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Appl Microbiol Biotechnol (2004) 66: 108–114

DOI 10.1007/s00253-004-1624-4

APPLIED MICRO BIAL AND CELL PHYSIOLOGY

Shingo Izawa . Machiko Sato . Kumio Yokoigawa .


Yoshiharu Inoue

Intracellular glycerol influences resistance to freeze stress


in Saccharomyces cerevisiae: analysis of a quadruple mutant
in glycerol dehydrogenase genes and glycerol-enriched cells
Received: 23 February 2004 / Revised: 2 April 2004 / Accepted: 7 April 2004 / Published online: 4 May 2004
# Springer-Verlag 2004

Abstract Glycerol is well known as a cryoprotectant before freezing have been reported to affect freeze-thaw
similar to trehalose. However, there is little information stress tolerance (Lewis et al. 1993; Hino et al. 1990; Park
about the effects of intracellular glycerol on the freeze- et al. 1997). It has also been reported that several cellular
thaw stress tolerance of yeast. Through analysis of a factors affect freeze-thaw stress tolerance, including
quadruple-knockout mutant of glycerol dehydrogenase intracellular trehalose levels (Hino et al. 1990; Shima et
genes (ara1Δ gcy1Δ gre3Δ ypr1Δ) in Saccharomyces al. 1999; Hirasawa et al. 2001), heat shock protein levels
cerevisiae, we revealed that the decrease in glycerol (Kaul et al. 1992), the lipid composition of the cell
dehydrogenase activity led to increased levels of intracel- membrane (Murakami et al. 1996), respiratory capacity
lular glycerol. We also found that this mutant showed (Park et al. 1997), expression of aquaporin (Tanghe et al.
higher tolerance to freeze stress than wild type strain 2002), and certain amino acids (Takagi et al. 1997; Shima
W303-1A. Furthermore, we demonstrated that intracellu- et al. 2003).
lar-glycerol-enriched cells cultured in glycerol medium Glycerol is well known as a cryoprotectant similar to
acquire tolerance to freeze stress and retain high leavening trehalose (Coutinho et al. 1988), and is widely used in
ability in dough even after frozen storage for 7 days. These laboratories as a stabilizer of enzymes. Exogenous glyc-
results suggest the possibility of using intracellular- erol is a less toxic cryoprotectant for yeast cells (Lewis et
glycerol-enriched cells to develop better frozen dough. al. 1993), thus glycerol is also used as a frozen storage
solution for such cells. In contrast with trehalose, curiously
enough, little information is available on the effects of
Introduction intracellular glycerol on the freeze stress tolerance of
yeast. As shown in Fig. 1, in S. cerevisiae, glycerol is
Frozen dough technology has been used in the baking biosynthesized by the reduction of dihydroxyacetone
industry to improve labor conditions for bakers and to phosphate (DHAP) to glycerol 3-phosphate (G3P) by
supply oven-fresh bakery products to consumers. One of NAD+-dependent glycerol-3-phosphate dehydrogenase
the serious drawbacks of this technology is a significant (GPDH) followed by dephosphorylation of G3P to
reduction in leavening activity during freeze storage. glycerol by glycerol-3-phosphate phosphatase (G3Pase)
Freeze stress affects the viability and activity of yeast (Albertyn et al. 1994; Ansell et al. 1997; Påhlman et al.
cells. To develop better baker’s yeasts for frozen dough, 2001). The genes GPD1 and GPD2 encode isozymes of
mechanisms of freeze-thaw stress tolerance in Saccharo- GPDH (Larsson et al. 1993; Eriksson et al. 1995), and
myces cerevisiae have been investigated with great GPP1 and GPP2 encode G3Pase (Påhlman et al. 2001). It
interest. The growth phase and the prefermentation period has been reported that deletion of both GPD1 and GPD2
results in a total shutdown of the glycerol synthesis
S. Izawa . Y. Inoue (*) pathway and no glycerol is synthesized (Ansell et al. 1997;
Laboratory of Molecular Microbiology, Graduate School of Nissen et al. 2000). On the other hand, in addition to
Agriculture, Kyoto University, passive diffusion of glycerol, yeast cells can take up
Uji, Kyoto, 611-0011, Japan
e-mail: inoue@food2.food.kyoto-u.ac.jp extracellular glycerol via the transporters Gup1 and Gup2
Tel.: +81-774-383773 (Sutherland et al. 1997; Holst et al. 2000), and export
Fax: +81-774-333004 intracellular glycerol via the Fps1 channel (Luyten et al.
1995; Sutherland et al. 1997; Tamas et al. 1999; Remize et
M. Sato . K. Yokoigawa
Department of Food Science and Nutrition, Nara Women’s al. 2001).
University, Glycerol is converted to dihydroxyacetone by NADP+-
Nara, 630-8506, Japan dependent glycerol dehydrogenase (GDH) in yeast
109

Materials and methods

Yeast strains and media

The S. cerevisiae strains used in this study are listed in


Table 1. Since it has been reported that freeze tolerance is
higher in stationary phase cells than in log-phase cells
(Park et al. 1997), all cells used in this study were cultured
until stationary phase. Cells were cultured in SD minimal
medium (2% glucose, 0.67% yeast nitrogen base w/o
amino acids, pH 5.5) or SG medium (0.5% glucose, 3%
glycerol, 0.67% yeast nitrogen base w/o amino acids,
pH 5.5) with appropriate amino acids and bases at 28°C
with reciprocal shaking (120 rpm) in Erlenmeyer flasks.
Fig. 1 Pathways involved in glycerol metabolism in Saccharomy-
ces cerevisiae. Glycerol is formed from dihydroxyacetone phosphate
(DHAP) in a two-step reaction catalyzed by glycerol-3-phosphate GDH-gene disruption
dehydrogenase (GPDH) (Gpd1, Gpd2) and glycerol-3-phosphate
phosphatase (G3Pase) (Gpp1, Gpp2). Additionally, yeast cells can Genes encoding GDH were disrupted by the one-step PCR
take in glycerol via transporters Gup1 and Gup2. Glycerol is method (Lorenz et al. 1995). The DNA fragment (1.2 kb)
converted to dihydroxyacetone (DHA) by NADP+-dependent glyc-
erol dehydrogenase (GDH) (Ara1, Gcy1, Gre3, Ypr1). GAP
encoding the ara1Δ∷TRP1 region was amplified using
Glyceraldehyde 3-phosphate, G3P glycerol 3-phosphate the plasmid pRS314 as a template and 5′-
ACTGGGTTTGGGGACAGCAAATCCTCACGAAAA-
GTTTCGGTGATGACGGTGAAAACCT-3′ and 5′-
(Fig. 1). S. cerevisiae contains at least four genes encoding ATGGCTGCAAATGGCTCATCGATGAATCTCACTG-
GDH: ARA1, GCY1, GRE3, and YPR1 (Oechsner et al. GTATTTCACACCGCAGGCAAGTGCA-3′ as primers.
1988; Kuhn et al. 1995; Nakamura et al. 1997; Kim et al. The DNA fragment (3.0 kb) encoding the gcy1-
1998). It is expected that dysfunction of GDH causes the Δ∷LEU2 region was amplified using the genomic DNA
accumulation of intracellular glycerol. In order to of a gcy1Δ∷LEU2 mutant (Oechsner et al. 1988) as a
determine the effect of GDH on intracellular glycerol template and primers 5′-TTTATCTTCCAAGGACAT-
levels, we constructed and analyzed knockout mutants of GACC-3′ and 5′-CAATCATACGAGAAACACGCAA-3′.
GDH genes. Through analysis of such a GDH-mutant The DNA fragment (1.8 kb) encoding the gre3Δ∷cgHIS3
(ara1Δgcy1Δgre3Δypr1Δ quadruple knockout mutant), region was amplified using the plasmid pSHB1805
we revealed that decreased activity of GDH caused (Kitada et al. 1995) as a template and primers 5′-
increased levels of intracellular glycerol and increased GTTGCGACTACGGCAACGAAAAGGAAGTTGGTG-
freeze-thaw tolerance. Furthermore, we found that dough AAGGTACAGCTATGACCATGATTACG-3′ and 5′-
prepared with intracellular-glycerol-enriched cells cultured GATTTTGGAATGACGGCAATGCCTCTCTCTGAGT-
in glycerol medium leavened well after frozen storage, TGCCCATATGTGCTGCAAGGCGATTAA-3′.
indicating the possibility of using intracellular-glycerol- The DNA fragment (1.2 kb) encoding the ypr1-
enriched cells to develop better frozen dough. Δ∷URA3 region was amplified using the plasmid
YEp24 as a template and primers 5′-
AGAAGAAGTTGGCAGGGCTATTAAAGAATTCCG-
GAGTCCCTAGTCCGTGGAATTCTCATG-3′ and 5′-
GATCCCCACTTCATATCAACGACTCTCTTTGTAC-
CATGCTCATTACGACCGAGATTCCC-3′.

Table 1 Yeast strains used in this study


W303-1A MATa ade2-1 ura3-1 his3–1 trp1-1 leu2-3, 112 can1-100
W303-1B MATα ade2-1 ura3-1 his3-1 trp1-1 leu2-3, 112 can1-100
ara1Δ W303-1A, except for ara1Δ∷TRP1
gcy1Δ W303-1A, except for gcy1Δ∷LEU2
gre3Δ W303-1A, except for gre3Δ∷cgHIS
ypr1Δ W303-1A, except for ypr1Δ∷URA3
ara1Δgcy1Δypr1Δ W303-1A, except for ara1Δ∷TRP1 gcy1Δ∷LEU2 ypr1Δ∷URA3
ara1Δgcy1Δgre3Δypr1Δ W303-1A, except for ara1Δ∷TRP1 gcy1Δ∷LEU2 gre3Δ∷cgHIS ypr1Δ∷URA3
gpd1Δgpd2Δ W303-1A, except for gpd1Δ∷URA3 gpd2Δ∷LEU2
110

These DNA fragments were introduced into the W303- Results


1A and W303-1B strains to construct each knockout
mutant. Disruption of each gene was confirmed by PCR. Intracellular glycerol levels elevated by GDH gene
Double, triple, and quadruple mutants of GDH genes were deletion
constructed by crossing each mutant followed by tetrad-
dissection analysis. We compared GDH activity between a wild-type strain
(W303-1A) and its isogenic quadruple mutant strain
(ara1Δgcy1Δgre3Δypr1Δ). As shown in Fig. 2, the
Freeze-tolerance test GDH activity in the quadruple mutant was less than 15%
of that in the wild-type. A triple mutant, ara1Δgcy1-
Cells were cultured in 50 ml SD medium at 28°C to Δypr1Δ, also showed decreased GDH activity compared
stationary phase, then collected and washed once with with wild-type cells, but retained higher activity than the
distilled water. After dilution with 10 mM potassium quadruple mutant. These results indicate that GDH is
phosphate buffer (pH 7.0) to an optical density (OD) at encoded mainly by ARA1, GCY1, GRE3, and YPR1 in S.
610 nm of 1.0, 100 μl cell suspension (approximately cerevisiae. Since GDH activity was not completely
2×106 cells) was stored in a 1.5 ml sample tube at −20°C. abolished in the quadruple mutant, yeast cells presumably
Frozen cells were thawed at 25°C, and cell survival was possess other GDH isozymes and/or yet to be identified
monitored by diluting in the same buffer and plating enzyme(s) with GDH activity.
aliquots on YPD plates (2% glucose, 2% peptone, 1% We next investigated the effects of the deletion of GDH
yeast extract, 2% agar, pH 5.5). genes on the expression of other genes encoding glycerol-
metabolizing enzymes. GPDH and G3Pase are involved in
glycerol biosynthesis (Fig. 1), and are encoded by the
Preparation of frozen dough and analytical techniques genes GPD and GPP, respectively (Larsson et al. 1993;
Eriksson et al. 1995; Påhlman et al. 2001). On the other
The preparation of frozen dough was described previously hand, GUT1 encodes glycerol kinase, which phosphor-
(Murakami et al. 1996). Dough was cut into pieces of 70 g ylates glycerol to generate G3P (Pavlik et al. 1993), and
and frozen at −20°C for 7 days. Dough-leavening ability the glycerol transporter encoded by FPS1 is involved
was measured by monitoring gas production at 30°C with mainly in glycerol efflux (Luyten et al. 1995; Tamas et al.
a Fermograph (AF-1000, ATTO, Tokyo, Japan) as 1999). Both Gut1 and Fps1 function to decrease the level
reported previously (Nakagawa and Ouchi 1994). GDH of intracellular glycerol. Northern blotting analysis
activity was assayed by the method of de Vries et al. revealed no significant difference in the expression of
(2003). Intracellular glycerol was measured using a kit (F- any of these genes between the wild type and the
kit Glycerin; Roche, Mannheim, Germany). quadruple mutant (data not shown). This result suggests
that the quadruple disruption of GDH genes has little
effect on other steps that increase or decrease the level of
Northern blotting analysis intracellular glycerol.

Northern blotting analysis was performed as previously


described (Izawa et al. 1999). Probes were generated by
random labeling each DNA fragment with [α-32P]dCTP
using a kit (Random Primer DNA Labeling Kit Ver. 2;
Takara, Kyoto, Japan). The DNA fragments were
amplified by PCR using the following primers: for
FPS1, 5′-CAAGTACGCTCGAGGGTACA-3′ and 5′-
CAGGCTGAGTTCATGTCAAC-3′; for GUT1, 5′-
ATGTGGTTTGAGTTGTGGCC-3′ and 5′-TGCAATA-
GAAGGTGGAGAGG-3′; for GPD1, 5′-CCCCCCTCCA-
CAAACACAAATA-3′ and 5′-CCTCGAAAAAAGTGG-
GGGAAAG-3′; for GPD2, 5′-GCTCCCCTTCCTTAT-
CAATGCT-3′ and 5′-GGGAGAGTGTCTATTCGTCA-
TC-3′; for GPP1, 5′-TCGTAAGTATCTCTTGATTGCC-
3′ and 5′-CGGAAATGGAGGGAAATCATAC-3′; and for
GPP2, 5′-CTAGTGTTTACCAGATCAGTGG-3′ and 5′-
GGATTACCATTTCAACAGATCG-3′.

Fig. 2 GDH activity in ara1Δgcy1Δgre3Δypr1Δ cells. Cells


cultured in SD medium were collected and washed twice with
distilled water, and cell-free extract was prepared. Results are
expressed as the mean ± SD of three independent experiments
111

We further investigated the effect of decreased GDH was only slight. This indicates that glycerol is not the only
activity on intracellular glycerol levels. As shown in factor to confer freeze stress resistance on yeast cells.
Table 2, the quadruple mutant showed significantly higher Other cellular factors, such as trehalose, presumably
levels of intracellular glycerol than wild-type cells. A contribute to maintenance of freeze stress tolerance.
slight increase in the level of intracellular glycerol was
observed in the triple mutant. These results suggest that
decreased GDH activity leads to the accumulation of Intracellular-glycerol-enriched cells are tolerant of
intracellular glycerol. Taken together with the results of freeze stress
Northern blotting analysis, the increased level of intracel-
lular glycerol in the quadruple mutant seems to be caused Above, we have shown a possible correlation between
mainly by repression of the reaction catalyzed by GDH. intracellular glycerol and resistance to freeze stress. We
further tested whether intracellular-glycerol-enriched cells
acquire resistance to freeze stress. Glycerol is taken in by
Deletion of GDH genes leads to increased resistance yeast cells not only by specific transporters such as Gup1
to freeze stress and Gup2 but also by passive diffusion (Luyten et al.
1995; Sutherland et al. 1997; Holst et al. 2000). Thus, we
To estimate the effect of intracellular glycerol on viability cultured cells under glycerol-rich conditions to increase
under freeze stress, we determined the freeze tolerance of levels of intracellular glycerol. Wild type cells (W303-1A)
the GDH mutants. As shown in Fig. 3, wild-type cells were cultured in SG medium at 28°C until stationary
showed a sharp decline of viability during storage at phase. As expected, cells grown in SG medium showed
−20°C. On the other hand, the number of viable cells of levels of intracellular glycerol approximately 3- to 4-fold
the quadruple mutant decreased gradually during the higher than cells in SD medium (Fig. 4a). The quadruple
storage period. The survival rate of the quadruple mutant mutant (ara1Δgcy1Δgre3Δypr1Δ) grown in SG medium
was apparently higher than that of the wild type, indicating to stationary phase had levels of intracellular glycerol
that the quadruple disruption of GDH genes improved the almost identical to those of wild type cells (Fig. 4a). No
tolerance to freeze stress. We also investigated the freeze significant effect of decreased GDH activity was observed
tolerance of the single, double, and triple GDH gene on intracellular glycerol content when cells were grown in
mutants. No apparent difference in tolerance was observed SG medium to stationary phase. Such intracellular-glyc-
between the wild type, single mutants, and double mutants erol-enriched cells were remarkably tolerant to freeze
(data not shown). The survival rate of the triple mutant stress (Fig. 4b). Both the wild type and the quadruple
(ara1Δgcy1Δypr1Δ) was slightly higher than that of the mutant showed almost identical tolerance to freeze stress,
wild type but lower than that of the quadruple mutant. and their tolerances to freeze stress were higher than that
These results seems reasonable, since single and double of ara1Δgcy1Δgre3Δypr1Δ cells grown in SD medium
mutants of GDH genes showed no significant increase in (Figs. 3, 4b). This result strongly supports the idea that
intracellular glycerol contents (data not shown) and the intracellular glycerol plays a role in the resistance to freeze
ara1Δgcy1Δypr1Δ cells showed a slight increase
(Table 2). These results suggest that the increased level
of intracellular glycerol caused by the disruption of GDH
genes enhanced the freeze tolerance of yeast cells. On the
other hand, the GPDH-deficient mutant (gpd1Δgpd2Δ)
was sensitive to freeze stress compared to the wild type
(Fig. 3). We confirmed that the gpd1Δgpd2Δ mutant
contains decreased levels of intracellular glycerol
(Table 2). It is likely that decreased levels of intracellular
glycerol partly affect the sensitivity to freeze stress of
gpd1Δgpd2Δ cells. However, the difference in the freeze
tolerance between the gpd1Δgpd2Δ mutant and wild type

Table 2 Intracellular glycerol levels in various yeast strains. Cells


cultured in SD medium were collected and washed twice with
distilled water, and the intracellular glycerol contents were mea-
sured. Results are expressed as the mean ± SD of three independent
experiments
Strain Intracellular glycerol (μmol/mg cells) Fig. 3 Freeze stress tolerance in various yeast strains. Freeze stress
tolerance of cells was determined by measuring viability at −20°C
Wild type 31±2.4 for 7 days. Percent survival was expressed relative to the initial
ara1Δgcy1Δypr1Δ 34±3.2 viability prior to freezing. Results are representative of three
ara1Δgcy1Δgre3Δypr1Δ 50±4.4 independent experiments. Open circles Wild-type cells, closed
gpd1Δgpd2Δ 3.2±1.8 circles ara1Δgcy1Δgre3Δypr1Δ, triangles ara1Δgcy1Δypr1Δ,
squares gpd1Δgpd2Δ
112

stress, and clearly indicates that increased levels of evolved in 5 h from frozen/thawed dough and non-frozen
intracellular glycerol confer improved freeze stress toler- dough. Before freezing, there was a slight difference in
ance on yeast cells. gassing power between the glycerol-enriched cells cul-
tured in SG medium and the normal cells cultured in SD
medium. However, a marked difference was observed in
Intracellular-glycerol-enriched cells showed improved frozen/thawed dough. The intracellular-glycerol-enriched
leavening ability in frozen/thawed dough cells retained high gassing power after storage at −20°C
for 7 days, whereas normal cells lost significant gassing
To determine whether intracellular-glycerol-enriched cells power during storage (Fig. 5). The difference in gassing
are useful for the frozen dough method, we measured the power between the intracellular-glycerol-enriched cells
leavening ability of wild-type cells (W303-1A) in dough and normal cells seems to reflect their viability after frozen
after frozen storage. Figure 5 shows the amount of CO2 storage (Fig. 4b).

Discussion

We demonstrated here that disruption of four GDH genes


(ARA1, GCY1, GRE3, and YPR1) led to decreased activity
of GDH and increased levels of intracellular glycerol
(Fig. 2, Table 2). Northern blotting analysis indicated that
the decrease in GDH activity seems not to affect other
steps of glycerol metabolism (data not shown). These
results clearly suggest that blocking the dissimilation of
glycerol is an effective approach to increase the level of
intracellular glycerol along with activation of the biosyn-
thesis of glycerol. Our quadruple mutant still retained
GDH activity (Fig. 2) and the YJR096w gene has recently
been reported as a candidate encoding glycerol dehydro-
genase (Träff et al. 2002). A quintuple mutation of GDH
genes and YJR096w, or the combined mutation of GDH

Fig. 4 Effect of cultivation in SG medium on the level of Fig. 5 Gas production of yeast in frozen/thawed dough. White
intracellular glycerol. a Wild type cells (W303-1A) cultured in SD bread dough (70 g) was prepared using glycerol-enriched and
or SG medium and ara1Δgcy1Δgre3Δypr1Δ cells cultured in SG normal wild-type cells (W303-1A) cultured in SD or SG medium.
medium were collected and washed twice with distilled water, and After storage at −20°C for 7 days, the dough was thawed at 30°C;
intracellular glycerol contents were measured. Results are expressed remaining gassing power was measured and compared with that of
as the mean ± SD of three independent experiments. Lanes: 1 Wild- non-frozen samples. Results are representative of four independent
type cells cultured in SD medium, 2 wild-type cells in SG medium, experiments. Open squares Non-frozen dough with normal cells
3ara1Δgcy1Δgre3Δypr1Δ cells in SG medium. b Freeze stress cultured in SD medium, open circles non-frozen dough with
tolerance of cells was determined as described in Fig. 3. Circles glycerol-enriched cells cultured in SG medium, closed squares
Wild-type cells cultured in SD medium, triangles wild-type cells frozen/thawed dough with normal cells cultured in SD medium,
cultured in SG medium, squares ara1Δgcy1Δgre3Δypr1Δ cells in closed circles frozen/thawed dough with glycerol-enriched cells
SG medium cultured in SG medium
113

and other enzymes that dissimilate glycerol, such as Gut1, tions in the baking industry, these methods seem onerous
might lead to a much greater accumulation of glycerol. and not suited to win the admiration of consumers. On the
We also found that the quadruple mutant (ara1- other hand, cultivation in SG medium to stationary phase,
Δgcy1Δgre3Δypr1Δ) showed more resistance to freeze- the method used in this study, is a relatively simple way to
thaw stress than the wild-type cells (Fig. 3). On the other increase intracellular glycerol, and one which could be
hand, gpd1Δgpd2Δ cells showed lower levels of intra- applicable to commercial yeast strains.
cellular glycerol and were more sensitive to freeze stress
compared with wild-type cells (Table 2, Fig. 3). These Acknowledgements We are grateful to Dr. W. Bandlow
findings suggest that intracellular glycerol plays an (gcy1Δ∷LEU2) and Dr. S. Harashima for providing yeast strains
important role in the tolerance to freeze stress. This idea and plasmids. We also thank Mr. T. Tanaka and Mr. T. Suzuki for
their technical support in the construction of yeast mutants. This
was supported by analysis of intracellular-glycerol-en- study was supported by the Iijima Memorial Foundation for the
riched cells (Figs. 4, 5), which retained higher gassing Promotion of Food Science and Technology and Bio-oriented
power in frozen/thawed dough than normal cells (Fig. 5). Technology Research Advancement Institution (BRAIN).
Our data suggest that glycerol can function as quite a
useful cryoprotectant even inside the cell. There is also the
possibility that intracellular glycerol indirectly affects the References
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