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Farah Al Qaraghuli Department of Pharma- Liam Evans Hypha Discovery Ltd., Oxford-
ceutical Sciences, School of Pharmacy and shire, United Kingdom
Pharmaceutical Sciences, The State University Raymond Evers Department of Pharmacokinet-
of New York at Buffalo, Buffalo, NY, United ics, Pharmacodynamics and Drug Metabolism,
States Merck & Co Inc., Kenilworth, NJ, United States
Ravindra Varma Alluri Clinical Pharmacology Robert S. Foti Pharmacokinetics, Pharmaco-
and Safety Sciences, R&D BioPharmaceuticals, dynamics and Drug Metabolism, Merck
AstraZeneca, Cambridge, United Kingdom Research Laboratories, Boston, MA, United
Sophie M.A. Argon Department of Pharma- States
ceutics, School of Pharmacy, University of Adrian J. Fretland DMPK, Research and Early
Washington, Seattle, WA, United States Development, Oncology R&D, AstraZeneca,
Piyush Bajaj Drug Safety Research and Evalua- Waltham, MA, United States
tion, Takeda Pharmaceutical International Co., Christopher Gemski Translational Research
Cambridge, MA, United States Bioassay and Immunogenicity Group, Drug
Tashinga E. Bapiro DMPK, Research and Early Metabolism and Pharmacokinetic Department,
Development, Oncology R&D, AstraZeneca, Takeda Pharmaceuticals International Co.,
Cambridge, United Kingdom Cambridge, MA, United States
Abdul Basit Department of Pharmaceutics, Anima Ghosal Independent Consultant,
University of Washington, Seattle; Depart- Piscataway, NJ, United States
ment of Pharmaceutical Sciences, Washington Jia Hao Drug Metabolism, Gilead Sciences
State University, Spokane, WA, United States Inc, Foster City, CA, United States
Andreas Brink Roche Pharma Research Satyajeet Haridas Translational Research Bio-
and Early Development, Roche Innovation assay and Immunogenicity Group, Drug
Center Basel, F. Hoffmann-La Roche Ltd, Basel, Metabolism and Pharmacokinetic Department,
Switzerland Takeda Pharmaceuticals International Co.,
Tingting Cai Laboratory Testing Division, Cambridge, MA, United States
WuXi AppTec, Nanjing, China Simon Hauri Roche Pharma Research and Early
Jose Castro-Perez Agios Pharmaceuticals, Inc., Development, Roche Innovation Center Basel,
Cambridge, MA, United States F. Hoffmann-La Roche Ltd, Basel, Switzerland
Jae H. Chang Preclinical Development, ORIC Nina Isoherranen Department of Pharma-
Pharmaceuticals, South San Francisco, CA, ceutics, University of Washington, Seattle,
United States WA, United States
Eugene Chia-Te Chen Department of Drug Wenying Jian DMPK, Janssen R&D, Spring
Metabolism and Pharmacokinetics, Genentech, House, PA, United States
South San Francisco, CA, United States Kevin Johnson Drug Metabolism and Pharma-
Marie Croft Pharmaron ABS, Germantown, cokinetics, Genentech, South San Francisco,
MD, United States CA, United States
xi
xii Contributors
Barry Jones DMPK, Research and Early Devel- Kaushik Mitra Department of Drug Metabo-
opment, Oncology R&D, AstraZeneca, Cam- lism and Pharmacokinetics, Janssen Research
bridge, United Kingdom and Development, Springhouse, PA, United
Robert S. Jones Drug Metabolism and Pharma- States
cokinetics, Genentech, South San Francisco, Diana Montgomery Department of Pharma-
CA, United States cokinetics, Pharmacodynamics and Drug
Jan Felix Joseph Freie Universitaet Berlin, Insti- Metabolism, Merck & Co Inc., Kenilworth, NJ,
tute of Pharmacy—Pharmaceutical Analysis; United States
Freie Universitaet Berlin, Department of Alexandra L. Orton DMPK, Research and Early
Biology, Chemistry, Pharmacy, CoreFacility Development, Oncology R&D, AstraZeneca,
BioSupraMol, Berlin, Germany Cambridge, United Kingdom
S. Cyrus Khojasteh Drug Metabolism and Katie H. Owens Department of Pharmaceutics,
Pharmacokinetics, Genentech, South San School of Pharmacy, University of Washing-
Francisco, CA, United States ton, Seattle, WA, United States
Yurong Lai Drug Metabolism, Gilead Sciences Axel P€ ahler Roche Pharma Research and
Inc, Foster City, CA, United States Early Development, Roche Innovation Center
Hoa Le Drug Metabolism, Gilead Sciences, Basel, F. Hoffmann-La Roche Ltd, Basel,
Foster City, CA, United States Switzerland
Xiaomin Liang Drug Metabolism, Gilead Sci- Maria Kristina Parr Freie Universitaet Berlin,
ences Inc, Foster City, CA, United States Institute of Pharmacy—Pharmaceutical Analy-
sis, Berlin, Germany
Liming Liu Product Development, Curon
Biopharmaceutical Ltd, Shanghai, People’s Shefali Patel DMPK, Janssen R&D, Spring
Republic of China House, PA, United States
Filipe Lopes Roche Pharma Research and Ichiko D. Petrie Department of Pharma-
Early Development, Roche Innovation Center ceutics, School of Pharmacy, University of
Basel, F. Hoffmann-La Roche Ltd, Basel, Washington, Seattle, WA, United States
Switzerland Richard Phipps Hypha Discovery Ltd., Oxford-
Justin Q. Ly Drug Metabolism and Pharmacok- shire, United Kingdom
inetics, Genentech, South San Francisco, CA, Chandra Prakash Agios Pharmaceuticals, Inc.,
United States Cambridge, MA, United States
Shuguang Ma Drug Metabolism and Pharma- Bhagwat Prasad Department of Pharmaceutics,
cokinetics, Genentech Inc., South San Francisco, University of Washington, Seattle; Department
CA, United States of Pharmaceutical Sciences, Washington State
Roshini Markandu DMPK, Research and Early University, Spokane, WA, United States
Development, Oncology R&D, AstraZeneca, Isabelle Ragueneau-Majlessi Department of
Cambridge, United Kingdom Pharmaceutics, School of Pharmacy, Univer-
Rosalinde Masereeuw Division of Pharmacol- sity of Washington, Seattle, WA, United States
ogy, Utrecht Institute for Pharmaceutical Venkatesh Pilla Reddy DMPK, Research and
Sciences, Utrecht, The Netherlands Early Development, Oncology R&D; Depart-
J. Eric McDuffie Investigative & Mechanistic ments of Modeling and Simulation, Early
Toxicology, Janssen Research & Development, Oncology Drug Metabolism and Pharma-
San Diego, CA, United States cokinetics, R&D Oncology, AstraZeneca,
Cambridge, United Kingdom
Contributors xiii
Ellen Riddle Drug Metabolism, Gilead Sciences Caisheng Wu School of Pharmaceutical Sci-
Inc, Foster City, CA, United States ences, Xiamen University, Xiamen, China
Qian Ruan Pharmaceutical Candidate Charac- Graeme C. Young GlaxoSmithKline Research
terization, Bristol-Myers Squibb, Princeton, and Development Ltd., David Jack Centre,
NJ, United States Ware, United Kingdom
Simone Schadt Roche Pharma Research and Jingjing Yu Department of Pharmaceutics,
Early Development, Roche Innovation Center School of Pharmacy, University of Washing-
Basel, F. Hoffmann-La Roche Ltd, Basel, ton, Seattle, WA, United States
Switzerland Lushan Yu Institute of Drug Metabolism and
Dhaval K. Shah Department of Pharmaceutical Pharmaceutical Analysis, Zhejiang University,
Sciences, School of Pharmacy and Pharma- Hangzhou, People’s Republic of China
ceutical Sciences, The State University of New Su Zeng Institute of Drug Metabolism and
York at Buffalo, Buffalo, NY, United States Pharmaceutical Analysis, Zhejiang University,
Julia Shanu-Wilson Hypha Discovery Ltd., Hangzhou, People’s Republic of China
Oxfordshire, United Kingdom Haeyoung Zhang Department of Pharma-
Kelly MacLennan Staiger Drug Metabolism, ceutics, University of Washington, Seattle,
Gilead Sciences Inc, Foster City, CA, United States WA, United States
Jonathan Steele Hypha Discovery Ltd., Oxford- Wanying Zhang Department of Pharma-
shire, United Kingdom ceutical Sciences, School of Pharmacy and
Manthena V.S. Varma Medicine Design, Pharmaceutical Sciences, The State Univer-
Worldwide R&D, Pfizer Inc., Groton, CT, sity of New York at Buffalo, Buffalo, NY,
United States United States
Matthew P. Wagoner Drug Safety Research Andy Z.X. Zhu Department of Drug Metabo-
and Evaluation, Takeda Pharmaceutical Inter- lism and Pharmacokinetics, Takeda Pharma-
national Co., Cambridge, MA, United States ceuticals International Co., Cambridge, MA,
United States
Naidong Weng DMPK, Janssen R&D, Spring
House, PA, United States Mingshe Zhu MassDefect Technologies, Prince-
ton, NJ, United States
Stephen Wrigley Hypha Discovery Ltd.,
Oxfordshire, United Kingdom
Foreword
It is my great pleasure to write the fore- identified many breakthroughs that have
word for this excellent book. The study of ultimately contributed to bringing drugs to
drug metabolism and disposition is a mature patients with an urgent need for better trea-
science, but still essential in drug discovery tments. It is very gratifying that the number
and development. Indeed, a quick search of of drugs approved by the FDA is increasing
PubMed, using “drug metabolism” as the steadily with 38 NMEs (new molecular en-
search term, came up with more than tity) and 10 BLAs (biological license applica-
18,000 hits. One of the earlier articles is by tion) approved by the US Food and Drug
Bernard Brodie, considered to be the founder Administration (FDA) in 2019 [2]. The level
of modern pharmacology and a major con- of innovation is best illustrated by about half
tributor to the study of drug metabolism. of the approved drugs in 2019 having a
His article—published in the Journal of Phar- breakthrough designation. Drug metabolism
macy and Pharmacology in 1956—is titled and pharmacokinetics (DMPK) scientists are
“Pathways of Drug Metabolism” and it is based fully embedded in project teams in drug dis-
on a lecture at the University of London [1]. covery and work hand in hand with medici-
It describes his work over the decade and nal chemists on the identification of drugs
some of it is based on collaborations with with superior properties. These scientists
other pioneers in the field such as Julius have become very good at dialing out the
Axelrod. One sentence still resonates very “known unknowns” such as metabolism by cy-
much and it actually covers much of the ma- tochrome P450 enzymes. However, this has
terial described in this book: actually resulted in having to deal with much
more complex drug disposition pathways in-
Finally, it is thought that a detailed knowl- volving less well-studied drug metabolizing
edge of enzymes involved in drug “detoxifica- enzymes and also more and more drug
tion” might help the medicinal chemist to transporters. This trend is also fueled by a
develop compounds of either high or low stabil- shift toward more and more drugs having
ity in the body, whichever would be more de- beyond the “rule of five” molecular proper-
sirable in gaining a desired therapeutic result. ties [3]. Indeed, the average molecular
weight of drugs approved by the FDA in
Drug metabolism sciences have advanced 2016 and 2017 was more than 500 Da and
tremendously since the publication of this ar- the median clogP of drugs approved from
ticle and this progress was to a large extent 2008 to 2017 is now 3.3, in part driven by try-
enabled by advances in the availability of ing, for example, to disrupt protein-protein
biochemical reagents and bioanalytical tech- interactions. An additional consequence of
niques, in particular mass spectrometry. this shift in properties is that in vitro to
Both academic and industrial scientists have in vivo extrapolation of ADME properties
xv
xvi Foreword
to predict the human pharmacokinetics has latter topic is covered in Chapter 5. The last
become more complex and the same can be chapter in the first section (Chapter 6)
said of predicting drug-drug interaction— focuses on accelerator mass spectrometry,
many of which now involve drug trans- a powerful tool to study ADME and the
porters. If anything, the involvement of absolute bioavailability in humans.
DMPK scientists is now more important than The second section addresses “Drug me-
ever because of the pursuit of novel molecular tabolizing enzymes, transporters and drug drug
modalities in academia and in the pharma- interactions.” Cytochrome P450-mediated
ceutical industry; a few that come to mind and non-cytochrome P450-mediated metab-
are antibody-drug conjugates, protein de- olism is discussed in Chapters 7 and 8.
graders, and macrocyclic peptides. DMPK In vitro to in vivo prediction of drug-drug in-
scientists can help make drugs out of these teraction is described in Chapter 9 while
hard-to-drug modalities. Finally, the integra- Chapter 10 specifically focuses on the role
tion of this diverse array of in vitro and in vivo of transporters in drug disposition and
data is enabled by computational modeling drug-drug interaction, and Chapter 11 on
and simulation. Physiologically based phar- the clinical relevance of these drug-drug
macokinetic (PBPK) modeling is a very pow- interactions. Making predictions using PBPK
erful tool to predict human pharmacokinetics modeling relies on accurate knowledge of
and study drug-drug interaction as well as physiologic constants and, most recently,
the pharmacokinetics in special populations mass spectrometry has been used to deter-
and infants. Pharmacokinetic/pharmaco- mine the abundance of drug metabolizing
dynamic modeling and its extension, quanti- enzymes and transporters in various tissues.
tative systems pharmacology, can help This is addressed in Chapter 12. Finally,
translate preclinical findings to the clinic. Chapter 13 focuses on disease-drug interac-
This book is comprised of many excellent tions mediated by therapeutic proteins such
chapters written by experts in the field that as interleukins.
address some of the challenges highlighted The third section focuses on “Strategy re-
in the previous paragraph. The first section lated to drug metabolism and safety.” Metabo-
focuses on “Techniques for identifying and lites in safety testing continues to be a
quantifying drugs and metabolites.” Chapters highly relevant area of research in drug dis-
1–3 introduce the readers to the latest ad- covery and development and it is addressed
vances in bioanalysis, in particular mass in Chapter 14. A close look at the (patent) lit-
spectrometry for the analysis of drugs, their erature indicates that finding drugs that bal-
metabolites, and endogenous biomarkers. In ance potency and metabolic stability can still
contrast to 20 years ago, high-resolution be problematic, and therefore many com-
mass spectrometry has now become routine panies incorporate deuterium to enhance
and it has had a great impact on the study metabolite stability and lower the dose—
of biotransformation. Of course, mass spec- see Chapter 15 for details. The focus on novel
trometry is frequently not sufficient to iden- chemical space and more molecular diversity
tify the definitive structure of a metabolite, has introduced more chirality in molecules
and hence Chapter 4 focuses on strategies and the impact of that on pharmacology, tox-
for generating metabolites and characteriza- icology, and drug metabolism is described in
tion via NMR. Supercritical fluid chromatog- Chapter 16. Drug-induced liver injury and
raphy has become easier to interface and it new predictive models for renal injury are de-
can greatly facilitate chiral separation; the scribed in Chapters 17 and 18, respectively.
Foreword xvii
Finally, Chapter 19 focuses on immuno- excellent set of chapters that describe the
genicity as a key component of antibody state of the art in ADME sciences as it
development. relates to drug discovery and development.
The fourth and last section is dedicated to The efforts by all authors, and in particular
“Translational sciences.” The use of geneti- the editors Shuguang Ma and Swapan
cally modified rodents is explored further Chowdhury, are greatly appreciated. This
in Chapter 20, while Chapter 21 speaks to book will be used as a resource for many
the use of CRISPR to advance in vitro ADME years to come.
models. In vitro to in vivo extrapolation of Cornelis E.C.A. Hop
hepatic and renal clearance is discussed in
Chapter 22. The breadth of our science is
nicely illustrated by Chapter 23 which de- References
scribes the role of mathematical modeling [1] B.B. Brodie, Pathways of drug metabolism, J. Pharm.
in translational sciences. Last, but by no Pharmacol. 8 (1) (1956) 1–17.
means least, Chapter 24 elegantly defines [2] A. Mullard, 2019 FDA drug approvals, Nat. Rev.
Drug Discov. 19 (2) (2020) 79–84.
ways to predict the human efficacious dose
[3] M.D. Shultz, Two decades under the influence of
using PK/PD modeling. the rule of five and the changing properties of ap-
As is the case with many compilations, a proved oral drugs, J. Med. Chem. 62 (4) (2019)
lot of effort has gone into assembling an 1701–1714.
Preface
Some 15 years ago, one of us (SKC) com- and excretion (ADME), the potential for he-
piled the first edition of this book that patic and renal toxicity, immunogenicity of
covered the most up-to-date information biotherapeutics, and translational tools for
previously available on the strategies, predicting human dosage, safety, and effi-
methods, applications, and implications of cacy of small molecules and biologics.
scientific data on the role of enzymes and This book is organized into four sections:
transporters in the disposition of pharma- (1) techniques for identifying and quantify-
ceuticals. The book was a great success and ing drugs and metabolites, (2) drug metabo-
was widely used as a valuable resource by lism enzymes, transporters, and drug-drug
scientists in both industry and academia. interactions, (3) strategies related to drug
Since then, a lot has changed in the field of metabolism and safety, and (4) translatio-
drug metabolism, including how recent nal sciences. The book contains 24 chapters
scientific advances are being utilized to dis- covering the most recent, novel scientific
cover and develop safer medicines. There- breakthroughs and how they are utilized to
fore, it has become apparent that a new develop medicines in the modern era. It is
edition of the book is required to fully cap- our sincere hope that this material will serve
ture these profound changes, which involves as an important tool and desk reference for
the implementation of newer technologies in pharmacologists, toxicologists, clinical scien-
the discovery and development of medicines tists, and students interested in the fields
to treat a wide range of maladies. With much of pharmacology, biochemistry, and drug
enthusiasm from the publisher, we collabo- metabolism.
rated to assemble a comprehensive treatise Finally, we wish to acknowledge the con-
that would capture how the latest scientific tributions of the many scholars who partici-
findings are having a fundamental impact pated in and contributed to this book from
on the utilization of these novel advances conception and passion into print. We also
in drug research. This second edition is want to extend our gratitude to the contribu-
completely updated and provides an over- tions of the editorial staff and production
view of the last decade’s numerous improve- manager at Elsevier, and last but not least,
ments in analytical technologies for the the families of the editors for their encour-
detection and quantification of drugs, metab- agement, love, and support.
olites, and biomarkers. This new edition goes
beyond conventional LC-MS and features
all-new chapters, including: how to evaluate Shuguang Ma
drug absorption, distribution, metabolism, Swapan K. Chowdhury
xix
C H A P T E R
1
Bioanalysis of small and large
molecule drugs, metabolites, and
biomarkers by LC-MS
Naidong Weng, Shefali Patel, Wenying Jian
DMPK, Janssen R&D, Spring House, PA, United States
1 Introduction
In this book chapter, we try to provide a brief overview of contemporary bioanalysis using
the LC-MS platform. It is an impossible task to provide a detailed and comprehensive review
of LC-MS bioanalysis in a book chapter. The case studies and literature are no doubt incom-
plete and biased toward our own experiences and publications. Interested readers are
referred to the excellent bioanalysis handbook by Li et al. for a more comprehensive overview
of this discipline [1]. Nevertheless, we hope the readers can appreciate the complexity and
dynamics of modern LC-MS-based bioanalysis for small and large molecule drugs, metabo-
lites, and biomarkers.
Bioanalytical support is required for important decision-making for all types of studies,
from discovery (non-GLP), to development (GLP), and to clinical (GCP) studies. Yet there
are many unique and complicated attributes of cost, quality, and timely delivery at each of
the abovementioned stages (or substage within each stage). For bioanalysis, the quality
and integrity of the bioanalytical data are ultimately the most important attributes. The right
scientific and compliance vigor must be applied to each study. The current regulatory land-
scape for regulated bioanalysis is highly complicated, with guidance from multiple regional
health authorities [2–6]. Since guidance from different regions are not totally harmonized, and
compounded by individual interpretation of different inspectors, it is still quite a challenge to
fully understand and execute the right level of compliance that can be acceptable in the global
filing. Efforts are currently being made to harmonize the guidelines into one single global
guideline ICH-M10 [7].
While timely delivery of bioanalytical data to support project decisions is a must-do item to
meet the ever-tightening drug discovery and development timelines, cost is another attribute
that should not be overlooked. The cost of bioanalysis activities should be carefully managed
to ensure that it stays within the predetermined budget. On the other side, the application of a
LC-MS has also been increasingly used for discovering and measuring endogenous protein or
peptide biomarkers [20, 21].
Both nonclinical development and clinical bioanalytical support are required to follow in-
ternal SOPs and regulatory recommendations. Dozens of SOPs are usually used to address
many aspects of bioanalytical activities ranging from instrument qualification, maintenance,
and calibration, to bioanalytical method validation, sample storage, analysis and destruction,
to data management and archiving, etc. The goal of these SOPs is to ensure the highest data
integrity which can pass the regulatory scrutiny. These SOPs are usually drafted based on spe-
cific regulations and the regulatory guidance from the Food and Drug Administration (FDA)
and other international regulatory agencies, such as the European Medicines Agency (EMA),
and other federal/state requirements, as well as policies at each institute. One of the most im-
portant regulatory guidelines is the US FDA guidance on bioanalytical method validation [2],
which provides a general guideline on establishing important parameters, some of which are
specificity/selectivity, sensitivity, linearity ranges from a lower limit of quantitation (LLOQ) to
an upper limit of quantitation (ULOQ), accuracy, precision, stability, matrix effects, carryover,
recovery, dilution integrity, incurred sample reanalysis (ISR), etc. The method should also
demonstrate reproducibility and accuracy for incurred samples and its suitability for its
intended use. However, it is up to each institute to formulate its own SOPs based on this general
guidance. Typically, method validations can be categorized into full, partial, and cross valida-
tions (Table 1). Most of the validations are conducted in the form of full validation, whereas the
partial or cross validation can be used when a full validation is not required, as shown in the
examples in Table 1.
During the project discussion, it is important to understand the objective of the study so
that important parameters such as matrix type, sample volume, ways of sampling (regular
sampling or microsampling), analytes to be measured (parent or parent plus metabolites),
anticoagulant selection, condition of centrifugation for harvesting plasma, sample storage
container, shipping condition and instruction, sample storage condition (20°C vs.
70°C), etc. can be provided to the project team. While during the early stage of drug
Author: H. W. S. Wright
Language: English
With an Introduction by
London
KEGAN PAUL, TRENCH, TRUBNER & CO., LTD.
New York: E. P. DUTTON & CO.
1925
Printed in Great Britain by
F. Robinson & Co., at The Library Press, Lowestoft
THE CONQUEST OF CANCER
INTRODUCTION
The phrase “Conquest of Cancer”, though perhaps emotive rather
than scientific, nevertheless implies the existence of a very real and
important problem. And this problem, it may be confidently affirmed,
is one that will never be solved, in action, by the efforts of the
medical profession alone. Whatever be the future, and as yet
reserved, revelations of Science, and whatever the further
developments of Art, cancer will not cease to exact its toll unless
medical science and art obtain the intelligent co-operation of an
instructed public. It is for this reason that it has been thought useful
to place before the public this little book, written by a practical
surgeon who has given special attention to the problems of the
laboratory. The book itself, which not only states in simple language
the essential points that should be comprehended by the public, but
puts forward a plan for concerted action, is based upon one of a
series of University Extension lectures given during the winter of
1922–23, at the Shantung Christian University, Tsinan, China, where
Mr Wright is actively engaged in the Surgical Department of the
School of Medicine.