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3.1. Introduction
This section presents results that answer the following research questions raised in chapter1: i) to
identify the pool for spontaneous neurotransmission activity; ii) to identify the pool for evoked
neurotransmission activity; and iii) to identify the similarity and differences of the spontaneous
and evoked neurotransmission activities. For a brief reminder, the section will: identify the pool
for spontaneous neurotransmission activity; identify the pool for evoked neurotransmission
activity; and identify the similarity and differences of the spontaneous and evoked
neurotransmission activities.
3.2. pHoenix
Two conditions were observed in the pHoenix experiment. However, there was an observation of
thirty seconds order of pre-illumination order to obtain a succinct baseline and ensure that the
SVs were at the starting point. The first condition thus was to stimulate the cells and then
activate the pHoenix using light at the end of the ammonimpulse. The second paradigm involved
proton pumps were functionally expressed in synaptic vesicle membranes using the fluorescent
proteins mKate2, located in the cytosol, and pHluorin, located in the lumen, to show protein
expression and localisation, together with luminal acidification. When we realized that Arch3's C
terminus was positioned somewhat on cytosolic side, we inserted the transmembrane portion of
the gastric H+/K+ ATPase -subunit to conserve the hydrophobic topology (Rost et al., 2015).
Two paradigms were applied during the performance of this experiment. The first paradigm is an
exemplar that cells are first illuminated (to activate pHoenix) and then stimulated followed by
ammonium pulse. The second paradigm was an architype that cells are directly stimulated using
stimulation of certain strength. This is followed by illumination step (561nm laser light) to
activate pHoenix and at the end the ammonium pulse is given in order to visualize the total
number of SVs.
Bacterial Archaeordopsin-3 was placed between Helix three and Helix four of the
synaphopHluorin. pHluorin placed on the luminal side of the SVs was used to visualize pHoenix
terminus of Archaeordopsin extended towards the cytosolic side. betaHK was used to maintain
transmembrane morphology and control pHluorin uptake across the cell membrane. Age1 sites
Polystyrene tubes were used with 10cm plates of 1.88cc-dosed hypoccampal cells. A solution of
23.61 of Transit 293 reagent was incubated for 10minutes at room temperature. cDNA followed
the incubation process. . a mixture of 5 g of lentiviral construct, 2.5 g of pCMV R.8.2 Helper 2
(Pack), and 5 g of pM D2.G Helper 1 (ENV) added to the solution and incubated. The DNA was
titrated to the solution and then incubated with 5% CO2, for 72 hours at room temperature (Rost
et al., 2015).
the synaptic terminals were saturated by Glutamate transporter 1 (VGULT). Untargeted
Archaeordopsin3-pHluorin was not saturated. The image recordings were done at intervals of 1s.
the resulting pulses evoked 250 times smaller somatics of outward electro-currents in pHoenix-
expressing cells as compared to control cells. This indicated that pHoenix is mostly retained in
the cell culture. Optical quantification of pHluorin signals in pHluorin molecules signified the
presence of only a smaller percentage of pHoenix proteins in plasma membrane. It also indicated
the presence of vesicular PH14 and effective synaptic transmission (Rost et al., 2015).
stimulation
The main idea in the pHoenix RRP mobilization is in relationship to its ability to manipulate
multiple cellular activities when cells are exposed to light that when exposed. Phoenix-expressed
cells illuminated on 561nm laser light expand the porous holes of the synaptic cell membrane,
increasing the sensation of the pH by the pHluorin and V-GLUTI-6 transporter activities thus it
is easier to count the number of SVs (fig. 3.1A). After bafilomycin1 (Baf) has been applied to an
isolated cultured hippocampal neuron, endocytosis of SV requires the Baf inhibitor (Fernandez-
Alfonso & Ryan, 2004), and a cell-permeant inhibitor of V-type ATPase. A Baf-poisoned
vesicle, for example, is unable to reload after releasing its "quantum" of glutamate, hence it
Synaptic vesicles are recycled after the release of specific glutamate transporter. At the
neuromuscular junction, discoloration dye identified RRP and RP. In exocytosis, the SVs are
completely depleted. CD63-pHluorin provides a medium to estimate the size of pools and the
mobilization rate at the neuromuscular junction. To estimate the size of RRP and RP, the
recruitment of SVs from the RP required 561nm laser light illumination. Since sypHy1 is
at 10HZ were studied at room temperature. Upon nerve stimulation in synaptophysin, pHluorin
signals decline rapidly on first stimulus, slowly during subsequent 50 s, and then attained
steadiness. This indicated that pHluorin triggers rapid fusion of proteins across the
Based on a series of tests, this method was found to meet all three important requirements:
Figure 3-1: Each button in RRP has around 20 SVs. Each button in RRP has around 20 SVs. We hypothesize that a 20-
minute incubation of the cells in the presence of TTX (to inhibit recurrent activity) is sufficient to deplete the
majority of SVs resident in RRP. One vesicular synapse is released every 60-90 seconds during spontaneous
movement. B) Cross-depletion of experimental paradigms: 1) Cells are lighted first, then stimulated, and finally
exposed to an ammonium pulse. 2) following pre-illumination and pre-incubation, cells are stimulated directly with
a specific strength of stimulation. Following that, an illumination step (361nm laser light) is used to activate
pHoenix, and finally, an ammonium pulse is used to visualize the entire number of SVs; the amplitudes, denoted as
A1 and A2, are compared. If SVs are pooled together, we anticipate A1 and A2 to be distinct. C) It is expected that
when three different stimulation strengths are used, there will be differences in the amplitudes achieved. We
predicted that 50AP/10Hz (ref.) stimulation can demonstrate the greatest difference between A1 and A2, since this
To assess whether insufficient filling of glutamatergic vesicle release affects the release
activation of Phoenix under 561nm laser light illumination, SypHy-infected cells showed no
effect. Also on illumination under 488 nm laser light, the untreated neurons had no effect but
Both the control and pHoenix-expressed cells under 488nm laser light induction showed similar
changes in paired pulse ratio (PPR). Illumination did not have a differential effect on control
neurons. The light-activated proton pumping significantly increase the vesicular transmitter
accumulation shown by postsynaptic responses. The limited uptake of pHluorin shows that the
Vesicular release probability increase with vesicular filling. However, excessive accumulation
process other than leakage. Cross-depletion of synaptic vesicle pools is determined by the
trigger. In this experiment, we examined the cellular responses to pHoenix activation using
561nm laser light, followed by stimulation with 600APs at a frequency of 20Hz. Following pre-
incubation and subsequent pre-illumination, cells are stimulated with 600APs at a frequency of
(361nm laser light) is then used to activate pHoenix, followed by an ammonium pulse, which
allows you to see the total number of SVs. Experiments were carried out on a large number of
averaged locations (n=11), and signals were normalized to the ammonium signal to obtain
unbiased and optimal results. To compare to the Control, the normalized amplitudes from A)
(shown as Light/Stim) and B) (shown as Stim/Light) are added together in bar graphs (SEM).
The T-test was used to determine whether or not the differences were statistically significant.
Thus, the finding p=0.0005 shows that the differences are not statistically significant.
Considering that SVs are grouped together, we should presume that light amplitudes represented
as Stim/Light and Light/Stim are separate. As a result, the amplitudes obtained from fig.3.2B
pHoenix activation using 561nm laser light followed by stimulation with 600APs at a frequency
of 20Hz. B) 2) After pre-illumination and pre-incubation, cells are stimulated immediately with
600APs at a frequency of 20 Hz. This is followed by an illumination phase (361nm laser light) to
activate pHoenix, and finally an ammonium pulse to view the total number of SVs. Experiments
are conducted on numerous averaged regions (n=11), and signals are normalized to the
ammonium signal. C) The normalized amplitudes from A) (shown as Light/Stim) and B) (shown
as Stim/Light) are summed in bar graphs (SEM) in comparison to the Control. The T-test is used:
p=0.0005 indicates that the differences are not statistically significant. If SVs are pooled
together, we should assume that the amplitudes shown as Stim/Light and Light/Stim are distinct.
Indeed, the amplitudes obtained from B) are slightly less than the ones produced from A).
pHluorin-based assay was used to evaluate presynaptic activity. Since pHluorin is a pH-sensitive
variant of GFP with a pK of 7.1, this fluorescent tag worked well as an SV exo- and endocytosis
it is maximum emission at between 500nm and 600nm. The pHluorin moiety was then fused to
Nonetheless, the notion that when SVs merge with the plasma membrane during stimulation, the
fluorescence signal increases 20-fold, and freshly exocytosed pHluorin exposed to extracellular
neutral pH is dequenched was affirmed (fig 3.2A). After compensatory endocytosis and
subsequent reacidification of SVs, the pHluorin signal was re-quenched, and this resulted in a
An acidic pH inside SVs quenched pHluorin while the introduction of promoters in the solution
trigerred uptake of neurons causing an external pH to dequench pHluarin. This neutralized the
According to figure 3.3, pHoenix illumination (561 nm laser light) and stimulation (100APs at
10 Hz) were performed at different time intervals, namely 25 seconds (figure3.3A illumination
and 3.3B stimulation) and 50 seconds (figure3.3A illumination and 3.3B stimulation) (fig. 3.3B
illumination and 3.3A stimulation). Later on, at 60 seconds, an ammonium pulse was added. The
primary objective of the alternated lighting and stimulation was to observe the normalized
amplitude (fig. 3.3C), that is, what would happen if the pHoenix was stimulated first and then
illuminated, as opposed to what would happen if it was illuminated first and then stimulated. The
following conclusions were drawn from the experiment: i) there was no significant effect of
pHoenix illumination alone, but there was a substantial effect of consecutive illumination and
stimulation regardless of which started first. ii) As shown in fig 3.3A, pHoenix illumination prior
to stimulation contributed a lower normalized normalized amplitude (0.25) than the normalized
normalized ampllitude (0.28). iii) However, as shown in Figure 3.3B, pHoenix stimulation
following activation of the pHoenix with 561nm laser light and stimulation with 100APs at
with 100APs at a frequency of 10 Hz. Following that, an illumination step (361nm laser light) is
used to activate pHoenix, and finally, an ammonium pulse is used to visualize the total number
of SVs; experiments are conducted on numerous averaged regions (n=10), and signals are
normalized to the ammonium signal. C) Normalized amplitudes from A) (shown as Light/Stim)
and B) (shown as Stim/Light) are summed in bar graphs (SEM) in comparison to the Control.
The T-test is used: p=0.0005 indicates that there is no statistically significant difference. If SVs
all belong to the same pool, we should assume that the amplitudes represented above as
Stim/Light and Light/Stim are distinct. Indeed, the amplitudes derived with B) are approximately
signals in glutermatic neurons were monitored to follow the vesicular acidification.. Pre-
incubation with 1 μM Bafilomycin1 for 20 minutes depleted the gradient of the light-driven
proton. Under 561nm laser light and 100AP 10HZ, there were strong pHluorin signals exhibited
At 50Aps/10Hz, pHoenix Activation and Stimulation are carried out. Figure 3.4A shows the
cellular responses that occurred after the pHoenix was activated with 561nm laser light and
stimulated with 50APs at 10Hz, as shown in the experiment. Cells are stimulated directly in
figure 3.4B after pre-illumination and pre-incubation, using 50APs at a frequency of 10 Hz,
(361nm laser light) is used to activate pHoenix, and a final ammonium pulse is used to visualize
the total number of SVs; studies are conducted on several averaged locations (n=10), and signals
are normalized to the ammonium signal. Figure 3.4C depicts standard error of the mean (SEM)
(shown as Stim/Light). The T-test is employed, and the result is p=0.0005, which indicates that
there is no statistically significant difference between the groups. If all of the SVs are members
of the same pool, we should assume that the amplitudes indicated above as Stim/Light and
Light/Stim are unique from one another. In contrast to the second experimental paradigm, the
amplitudes measured in figure 3.4B are significantly smaller than the amplitudes measured in
demonstrate that, as expected, the stimulation strength indicates the greatest difference between
two amplitudes.
Figure 3.4: pHoenix Activation and Stimulation at 50Aps/10Hz. A) Cellular responses following
activation of the pHoenix with 561nm laser light and stimulation with 50APs at 10Hz. B) 2)
Following pre-illumination and pre-incubation, cells are stimulated directly utilizing 50APs at a
frequency of 10 Hz. Following that, an illumination step (361nm laser light) is used to activate
pHoenix, and finally, an ammonium pulse is used to visualize the total number of SVs;
experiments are conducted on numerous averaged regions (n=10), and signals are normalized to
the ammonium signal. C) Bar graphs (SEM) of normalized amplitudes from A) (shown as
Light/Stim vs B) (shown as Stim/Light). The T-test is used: p=0.0005 indicates that there is no
statistically significant difference. If SVs all belong to the same pool, we should assume that the
amplitudes represented above as Stim/Light and Light/Stim are distinct. Amplitudes measured in
B) are much smaller than those measured in the second experimental paradigm (A). As expected,
this stimulation strength reveals the greatest difference between two amplitudes (refer to the
561 nm laser light triggered fluorescent signal. The resulting exocytosis increase pHluorin
signals. This could have resulted from membrane fusion of phoenix-expressed SVs. The
observations showed the pHoenix construct was efficiently integrated to the synaptic vesicles.
The process of pHoenix expressions did not interfere with the release of neurons.
this experiment, the pHoenix was activated with 561nm laser light and stimulated with 50APs at
10Hz, resulting in the following cellular responses: A) As depicted in fig. 3.5, cells are
pHoenix, and a final ammonium pulse is utilized to visualize the total number of SVs; studies are
conducted on several averaged locations (n=12), and signals are normalized to the ammonium
signal. With bar graphs, the normalized from A) and 3.5B (shown as Light/Stim) are contrasted
with the normalized amplitudes from A) (shown as Stim/Light) (SEM). The T-test is employed,
and the result is p=0.0005, which indicates that there is no statistically significant difference
between the groups. All SVs belonging to the same group should have similar amplitudes, which
are represented in the table below as Stim/Light and Light/Stim dif. A significant difference
exists between the amplitudes observed in figure 3.5B and those measured in the second
experimental paradigm (figure 3.5A). As expected, the difference between two amplitudes (I'm
talking to the averaged normalized amplitudes of light/stim in figure 3.5A and stim/light in
In figure 3.5, the pHoenix was stimulated and illuminated in the same manner as in figure 3.3,
i.e., illumination followed by stimulation (fig. 3.5A) and stimulation followed by illumination
(fig. 3.5B). However, the stimulation face was reduced to 50 APs/10Hz, as opposed to 100
APs/10Hz in figure 3.3. At the 60th second, ammonification remained consistent as well.
pHoenix lighting followed by stimulation (fig. 3.5A) resulted in a somewhat lower average
flourescent amplitude than the control in the experiment in 3.5C. On the other hand, stimulation
followed by illumination of pHoenix (fig. 3.5B) resulted in a much smaller normalized amplitude
than the control and light/stimulation conditions (fig 3.5C). The results above indicate that
stimulation phase played a substantial effect in pHoenix, as the amplitudes seen in the
100APs/10 Hz phase were somewhat greater than (fig. 3.3B) or closer to (3.3A) the control.
Figure 3.5: Pre-stimulation (50Aps/20Hz) and Stimulation (50APS/20Hz) of the pHoenix. A)
Cellular responses following activation of the pHoenix with 561nm laser light and stimulation
with 50APs at 10Hz. B) 2) After pre-illumination and pre-stimulation (50APs at 20 Hz), cells are
stimulated directly with 50APs at 10 Hz. Following that, an illumination step (361nm laser light)
is used to activate pHoenix, and finally, an ammonium pulse is used to visualize the total number
of SVs; experiments are conducted on numerous averaged regions (n=12), and signals are
Light/Stim) and B) (shown as Stim/Light) are compared using bar graphs (SEM). The T-test is
used: p=0.0005 indicates that there is no statistically significant difference. If all SVs are
members of the same pool, we should assume that the amplitudes represented below as
Stim/Light and Light/Stim dif. Amplitudes measured in B) are much smaller than those
measured in the second experimental paradigm (A). As expected, this stimulation strength
reveals the greatest difference between two amplitudes (this is in references to the averaged
A wide range of observations were made when control experiments were compared to one
another (fig.3.6). The responses were obtained for control experiments using the following
stimuli: fig. 3.6A (50 APs at 10Hz stimulation), fig. 3.6B (100 APs at a frequency of 10 Hz
stimulation), and fig. 3.6C (100 APs at a frequency of 10 Hz stimulation) (600 APs at a
frequency of 20 Hz). The fluorescence signals from multiple regions are normalized and
averaged in the traces (n=10 for each condition) to produce the final results. The pre-incubation
for 20 minutes (in the presence of 1M TTX (blocks sodium channels- to prevent recurring
activity) and 5nm Bafilomycin 1a (V-ATPase inhibitor)) and pre-stimulation are not included in
the controls because they are not considered necessary. The cells were simply stimulated with 50
APs at 10 Hz, 100 APs at 10 Hz, and 600 APs at 20 Hz, as well as a combination of these
stimuli.
Figure 3.6: Comparisons from control experiments. Responses obtained for control studies
using: A) 50APs at 10Hz stimulation. B) 100 APs at a frequency of 10 Hz, and C) 600 APs at a
frequency of 20 Hz. The fluorescence signals from multiple areas are normalized and averaged
in the traces (n=10 for each condition). Pre-incubation for 20 minutes (in the presence of 1M
TTX (blocks sodium channels- to preclude recurrent activity) and 5nm Bafilomycin 1a (V-
ATPase inhibitor)) or pre-stimulation are not included in the controls. The cells were simply
stimulated with 50 APs at 10 Hz, 100 APs at 10 Hz, and 600 APs at 20 Hz, followed by an
ammonium pulse.
3.3 iGluSnFR
iGluSnFr is bright and relays stabilized imaging under illumination. In axonal-assays, IGlusnFr
is significant in detecting Ca2+, estimating and reporting excitatory synaptic release. However,
the coupling between Ca2+ presynaptic release and the transmitter collapses when vesicle pools
To visualize iGluSnFr, the construct was engineered in vitro from E. Coli Gltl and circularly
permuted GFP. The PCR product was cloned to pCDNA3-syn vector to generate pCDNA3-syn
stimulus. The major goal was to assess the influence of different numbers of APs and
spontaneous activity on the height of the pHoenix fluorescence amplitude, as shown in figure
3.7. pHoenix stimulation with 5AP was performed between the 10th and 25th seconds, 10*1AP
was produced between the 25th and 125th seconds, and spontaneous activity was introduced
The experiment revealed that stimulation with 5AP resulted in only one elongated (1.8)
fluorescence with amplitudes ranging from 1.05 to 1.2. Spontaneous activity, on the other hand,
contributed amplitudes that were significantly smaller, up to 1.05. The results show that pHoenix
activity is far more dependent on a single intense stimulation than on distributed milder
stimulating pHoenix. A: Pictorial presentation of the stimulation of the iGluSnFR at stronger AP versus weaker APs
and spontaneous activity: Graphical presentation of the AP and spontaneous activities on the pHoenix
The major goal was to assess the influence of different numbers of APs and spontaneous activity
on the height of the pHoenix fluorescence amplitude, as shown in figure 3.8. As a result,
pHoenix stimulation with 2AP was compared to single AP stimulation (fig 3.8A), and the results
were comparable to those in figure 3.7, i.e., stimulation took longer (1.3, fig 3.8A) when a
powerful AP (2AP) was utilized and shorter (1.1, fig. 3.8B) when single AP was used to
stimulate pHoenix. In figure 3.8B, the effect of a single weaker AP has been magnified. The
findings in Figure 3.8 confirm that pHoenix activity is considerably more dependent on a single
2AP stimulation versus single APs for pHoenix stimulation. B: A magnification of the amplitudes that single APs
Before the stimulation and illumination activities, a 2.5mm Ca2+ buffer solution containing AP5
and CNQX, TTX (incubation only), Baf, and 1mM ascorbic acid were administered to the
pHoenix to see evoked activity. Before and after the chemicals were applied, the number of
successful evoked activity events as well as the amplitudes (F/Fo) of the activities were recorded.
The number of successful occurrences was found to be 6.7 prior to the application of the
reagents, and 3.5 following the introduction of the chemicals (3.9A). This indicates that the
chemicals, both ascorbic and non-ascorbic, had a considerable impact on the evoked activities.
The chemicals generated a considerable decline in the amplitude of the evoked activity, with the
amplitude dropping from 40*10-3 to 38*10-3 F/Fo (fig. 3.9B). As a result, the chemicals had a
evoked activity events observed before and after the application of the 2.5mM ascorbic and non-ascorbic chemicals.
B: the amplitude (F/F0) of the evoked activity after the application of the ascorbic and non-ascorbic chemicals.
Nonetheless, the number of successful evoked activities remained the same (3.10A) in the
control experiment while the amplitude reduced (3.10B) from 70*10^-3 to 60*10^-3 F/Fo (fig.
3.10). This means that the addition of the ascorbic and non-ascorbic chemicals had no significant
effect on the amplitude of the evoked activity but a significant effect on the number of successful
evoked activities.
Figure 3-10: Evoked activities in the control experiment. A: the number of evoked activities did not change since
there was no addition of the reagents. B: the change in the amplitude of the evoked activity even no addition of
reagents.
Experiment 3.11 (fig. 3.11) was designed to show how AP depletion affects the amplitude and
occurrence of spontaneous activity. The two spontaneous actions were seen before the APs were
depleted (300APs/4Hz), while the stimulation curve trend steadily shifted to the negative (fig
3.11A). However, when the 300APs were depleted at 4Hz, the graph's trend began to
progressively rise. Despite this, due to the depletion, no spontaneous activity was observed (fig
3.11B). This meant that AP depletion had a big impact on the occurrence of spontaneous activity.
Figure 3-11: The effect of APs depletion on occurrence of spontaneous activity. A: Before the APs depletion, the
two spontaneous activities are recorded even though the trend of the graph falls rapidly. B: As the APs get depleted,
The measurements of the number of successful events and the amplitude of the evoked activity
before and after the administration of 1mM ascorbic and non-ascorbic reagents are carried out in
figure 3.12 a and 3.13, which are identical to those carried out in figure 3.9. The number of
successful induced activity events as well as the amplitudes (F/Fo) of the activities were recorded
before and after the chemicals were applied, and the results were similar. The number of
successful occurrences was found to be 6.7 before the reagents were applied, and 3.5 after the
chemicals were introduced (3.12A). This suggests that both ascorbic and non-ascorbic
substances had a significant impact on the elicited activities. The chemicals caused a significant
decrease in the amplitude of the evoked activity, which fell from 40*10-3 to 38*10-3 F/Fo (fig.
3.12B). As a result, the substances significantly influenced the amplitude of the induced activity.
Nonetheless, in the control experiment, the number of successful evoked activities remained
constant (3.13A), although the amplitude decreased (3.13B) from 70*10-3 to 60*10-3 F/Fo (fig.
3.13). This suggests that the ascorbic and non-ascorbic chemicals had no influence on the evoked
activity's amplitude but did have a substantial effect on the number of successful evoked
activities.
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