Professional Documents
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FUNCTIONAL GROUPS
AND THE MOLECULES
OF BIOCHEMISTRY
1009
The arrangement of the functional groups — N 0 2 or —NH 2 makes a
vast difference in the taste of the following three compounds.
NH2 N0 2 N0 2
tasteless 4100 times sweeter bitter
than suiiar
TABLE 32.1
Chemistry has come a long way in predicting the effects on
Some common functional groups
chemical and physical properties of variations in the groups at
Compound structure tached to organic compounds. However, we do not yet know the
{functional group0 explanation for many of the subtle relationships between structure
in color) Compound name
and biochemical activity. The study of such relationships is at the
R—X Alkyl halide frontier of scientific research today.
R—OH Alcohol
Ar—OH Phenol
ROR Ether 32.1 Functional groups
R—NH2 Amine
If one of the hydrogen atoms of the water molecule is replaced by one
R—C=0 Aldehyde of the various saturated alkyl groups, the series that begins with
I CH3OH results.
n
R2C=0 Ketone HOH
R—C=0 Carboxylic acid CH3OH
I CH3CH OH
OH CH3CH2CH2OH
Amide CH.CHXHXH.OH
R—C=0 etc.
I
NH2 Acyl halide These compounds can all be represented by the general expression,
R —XC = 0 ROH, where, except for water, R is some collection of carbon and hy
drogen atoms.
R -C- -0—C—R Acid anhydride
The chemistry of these compounds is dominated by the OH
() O group. All compounds of the formula ROH exhibit similar chemical
R—C=0 Ester behavior, no matter how long the continuous chain of carbon atoms
I may be. Saturated hydrocarbons, you will recall (Section 23.4), are
relatively unreactive, so we should not expect the hydrocarbon part
OR Nitroalkane to overshadow the waterlike part. The compounds of the family re
R—N02 Sulfonic acid presented by the formula ROH are collectively called alcohols, and
R—S03H Nitrile the OH group is referred to as a functional group. A functional group
R—CN is an atom or group that bonds to one or more carbon atoms in an
" Ar is the abbreviation used for an aromatic organic molecule and contributes a characteristic chemical behavior
group, such as the phenyl group (C e H 5 ). to the molecule.
X represents any halogen atom.
Table 32.1 lists the most common functional groups. Large and
even not so large molecules can contain many functional groups of
[32.1J ORGANIC CHEMISTRY different types.
1010
Functional groups with
covalent single bonds Alky l halides, RX
Aryl halides, ArX
O
I) and form alkenes, for example,
132
CH3CH2CH2Br — — — > CH 3 CH=CH 2 + NaBr + H 2 0
1 , . , alcohol, heat , chlorobenzene
propyl bromide propylene
1011
H Cl Cl
α^ί\-ί^ί~Υα
Insecticides
Cl —C—Cl
I
Cl Cl
DDT Chlordane
\1,1,1 -trichloro-2,2-his
(p-chlorophenyl)ethane |
Cl
,P /
0
Herbicides Cl—^ 7—OCH 2 C OCH 2 C
\
OH
2,4-D
[(2,4-dichlorophenoxy)acetic acid \
2,4,5-T
[(2,4,5-trichlorophenoxy)acetic acid}
Fungicide
cv ^γ xi
Cl
PCP
(pentachlorophenol)
TABLE 32.3 ever, some of the compounds listed in Table 32.3 have come under
Chlorinated hydrocarbon criticism for (1) their long persistence in the environment and/or (2)
pesticides their toxicity to both m a n and animals. Aldrin and a structurally sim
ilar compound, dieldrin, have now been banned, and the use of DDT
and chlordane is carefully restricted. 2,4,5-T, an herbicide used as a
defoliant during the Vietnam war, has been suspected of causing
genetic defects. However, these effects seem to be due to the presence
of small amounts of a very highly toxic impurity, dioxin.
Cl O Cl
Cl o Cl
dioxin
a very toxic substance
32.3 Alcohols
In organic compounds, the OH group is usually covalently bonded
and is called the hydroxyl group. The ending ol indicates the presence
[32.2] ORGANIC CHEMISTRY of a functional —OH in an organic molecule. Alcohols have the gen-
1012
eral formula ROH. The generic n a m e for alcohols is alkanol when R
is saturated, alkenol when R is olefinic, and alkynol when R is acety-
lenic. (When R is aromatic, the compound is a phenol; next section.) Alcohols, ROH
In the common system of nomenclature, the R group is named
and the word alcohol follows, as in methyl alcohol (CH3OH) and cy-
clohexyl alcohol (C 6 H n OH). Ethyl alcohol (C2H5OH) is the common
beverage alcohol. In the IUPAC system of nomenclature, the n a m e is TABLE 32.4
derived from the longest hydrocarbon chain that includes the OH Alcohols
group by dropping the final e and adding ol, as in methanol, ethanol, The general molecular formula for an
and cyclohexanol. When necessary, a n u m b e r is used to show the po alcohol is ROH
sition of the OH group. Numbering starts at the end of the chain
nearest to the OH group. Table 32.4 provides a few examples. Boiling point
(°C)
Alcohols are classified as primary, secondary, or tertiary, de
pending on whether the carbon atom to which the hydroxyl group is CH 3 OH 65
attached is primary, secondary, or tertiary. Like water the alcohols methyl alcohol
exhibit hydrogen bonding, which causes their boiling points to be {methanol)
relatively high.
Methanol, once known as wood alcohol because of its formation CH 3 CH 2 OH 78
during wood distillation, is now made synthetically from carbon ethyl alcohol
{ethanol)
monoxide and hydrogen in quantities exceeding those of most other
synthetic organic chemicals (5000 million pounds in 1975). CH 3 CH 2 CH 2 OH 97
propyl alcohol
CO(g) + 2H2(g) -±> CH3OH(g) {1-propanol)
ß-phenylethyl alcohol
CH 2 =CH 2 + H 2 S0 4 > CH3CH2OS03H —% CH3CH2OH + H 2 S0 4 {2-phenylethanol)
1013
reaction of water with ethylene, which is readily available from
petroleum refineries.
heat, catalysts,
TABLE 32.5
Fermentation, however, is still the preferred method of obtaining
Alcoholic beverages ethyl alcohol for beverages, many of which retain flavors character
istic of the material that was fermented (Table 32.5). After fermenta
Beverage Starting material tion, a solution contains up to 14% ethyl alcohol. Except for wines
and beer, this solution is distilled to remove water and increase the
Whiskey Grains (rye, corn, wheat, oats,
barley)
alcohol content. Up to 95% ethyl alcohol by weight, which is the com
position of a constant-boiling mixture of alcohol and water, can be
Rum Molasses
obtained by distillation. The usual 80-proof beverage is a 40% solu
Brandy Grapes and other fruits
tion of ethyl alcohol.
Gin Grains (distilled and flavored Absolute ethyl alcohol, 100% or 200 proof, is made by removing
with juniper berry)
the remaining water from 95% ethyl alcohol by distillation with ben
Vodka Potatoes and corn zene or by chemical means. (An azeotropic mixture of benzene, al
Wines Grapes cohol, and water distills at 65°C and removes the last few percent of
Sake Rice water.) Ethyl alcohol for beverages is subject to a federal tax. In order
Mead Honey to render industrial ethyl alcohol unfit for drinking, various toxic or
objectionable materials (e.g., methanol) that are difficult to remove
Beer Barley and hops
from ethyl alcohol are added. This denatured alcohol is tax-free, hence
Tequila Cactus
much cheaper for industrial users.
Like water, alcohols can act as either acids or bases. As acids,
they are even weaker than water, however. In the presence of rela
tively strong bases, alcohols donate protons. For example, reaction of
alcohols with active metals such as Li, Na, K, Mg, or Al gives a class
of compounds known as alkoxides, RO~M + . The reaction of ethyl al
cohol with sodium
CH,OH + HBr CH 3 Br + H 2 0
CH 2 OH CH 2 ON0 2
CHOH + 3 H N 0 3 CHONO, | N 2 + 3C0 2 + fH 2 0 + i 0 2
CH 2 OH CH 2 ON0 2
glycerol glyceryl trinitrate
[32.3] ORGANIC CHEMISTRY {nitroglycerin)
1014
Nitroglycerin is also useful in the treatment of heart disease because
of its action in dilating blood vessels.
Phenols, ArOH
32.4 Phenols
The attachment of a hydroxyl group to an aromatic ring gives a class TABLE 32.6
of organic compounds known as phenols, ArOH. The simplest com Phenols
pound in the group is phenol itself, C 6 H 5 OH (Table 32.6). The structu The general molecular formula of a
ral similarity of phenols to alcohols is apparent. However, the aro phenol is ArOH
matic ring modifies the chemical behavior of the hydroxyl group.
Melting point (°C)
Phenols are weak acids; most of them have pKa values of about 10,
which makes them much stronger acids than alcohols. The acidity of OH
phenols arises in part because the aromatic ring delocalizes the nega
tive charge on the anion; for example,
42
/ \-OH^=^H+ +
OH ^IsHoi ca techoi
urushiol
N02 CH2vCH2)4CH3
picric acid hexylresorcinol
ORGANIC CHEMISTRY [32.4]
1015
(methylphenols) (Table 32.6). Phenols are also used in the manufac
ture of dyes, drugs, photographic developers, adhesives, and a large
Ethers, ROR variety of other products. Picric acid (Table 32.7) is a strong acid and
a high explosive. Many phenols occur naturally, for example, the ac
tive component in poison ivy (urushiol, Table 32.7) and several essen
tial oils (oil of cloves, oil of aniseed).
One method for the preparation of phenol itself is illustrated by
the following equations.
ci+ 2NaOH
TABLE 32.8
Ethers
C^
chlorohenzene
-> C \— ONa+ + H 2 0 + NaCl
sodium
The general molecular formula for an phenoxide
ether is ROR
1016
TABLE 32.9
Note that the two isomers differ in structure only in the position of one double Tetrahydrocannabinol
bond, but differ considerably in activity.
{active ingredient in marijuana)
isomeric double bond isomeric
double bond
CH, major activity CH3
from this isomer
ΟϊΗη C,H,
TABLE 32.10
dramatically exposed by a comparison of the boiling points of ethyl-
ene glycol (HOCH 2 CH 2 OH, b.p. 197°C) and 1,2-dimethoxyethane Classification of amines
(CH 3 OCH 2 CH 2 OCH 3 , b.p. 85°C). Primary amine, RNH 2
The ethers are rather unreactive and are often used as solvents in CH,NH2
carrying out reactions. However, ethers do have an unfortunate tend methylamine
b.p. -6°C
ency to form peroxides (compounds containing—O—O— bonds) when
exposed to the oxygen in air. These peroxides are susceptible to explo Secondary amine, R 2 NH
(CH,),NH
sive decomposition and for this reason special precautions must dimethylamine
always be used when working with ethers. b.p. 7°C
Diethyl ether, a volatile and flammable liquid, is often used as a Tertiary amine, R.,N
general anesthetic and is an excellent solvent. The ether linkage is (CH,),N
trimethvlamine
found in many naturally occurring compounds, among them tetrahy- b.p. 3°C
drocannabinol, which in its two isomeric forms (Table 32.9) is the
Quaternary ammonium salt, R 4 N + X _
active component in marijuana and hashish from the hemp plant.
(CH,) 4 N + I-
Ethers can be obtained from alcohols by intermolecular dehy tetramethylammonium iodide
dration, a method that is used industrially. m.p. 230°C (dec)
cone. H 2 S0 4
2CH3CH2OH CH 3 CH 2 OCH 2 CH 3 + H 2 0
heat
ethyl diethyl ether
alcohol TABLE 32.11
Aromatic and cyclic amines
1017
the nitration of an aromatic compound and subsequent reduction of
the nitro group, N 0 2 , with, for example, tin and concentrated hydro
chloric acid.
Ο^ΟΝΟ·^0-ΝΗ·+2Η·°
benzene nitrobenzene aniline
In this reaction the ethylamine can react further with ethyl chloride
to form diethylamine, which can then react to form triethylamine.
The mixture from the reaction of an alkyl halide with ammonia nor
mally contains all of the possible amines (RNH 2 , R 2 NH, R 3 N), as well
as the quarternary a m m o n i u m salt, R 4 NX. Amines with unlike
groups attached to the nitrogen atom are attainable by an extension
of this method.
,CH3
/ ^ - N H 2 + 2CH3Br > / YN
- + 2HBr
CH3
aniline N ,N-dimethylaniline
b.p. 193°C
Amines are basic. Like ammonia, they form salts with acids.
.OH
02N / \ N2C1 +
p-nitrobenzene- 2-naphthol
diazonium chloride
N0 2
+ HC1
para red
an azo dye
1019
in molecular structure must accompany the change in color. This
change is expressed in the following equation.
yellow
NaO:,S N(CH,)2
red
c=o
<f~VcHO 179
δ+ δ-
\ /
benzaldehyde 0:0:
/
" Note that the aldehyde group must be at a carbonyl group
the end of a chain, so it is unnecessary to
write 1-hexanal.
Like the covalent double bond between two carbon atoms, the cova
lent double bond in a carbonyl group is a combination of a <x bond
[32.6] ORGANIC CHEMISTRY and a π bond. The carbonyl group and its two attached groups lie
1020
in the same plane and include an sp2-type carbon atom with valence
angles near 120°. The actual molecular structure of the carbonyl
group is a hybrid of the two principal resonance structures shown
above. In effect, the carbon atom is slightly positive and the oxygen
atom is slightly negative. The greater electronegativity of the oxygen
atom plays a role in establishing this bond polarity.
The carbonyl group is present in aldehydes and ketones, and in Ketones, R 2 C = 0
the rest of the functional groups discussed in this chapter.
An aldehyde, RCHO, is a compound in which a hydrogen atom
and a hydrocarbon group are bonded to a carbonyl group (Table
32.13). In the simplest possible case, R is a hydrogen atom also. The
common names of the aldehydes are derived from the names of the
carboxylic acids (next section) containing the same carbon skeleton
by replacing the final ic by aldehyde. Thus, formaldehyde, HCHO, is TABLE 32.14
the aldehyde corresponding to formic acid, HCOOH. The IUPAC Ketones
system of nomenclature for aldehydes requires only the replacement The general molecular formula for a ketone,
of the final e of the name of the longest-chain hydrocarbon including often written as R2CO or RCOR', and
the aldehyde group by al. Substitutions or branches along this main in which Rand R' may be the same or
chain are designated by n u m b e r s (the carbonyl carbon atom is num different, is R
bered 1) and names by prefixes. Table 32.13 gives several examples. / C = 0
Formaldehyde is used mainly in the manufacture of p h e n o l - R'
formaldehyde resins. It also finds some use as a disinfectant and a
preservative, often as formalin, a 37% aqueous solution of formalde Boiling point
hyde. Trichloroacetaldehyde, Cl 3 CCHO, forms a hydrate, chloral hy (°C)
drate Cl 3 CCH(OH) 2 , that is a sleep-inducing drug. CH3COCH3 56
Several aldehydes have been isolated from fruits, to which they dimethyl ketone {acetone)
contribute characteristic odor and taste. Citral, a terpene aldehyde, is (2-propanone)
found in the oil from citrus fruits and in oil of lemon grass. It has a
strong lemonlike odor. Vanillin is used as a vanilla flavoring agent. CH3CH2COCH2CH3 102
diethyl ketone
OH (3-pentanone)
OCH,
CH3C = CHCH2CH2C=CHCHO CH3COCH2CH2CH3 102
methyl n-propyl ketone
CH3 CH3 (2-pentanone)
CHO
citral vanillin CH3COCOCH3 88
(3,1'-dimethyl-2,6-octadienal) biacetyl" (dimethylglyoxal)
(2,3-butanedione)
A ketone, R 2 C = 0 , contains two hydrocarbon groups attached to
the carbon atom of the carbonyl group (Table 32.14). In the common
system of nomenclature, the two hydrocarbon groups are named, fol f Y-COCH3 200
lowed by the word ketone, as in methyl ethyl ketone, CH 3 COCH 2 CH 3 .
Dimethyl ketone is almost always referred to by its trivial name, ace methyl phenyl ketone
(acetophenone)
tone. In the IUPAC system of nomenclature, a ketone is designated by
the suffix one, which replaces the final e of the n a m e of the longest- a
This is one of the few colored (yellowish
chain hydrocarbon containing the carbonyl group. A number is nor green) organic liquids. Practically all pure
mally used to show the position of the carbonyl group, starting at the organic liquids are colorless; many pure
solids are colored, however.
end of the chain nearest the carbonyl group. Thus, methyl ethyl ke
tone is 2-butanone in the IUPAC system. Substitutions and branches
on the main chain are treated as before (Section 23.4). Table 32.14
gives several examples.
Ketones are used extensively as solvents, especially in lacquers ORGANIC CHEMISTRY [32.7]
1021
TOOLS OF .bsorption spectra arise when energy from incoming radiation is
CHEMISTRY absorbed, causing atoms, molecules, or ions to move into a higher en
ergy state. Among the valuable tools of the organic chemist are infra
red (IR) and ultraviolet (UV) absorption spectroscopy.
Infrared and The infrared region of the electromagnetic spectrum extends from
2.5 /xm to 15 μπ\ (1 μπι = 1 x 10~4 cm = 1000 nm). Infared spectra
ultraviolet originate in an increase in energy level of the motions of atoms in a
molecule relative to each other. The atoms in a molecule are never
spectroscopy motionless. They may, for example, bend or stretch (Figure A) or un
dergo other motions known as wagging, rocking, deformation, and so
on. When the motion involves a change in dipole moment, and when
the frequency of incoming radiation matches the frequency of the
motion, absorption occurs and a "peak" appears in the infrared spec
trum. Figure B shows the spectra of ethylene glycol and ethylene
diamine with the origins of many of the peaks identified
(str = stretching; def = deformation; wag = wagging). Customarily
. . — ►
in infrared spectra the percent of the radiation transmitted (% trans-
mittance) is plotted versus the wavelength (in μ,πι, for example) or
wave numbers (in cm - 1 )·
The more complicated a molecule is, the more possibilities there
(a) are for relative motions of the atoms. Therefore, infrared spectra can
be quite complex, and the larger the molecule, the more peaks will
appear in the spectrum. In spectra with many peaks, identification of
the origin of all the peaks is difficult.
Infrared spectra are most useful in two ways. One depends upon
the fact that the same functional groups cause absorption at the same
or close to the same wavelength in the spectra of all the molecules in
which they occur. From the study of the spectra of thousands of com
pounds "correlation c h a r t s " have been assembled. These charts show
the location of peaks that result from the presence of specific groups
of atoms. A small portion of a correlation chart is shown in Figure C.
This segment includes the location of the peaks of functional groups
that contain a carbon-nitrogen single bond.
(b)
In the determination of the structure of an unknown compound,
FIGURE A the infrared spectrum is used to indicate which functional groups are
present by comparison of the spectrum with such charts. This is often
not as simple and straightforward as it sounds, but with experience,
much useful information about structure can be gleaned from infra
red spectra. For example, an experienced observer would quickly
FIGURE B know from the two spectra in Figure B that one compound contained
Infrared spectra of ethylene glycol OH groups and the other, NH 2 groups.
(1,2-ethanediol) and ethylenediamine Infrared spectra, like mass spectra, are also used as fingerprints.
(1,2-diaminoethane). It has been said that the infrared spectrum of a compound may be its
μιτι
11 12 13 14 15
1022
M
C-N •M Primary amine aryl-NH 2
-NH2 NH2-- -NH2 --Ü
W _NH Secondary amine aryl-NH-
aryl-N — NH2 (broad)
—-CH2-NH-CH2
Tertiary amine CH2-NH-CH2--
N(CH2)2.-N(CH3)2-- aryl-N(CH 3 ) 2 -
S
■ C -NH; Ammonium ion _NH;-—T—
Primary amine salt -NH3-.
♦ Secondary amine salt
NH
~ Tertiary amine salt
3600 3200 2800 2400 2000 1900 1800 1700 1500 1400 1100 1000 900 800 700 600
CH3CH2OH
Na 2 Cr 2 0 7 I
H 2 SO, ► CH3C=0 + H20
ethyl alcohol acetaldehyde
phenacyl a primary alcohol
chloride
camphor Na,Ct 2 0 7
CH3CHCH3 CH 3 CCH 3 + H 2 0
H 2 S0 4
OH o
O ^ ^ CH3 i sop ropy I alcohol acetone
a secondary alcohol
CH 3 CH 2 C C—CH2CHN(CH3)2
A ketone is resistant to further oxidation under these conditions,
but an aldehyde is readily oxidized to the corresponding carboxylic
acid (next section). This method for the preparation of aldehydes re
methadone quires the immediate removal of the aldehyde from the reaction
medium, a circumstance that limits the method to quite volatile al
dehydes.
Commercially, the conversion of an alcohol to an aldehyde or ke
tone is often effected by passing the alcohol vapor and air over a
heated copper catalyst in a dehydrogenation reaction—a reaction in
which H 2 is removed.
H
Cu 3Q0 C
CH3CH2OH ' ° ) CH3C=0
Cu 300 C
CH3CHCH3 ' ° > CH3CCH3
OH O
H
I
CH,C=0 > CH3COH
O
acetic acid
a carboxylic acid
Even atmospheric oxygen will bring about the conversion of many al
[32.7J ORGANIC CHEMISTRY dehydes to the corresponding acids. A very mild oxidizing agent,
1024
[Ag(NH 3 ) 2 ]OH, called Tollens' reagent, provides a diagnostic test for
aldehydes.
Carboxylic acids, RCOOH
RCHO + 2[Ag(NH3)2]OH 2Ag + RCOONH4 + H 2 0 + 3NH3
When this reaction is carried out in a clean test tube, the elemental
silver that forms deposits as a silver mirror on the walls of the test
TABLE 32.16
tube. A process for the silvering of mirrors utilizes this reaction.
Carboxylic acids
The general molecular formula for a
carboxylic acid, often written RCOOH or
RC02H, and in which R can be a
32.8 Carboxylic acids hydrogen atom, is
RC OH
A carboxylic acid, RCOOH, has a functional group that is a combina 0
tion of a carbonyl group and a hydroxyl group
Boiling point (°C)
O
HCOOH 101
II formic acid
RCOH {methanoic acid)
a carboxylic
acid
CH3COOH 118
The more familiar carboxylic acids carry common names that are as acetic acid
{ethanoic acid)
sociated with the sources from which they were first isolated. In the
IUPAC system of nomenclature, the ending oic replaces the final e of
the hydrocarbon n a m e that is formed from the longest continuous CH 3 CH 2 COOH 140
propionic acid
chain of carbon atoms including the carboxyl group. The word acid {propanoic acid)
follows this derived n a m e . When this chain of carbon atoms is num
bered, the carboxylic carbon atom is numbered 1. Table 32.16 shows
CH 3 CH 2 CH 2 COOH 163
the structures and names of some of the more common carboxylic butyric acid
acids. {butanoic acid)
Simple, unsubstituted monocarboxylic acids have pKa values in
the range 4 - 5 ; they are weaker as acids than sulfonic acids (RS0 3 H) CH2=CHCOOH 140
but stronger than phenols (Section 32.4). The ionization of a carbox acrylic acid
{propenoic acid)
ylic acid, as shown, produces the carboxylate ion, RCOO".
Melting point (°C)
RC=0;
J3 /°"
H+ + RC' <—> RC^
COOH
I
OH
o-
a carboxylate ion
o
0^ benzoic acid
121
(X
the two oxygen atoms. COOH 230
All of the carboxylic acids form salts when they are treated with
bases (e.g., hydroxides, carbonates, or bicarbonates). COOH
phthalic acid
+
CHgCOOH + N a O H CH3COONa + H20
acetic acid sodium acetate
{ethanoic acid) {sodium ethanoate)
1025
TABLE 32.17
Some additional carboxylic acids COOH CH2COOH
COOH H —C—OH HO — C —COOH
1
— C —OH HO — C — H CH2COOH
1 1
1 1 citric acid
CH,
lactic acid COOH
tartaric
acid
HO H2
V C* H (CH2)3COOH
/ Ύ CH=C
r ^ C ^ ^C-(CH2)4CH3
HO H H1 OH
prostaglandin FUt
(one of several prostaglandins)
TABLE 32.18
Esters of carboxylic acids
The general molecular formula for a
carboxylic acid ester, often written as
RCOOR' or RC0 2 R', and in which R and Acetic acid is produced in large quantities (2000 million pounds
R' may be alike or different, is in 1975) for use in making plastics and solvents. Phthalic acid is also
R—C—O—R' widely used in the production of varnishes, paints, and plastics (4000
million pounds in 1975).
0 Many carboxylic acids occur in nature, either free or combined in
some form. The combination of hydroxyl groups and carboxylic acid
Boiling point (°C)
groups in the same molecule to give hydroxy acids is very common in
HCOOCH3 32 nature. Lactic acid (Table 32.17) is found in sour milk (racemic form)
methyl formate and in the muscles of m a n and animals (dextrorotatory isomer). Tar
(methyl methanoate)
taric acid (dextrorotatory isomer) occurs in many fruits. Citric acid
occurs in both plants and animals; lemon juice contains 5-8% citric
CH 3 COOCH 2 CH 3 77 acid.
ethyl acetate
(ethyl ethanoate) Currently there is considerable interest in some physiologically
active substances called prostaglandins (Table 32.17). These sub
stances are found in many body tissues and fluids, but they seem to
CH2=CHCOOCH3 85
methyl acrylate occur in greatest amounts in h u m a n and sheep seminal plasma. Be
{methyl propenoate) cause of their broad physiological activity, high hopes are held for
their use in medicine, particularly with respect to induced abortion,
prevention of conception, and the regulation of menstruation and fer
ζ V-COOCHg 198 tility.
methyl benz.oate
32.9 Esters
jCOOC2H5 298
A compound in which the acidic hydrogen atom of a carboxylic acid
molecule is replaced by a hydrocarbon group is an ester, RCOOR',
"COOC 2 H 5
diethyl phthalate
for example
CH 3 COCH 3
132.8] ORGANIC CHEMISTRY methyl acetate
1026
In the two-word name for an ester, the first word is the name of the
R' group in RCOOR'. This word could be methyl (CH3), ethyl (C 2 H 5 ),
phenyl (C6H5), or the like. The second word of the n a m e is the n a m e of Esters, RCOOR'
the carboxylic acid with the final ic replaced by ate, identical with the
name of the carboxylate anion. Table 32.18 illustrates the common
and IUPAC system names.
Esters of the lower carboxylic acids and lower alcohols, for ex
ample, ethyl acetate and butyl acetate, are used extensively as sol
vents. Most esters of carboxylic acids have quite pleasant odors, even
when derived from rather foul-smelling acids. Many fruits and flow
ers owe their flavor and fragrance to the esters present (Table
32.19); esters are often used as artificial flavors.
Aspirin, the popular fever reducer and pain killer, is an ester
formed between acetic acid, CH 3 COOH, and salicylic acid. When the
aspirin reaches the alkaline environment of the intestines, the sali
cylic acid is liberated. Salol (phenyl salicylate) is used to coat a pill
when it is desired that the pill pass through the stomach unchanged
and release its contents in the intestines. (Such a coating is called an
enteric coating.) The salol coating is inert to the acidic conditions in
TABLE 32.19
The natural flavoring and odor of a food arise from a combination of a large group
of substances and not from just a single compound. For example, the total
Characteristic odors of some
number of flavoring substances in the strawberry is over 250. These substances esters
are esters, alcohols, carboxylic acids, aldehydes, ketones, and several other
classes of organic compounds.
CH 3 CH 2 CH 2 COO(CH 2 ) 4 CH 3 Apricot
amyl butyrate
CH 3 CH 2 CH 2 COOC 2 H 5 Pineapple
ethyl butyrate
COOCH 3 Grape
NH2
methyl anthranilate
OH Wintergreen
COOCH 3
methyl salicylate
ORGANIC CHEMISTRY [32.9]
1027
the stomach, but it is hydrolyzed and dissolves in the alkaline intes
tines.
o
II
OH 0CCH3 OH
O
salicylic aspirin salol
acid (acetylsalicylic acid) (phenyl salicylate)
(C 2 H 5 0) 2 PSCHCOOC 2 H 5
S CH 2 COOC2H 5
malathion
O
H 2 S0 4 ||
CH3C=0 + CH 3 CH 2 OH < CH 3 C—OCH 2 CH 3 + H 2 0
OH
acetic acid ethvl alcohol ethvl acetate
The hydrogen ion from the sulfuric acid attaches to the oxygen atom
of the carbonyl group, thereby enhancing the positive character and
the reactivity of the carbonyl carbon atom.
The hydrolysis of an ester is the reversal of the reaction leading
to its formation.
O
II : CH 3 COOH + CH 3 CH 2 OH
CH 3 C—OCH 2 CH 3 + H 2 0 :
ethyl acetate acetic acid ethvl alcohol
1028
H20
CH3COOCH2CH3 + NaOH CH3COONa + CH3CH2OH
ethyl acetate sodium acetate ethyl alcohol
Acyl halides, RCOX
The saponification reaction is initiated by the attachment of the hy Acid anhydrides, (RCO) 2 0
droxide ion, a relatively good nucleophile, to the carbonyl carbon
atom.
Ό
RC(
an acyl group
O O O O
II II II II
RCOH + HOCR RC—O—CR + H 2 0
TABLE 32.20
COC1
Λ
CH3C=0 Acyl halides and carboxylic acid
U
anhydrides
Cl
Q2
CH 3 C=0
>
CH 3 C=0
ΓΛ c—o—c
^ /
o o
acetic anhydride phthalic anhydride benzoic anhydride
(ethanoic anhydride) m.p. 13J°C m.p. 42°C
h.p. 138°C
ORGANIC CHEMISTRY [32.10J
1029
The acyl halides, usually the chlorides, are used almost exclu
sively for the synthesis of other compounds. Acid anhydrides, partic
Amides, RCONH 2 ularly acetic anhydride and phthalic anhydride, are valuable in the
synthesis of esters, for example,
O O
C H X O C C H , + CH,CH2OH CH,COOCH2CH, + CH,COOH
TABLE 32.21 acetic ethyl ethyl acetic
anhvdride alcohol acetate acid
Amides
The general molecular formula for an
amide, often written RCONH2, is
RC=0
32.11 Amides
NH2
The replacement of a hydrogen atom in an ammonia molecule by an
CH 3 C=0 HC=0 alkyl group gives an amine (RNH 2 ). Replacement of a hydrogen atom
I in an ammonia or an amine molecule by an acyl group gives an
NH2 N(CH 3 ) 2
acetamide N ,N-dimethyl- amide, RCONH2. The common name for an amide is derived by re
{ethanamide) formamide placing the yl of the acyl name by amide. Thus, acetamide is the name
m.p. 82°C h.p. 153°C
for CH3CONH2. Since the acyl group is named by replacing the ic of
the carboxylic acid name by yl, one can derive the amide name from
CONH 2 CH,C=0 the corresponding acid name by dropping the ic (or oic of the IUPAC
NH name) and adding amide (Table 32.21).
If one or more of the hydrogen atoms on the amide nitrogen atom
are replaced by hydrocarbon groups, the structure is named as an
benzamide TV-substituted amide.
m.p. 128°C N-phenyla cetam ide Amide molecules form intermolecular hydrogen bonds with
(acetanilide)
m.p. 114°C themselves, or with other appropriate molecules such as water.
Practically all of the amides are solids. A^A^Dimethylformamide
(DMF), one of the few liquid amides, is an excellent solvent. Urea,
H 2 NCONH 2 , is the diamide of carbonic acid.
An amide of considerable current interest is the hallucinogenic
drug LSD (lysergic acid diethylamide) (Table 32.22), also known as
"acid" and by several other names. Lysergic acid, from which the
diethylamide is derived, is present in ergot, a fungus found on rye.
TABLE 32.22
p-Aminobenzenesulfonamide (sulfanilamide) (Table 32.22) and
Some additional amides
CON(C 2 H 5 ) 2 NH2 NH CH 3
RCNH-
CH 3
CH, O 0 ^-N- COOH
CONHo
H
sulfadiazine OH O HO | O
lysergic acid
diethylamide H
(LSD) Aureomvcin
1030
some of its ^ - s u b s t i t u t e d derivatives are known as the sulfa drugs, an
important group of drugs that combat the growth of bacteria.
The penicillins, which are amides, were the first of the antibiotics
to be discovered; they have to a great extent displaced sulfa drugs in
the treatment of infectious diseases. Many penicillins are known;
they differ only in the R group of the structure shown. Aureomycin is
a representative of a group of tetracycline antibiotics.
Compounds with two acyl groups bonded to the nitrogen atom of
an ammonia molecule are known as imides. Barbiturates are cyclic
imides that are depressants. They are the " d o w n e r s " that have a
sedative or soporific action, typified by Nembutal, Luminal, and
Seconal.
O
II H
R C—N
II H
o
Nembutal (R, C2H5; R', CH3CH2CH2CHCH3)
Luminal (phenobarbital) (R, C2H5; R', CQH5)
Seconal (R, CH,=CHCH2; R', CH:fH,CH,CHCH:i)
—CH2CH-/CH2CH-VCH2CH—
1 ( 1 ) 1
C6H5\ C6H5/ C6H5
1031
polymeric biochemical molecules are often made up of repeating
units that are similar but different. The subtle and highly specific
functions of many biochemical molecules are made possible by the
combination of different small molecules in an exact sequence.
O
H
(H) NCH2C—iOHJ + (H) NCHC OH
CH 3
glycine alanine
dipeptides
H H OH
C = 0 + ROH > C
R' R' OR
a hemiacetal
Prolate spheroid,
For D-glucose, writing the structures as though the ring is perpendic 6.8 X 3.4 nm
ular to the plane of the paper, the ring forms as follows
Collagen
XH.OH ,CH,OH triple helix,
~ 29 nm long
HsC () H
I/H \l
H
' i\? M'
H O C i ^ H H i C OH
2
H OH Ί I Cube,
H OH 3.45 nm
ß-D-glucose D-glucose
aldehyde form a-D-glucose a helix,
45 nm long
1.1 nm dia.
The a and ß indicate the two different configurations possible at ~ 80 turns
carbon atom 1. Brick,
1.8 X 3 . 6 X 6.3 nm
TABLE 32.25
Some monosaccharides ΓΓΓΤΤΤΤηΤΤΤ
1033
TABLE 32.26
Some functions of carbohydrates Derivatives of monosaccharides Metabolism intermediates
Plant pigments
Blood anticoagulant (heparin)
Vitamin C
Structural polysaccharides Plant cell walls (cellulose)
Animal cell coating
Skin (keratin)
Storage polysaccharides Release monosaccharides (starch in plants; glyco-
gen in animals)
Release energy when oxidized
H, -O H
,OH H CH 2 OH
HO
H OH
°^J\„„
D- glucose O-fructose
a glycoside linkage
CHoOH
CHoOH
OH H
32.14 Lipids
1034
carboxylic acids—in soaps (Section 13.12). The naturally occurring
esters of fatty acids form one class of lipids. The most common of
these are esters of glycerol (1,2,3-propanetriol) called glycerides
O
CH2OCR
O
II
CHOCR
O
. II
CH2OCR
a glyceride
Animal fats, such as lard, tallow, and butter, and vegetable oils, such
as corn oil, soybean oil, linseed oil, olive oil, and peanut oil are all
glycerides. In simple glycerides the R groups are all alike, and in
mixed glycerides the R groups are not all alike. There are monoglyc-
erides, in which only one OH group of glycerol has been esterified,
and diglycerides and triglycerides. Most fats and oils are mixtures of
mixed glycerides. In fats the hydrocarbon chains of the fatty acids
are largely saturated, and in oils they are predominantly unsatur-
ated. The fatty acids found in glycerides nearly always have an even
number of carbon atoms.
The major function of glycerides is to store energy. In animals
fats consumed in the diet are partially broken down to mono- and
diglycerides in the intestines and then pass through the intestine
walls. Triglycerides are reformed and carried to the liver and other
tissues. At these sites the triglycerides are either chemically trans
formed to release energy or deposited as fat droplets for future con
version to energy. Sugars can be converted to fats in the liver and
then are either used to produce energy or are stored in the body.
Several other types of compounds are included in the lipid class.
Phospholipids are generally derived from glycerol by esterification of
two OH groups by fatty acids and of one OH group by a phosphoric
acid derivative.
O
II
CH2OCR
O
II
CHOCR
I
CH 2 OP0 3 R'
a phospholipid
Phospholipids have important functions in cell m e m b r a n e s . Waxes,
which form protective coatings on, for example, leaves or feathers,
are lipids that are esters of long-chain fatty acids and long-chain
monohydroxy alcohols. Steroids all contain a four-ring hydrocarbon
unit. Cholesterol, which has been implicated in " h a r d e n i n g " of the
arteries and heart disease, is one example of a steroid. ORGANIC CHEMISTRY [32.14]
1035
cyclopentanoperhydrophenanthrene,
basis for all steroids HO ^ — H3C -CH3
cholesterol, a steroid
N
N
^N
> O N"
H
purine pyrimidine
FIGURE 32.2
—OCH2 / ° \ t>ase
Examples of a nucleoside, a nucleotide, and the linkage of nucleo \ l CH
tides in a nucleic acid. In each structure, the monosaccharide is Λ H H7
shown in color. H \l 1/
c—c
H
NH2 the base NH2 O
the base
O — P — O — CH 2 A base
<■ the phosphate
I I
o- CH
O H \| 1/
II c—c
the sugar HO—P—O—CH the sugar
H
OH O
H \l |/ H . II
c—c o—p—
I
OH OH OH H o-
a nucleoside a nucleotide two nucleotide units
(adenosine) {deoxycy tidy lie acid) in a DNA molecule
1036
has been transformed to a CH 2 group; and (3) one or more phosphate
groups.
A nucleic acid consists of several thousand nucleotides joined
together by ester linkages between the third carbon atom of the sugar
of one nucleotide and the phosphate group of another. Nucleosides,
which do not play a biochemical role as free molecules but are inter
mediates in metabolism, are nucleotides without the phosphate unit.
A nucleoside, nucleotide, and two units of a nucleic acid are shown in
Figure 32.2.
The nucleotide adenosine triphosphate, commonly referred to as
ATP, is the primary source of energy within the cell. The transfer of
one phosphate group from ATP to another molecule releases energy
for use as heat or to support some chemical process that requires
energy.
o- o- o-
—O—P—O—P—O—P—O—CHo/O base
o o o
+ HP0 4 2 - + H+
OH OH
ADP
1037
Base pairs
phate-sugar
FIGURE 32.3
The double helix of DNA. (a) Flattened view of the structure
of DNA, (b) the intertwined helices.
of bases, one from each of the adjacent nucleotides. The bases are at
tracted to each other by hydrogen bonds. A flattened view of the
structure is given in Figure 32.3, together with a simple sketch of the
double helix connected by the base pairs.
THOUGHTS ON
CHEMISTRY
1038
my eyes! Whenever, hitherto, these diminutive beings had appeared to
me, they had always been in motion; but up to that time I had never
been able to discern the nature of their motion. Now, however, I saw
how, frequently, two smaller atoms united to form a pair; how a
larger one embraced the two smaller ones; how still larger ones kept
hold of three or even four of the smaller; whilst the whole kept
whirling in a giddy dance. I saw how the larger ones formed a chain,
dragging the smaller ones after them but only at the ends of the chain.
I saw what our past master, Kopp, my highly honored teacher and
friend, has depicted with such charm in his "Molekular-welt"; but I
saw it long before him. The cry of the conductor: "Clapham Road,"
awakened me from my dreaming; but I spent a part of the night in
putting on paper at least sketches of these dream forms. This was the
origin of the "Structural Theory."
Something similar happened with the benzene theory. During my
stay in Ghent I resided in elegant bachelor quarters in the main thor
oughfare. My study, however, faced a narrow side-alley and no day
light penetrated it. For the chemist who spends his day in the labora
tory this mattered little. I was sitting writing at my textbook but the
work did not progress; my thoughts were elsewhere. I turned my chair
to the fire and dozed. Again the atoms were gamboling before my eyes.
This time the smaller groups kept modestly in the background. My
mental eye, rendered more acute by repeated visions of the kind, could
now distinguish larger structures of manifold conformation: long
rows, sometimes more closely fitted together all twining and twisting
in snake-like motion. But look! What was that? One of the snakes had
seized hold of its own tail, and the form whirled mockingly before my
eyes. As if by a flash of lightning I awoke; and this time also I
spent the rest of the night in working out the consequences of the
hypothesis.
Let us learn to dream, gentlemen, then perhaps we shall find the
truth.
KEKULE'S DREAM, by August Kekule, 1890 {Berichte der Deutschen Chemis
chen Gesellschaft. Translated by P. Theodor Benfey; from Journal of Chemi
cal Education, Vol. 35, p. 21, 1958)
1039
Exercises hyde, (i) cyclobutanone, (j) 2,2-dimethylpropanoic acid, (k)
a m m o n i u m benzoate, (1) acetic propionic anhydride, and
(m) isopropyl formate.
32.1 A student was given three bottles labeled A, B, and C.
One of these contained acetic acid, one contained acetalde-
hyde, and one contained ethyl alcohol, (a) Write a struc 32.7 Give a name (common or IUPAC) for each of the fol
tural formula for each of these compounds and (b) n a m e lowing compounds:
them using the IUPAC nomenclature. The student ob (a) CH 3 CH 2 CH 2 CH 2 OH (i) CH 3 CH 2 CHO
served that substance A reacted with substance B to form
an ester under certain conditions and that substance B (b) CH 3 —CH—CH 3 O
formed an acidic solution when dissolved in water, (c)
NH 2 (j) <^ V-CCH 2 CH 3
Identify which compound is in each bottle and (d) write
balanced chemical equations for the reaction involving
the formation of the ester and for the ionization of the
acid. To confirm the identification, the student treated the
(c) Br /Λ Br (k) CH 3 —CH—COOH
1040
32.10 Complete the following equations: 32.11 Show by equations how you might be able to carry
out the following conversions. You may use any other
(a) CH3CH2I + NaOH -^-* organic or inorganic compounds you need. More than one
step may be necessary.
OH Br
Br
I
H20
(d) ^ ^ N H 3 + C 1 - + NaOH (c) CH 3 CH 2 CH 2 Br to CH 3 CHCH 2
Br
NH 2 (d) H03S /Λ NH 2 to
HO
NaN02
cold H03S ^\-H=HJ
/ \ Cr2072
(e) CH 3 CH 2 OH
(f) < ^ j > - O H ~ (f) CH 3 CH 2 OH
to
to (CH 3 CH 2 ) 4 N + Br-
(g) 2CH 3 COOH + Ba(OH) 2 32.12 Many of the classes of compounds discussed in this
chapter can be "derived" from the water molecule
Mn0 4 H!—O—H 2
(h) CH 3 CH 2 CHO —£-
by changing one or both of the hydrogens for various
organic groups. Name the class of compound formed when
(a) Hi is replaced by an alkyl group, (b) Η χ is replaced by
(0 l· Jl + (CH3CO)20 an aromatic group, (c) Hi and H 2 are replaced by alkyl
groups, (d) Hi is replaced by R — C = 0 group, (e) Hx is
replaced by a R — C = 0 group and H 2 is replaced by an
alkyl group, and (f) H! and H 2 are replaced by R — C = 0
O groups.
CH,CH,OH II
32.13 What is the approximate p H of a 0.10M solution
(j) <P of sodium benzoate? Ka = 6.6 x 10" 5 for benzoic acid,
C 6 H 5 COOH. Would this solution be more or less acidic
II than a 0.10M solution of sodium acetate? Ka = 1.754 x
o
K r 5 for acetic acid, CH 3 COOH.
1041
32.15 In aqueous solution, acetic acid exists mainly in tion and the room was filled with flying pieces of glass as a
the molecular form (Ka = 1.745 x 10 -5 ). (a) Calculate the result of the explosion, (c) Write the equation for the explo
freezing point depression for a 0.10 molal aqueous solu sion (note that no additional reactants such as 0 2 from the
tion of acetic acid neglecting any ionization of the acid.K{p air are required). Calculate the number of moles of gase
= 1.86 for water. In nonpolar solvents such as benzene, ous products formed (d) for each mole of nitroglycerin that
acetic acid exists mainly as dimers reacted and (e) for the sample that exploded.
An explosion takes place so fast because the energy re
/H—Ö—C—CH3 leased cannot be dissipated to the surroundings and there
fore the products are formed at very high temperatures
:d: - || and rapidly expand. We can find the approximate temper
II .. : p : ature by dividing the heat of reaction, - 3 4 2 kcal/mole of
CH3—C—O—W nitroglycerin, by the heat capacity of the product gases
as a result of hydrogen bonding, (b) Calculate the freezing and adding 25°C to this value, (f) Calculate the heat capac
point depression for a 0.10 molal solution of acetic acid in ity of the product gases by adding together the number of
benzene. K{p = 4.90 for benzene. moles of each gas formed multiplied by the heat capacity
of that gas using the following data for heat capacity: 8.87
32.16" A "chemist" decided to make some nitroglycerin cal/mole °C for C0 2 , 6.961 cal/mole °C for N 2 , 8.025
using a home chemistry set. Without taking any precau cal/mole °C for H 2 0 , and 7.016 cal/mole °C for 0 2 . (g) Cal
tions, he heated a mixture of 25 g of glycerol with 25 ml of culate the approximate temperature of the product gases.
12M H N 0 3 in a 100 ml flask, (a) Write the equation for the (h) Assuming the ideal gas law to be valid, what pressure
reaction and (b) calculate the theoretical yield of nitro did the product gases exert on the inside of the flask before
glycerin. However, the nitroglycerin underwent detona the explosion?
1042