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Textbook Advances in Vision Research Volume Ii Genetic Eye Research in Asia and The Pacific Gyan Prakash Ebook All Chapter PDF
Textbook Advances in Vision Research Volume Ii Genetic Eye Research in Asia and The Pacific Gyan Prakash Ebook All Chapter PDF
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Essentials in Ophthalmology
Series Editor: Arun D. Singh
Gyan Prakash
Takeshi Iwata Editors
Advances in
Vision Research,
Volume II
Genetic Eye Research in Asia and the Pacific
Essentials in Ophthalmology
Series editor
Arun D. Singh
Essentials in Ophthalmology aims to promote the rapid and efficient transfer
of medical research into clinical practice. It is published in four volumes per
year. Covering new developments and innovations in all fields of clinical
ophthalmology, it provides the clinician with a review and summary of recent
research and its implications for clinical practice. Each volume is focused on
a clinically relevant topic and explains how research results impact
diagnostics, treatment options and procedures as well as patient management.
The reader-friendly volumes are highly structured with core messages,
summaries, tables, diagrams and illustrations and are written by internationally
well-known experts in the field. A volume editor supervises the authors in his/
her field of expertise in order to ensure that each volume provides cutting-edge
information most relevant and useful for clinical ophthalmologists.
Contributions to the series are peer reviewed by an editorial board.
Advances in Vision
Research, Volume II
Genetic Eye Research in Asia
and the Pacific
Editors
Gyan Prakash Takeshi Iwata
National Eye Institute National Institute of Sensory Organs
National Institutes of Health Tokyo Medical Center
Bethesda, MD, USA National Hospital Organization
Tokyo, Japan
This Springer imprint is published by the registered company Springer Nature Singapore Pte Ltd.
The registered company address is: 152 Beach Road, #21-01/04 Gateway East, Singapore
189721, Singapore
This book – Volume 2 is dedicated to the blind children of the
world and the next generation of researchers who are choosing
the field of vision research as their career to help understand
the biology of eye diseases
Foreword by Arun D. Singh
vii
Foreword by Peter Wiedemann
Asia as the most populated region in the world is consequently the most
affected with regard to eye diseases. For a long time, research has shown that
genetic variations are widely involved in ocular diseases. The lack of infor-
mation on the genetic basis of eye disease in the Asian population is pertinent,
and the Asian Eye Genetics Consortium (AEGC) was established in 2014 to
close this gap. Focusing and concentrating on research and patient care on
eye disease in Asia, this institution has now grown with a worldwide mem-
bership and numerous research collaborations. In a first book published in
this series “Advances in Vision Research Volume 1, Genetic Research in Asia
and the Pacific,” the editors Dr. Gyan Prakash from NIH, NEI, USA and Dr.
Takeshi Iwata from Japan tried to coordinate the findings from existing
research studies on eye disease in Asians, translate them into patient care, and
to identify areas for further research.
The doubling time for information in medicine is two and a half years. We
benefit from the rapid evolution of basic science in all fields related to biology
and medicine, and especially in relation to ophthalmology and vision. The
radical advance in the understanding of inherited eye disease has placed a
major responsibility on ophthalmologists in their future care of patients.
Genetic research findings must be translated to impact and improve patient
care at the community level.
Now, only one year after the first volume, the same editors completed this
second volume of AEGC Advances in Vision Research. This book is again a
milestone: An update on the AEGC and its scientific outreach is given in the
first part. The challenges and opportunities for genetic research in Asia and
Pacific are then described. Presenting a cross section of genetics research
from different Asian countries the editors have collated a masterful and actual
review of current knowledge and future demands. Key eye diseases are cov-
ered: retinal degenerations, retinoblastoma, glaucoma, myopia, and keratoco-
nus. Assimilating and presenting this wealth of discovery the editors are to be
congratulated for their focus on clinically relevant information. This makes
the book a major resource for researchers and clinicians.
Light and vision have always promoted human development; loss of sight
is among our most basic fears. Ninety percent of the global burden of eye
disease is shouldered by developing countries, many of them in Asia. We
believe there is a human right to sight and the editors must be congratulated
to start and build the AEGC initiative and draw up this report to enhance eye
care to people in this region. While some states of Asia have for a long time
ix
x Foreword by Peter Wiedemann
International
Peter Council of Ophthalmology (ICO) Wiedemann
San Francisco, CA, USA
Leipzig University Eye Hospital
LeipzigGermany
Foreword by Gullapalli N. Rao
One of the greatest advances in eye research during the past quarter century
is in the area of genetics. This has led to greater understanding of the genetic
basis of many of the ocular conditions. The exploitation of this knowledge to
find ways of preserving eye health, preventing some forms of disease, and
modify the course of others are the exciting challenges that are subjects of
worldwide research currently. Genetics research has become an integral part
of most leading eye institutions in the world, and these have not only contrib-
uted to major breakthroughs but also to the growth of researchers through
their graduate programs.
In the recent past, the proliferation of interest and the establishment of
genetics research in Asian institutions is a welcome development. While
some parts of Asia have advanced rapidly, the dissemination of this practice
into many more countries is an encouraging sign. Better and more research
productivity is seen from these centers including greater number of people
completing their doctoral programs. This research capacity building augurs
well for the future of research in the continent.
The efforts of Drs. Gyan Prakash and Takeshi Iwata have provided a fur-
ther boost to the collaborative endeavor among different groups in the region,
which will further accelerate the research on this front. This second edition of
the Asian Eye Genetics Consortium book, Advances in Eye Research, pres-
ents a rich profile of the genetics research from different countries of Asia.
The progress in many of the countries since the last edition is impressive.
This is the result of increasing investment in research in many institutions of
the region. Entry of more younger generation scientists into eye research,
excellent research infrastructure, and increasing number of peer-reviewed
publications in respected journals are all positive signs for a vibrant research
culture. This is slowly flowing into the clinical education programs with more
clinicians engaged in research, both clinical and basic partnering with basic
scientists. Hopefully, this will percolate to medical schools in the region.
Translational research can only happen when a critical mass of clinicians get
into the research mold. Genetics research is a fertile ground that is conducive
for clinicians exposed to the culture of research.
xi
xii Foreword by Gullapalli N. Rao
The content of this volume is a rich blend of the manifestation of all the
above developments. The spectrum of topics provides an excellent profile of
genetics of eye problems in Asia and should be a “must” in all the ophthalmic
libraries of Asia.
My congratulations to Drs. Prakash and Iwata for this wonderful effort.
We have come a long way from the humble beginning of Asian Eye Genetics
Consortium (AEGC) in 2014 to a very active research based collaboration in
vision sciences. The establishment of AEGC has succeeded in creating sev-
eral international collaborations to understand the biology of eye diseases,
training the next generation of research leaders, and application of scientific
knowledge in clinical care and treatment. More than one hundred and seventy
AEGC members from over twenty countries are regularly interacting to
expand our knowledge of eye diseases. In the past year, the consortium has
received numerous inquiries from other regions of the world, including Africa
and South America for similar research collaborations. At the fifth founding
anniversary of the AEGC at ARVO in Honolulu, HI, USA, on May 1st, 2018,
the members present at the meeting unanimously approved the expansion of
AEGC to Global Eye Genetics Consortium (GEGC, http://gegc.org) effective
immediately. GEGC will stand for “a research based consortium for advanc-
ing global vision sciences.”
A concerted global effort like GEGC has the potential to accelerate the
collaborative genetic eye research in generating useful new scientific data to
combat eye diseases. The GEGC is seeking to uncover new scientific oppor-
tunities and identify shared priorities to create unique international collabora-
tions in genetic eye research. The GEGC is creating opportunity to help
establish partnerships among scientists, governments, companies, and non-
government organizations from many countries to support international
research programs for eye diseases.
We have the great honor and privilege to bring out the second volume of
this work on research related to the eye diseases as we have assembled more
than one hundred leading researchers from the field of Human Genetics,
Ophthalmology, Molecular Biology, Biochemistry, Sensory Sciences, clini-
cal research, and non-governmental organizations to present the status of the
growing field of genetic eye research. Our hope is that the second volume
proves to be a major stimulus for all researchers, clinicians, clinical research-
ers, and allied eye health professionals with interest in eye diseases, and
accelerates high quality research in our understanding of eye diseases. We
were privileged to work with a group of authors who are recognized leaders
in their respective areas and who willingly gave their time to contribute to this
volume despite their busy schedules. We are forever in their debt.
This book would not have become a reality without the support, encour-
agement, and assistance of several peers and distinguished colleagues. Chieko
xiii
xiv Preface
xv
xvi Contents
Index......................................................................................................... 465
Asian Eye Genetics Consortium
(AEGC): The First 5 Years 1
Gyan Prakash, Takeshi Iwata, Sundaram Natarajan,
and Paul N. Baird
G. Prakash (*)
National Eye Institute, National Institutes of Health, 1.1 Origin of AEGC
Bethesda, MD, USA
e-mail: gyan.prakash@nih.gov The Asian Eye Genetics Consortium (AEGC)
T. Iwata traces its beginning in December 2012 when Dr.
National Institute of Sensory Organs, Tokyo Medical Deborah Carper, Former Deputy Director,
Center, National Hospital Organization, Tokyo, Japan
National Eye Institute (NEI) at National Institutes
S. Natarajan of Health (NIH) in the USA, introduced Dr. Gyan
Aditya Jyot Research in Vision and Ophthalmology,
Mumbai, India Prakash at NEI to Dr. Takeshi Iwata at National
Institute of Sensory Organs (NISO) at Tokyo
Aditya Jyot Foundation for Twinkling Little Eyes,
Mumbai, India Medical Center (TMC) and helped in developing
a research collaboration agreement between the
Aditya Jyot Eye Hospital, Mumbai, India
two institutions. Subsequent deliberations
P. N. Baird between the two organizations led to the develop-
University of Melbourne, Melbourne, Australia
ment of a research collaboration in April 2014 training between the participating institutions are
signed by Dr. Paul Sieving, Director of NEI, and one of the key goals of the AEGC programs.
Dr. Yozo Miyake (on behalf of TMC) during the Such programs have helped in establishing new
World Ophthalmology Congress in Tokyo. The eye genetic laboratories in the Asian region and
signing of research collaboration between the training the interested researchers and clinicians
two institutions began a series of discussions in eye genetic research. In addition, the data shar-
leading to the establishment of AEGC in May ing is being planned by constructing a common
2014 at ARVO in Orlando, USA, by more than a database for AEGC to pool genotype-phenotype
dozen leading eye researchers from around the information. The AEGC members are working
world. on obtaining new research support grants and
corporate support to conduct whole genome
sequence DNA samples from the countries that
1.2 AEGC: Current Roles have limited or no funding now to support or con-
duct research locally.
The Asian Eye Genetics Consortium (AEGC) was Over 150 eye researchers from more than 20
established to focus on eye research in Asia, the countries have become AEGC members since
most populated region of the world where very the inception. The members are currently inter-
little has been explored for genetic eye diseases. acting and collaborating to develop programs to
The consortium has brought together many scien- share, catalogue, and work to identify the
tists and clinicians from around the world inter- genetic aspect of eye diseases in the Asian
ested in collaborative international eye research countries. The first AEGC book, Advances in
on the patients of Asian region. A concerted global Vision Research – Genetic Eye Research in Asia
effort like AEGC has the potential to accelerate and the Pacific – Volume I, edited by Dr. Gyan
the collaborative genetic eye research in generat- Prakash and Dr. Takeshi Iwata, was published
ing useful new scientific data to help in our under- in May 2017 by Springer (ISBN: 1612-3212).
standing of eye diseases. The AEGC is seeking to The volume contained the work of more than
uncover new scientific opportunities and identify 100 scientists from the USA, Australia, Europe,
shared priorities to create unique international and many Asian countries illustrated in 38
collaborations in genetic eye research. The AEGC chapters [1].
has created a wide opportunity to establish part-
nerships among scientists, governments, compa-
nies, and nongovernment organizations to support 1.3 AEGC Goals
research programs for understanding the biology
of eye diseases. The consortium has brought a AEGC has the following goals and plans:
collective thinking from the researchers around
the world who have interest in genetic eye research 1. Share genetic information in the Asian popu-
in the Asian region. The theme is going to be lation to rapidly isolate common disease-
expanded in other regions of the world with a goal associated variants.
of creating Global Eye Genetics Consortium 2. Establish system for accurate diagnosis and
(GEGC) soon. grouping of Asian eye diseases.
In the last 3 years, several researcher 3. Establish system for cost-effective genetic
exchanges have taken place providing and analysis.
strengthening research collaborations on genetic 4. Develop a research-oriented database to col-
eye research. The scholar’s and visitor’s pro- lect, diagnose and catalog eye diseases in
grams combined with laboratory and clinic-based Asia.
1 Asian Eye Genetics Consortium (AEGC): The First 5 Years 3
5. Support and foster collaboration among the retinal dystrophy in China. Dr. Calvin Pang from
Asian countries for the advancement of China talked about the molecular genetics of pol-
research that will provide genetic information ypoidal choroidal vasculopathy and age-related
in the Asian population. macular degeneration. Dr. Takeshi Iwata from
6. Collaborate with other international or Japan gave the updates on expansion of AEGC,
regional organizations with similar goals. and Dr. Mridul Kumar Sarkar from Bangladesh
7. Organize and hold regional congresses and gave a talk on the genetics of congenital cataract
other educational and scientific activities to in Bangladesh. Dr. Paul Baird from Australia
promote goals of the consortium. moderated the session.
1.4.3 AEGC Meeting and Poster vided an update on the AEGC book, volume I,
Presentation at ARVO, and plans for the proposed volume II. Dr. Paul
Baltimore, USA Baird provided the short- and long-term goals of
the AEGC organization and discussed various
The fourth annual AEGC meeting at ARVO was activities related to researcher exchange, webi-
held on May 9, 2017, to update the progress of nars, and other educational programs. Dr.
AEGC activities. Drs. Takeshi Iwata from Japan Natarajan from India led the discussion on
and Paul Baird from Australia moderated the research funding to support the AEGC programs.
session. Dr. Iwata provided the recent updates on The discussion was supplemented by Drs. Iwata,
the AEGC programs around the world. Dr. Prakash, and Baird and included discussion on
Fujinami from Japan and Dr. Santa Tumminia government funding from NIH-NEI, JSPS,
and Ms. Kerry Goetz from the USA discussed Australia, DBT India, and several other sources
the desired characteristics of the proposed AEGC such as industry (Macrogen, etc.), foundations
database. Dr. Gyan Prakash from the USA pro- (FEB, etc.), and others.
1 Asian Eye Genetics Consortium (AEGC): The First 5 Years 5
1.4.4 ARVO 2018 Poster sion at the ARVO meeting. Several new members
Presentation signed up and discussed collaborative research
ideas with their international counterparts. The
An invited poster presentation at ARVO 2018 in poster presentation led to several successful new
Baltimore drew significant attention and discus- alliances for research partnerships.
1.4.5 AEGC Meeting at Asia-Pacific attended the meeting. Dr. Takeshi Iwata from
Academy of Ophthalmology, Japan summarized the status of the consortium
Hong Kong, China structure, the research funding opportunities,
and the status of genotype-phenotype database.
An AEGC session was held during the APAO Dr. Graham Holder who recently moved from
meeting in Hong Kong on February 8, 2018, to Moorfields Eye Hospital to National University
discuss the progress of genetic research in the of Singapore is setting up a diagnostic lab with
AEGC member countries. A total of 30 people electroretinogram (ERG) and training of young
6 G. Prakash et al.
ophthalmologists. Dr. Muneeb Faiq from All service in the most populated province in China.
India Institute of Medical Sciences in India gave Dr. Govindasamy Kumaramanickavel from
a summary of the genetic research in India and Aditya Jyot Foundation for Twinkling Little
surrounding countries. Dr. Yudisianil E. Kamal Eyes in India provided an update on diagnostic
and Dr. Rita S. Sitorus from University of and sample collection at the first AEGC genetic
Indonesia gave a presentation on the genetic lab in Mumbai, India. Dr. Paul Baird from
polymorphism in hepatocyte growth factor and University of Melbourne in Australia summa-
cMET gene as predisposing factors for myopia. rized the talk and discussed the challenges in
Dr. Bo Lei from Henan Eye Institute in China coordinating research funding and DNA
introduced his work on inherited eye disease sequencing projects.
The 24th annual meeting of the Indian Eye Foundation, Madurai, Tamil Nadu, from July 28
Research Group (IERG) – ARVO India Chapter to 29, 2017. The AEGC component of AJFTLE
Meeting – was held at Aravind Medical Research research team was represented at IERG 2017.
equipped with all basic amenities and instruments • Ability to look at different aspects of disease
needed to perform in-house genetic analysis. such as country-level mutations.
AJFTLE is in the process of making a biobank • Identify rare disease/subtype/clinical feature
for all available clinical specimens obtained and build number of samples.
through surgical procedures during intervention. • Generation of large data sets through more
The samples including peripheral blood for DNA samples.
and RNA isolation, plasma, serum, aqueous, and • Ask a broader range of questions that might
vitreous for biomarker analysis and lens aspirate, already be possible.
trabecular meshwork, epiretinal membrane and • Opportunity to be involved with other groups
inner limiting membrane for epigenetic, pro- in the region.
teomic, and microRNA analysis have been col- • Apply for funding and other opportunities.
lected and stored at −80 °C. • Write papers with bigger impact.
• Better identification of mutations and genes The groups approached around the world all
involved in a retinal disease. spoke of an aspiration of having databases that
• Identify mutations that are novel and specific “could talk to each other,” and this underlying
to the Asian population. thread will be incorporated into a design for a
• Aid in the diagnosis of patients. database.
10 G. Prakash et al.
1.6.2 Clinical Data The outcomes of the database work are to:
Given that medical clinics are extremely busy and • Provide a catalogue of mutations in retinal
that medical staff are time constrained, there was disease across the region.
a consideration as what data should be collected. • Provide a diagnostic molecular tag for a
While data would need to be collected on an indi- patient to aid in diagnosis.
vidual for diagnosis and verification of the pheno- • Provide information to identify missing
type by an independent expert, it was also essential genetic information that could explain retinal
that the collecting clinician should not be overbur- disease.
dened with multiple fields of data entry that would • Provide insights into molecular mechanisms
need to be completed. Critically, it was observed of disease.
that many of the fields necessary for the database • Provide a mechanism to map mutations across
are part of a regular clinical treatment, and so the the region and within countries to look for
requirement would be to ensure that images or main mutational effects.
clinical data were collected at an appropriate • Provide opportunities to develop therapies for
image resolution for assessment and that the clini- different types of retinal disease.
cal data collected met international standards for
diagnostic characterization of the retinal disease.
Therefore, one of the goals of AEGC is to build 1.6.5 The Database Today
this level of excellence across the region.
Initially, it is being planned that the AEGC data-
base will be housed at the Tokyo Medical Center
1.6.3 Genetic Data under Dr. Iwata’s support. Each group will have
access to their own data but not to other groups.
While clinical data is readily available, the The administrator in Japan will have access to the
genetic data related to a patient may not be avail- data that will be de-identified. Each group will
able at the local level. This may come about have a unique identifier for their patient where
through lack of resources, expertise, manpower, they will be able to reidentify the patient and
etc. AEGC aims to facilitate the elucidation of hence provide an unequivocal diagnosis back to
molecular changes that occur in retinal diseases their patient. No identifying information will be
and feed this information back to the treating transmitted between sites. Local ethics will be
doctor. Genetic data to be assessed would need to obtained for all material.
1 Asian Eye Genetics Consortium (AEGC): The First 5 Years 11
— Tulee siitä taas lämmin päivä, arveli Iisakki. Olisi tästä pitänyt
päästä lahnaakin keittämään. Sinunkin verkkosi voi siellä revetä, kun
oikein aikamoinen lahnakarja…
— Älä uhittele!
— Sata markkaa.
— No nyt se on valmis!
— Nii' minust' vaa näyttää kui Rietula sii' olis', jatkoi tämä
tähystellen kilpeä naurusuin.
— Ala painella!
— Menetkö siitä!
— Eihän minulla ole mitään väliä, jos vaan saisi sen Kyrmyniskan
ottamaan pois ne kihlansa.
— Olisi nyt vielä istuttu, esteli Rietula, mutta tyttö meni jo hyvän
matkan päässä.
Oli keskikesä käsissä. Puissa oli täysi lehti ja ruoho kedoilla näytti
rehevältä. Päivät olivat poutaisia, ja kun maa kävi janoiseksi, satoi
öisin, mutta aamuisin hymyili taas poutaisen punainen aurinko.
— Vai pitäisi tässä sinulle vielä auringon nousta! Hätä se on, kun
Rietula saattaa vahtia pitää ja lyöttäytyy sinne jälkeenne
sekaannusta aikaansaamaan, pauhaili emäntä.
— Nyt se Kyrmyniska meni sen Eedlan kanssa… nyt se, rietas, vei
lautamiehen morsiamen. Nouskaa, hyvä isäntä!