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Mass spectrometry
Mass spectrometry is a powerful analytical technique used to quantify known materials, to identify unknown compounds within a sample, and to elucidate the structure and chemical properties of different molecules. The complete process involves the conversion of the sample into gaseous ions, with or without fragmentation, which are then characterized by their mass to charge ratios (m/z) and relative abundances.
The spectra are used to determine The elemental composition of a sample, The masses of molecules, To elucidate the chemical structures of molecules To study isotope abundances Mass spectrometry works by ionizing chemical compounds to generate charged molecules or molecule fragments and measuring their mass-to-charge ratios
Mass Spectrometer
A mass spectrometer converts them to gaseous ions so that they can be moved about and manipulated by external electric and magnetic fields The three essential functions of a mass spectrometer, and the associated components, are: 1. The Ion Source A small sample is ionized, usually to cations by loss of an electron. In addition to creating the ions, the ion source form an ion beam. That is, it will provide some degree of focusing, collimation, and acceleration to the ions. 2. The Mass Analyzer The ions are sorted and separated according to their mass and charge. (or more specifically by momentum or energy) This is done using a combination of electric and magnetic fields, sometimes including RF fields 3. The Detector The separated ions are then measured, and the results displayed on a chart.
Mass Spectrometer
Because ions are very reactive and short-lived, their formation and manipulation must be conducted in a vacuum. Residual gases have to be removed within the ion flight path (so that collisions between ions and resident gas does not diffuse the beam), and any waste gases from the ion source can be removed Atmospheric pressure is around 760 torr (mm of mercury). The pressure under which ions may be handled is roughly 10-5 to 10-8 torr (less than a billionth of an atmosphere).
Each of the three tasks listed above may be accomplished in different ways. In one common procedure, ionization is effected by a high energy beam of electrons, and ion separation is achieved by accelerating and focusing the ions in a beam, which is then bent by an external magnetic field. The ions are then detected electronically and the resulting information is stored and analyzed in a computer
Mass Spectrometer
Ion source. Here molecules of the sample (black dots) are bombarded by electrons (light blue lines) issuing from a heated filament.
This is called an EI (electron-impact) source. Gases and volatile liquid samples are allowed to leak into the ion source from a reservoir Non-volatile solids and liquids may be introduced directly. Cations formed by the electron bombardment (red dots) are pushed away by a charged repeller plate (anions are attracted to it), and accelerated toward other electrodes, having slits through which the ions pass as a beam.
Some of these ions fragment into smaller cations and neutral fragments.
A perpendicular magnetic field deflects the ion beam in an arc whose radius is inversely proportional to the mass of each ion. (If a charge moves into a magnetic field with direction perpendicular to the field, it will follow a circular path. )
When a high energy electron collides with a molecule it often ionizes it by knocking away one of the molecular electrons (either bonding or non-bonding). This leaves behind a molecular ion (colored red in the following diagram). Residual energy from the collision may cause the molecular ion to fragment into neutral pieces (colored green) and smaller fragment ions (colored pink and orange). The molecular ion is a radical cation, but the fragment ions may either be radical cations (pink) or carbocations (orange), depending on the nature of the neutral fragment
The most intense ion is assigned an abundance of 100, and it is referred to as the base peak. Most of the ions formed in a mass spectrometer have a single charge, so the m/z value is equivalent to mass itself. The highest-mass ion in a spectrum is normally considered to be the molecular ion (followed by ions containing heavier isotopes) , and lower-mass ions are fragments from the molecular ion, assuming the sample is a
Ion sources
Function to produce gaseous analyte ions 2 types of sources: a) Gas phase Sources b) Desorption sources
Gas Phase sources: Here the sample is first vapourised and then ionised So they can be used only to ionise thermally stable compounds that have b.p less than 500 C and mol wt less than 1000Da E.g. Electron impact Ionisation (EI) Chemical ionisation (CI) Field Ionisation (FI)
Desorption Sources
Here the solid or liquid state sample is converted directly to gaseous ions Applicable to non volatile and thermally stable samples Does not require volatisation of the compounds and hence applicable to analytes having mass as large as 105 Da E.g. Field desorption (FD) Matrix assisted desorption ionisation((MALDI) Fast atom bombardment (FAB) Plasma Desorption (PD) Thermospray ionisation(TIS Secondary ion mass spectrometry(SIMS)
Hard Sources: Imparts high Energy to the analyte molecules to leave them in a highly excited state This energy surges through the molecule rupturing the bonds and producing the fragment ions that have m/z ratio less than the molecular ion ( less mol wt fragments) So the mass spectrum has many peaks corresponding to small fragments E.G Electron Impact ionisation
Soft Sources
Causes little fragmentation Mass spectrum consits of molecular ion peak and only a few other ion peaks E.g Chemical Ionisation Useful as they supply accurate information about molecular mass of the analyte molecule or molecules Eg Chemical ionisation
Disadvantage: Sometimes fragmentation is so complete that no molecular ion persits Without molecular ion, mol wt information cannot be obtained Need to volatise the sample which may result in thermal degradation before ionisation Applicable only to mol having mass < 1000Da
Isotope peaks: peaks may also occur at m/z ration greater than molecular ion.. This is attributable to ions having the same chemical formula but different isotopic composition.The size of these peaks depends on relative natural abundance of these isotopes Collision product peaks :Peaks seen at high m/z ratio than mol ion
The primary ionisation occurs of the reagent gas as its conc is very high
Most common ions (M+1)+ and (M-1)+, which are known as Quassi molecular ion Spectra of M+ ion is very weak Other reagent gases which are used are Isobutane or ammonia Ion plasma with a high proton affinity causes little or no fragmentation and gives uncomplicated spectrum of sample with an intense quasi molecular ion These spectra are easier to interprete
Desorption Sources
Applicable for non volatile and thermally unstable compounds Also for thermally labile biochemical samples Here energy in various forms is introduced in such a way that it causes direct formation of gaseous ions As a consequence, spectra are generally simplified and consits of M+ ions or protonated (M+1)+ ion E.g.Field desorption methods (FD) Matrix Assisted Laser Desorption Ionisation (MALDI) Electro spray ionisation (ESI) Fast Atom Bombardment (FAB)
MALDI
Advantages of ESI
Little fragmentation of lage thermally labile mol as there is little extra energy retained in the analyte molecule upon ionisation The ions formed are multiply charged , so m/z values are small enough to make them detectable with a quadrupole instrument
ESI is readily adapted to direct the sample introduction from HPLC columns
Used for analysing biomolecules of very high mol wt like polypeptides, proteins, oligonucleotides Also characterisation of inorganic spp and synthetic polymers is possible
FAB