Professional Documents
Culture Documents
UNIT4:BODYFLUIDSANDDNA
IntheinvestigationofcrimessuchasMurder,robbery,rape,Theexaminationof
biologicalmaterialsplayanimportantroleinconnectingthecriminalwithacrime.Such
biologicalspecimensmaybeintheformofbodyFluidsstainsorothermaterialslike
blood,semen,saliva,urineFecalmatte,andmilk.Theseareoftenthekeyinacriminal
investigationandaresubsequentlyrelieduponincourt.Manybodyfluidstainsare
invisibleandpresentinverysmallquantitiesormixtures,soidentificationisnotalways
straightforward.
A. BLOOD
Bloodisa bodyfluidinhumansandotheranimalsthatdeliversnecessarysubstances
suchasnutrientsandoxygentothecellsandtransportsmetabolicwasteproductsaway
fromthosesamecells.
Inhumans,bloodisano paqueredfluid,freelyflowingbutdenserandmoreviscousthan
water.Thecharacteristiccolorisimpartedbyh emoglobin,auniqueiron-containing
protein.Hemoglobinbrightensincolorwhensaturatedwithoxygen(oxyhemoglobin)
anddarkenswhenoxygenisremoved(deoxyhemoglobin).
Bloodisconductedthroughbloodvessels(arteriesandveins).Bloodispreventedfrom
clottinginthebloodvesselsbytheirsmoothness,andthefinelytunedbalanceofclotting
factors.
TypesofBloodCells
We
have seen blood consist of cells known as formed elements of blood. These cells have
their own functions and roles to play in the body. The blood cells which circulate all
aroundthebodyareasfollows:
Redbloodcells(Erythrocytes)
RBCs are biconcave cells and without nucleus in humans, also known as erythrocytes.
RBCs contain the iron-rich protein called hemoglobin; gives blood its red color. RBCs
are the
most
copious
blood
cells
produced
in
the
bone
marrow. Their primary function is
totransportoxygenfromandtovarioustissuesandorgans.
Whitebloodcells(Leucocytes)
Leucocytes are colorless blood cells. They are colorless because it is devoid of
hemoglobin. They are further classified as granulocytes and agranulocytes. WBCs mainly
contributetoimmunityanddefensemechanism.
FunctionsofBlood[additionalinfo]
Bloodisresponsibleforthefollowingbodyfunctions:
FluidConnectiveTissue:B loodisafluidconnectivetissuecomposedof55%plasma,
and45%formedelements,includingWBCs,RBCs,andplatelets.Sincetheselivingcells
aresuspendedinplasma,bloodisknownasafluidconnectivetissueandnotjustfluid.
Providesoxygentothecells:B loodabsorbsoxygenfromthelungsandtransportsitto
differentcellsofthebody.Thewastecarbondioxidemovesfromthebloodtothelungs
andisexhaled.
TransportsHormoneandNutrients:T hedigestednutrientssuchasglucose,vitamins,
minerals,andproteinsareabsorbedintothebloodthroughthecapillariesinthevilli
liningthesmallintestine.
The hormones secreted by the endocrine glands are also transported by the blood to
differentorgansandtissues.
Homeostasis:B loodhelpstomaintaintheinternalbodytemperaturebyabsorbingor
releasingheat.
BloodClottingatSiteofInjury:T heplateletshelpintheclottingofbloodatthesiteof
injury.Plateletsalongwiththefibrinformclotatthewoundsite
TransportofwastetotheKidneyandLiver:B loodentersthekidneywhereitis
filteredtoremovenitrogenouswasteoutofthebloodplasma.Thetoxinsfromtheblood
arealsoremovedbytheliver.
CompositionofBlood.
There are
many cellular
structures
in
the
composition of blood. When a sample of blood
is spun in a centrifuge machine, they separate into the following constituents: Plasma,
buffycoat,anderythrocytes.
Plasma
The liquid state
of
blood can
be
contributed to
plasma as
it
makes up ~55% of blood. It
is pale yellow in color, and when separated, it consists of salts, nutrients, water, and
enzymes. Blood plasma also contains important proteins and other components necessary
for overall health. Hence, blood plasma transfusions are given to patients with liver
failureandlife-threateninginjuries.
RedBloodCells(RBC)
Red blood cells consist of Haemoglobin, a protein. They are produced by the bone
marrowtoprimarilycarryoxygentothebodyandcarbondioxideawayfromit.
WhiteBloodCells(WBC)
White blood cells are responsible for fighting foreign pathogens (such as bacteria,
viruses, fungi) that enter our bodies. They circulate throughout our body and originate
fromthebonemarrow.
Platelets[thrombocytes]
Tiny disc-shaped cells help regulate blood flow when any
part
of
the
body
is
damaged,
therebyaidinginfastrecoverythroughclottingofblood.
The
above-stated elements form the composition of blood in humans. The only vertebrate
without hemoglobin is the crocodile icefish. It derives its oxygen requirement directly
fromthecold,oxygen-richwaterwhereitlives.
BloodGroupSystem
Karl Landsteiner, an Austrian scientist, discovered the ABO blood group system in the
year 1900. In his
experiments, he
mixed different blood
types.
He noted that
the
plasma
from certain blood types
produced agglutinates or formed clusters caused by the absence
of molecules on red blood cells and resulting in antibodies to defeat that molecule. He
then made a note of the agglutination and divided the blood types into four different
groups.ForthediscoveryoftheABObloodgroup,hewasawardedtheNobelPrize.
The blood grouping system is pivotal in blood transfusion. Our immune system
recognizes another
blood type as
foreign
and attacks
it
if
introduced in the body, causing
a transfusion reaction. Any inappropriate match with the Rh and ABO blood types
cause the
most
serious
and life-threatening transfusion reactions. Therefore, before blood
transfusion,itissuggestedtohaveabloodgroupchecked
During the blood transfusion, the two most important group systems examined are the
ABOsystemandtheR hesussystem.
The ABO blood group system consists
of 4 types of blood groups – A, B, AB, and O and
is
mainly
based on
the
antigens and antibodies on red blood cells and in the plasma. Both
antigens and antibodies are protein molecules in which antigens are present on the
surface
of
Red Blood Cells
and
antibodies are
present in the plasma which is involved in
defendingmechanisms.
On the other hand, the Rh blood group system consists of 50 defined blood group
antigens. In
the
Rh
system, the
most important
antigens
are
D,
C,
c,
E,
and
e.
The
ABO
andRhbloodsystemsarediscussedindetailbelow.
1.ABObloodgroupsystem
The basis of ABO grouping is of two antigens- Antigen A and Antigen B. The ABO
grouping system is
classified into four types based on the presence or absence of antigens
ontheredbloodcellssurfaceandplasmaantibodies.
● GroupA– containsantigenAandantibodyB.
● GroupB– containsantigenBandantibodyA.
● GroupAB– containsbothAandBantigensandnoantibodies(neitherAnorB).
● GroupO– containsneitherAnorBantigenandbothantibodiesAandB.
2.RhBloodGroupSystem
In addition to
the ABO blood grouping system, the
other prominent one is
the
Rh blood
group system. About two-thirds of the population contains the third antigen on the
surface of
their red blood cells
known as
Rh factor
or Rh antigen; this
decides whether
the blood
group is
positive or negative. If the Rh factor is present, an individual is rhesus
positive (Rh+ve); if an
Rh factor
is
absent individual is rhesus negative (Rh-ve) as they
produceRh.
GENERALEXAMINATIONOFBLOODSTAINS
( 1)STAINSFOUNDATTHESCENEOFTHECRIME:Oneoftheimportant
aspectsofthevisittothesceneofthecrimeissearchingforandinterpreting
bloodstains.Relativelyminorbloodsmearingmayalsoprovidesignificant
evidence,suchasasmearonthedoorhandle.Heelprintsorshoeprintson
bloodstainedareasofthebody,helpintheidentificationoftheassailant.The
distributionandamountofbloodatthesceneofthecrimemaygivevaluable
informationaboutthemannerofdeath,whetheritwassuicidalortoseecleardrag
marks.Smearscausedbyfingersorpalmsarehelpfulinidentification.A
photographofbloodstainsatthesceneofacrimeisuseful.
(2)PARTOFTHEBODYFROMWHICHSTAINISDERIVED: MENSTRUAL
BLOODisusuallyfoundonfemalegarments,diapers,orpiecesofcloth.Itisdark
andfluid,hasadisagreeablesmellandthereactionisacid..•Ifthebloodisfrom
theNOSE,mucusandhairfromthenosemaybefound.VOMITEDBLOODisof
chocolatecolourandacidinthereactionduetotheactionofgastricjuice.Blood
duetoHAEMOPTYSISisbrightredandfrothy,withanalkalinereaction.blood
duetoRAPE,semen,andpubichairmaybefound.BloodstainsduetoBOILS
ANDSORESshowasmearedappearancewithoutdefinitedropsofbloodand
maycontainpuscellsandbacteria.
( 3)AGEOFBLOODSTAINS:Freshstainsonlight-coloredclothesareofbright
redcolor,whichgraduallychangestoreddish-brownin24hours,andbrown
withinafewdays,whichmaybecomeblackafteralongtime.Freshstainsare
moistandsticky,andondrying,theystiffentheclothbecauseoftheproteins.
Onmanymetallicarticles,bloodstainsappearasdarkshiningspotsorsmears,and
whendry,showfissuresandcracks.
Inordinaryconditions,adropofblooddriesinanhourortwo.Ifbloodis
collectedinpools,itmaytake12to36hourstodry,dependinguponthesizeand
depthofthepoolformed.
Therecentlyshedarterialbloodisbright-redandvenousblooddark-red.The
solubilityofbloodstainsinwaterandotherliquidsdependsmainlyontheageof
thestainsandthetypeofmaterialonwhichitisfound.
Thefreshertheblood,themoreeasilyitisdissolved.Thesolubilitygradually
diminisheswithage.Theagecanalsobedeterminedbythespreadofthesoluble
ingredientslikechloridesintothesurroundingmaterial.
Fluorescencedecreasesasthestainbecomeolderduetotheincreasingamountof
haematin.Itcanonlybestatedthatthestainisveryfresh,recent,someweeks,
months,orveryold.
( 4)SEXANDAGEOFPERSON:Sexcanbedeterminedfromthepresenceof
sexchromatinintheleucocytesifthecellscanbeidentified.Atbirth,theblood
formsathinnerandsoftercoagulum.Thepresenceoffetalhemoglobinindicates
thatthebloodisderivedfromachild.
(5)LIVINGORDEADBODY:Bloodthathaseffusedduringlifecanberemoved
inscalesondrying,duetothe·presenceoffibrin.Bloodthathasflowedafter
deathtendstobreakupintoapowderondrying.
(6)SOURCEOFBLOOD:Ifthevictimandassailantareofdifferentblood
groups,itishelpfulinestablishingtheidentity.Ifthestainsareontheinnersideof
thegarment,theyusuallybelongtothevictim,butiffoundoutsidetheymay
belongtothevictimoraccused.
PresumptiveTests
● Alsoknownaspreliminarytests,screeningtests,orfieldtests
● Establishthep ossibilitythataspecificbodilyfluidispresent
● Donotconclusivelyprovethepresenceofaspecificsubstance
● Pros:Narrowspossibilities,canbeusedonlargerareas,canlocatepossible
evidencenotvisibletothenakedeye,relativelyinexpensive,andquickto
perform
● Cons:Riskoffalsepositivesandmaybeoverlysensitive
● Uses:Provideinitialinformationtodeterminewhattesttoperformnext,usedin
combinationwithconfirmatorytests
1. Benzdinidetest/TMBtest[referrecord]
2. )PhenolphthaleinTest(Kastle-MeyerTest):Toasolutionextractedfrom
thestainwithdistilledwater,addtentotwentydropsofphenolphthalein
reagent(phenolphthalein2g.+sodiumhydroxide20g.+zinc+distilled
water100ml),andthenadroportwoof10volumeshydrogenperoxide.If
bloodispresent,apinkorpurplecolordevelopsimmediately.Thetestis
morespecificforbloodthanthebenzidinetest,butcomparativelyless
sensitive.Tracesofcoppergiveapositivereaction.Thetestsemploying
guaiacum(deepblue)andleucomalachitegreenarerarelyusedin
medico-legalwork.
ConfirmatoryTests
● Conclusivelyidentifytheidentityofabiologicalmaterial
● Maybeoneoracombinationofprocedures
● Pros:Conclusivelyidentifiesasubstance,smallerriskoffalsepositives
● Cons:Maybemoreexpensive,requireadditionalequipment,andtakelonger
1. TeichmanTest[referrecord]
2. Takayamatest[referrecord]
MedicolegalApplicationofBloodGroupsandbloodexamination:
(1)DisputedPaternity:ThequestionofdisputedpaternityarisesintheCourtinthe
followingconditions.(1)Whenachildisborninlawfulmarriage,butthehusbanddenies
thatheisthefatherofthechild.(2)Whenachildisbornoutoflawfulmarriage,andthe
motheraccusesacertainmanofbeingthefatherofthechild,whilethemandeniesthe
accusations.(3)Whenawomanpretendspregnancyanddeliveryandobtainsachild
claimingitasherown,inordertoobtainashareinherhusband'sproperty.(4)Insuitsfor
nullityofmarriage.
(2)DisputedMaternity:Whenthesamechildisclaimedbytwowomen,orwhentwo
childrenareinterchangedeitherbyaccidentorbydesigninthematernityhomeor
hospital,orsupposititiouschild,andwhenawomankidnappingachildandclaimingto
bethemotherofthatchild,bloodgroupingtestsarehelpful.
(3)Crimes:Bloodstainsmaybefoundontheclothingandpersonofthesuspectand
crimescene.
(4)StainsduetoBodyFluids:Thebloodgroupagglutinogenscanbedemonstratedin
stainsonclothesduetosemen,sweat,saliva,nasalsecretion,urine,orfecesinpersons
whoare"secretors".Thismaybecorroborativeevidenceoftheaccused.
(5)Identity:Thespecificityofvariousbloodgroupcombinationsislikethatofthe
fingerprints.Whenanindividualhassomerarebloodgroup,hecanbeidentifiedwith
certainty.Butwhentheyareofcommontype,theyarenotofuse.
(6)CauseofDeath:Incertaincases,causeofdeathcanbeestablished,e.g.,
incompatiblebloodtransfusion.Poisonscanbedetectedintheblood.
B.S EMEN
Semenisagreyish-whitebodilyfluidthatissecretedbythegonadsofmaleanimals.It
carriesspermorthespermatozoaandfructoseandotherenzymesthathelpthespermto
survivetofacilitatesuccessfulfertilization.
thecellularelementsconsistofspermatozoaandepithelialcellsformedbythetestes
semenisathickwhiteapleasantsecretionhavingcharacteristicorderknownasseminal
odor.
Thesementravelsthroughtheejaculatoryductsandmixeswithfluidsfromtheseminal
vesicles,theprostate,andthebulbourethralglands.
Theseminalvesiclesproduceaviscous,fructose-richfluidformingaround65-70%ofthe
semenbase.
Thewhitecolorofthesemenisduetosecretionfromtheprostateglandscontaining
enzymes,citricacid,lipids,andacidphosphatase.Thisformsaround25-30%ofthe
semenbase.
Ateachejaculation,around200-500millionspermsarereleasedbythetestes.Thisforms
about2-5%ofthesemencomposition.
Apartfromthese,thebulbourethralglandsproduceaclearsecretion.Thishelpsinthe
mobilityofthespermcellsinthevaginaandcervix.
ExaminationofSeminalStain
Theexaminationofseminalstainmaybecarriedby4methodswhicharephysical,
chemical,microscopic,andelectrophoretic.thematerialsofexaminationarecollectedas
follows:
1.theportionofthefabricwearingthestainiscutdriedintheshadetoprevent
putrefactionandcarefullypreserved.
2.Ifpubichairismattedtogether,aportioniscutandkepttogether.
3.Todemonstratethepresenceofsemeninthevaginaswapsaretakenonsterilegauzeor
clothandSmearpreparedonsterileslides
4.Driedadrawingseminalfluidonthethighandperineumiscollectedonapieceof
constantclothandtried.
5.drystainonsmoothsurfacesisgentlyscriptwiththecleanplantscalpelintoaglass
container
GENERALEXAMINATION
GarmentsSubmittedforlaboratoryexaminationareoftendirtyandmaycontainavariety
ofstains;reddishcoloriscommonlycomposedofblood;yellowishcolorforvaginal
dischargeorurine,greyishappearancemaybeduetothesemen.Apreliminary
examinationusingUVlightcanbemadewherethestainsofurineandseminalfluidwill
showabrightfluorescence.thefluorescentseminalstainsisabluish-whitecolorandsuch
stainsareselectedforfurtherexamination
PresumptiveTests
1.AcidPhosphataseTest:A lsoknownastheWalkerTestorBrentaminespottest.The
maleprostateglandproducesandsecretsintosemenahighamountoftheenzymeacid
phosphatase(AP).InthepresenceofAlpha-NaphthylacidphosphateandBrentamine
FastBlue,APwillproduceadarkpurplecolorinlessthanaminute.
2.AlternativeLightSources:Underspecializedlights,semenwillfluoresceduetothe
presenceofmoleculessuchasFlavinandCholine-conjugatedproteins.Thiscolorwill
varyfrombluetoyellowdependingonthelightequipmentused.
3.Prostate-SpecificAntigen:Testdetectsprostate-specificantigen(PSA).PSAis
producedinhighamountsbythemaleprostategland
ConfirmatoryTests
1.ChristmasTreeStain:P ositivevisualidentificationofspermcellsusingastain.Two
mainreagentsareusedconsecutivelytoproducethisdistinctivestain:
Picroindigocarminestainstheneckandtailportionsofthespermingreenandblue,while
theNuclearFastRed(AKAKernechtrot)givesthespermheadsareadcolorandthetip
oftheheadsapinkcolor.
2.R
SIDTestforSemen:I dentifiesthepresenceoftheseminalvesicle-specificantigen
orsemonogelin.Thisantigenisuniquetohumansemen;therefore,thereisno
cross-reactivitywithotherbodilyfluidsinmalesandfemalesorwithsemenfromother
mammals.Thistestcanalsoidentifysemenevenifthestainwasstoredinlessfavorable
conditions.
DETERMINATIONOFBLOODGROUPUSINGSEMEN
When semen is positively identified in vaginal fluid or other samples, a test can be
carried
out
for
the
presence of blood group substances in the same sample. The ‘secretor’
individuals (80% individuals are secretors) will secrete the blood group substances in
bodyfluids,includingsemen.
MedicolegalApplication
SemenisthesecondmostcommonformofthematerialtestedforDNA.Itisalmost
certainlytheprimaryevidenceinmostsexualcrimessuchasrape.Itis,infact,thesperm
headsthatcontaintheDNAratherthanseminalfluid.Therefore,beforeDNAanalysisis
performed,itisadvisabletoascertainfirstwhetherthematerialisactuallysemenand
doescontainsperm.Testingasphericsemenwouldclearlybeoflittlevaluesincethere
wouldbenospermpresent.Semen-stainedclothingshouldsimilarlybeexaminedto
confirmthepresenceofsperm.
Semenmaybefoundinliquidformorasdriedsmearsorstains.Or,itmaybefoundin
thevagina,anus,orrectum.Freshsemenisagel-likefluid,whichliquefiesonexposure
totheatmosphere.Normalejaculationisabout3.4ml,containingaboutthirtymillion
sperms.Thedryweightisaboutsevenpercentoftheliquidweight.Thespermhasa
definitemorphologicalstructure.Itsidentificationinastainestablishesitsseminalnature.
Theshapeandsizeofahumanspermatozoonarecharacteristic.Butthemorphology
alonedoesnotpermitindividualization.
Thesemen,ofsomepersons,doesnotcontainaspermatozoon.Itiscalledaspermic
semen.Thismaybeduetosomediseaseoritmaybeduetovasectomyoperation.Insuch
cases,identificationofsemenfromspermisnotpossible.Howeverimmunologicaltests
usinganti-semensereagainstseminalplasmaareincreasinglybeingacceptedasalabeled
testforaspermicsemen.
Chemically,semenisacomplexmixtureoforganicandinorganiccompounds.Important
constituentsofsemen,fromanidentificationpointofview,areproteinsincluding
enzymes,bloodgroupfactors,choline,fructose,citricacid,uricacid,andzinc.The
compositionvariesfromindividualtoindividual.
Visuallocationofsemenisadifficulttaskbecausethestainsarealmostcolorlessandcan
bedestroyedbywashing.Semenstrainsarefoundonthevictimandtheculpritontheir
garments,atthesceneofoccurrence,andinthevehicleinoneisusedforthecommission
ofthecrime.
Additionalinfo:Saliva:-SALIVA
Salivaisacomplexbiologicalfluidsecretedfromacinarglands.Salivasamplescanbe
coupledwithforensicindeterminingtheDNAprofilingofanindividualandforensic
evidence.SamplesofsalivaandmouthswabsintheDNAtestingismucheasierthan
blood,sincethesampletakingiseasy,painless,andcouldbeaformoftestforchildren
also.Noreligiouscomplicationsarealsotherewhicharepresentintheblood.Itisfound
tobeanemergingforensictoolincasesofdrugabuse,bitemarksanalysis,sex
determination,etc.
C.D
NAPROFILING/FINGERPRINTING
DNAfingerprinting(DNAtyping,DNAidentification,orgenetictyping)isatechnique
involvingchemicallydividingtheDNAintofragmentsthatformauniquepatternand
thenmatchingthat"identityprofile"withthepatternobtainedfromsimilarlytestinga
suspect'sbloodspecimen.Ifthetwopatternsmatch,thepossibilityoferror,i.e.the
chancethattheydonotbelongtothesameindividualmaybelessthanonein30billion.
Dr.AlecJeffreysin1985,developedDNAfingerprinting.
Thehumanbodyconsistsofaboutsixthousandbillioncellswhichconstitutetissueand
organsystems.Everylivingcellhasgeneticmaterialcontainedinunitscalled
chromosomes,whicharelocatedinthenucleus.DNAispresentonlyinnucleatedcells.
Eachhumansomaticcellhas23pairsofchromosomes.Geneisarrangedalongthelength
ofeachchromosome.whichareresponsibleforvariousfunctions.Eachgenecarries
instructionsfortheproductionofaparticularproteinthatperformsaparticularfunction.
Genesarealsoresponsibleforthetransmissionofheredity.
FollowingarethestepsinvolvedinDNAfingerprinting:
IsolatingtheDNA.
↓
DigestingtheDNAwiththehelpofrestrictionendonucleaseenzymes.
↓
Separatingthedigestedfragmentsasperthefragmentsizebytheprocessof
electrophoresis.
↓
Blottingtheseparatedfragmentsontosyntheticmembraneslikenylon.
↓
HybridizingthefragmentsusinglabelledVNTRprobes.
↓
Analyzingthehybridfragmentsusingautoradiography
TherearetwomethodsofDNAanalysisincommonuse.(1)RFLP(restrictionfragment
lengthpolymorphism).(2)PCR(polymerasechainreaction).
1.Restrictionfragmentlengthpolymorphism(RFLP)
1. ThefirststepinthisprocessistoisolatetheDNAfromthesamplematerialto
betested.ThesamplesizefortheRFLPtestmustbelargeenoughtogetthe
properresult.
2. Oncetherequiredsizeofthesampleisavailable,theDNAisisolatedfromthe
sampleandiss ubjectedtorestrictiondigestionusingrestrictionenzymes.
3. ThedigestedDNAsampleisthens eparatedbyagarosegelelectrophoresis,
inwhichtheDNAisseparatedbasedonthesize.
4. Thenextstepisthet ransferofseparatedDNAfromthegelslabontothe
nitrocellulosem embranetohybridizewithalabeledprobethatisspecificfor
oneVNTRregion(radioactivitylabeledcomplementarysequenceforVNTR
regionnucleotidesequence).
5. ThistechniqueoftransferringandhybridizingDNAontonitrocellulose
membraneisknownassouthernblotting,amostwidelyusedDNAdetection
techniquebymolecularbiologists.
6. Afterthehybridizationwiththeradioactiveprobes,theX -rayfilmis
developedfromthesouthernblotting,andonlytheareaswheretheradioactive
probebindswillshowuponthefilm.
7. Nowthesebandswhenc omparedwiththeotherknownsamples,willgive
thefinalresultoftheDNAfingerprinting.
Advantages
TheRFLPisconsideredtobemoreaccuratethanthePCR,mainlybecauseofthesizeof
thesampleusedmore,theuseofafreshDNAsample,andnoamplification
contamination.
Limitation
TheRFLP,however,requiresalongertimeperiodtocompletetheanalysisandiscostly.
2)POLYMERASECHAINREACTION(PCR):
ThistechniqueisusedwhenaverysmallamountofDNAorapartiallydegraded
biologicalmaterialisavailable.AsmallamountofDNAisamplifiedmorethana
million-foldusingthermalTAQpolymerase.Itisparticularlyusefulfordiagnostic
purposes.
ThePCRinvolvesthreemajorcyclicreactions:
Denaturation
Denaturationoccurswhenthereactionmixtureisheatedto94℃forabout0.5to2
minutes.ThisbreaksthehydrogenbondsbetweenthetwostrandsofDNAandconverts
themintosingle-strandedDNA.
ThesinglestrandsnowactasatemplatefortheproductionofnewstrandsofDNA.The
temperatureshouldbeprovidedforalongertimetoensuretheseparationofthetwo
strands.
Annealing
Thereactiontemperatureisloweredto54-60℃foraround20-40seconds.Here,the
primersbindtotheircomplementarysequencesonthetemplateDNA.
Primersaresingle-strandsequencesofDNAorRNAaround20to30basesinlength.
TheyserveasthestartingpointforthesynthesisofDNA.
Thetwoseparatedstrandsrunintheoppositedirectionandconsequentlytherearetwo
primers-aforwardprimerandareverseprimer.
Elongation
Atthisstep,thetemperatureisraisedto72-80℃.Thebasesareaddedtothe3’endofthe
primerbythepolymeraseenzyme.
ThiselongatestheDNAinthe5’to3’direction.TheDNApolymeraseaddsabout
1000bp/minuteunderoptimumconditions.
Thepolymerasecantolerateveryhightemperatures.Itattachestotheprimerandadds
DNAbasestothesinglestrand.Asaresult,adouble-strandedDNAmoleculeis
obtained.
Thesethreestepsarerepeated20-40timesinordertoobtainanumberofsequencesof
DNAofinterestinaveryshorttimeperiod.
Advantages:A smallamountofspecimenissufficientforthetest.Takesashortertime
tocomplete.Lesscostly.
Limitation:L essaccuratethanRFLP,Possibilityofamplificationcontamination.