLR 260 BC Theophrastus Ficus benghalensis
decimalLatitude decimalLongitude geodeticDatum coordinatePrecision locality
The geographic latitude in The geographic longitude The datum of the The precision of the decimal The specific description
decimal degrees (DD) of in decimal degrees (DD) of coordinates. Examples: coordinates as decimal value of the place.
the geographic centre of the geographic centre of a "WGS84" "GDA94". If the less than 1 e.g. 0.001 for
a location (eg. - location (eg. 153.0145). geodetic datum unknown coordinates accurate to three
27.5005).Positive values Use the spatial reference then additional 200m plus decimal places. N.B. be
are north of the Equator, system given in spatial error may apply. careful with coordinates
negative values are south geodeticDatum (eg converted from D:M:S they can
http://rs.tdwg.org/dwc/terms/index.htm#decimalLatitude
of it. Legal values lie GDA94, WGS84). Positive http://rs.tdwg.org/dwc/terms/index.htm#geodeticDatum
http://rs.tdwg.org/dwc/terms/index.htm#decimalLongitude
http://rs.tdwg.org/dwc/terms/index.htm#coordinatePrecision
have a lot of decimal places http://rs.tdwg.org/dwc/terms/index.htm
between -90 and 90, values are east of the that are not warranted by the
inclusive. If you only have Greenwich Meridian, original coordinates.
UTM coordinates (eg. negative values are west of Examples: "0.0001" (normal
easting and northing), it. Legal values lie between handheld GPS limit for decimal
please convert to DD. -180 and 180, inclusive. If degrees), "0.001" (= 111m;
See tab in this you only have UTM good map reading or estimate
spreadsheet 'Coordinate coordinates (eg. easting from Google Earth aerial
conversion'. and northing), please photo), "0.01" (= 1.1km; coarse
convert to DD. See tab in map reading or coarse
Required Required
this workbook 'Coordinate
Required Required
estimate from Google Earth
Required
Numeric (typically to 4 Numeric (typically to 4 Text - drop down list Text
conversion'. - dropSee
aerial photo). down listthis Text
tab in
decimal places - see decimal places - see workbook 'Coordinate
'coordinatePrecision'; 'coordinatePrecision'; conversion'.
negative numbers negative numbers
permitted) -33.104 prohibited) 150.0349 WGS84 0.0001 Mount Airly, Caperte
minimumElevationInMeters stateProvince country higherGeographyID basisOfRecord
The lower limit of the range of elevation The name of the next The name of the An identifier for the geographic The specific nature of
(altitude, usually above sea level), in smaller administrative country or major region within which the the data record
meters. region than country administrative Location occurred. Use
(state, province, unit in which the Australian bioregions (IBRA
canton, department, Location occurs. V.7) - see go 'Bioregion' tab on
region, etc.) in which this spreadsheet where you
the Location occurs. can search your area.
http://rs.tdwg.org/dwc/terms/index.htm#minimumElevationInMeters
http://rs.tdwg.org/dwc/terms/index.htm#stateProvince
http://rs.tdwg.org/dwc/terms/index.htm#country
http://rs.tdwg.org/dwc/terms/index.htm#higherGeographyID
http://rs.tdwg.org/dwc/terms/index.ht
Airly Coal Mine Atlas of NSW Wildlife - Cen T00789 Treeless sandstone heath. Domi
CMLR site code establishmentMeans RevegetationStatus ConservationStatus
Link to site code from where a plant The process by which the Planted site-indigenous species,
Rare or threatened species in one
collection came from (eg. MP007 - a biological individual(s) planted non-indigenous Australian
or more States or in Australia.
site on the Newnes Plateau). This represented in the Occurrence native, planted exotic species. Only
Such a list would need to be
will need to be made unique to the became established at the fill out if there is clear evidence the
prepared from a number of
site against other sites if it will be location. specimen has been planted.
sources (eg. ROTAP list, EPBC
used as primary or foreign key. Act, TSC Act, IUCN Red List,
CITES). This could be a link to
Not defined in Darwin Core - http://rs.tdwg.org/dwc/terms/index.htm#establishmentMeans
Not defined in Darwin Core Not defined
relevent in or
websites Darwin Core
to the list
additional from CMLR - additional from CMLR Caitlin and Eddie
- additional have
from prepared.
CMLR
NOT YET RESOLVED
http://rs.tdwg.org/dwc/terms/index.htm#identificationreferences
http://rs.tdwg.org/dwc/terms/index.htm#identifiedby
http://rs.tdwg.org/dwc/terms/index.htm#individualCount
http://rs.tdwg.org/dwc/terms/index.htm#dcterms:modified
http://rs.tdwg.org/dwc/terms/index.htm#fieldNumber http://rs.tdwg.org/dwc/terms/index.htm#occurrenceRemarks
Optional Optional
Text Text
locationExtent samplingProtocol
If the location is not a point (e.g. a 10m square), the size of the area as a radius in metres. The horizontal A short description of the
distance (in meters) from the given decimalLatitude and decimalLongitude describing the smallest circle survey method or a link
containing the whole of the actual location or sampling sites. It does NOT include other error distance (URL) to a detailed
assoctaied with coordinatePrecision and datum. The extent of the actual location. Not yet defined in description
Darwin Core although referred to in georeferencing tools.
Optional Optional
Numeric Text or hyperlink
coordinateUncertaintyInMeters georeferenceProtocol georeferencedBy
The radius of a circle providing the A description or reference to the methods used Who captured the
uncertainty of the coordinates (includes all to determine the spatial footprint, coordinates, coordinates (either at the
potential error introduced by datum shift, and uncertainties. E.g. GPS set to WGS1984 time of the observation or
extent and precision of coordinates). Leave used. Useful for estimate coordinateprecision in later from a description)
blank if unknown. not explicitly records
http://rs.tdwg.org/dwc/terms/ http://rs.tdwg.org/dwc/terms/index.htm#georeferenceprotocol
http://rs.tdwg.org/dwc/terms/index.htm#georeferen
index.htm#coordinateuncertaintyin
meters
GPS (WGS84)
georeferenceSources georeferenceVerificationStatus associatedMedia
Maps or gazetteers used Has the georeference been verified Indicate a URL for an assoicated
(particularly for georeferencing of location photo, movie or sound recording or,
descriptions). Examples: "requires if they are in an attached zip of
verification", "verified by collector", "verified by media files indicate the specific file
curator". name
http://rs.tdwg.org/dwc/terms/index.htm#georeferenceSources
http://rs.tdwg.org/dwc/terms/index.htm#georeferenceVerificationStatus
http://rs.tdwg.org/dwc/terms/index.htm#associatedMedia
photo
dataGeneralizations SpecimenPhoto
Actions taken to make the shared data less specific or complete than in Link to folder containing one or more
its original form (eg. used for an endangered orchid). Suggests that plant photos. This might be from images
alternative data of higher quality may be available on request.Essential generated from the field or microscope.
to know if data have been intentionally generalised. Should feed into Over time, more files can be added to
maximum uncertainty distance. the folder
http://rs.tdwg.org/dwc/terms/index.htm#dataGeneralizations
Not defined in Darwin Core -
additional from CMLR
Optional Optional
Text Text or hyperlink
Duplicates MetalEnrichedSubstrate MetalTolerance HyperaccumulatorStatus
No, Yes: which herbarium? No - Yes: Zn, As, Cd, Pb, Cr, Cu, unknown - known: Zn, No - Yes: Zn, As, Cd, Pb, Cr, Cu, Ni,
Ni, Co As, Cd, Pb, Cr, Cu, Ni, Co
Co
Not defined in Darwin Not defined in Darwin Core Not defined in Not defined in Darwin Core -
Core - additional from - additional from CMLR Darwin Core - additional from CMLR
CMLR additional from
CMLR
Not defined in Darwin Core - additional from CMLR Not defined in Darwin Core - additional from
CMLR
Optional Optional
Text or hyperlink Text
verbatimCoordinatePrecision verbatimCoordinates
The coordinate precision if it was not initially Original representation of the coordinates if not split into latitude and longitude (e.g. grid
represented as a decimal value less than 1. e.g. reference). The verbatim original spatial coordinates of the Location. The coordinate
1 minute, 3 seconds, 500m. The terms beginning ellipsoid, geodeticDatum, or full Spatial Reference System (SRS) for these coordinates
with verbatim are meant to capture the original should be stored in verbatimSRS and the coordinate system should be stored in
record 'word for word'. verbatimCoordinateSystem.
Conditional Conditional
Numeric Numeric
verbatimCoordinateSystem verbatimCoordinateUncertainty
How the verbatim coordinates or latitude The coordinate uncertainty if not initially
and longitude are recorded - e.g. represented as an integer value in meters e.g.
decimal degrees, degrees minutes 1-10m, greater than 10km
seconds, UTM
http://rs.tdwg.org/dwc/terms/index.htm#verbatimCoordinateSystem
Not defined in Darwin Core - taken
from ALA-occurrence-data-template-
high-quality
Conditional Conditional
Text Text
verbatimLatitude
The original representation of the latitude (e.g. Degrees, Minutes). The verbatim
original latitude of the Location. The coordinate ellipsoid, geodeticDatum, or full Spatial
Reference System (SRS) for these coordinates should be stored in verbatimSRS and
the coordinate system should be stored in verbatimCoordinateSystem.Useful to know
when coordinates are in doubt.
http://rs.tdwg.org/dwc/terms/index.htm#verbatimLatitude
Conditional
Numeric
verbatimLongitude verbatimElevation verbatimLocality
The original representation of the longitude (e.g. Degrees, Minutes). The verbatim The original description of The original textual
original longitude of the Location. The coordinate ellipsoid, geodeticDatum, or full the elevation (altitude, description of the place.
Spatial Reference System (SRS) for these coordinates should be stored in usually above sea level) of Useful to know when
verbatimSRS and the coordinate system should be stored in the Location. coordinates are in doubt
verbatimCoordinateSystem. Useful to know when coordinates are in doubt.
http://rs.tdwg.org/dwc/terms/index.htm#verbatimSRS
http://rs.tdwg.org/dwc/terms/index.htm#vernacularName
Conditional Conditional
Text Text
Lifeform Explanation URL Priority
catalogNumber Use a unique record identifier from the source data. http://rs.tdwg.org/dwc/terms/index.htm#catalogNumber
Required
This will be used for use on barcode. Use barcode
with sequential numbers comprised of six-digit number
000001 – 999999. Eg. UQCMLR000001
family The full scientific name of the family in which the taxon http:// Required
is classified.
rs.tdwg.org/
dwc/terms/
decimalLatitude The geographic latitude in decimal degrees (DD) of index.htm#famil
http://rs.tdwg.org/dwc/terms/index.htm#decimalLatitude
Required
the geographic centre of a location (eg. -
27.5005).Positive values are north of the Equator,
negative values are south of it. Legal values lie
between -90 and 90, inclusive. If you only have UTM
coordinates (eg. easting and northing), please convert
to DD. See tab in this spreadsheet 'Coordinate
conversion'.
minimumElevationInMe
The lower limit of the range of elevation (altitude, http://rs.tdwg.org/dwc/terms/index.htm#minimumElevati
Required
usually above sea level), in meters.
stateProvince The name of the next smaller administrative region http://rs.tdwg.org/dwc/terms/index.htm#stateProvince
Required
than country (state, province, canton, department,
region, etc.) in which the Location occurs.
CMLRstudyArea Site name (eg North Stradbroke Island) Not defined in Required
Darwin Core -
additional from
CMLR
nameAccordingToID An identifier for the source in which the specific taxon http://rs.tdwg.org/dwc/terms/index.htm#nameAccording
Required
concept circumscription is defined or implied.
Lifeform Tree, shrub, herb, graminoid, scrambler, fern, Not defined in Optional
bryophyte, lichen - this would require CMLR to
populate this list.
Darwin Core -
additional from
CMLR
occurenceStatus A statement about the presence, absence and http://rs.tdwg.org/dwc/terms/index.htm#occurrenceStatu
Optional
abundance of a Taxon at a Location.
locationExtent If the location is not a point (e.g. a 10m square), the Not yet defined Optional
size of the area as a radius in metres. The horizontal
distance (in meters) from the given decimalLatitude
in Darwin Core
and decimalLongitude describing the smallest circle
containing the whole of the actual location or sampling
sites. It does NOT include other error distance
assoctaied with coordinatePrecision and datum. The
extent of the actual location. Not yet defined in Darwin
Core although referred to in georeferencing tools.
georeferencedBy Who captured the coordinates (either at the time of the http://rs.tdwg.org/dwc/terms/index.htm#georeferencedb
Optional
observation or later from a description)
dataGeneralizations Actions taken to make the shared data less specific or http://rs.tdwg.org/dwc/terms/index.htm#dataGeneralizat
Optional
complete than in its original form (eg. used for an
endangered orchid). Suggests that alternative data of
higher quality may be available on request.Essential to
know if data have been intentionally generalised.
Should feed into maximum uncertainty distance.
SpecimenPhoto Link to folder containing one or more plant photos. Not defined in Optional
This might be from images generated from the field or
microscope. Over time, more files can be added to the
Darwin Core -
folder additional from
CMLR
Duplicates No, Yes: which herbarium? Not defined in Optional
Darwin Core -
additional from
CMLR
MetalEnrichedSubstr No - Yes: Zn, As, Cd, Pb, Cr, Cu, Ni, Co Not defined in Optional
ate Darwin Core -
additional from
CMLR
MetalTolerance unknown - known: Zn, As, Cd, Pb, Cr, Cu, Ni, Co Not defined in Optional
Darwin Core -
additional from
CMLR
HyperaccumulatorSt No - Yes: Zn, As, Cd, Pb, Cr, Cu, Ni, Co Not defined in Optional
atus Darwin Core -
additional from
CMLR
Analytical results (for link spreadsheet or PDF of chemical analysis results Not defined in Optional
of plant material of this species'
hyperaccumulating Darwin Core -
plants) additional from
CMLR
References (for include references about the plant (e.g. Not defined in Optional
hyperaccumulations, germination experiments, etc.)
hyperaccumulating Darwin Core -
plants) additional from
CMLR
verbatimCoordinateP The coordinate precision if it was not initially Not defined in Conditional
represented as a decimal value less than 1. e.g. 1
recision minute, 3 seconds, 500m. The terms beginning with
Darwin Core -
verbatim are meant to capture the original record taken from ALA-
'word for word'. occurrence-
data-template-
high-quality
verbatimCoordinateU The coordinate uncertainty if not initially represented Not defined in Conditional
as an integer value in meters e.g. 1-10m, greater than
ncertainty 10km
Darwin Core -
taken from ALA-
occurrence-
data-template-
high-quality
verbatimLatitude The original representation of the latitude (e.g. http://rs.tdwg.org/dwc/terms/index.htm#verbatimLatitude
Conditional
Degrees, Minutes). The verbatim original latitude of
the Location. The coordinate ellipsoid, geodeticDatum,
or full Spatial Reference System (SRS) for these
coordinates should be stored in verbatimSRS and the
coordinate system should be stored in
verbatimCoordinateSystem.Useful to know when
coordinates are in doubt.
vernacularName Common name for the organism, not required if you http://rs.tdwg.org/dwc/terms/index.htm#vernacularName
Conditional
have a scientific name
Data format Example
Text UQCMLR000001
Text UQCMLR
Text Theophrastus
Text
Numeric 967
Text Australia
Text T00789
Text ROTAP: 2R
Text rare
Text species
Text
Text
Text
Text
Date (DD/MM/YYYY)
Text
Text
Numeric
Text or hyperlink
Text
Text
Text
Text
Text or hyperlink
Text
Text or hyperlink
Text
Numeric
Numeric
Text
Text
Numeric
Numeric
Numeric
Text
Text
Text
Priority use for use by CMLR Explanation
1 Required
2 Desirable
3 Optional
4 Conditional
EstablishmentMeans
Identifier English Term Alternative Terms
naturalised Naturalised
invasive Invasive
managed Managed cultivated
uncertain Uncertain unknown
Reference: https://spreadsheets.google.com/spreadsheet/pub?key=0Atnkg51vTagRdFZzLVVXTVhua0Q
This could also be an official list of the status of origin of plants generated by herbaria (eg native species, naturalised species, d
species, formally naturalised species, as specified by Census of the Queensland Flora 2010). (should be an automatic link from
'scientificName', depending on where the list is generated from).
occurenceStatus
dentifier English Term Alternative Terms
C; frequent;
common Common fairlyCommon
R; U; uncommon; CAS;
rare Rare casual
reported in error;
excluded Excluded misidentification
Reference: https://spreadsheets.google.com/spreadsheet/pub?key=0Atnkg51vTagRdFZzLVVXTVhua0Q
References used to build the Combined Darwin Core, CMLR and ALA spreadsh
DarwinCore Vocabularies
https://spreadsheets.google.com/spreadsheet/pub?key=0Atnkg51vTagRdFZzLVVXTVhua0Qzc2x3SUU4VDMzNnc&gid=0
Definition
There is at least one well
documented record of the taxons
presence in the area
Subclass of present: Species
observed frequently in most proper
habitat.
Subclass of present: Species occurs
regularly, but in small numbers.
Requires careful searching of proper
habitat.
Subclass of present: May be common
in certain years and entirely absent
other years.
nd ALA spreadsheet:
url=http%3A%2F%2Fwww.ala.org.au%2Fwp-content%2Fuploads%2F2010%2F06%2FALA-occurrence-data-template-high-quality.xls&ei=X
UU4VDMzNnc&gid=0
ate-high-quality.xls&ei=XgciUPa7Ms2UiAewsYHAAw&usg=AFQjCNHOtkzJj0Fta9W_gA8vTWMAb6zb0w
Coordinate conversion
To reduce confusion and translation errors, the CMLR Herbarium data entry spreadsheet will only accept one format (decimal d
If your data is in another format, please convert prior to entering into the spreadsheet.
For a few conversions, try one of the many online websites such as:
http://www.sunearthtools.com/dp/tools/conversion.php
OR
http://web.library.uiuc.edu/asp/max/DD2DMS.asp?dd=0.000278&submit=Convert+to+Degrees%B0+Minutes%27+Seconds%22
If you are converting GPS data into the correct format, see link for more details:
http://www.spiffa.org/uploads/2/6/7/5/2675656/a_guide_to_the_exchange_of_gps_data.pdf
Easting and Northing – These are the grid coordinates in MGA94 (earlier versions called AMG) displayed as:
Easting (E) (e.g. 342873)
Northing (N) (e.g. 5774343)
Geographical coordinates:
Latitude and longitude – These are the geographical coordinates displayed as:
Latitude or southing (S) (eg. -27.5005)
Longitude or easting (E) (eg. 153.0145)
There are a number of different formats used for lat-long such as DD, DMS, DDM.
Examples: "0.00001" (normal GPS limit for decimal degrees), "0.000278" (nearest second), "0.01667" (nearest minute), "1.0" (n
decimal
deg. degrees distance Record type
111.319
1 1°0’0" km Other
inutes%27+Seconds%22
es the further from the equator you get. The accuracy of the latitude remains almost unchanged.
is: (40075.1612 / 360) 111.319 km.
WGS84 0.0001 = 11m (normal handheld GPS limit for decimal degrees)
GDA94 0.001 = 111m (good map reading or good estimate from Google Earth aerial photo)
0.01 = 1.1km (coarse map reading or coarse estimate from Google Earth aerial photo)
0.1 = 11km (used for approximate specimen location where no coordinates were available)
1 = 111km (used for approximate specimen location where no coordinates were available)
0.00001 = 1m (differential GPS only)
stateProvince basisOfRecor CMLRstudyAr nameAccordi occurenceSta georeference georeference
d ea ngToID tus Protocol VerificationSt
atus
ACT Ensham
Greenvale
Gregory Mine
Kidston
Moura
Oaky Creek
Tarong
Taunton/Idalia
Weipa
Other
establishment Revegetation Lifeform MetalEnriched MetalToleranc Hyperaccumu
Means Status Substrate e latorStatus
unknown Not
hyperaccumula
native Planted site-ind Tree Not metal-enric tor
introduced Planted non-indiShrub Zn Zn Zn
naturalised Planted exotic sGraminoid As As As
invasive Herb Cd Cd Cd
Scrambler or Pb Pb Pb
uncertain climber
Bryophytes Cr Cr Cr
Lichen Cu Cu Cu
Fern and fern Ni Ni Ni
allies
Co Co Co