study of the tissues of the body and how these the method most commonly used by both tissues are arranged to constitute organs students and pathologists, uses ordinary light and cells and extracellular matrix (ECM) the colors are imparted by tissue staining CELLS and ECM CELLS - produce the ECM locally and are in turn strongly FLUORESCENCE MICROSCOPY influenced by matrix molecules uses ultraviolet light, under which only fluorescent ECM - supports the cells and contains the fluid molecules are visible, allowing localization of transporting nutrients to the cells, and carrying away their fluores- cent probes which can be much more wastes and secretory products specific than routine stains
PREPARATION OF TISSUES FOR STUDY PHASE-CONTRAST MICROSCOPY
basic steps used in tissue preparation for light uses the differences in refractive index of various microscopy natural cell and tissue components to produce an 1. FIXATION image without staining, allowing observation of Small pieces of tissue are placed in solutions of living cells chemicals that cross-link proteins and inactivate degradative enzymes, which preserve cell and CONFOCAL MICROSCOPY tissue structure. involves scanning the specimen at succes- sive 2. DEHYDRATION focal planes with a focused light beam, often from The tissue is transferred through a series of a laser, and produces a 3D reconstruction from the increasingly concentrated alcohol solutions, images ending in 100%, which removes all water. 3. CLEARING POLARIZING MICROSCOPY Alcohol is removed in organic solvents in which allows the recognition of stained or unstained both alcohol and paraffin are miscible. structures of highly organized subunits 4. INFILTRATION BIREFRINGENCE - ability to rotate the direction of The tissue is then placed in melted paraffin until it vibration of polarized light becomes completely infiltrated with this substance. AUTORADIOGRAPHY 5. EMBEDDING localizes cell components synthesized using The paraffin-infiltrated tissue is placed in a small radioactive precursors by detecting silver grains mold with melted paraffin and allowed to harden. produced by weakly emitted radiation in a 6. TRIMMING photographic emulsion coating the tissue section The resulting paraffin block is trimmed to expose or cells the tissue for sectioning (slicing) on a microtome. permits unique studies of processes such as tissue growth (using radioactive DNA precursors) or STAINING cellular pathways of macromolecular synthesis BASOPHILIC - cell components such as nucleic acids with a net negative charge (anionic) have an CELL & TISSUE CULTURE affinity for basic dyes Cells can be grown in vitro from newly explanted ACIDOPHILIC - cationic components, such as tissues (primary cultures) or as long-established proteins with many ionized amino groups, stain cell lines and can be examined in the living state by more readily with acidic dyes phase-contrast light microscopy. BASIC DYES - toluidine blue, alcian blue, and methylene blue ENZYME HISTOCHEMISTRY o DNA, RNA, and glycosaminoglycans use specific enzymatic activities in lightly fixed or ACID DYES - eosin, orange G, and acid fuchsin unfixed tissue sections to produce visible products o mitochondria, secretory granules, and in the specific enzyme locations collagen usually uses frozen tissue sectioned with a cryostat H&E (HEMATOXYLIN AND EOSIN) - most phosphatases, dehydrogenases, and peroxidases commonly used staining method often conjugated to antibodies used in PAS (PERIODIC ACID-SCHIFF) - utilizes the hexose immunohistochemistry rings of polysaccharides and other carbohydrate- rich tissue structures and stains such macromolecules distinctly purple or magenta SUDAN BLACK - lipid-soluble dye which can be useful in diagnosis of metabolic diseases that involve intracellular accumulations of cholesterol, phospholipids, or glycolipids. MAZON, D.M.P. | BSMT2B VISUALIZING SPECIFIC MOLECULES IMMUNOHISTOCHEMISTRY - based on specific reactions between an antigen and antibodies labeled with visible markers, often fluorescent compounds or peroxidase for light microscopy and gold particles for TEM DIRECT IMMUNOHISTOCHEMISTRY - cell or tissue antigen of interest is detected by directly binding a labeled primary antibody specific for that antigen INDIRECT IMMUNOHISTOCHEMISTRY - uses an unlabeled primary antibody that is detected bound to its antigen with labeled secondary antibodies o more commonly used ISH (IN SITU HYBRIDIZATION) - technique using labeled complementary DNA (cDNA) to microscopically detect Specific gene sequences or mRNAs of cells
INTERPRETATION OF STRUCTURES IN TISSUE SECTIONS
Many steps in tissue processing, slide preparation, and staining can introduce minor artifacts such as spaces and precipitates that are not normally present in the living tissue and must be recognized. Sections of cells or tissues are essentially 2D planes through 3D structures, and understanding this fact is important for their correct interpretation and study.