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BIOLOGY 230
DEPARTMENT OF BIOLOGY
GRADUATE SCHOOL
CENTRAL MINDANAO UNIVERSITY
THINGS STUDIED IN QUALITATIVE
GENETICS
1. WAYS BY WHICH GENE AND
GENE PRODUCTS INTERACT
2. INTERPRETATION OF GENETIC
RATIOS BASED ON HOW GENE
PRODUCTS INTERACT IN A
BIOCHEMICAL WAY
3. HOW GENE AFFECTS THE
PHENOTYPE
GENES OF VARIABLE
EXPRESSION
GENETIC CONSTITUTION
= SPECIFIES ORGANISM’S
POTENTIAL TO DEVELOP AND
FUNCTION
ENVIRONMENT
= INFLUENCES GENE
EXPRESSION
1. Pleiotropy
Condition in which a single
mutation simultaneously
affects several characters
Several phenotypes can be
observed
1. Sickle-cell anemia
Anemia
Physical weakness
Heart failure
Mental retardation
Brain damage
Pnemonia
Rheumatism
Kidney failure
Spleen damage
Increased resistance to one type of malaria (Plasmodium
falciparum)
2. Meckel Syndrome
Rare autosomal recessive lethal
gene
Malformation in the CNS
Polydactyly
Multicystic kidney dysplasia
Ductal changes in the liver
2. Phenylketonuria(PKU)
2. Phenylketonuria(PKU)
Homozygous recessive
No phenylalanine hydroxylase
Mental retardation
Albinism
Excretion of phenylalanine the urine
Lower IQ
Smaller head size
Lighter hair color – low synthesis of melanin
PENETRANCE
Frequency in which a dominant or
recessive gene manifests itself in
individuals in a population
Number of individuals expressing
the gene in a population
Types of penetrance
1. Complete penetrance – 100% of the
population with the allele show the
phenotype
Ex.
Polydactyly
short vestigial wings
in Drosophila
Osteogenesis imperfecta
Types of Penetrance
2. Incomplete Penetrance – not all
individuals positive for the gene show
the phenotype
Ex.
a. Harelip – 50% penetrant
b. Dominant retinoblastoma – 90%
-cancer of the eye in children; if affecting optic
nerve, brain will be affected->early death
Types of Penetrance
2. Incomplete Penetrance
Ex.
a. Brachydactyly-50-80% penetrant
- Shortening of index fingers and toes
- Autosomal dominant
b. Neurofibromatosis -50-80%
penetrant
EXPRESSIVITY
Degree to which a particular
phenotypic effect is exhibited in an
individual
The degree of expression of a
genetically controlled trait
Types of expressivity
1. Constant expressivity
- Phenotypes exhibited by individuals
positive for the gene is identical.
2. Variable expressivity
- Phenotypes exhibited by individuals
positive for the gene is not identical.
Examples of variable expressivity
Polydactyly (autosomal dominant)
– different location of extra fingers
Neurofibromatosis
Café-au-lait spot (color of coffee
with milk)
Freckling
Neurofibromas
Examples of variable expressivity
Osteogenesis imperfecta (autosomal
dominant)
Blue sclerae (whites of the eye)
Very fragile bones
deafness
Hapsburg jaw - Mandibular prognathism
Protrusion of the mandible
Dominant
Started in Austria, moved to Spain due to arranged
marriage of Kings
PHENOCOPY
Environmental mimic of gene
action
Environmentally induced
phenotype which closely resemble
the phenotype produced by a
known gene
Examples of phenocopy
Noselift
Breast augmentation
Curly/straight hair
Diabetic individuals with
normal glucose due to insulin
shots
Examples of phenocopy
babies with short limb
– Phocomelia – rare genetic disorder
_ due to thalidomide drug for
morning sickness (1960s)
Sun red cord
Due to 3 genes: A-B-plpl
Pigmentation only in parts exposed
to the sun
Examples of phenocopy
Photosynthetic genes
Expressed only in the presence of
light
Blistering of feet
Due to single dominant gene
Gene alone cannot cause blistering,
hot weather or winter
Tail feather pattern
Examples of phenocopy
Cataracts, deafness, heart defects
in children with mothers infected
with rubella or German measles
Also caused by recessive genes
Yellow fat in rabbits
yy – supposed to be yellow fat; with
no xanthophyll in the diet, colorless
fats are observed
CAUSES OF INCOMPLETE
PENETRANCE AND VARIABLE
EXPRESSIVITY
1. Environmental factors
External enviroment
alleles of other genes
Internal environment
age of onset
Sex
External environment
Drosophila: genes for viability
>28oC – lethal
Low temperature: little or no effect
Primrose flower color
Red flower – 24oC
White flower – 32oC
Siamese cats/Himalayan rabbits
Darker color in paws, ears, nose
Due to low body temperature in the extremities
Internal environment
Age
Reflects internal environment
Can affect gene function
Some genes require programmed
activation and deactivation
Examples
Pattern baldness – 30-40 y.o.
Duchenne muscular dystrophy – 2 to 5
y.o.
Internal environment
Sex
Influences expression of particular
genes
Sex-linked genes = genes of sex
chromosomes
Hemophilia
colorblindness
Internal environment
Sex-limited traits = appear only in one
sex
Feathering pattern in chicken
Female=short tail
Male= long tail
Milk production in dairy cattle
Formation of breasts and ovaries in human
females
Ability to produce egg or sperm
Causes of incomplete penetrance and
variable expressivity
2. Alleles of the other genes
Modifier genes: have secondary effect on
the trait
Ex. 1. gene diluting intensity of
pigmentation in animals : black to gray
2. tailless in Manx cat – no tail to
small no. of fused vertebrae
Detecting Patterns of Gene Expression
Haploid Vs. Diploid
Tetrad Analysis
For haploid
Arrangement of Spores in an ascus
Random meiotic products (gametes)
Use of punnetsquare
Pedigree analysis in humans
Method of detecting gene products
1. Electrophoresis –charged molecule in solution
migrate in response to electrical field
Rate of migration depends on strength of field, net
charge, size and shape of molecules as well as
viscosity, ionic strength and temperature of medium
Low molecular weight – faster migration
Positively charged proteins – migrate towards
negative electrode (cathode)
Negatively charged proteins – migrate towards the
positive electrode (anode)
Method of detecting gene products
1. Electrophoresis
Supporting media – silica gel, alumina,
cellulose, cellulose acetate,agarose gel,
starch gel, polyacrylamide, buffered
aqueous solutions
Factors considered in electrophoresis:
buffer pH, length of running time,
strength of electric field, nature of
substrate
Detection of protein
Chromatography
Electrophoresis (SDS-PAGE)
Use of stains: Coomassie blue
Detection of enzymes
Use of a substrate specific for an
enzyme
Product-enzyme substrate reaction
forms a distinct band
Score for the presence of a band
Band indicates genes are expressed
Detection of enzymes
Use of a substrate specific for an enzyme
Example:
lactate dehydrogenase(LDH)
Lactic acid+ NAD pyruvic acid +NADH
AA AA’ A’A’
▬A’ ▬A’
▬A ▬A
Dimeric protein
AA AA’ A’A’
▬A’A’ ▬A’
▬AA’
▬A ▬AA
Finding the expected number of bands
and relative band densities
Formula: binomial expansion
Number of bands : 5
▬▬A’A’A’A’ ▬A’A’A’A’
▬AA’A’A’
▬AAA’A’
▬AAAA’
▬ AAAA ▬▬AAAA
MODES OF GENE EXPRESSION
AND INTERACTION
•FUNDAMENTAL RATIOS AND MODIFIED RATIOS
•INTERPRETATION WILL BE BASED ON GENE PRODUCT INTERACTION
•HOW THE GENE PRODUCTS ARE INVOLVED IN A BIOCHEMICAL
PATHWAY
1. SIMILAR GENES SPECIFYING
A TRAIT
1. ALLELIC INTERACTIONS
Allelic genes = similar genes specifying a trait
Genes in the same locus but specifying for alternative forms
of a trait
Ex. Color of seed: Yellow (Y-), green (yy)
Type of seed: Smooth (S-), wrinkled ( ss)
A. COMPLETE DOMINANCE
Wild type allele- codes for normal functional protein
Mutant allele- encodes defective protein
Nonsense mutation
Decrease or eliminate functional activity of protein
AA = Aa (same phenotype)
Why?
Aa enzyme
Present but half (50%)
adequate to provide a normal phenotype
Complete dominance (examples)
Phenylketunoria (PKU) – absence of
phenylalanine hydroxylase
Albinism – absence of tyrosinase so no melanin
synthesis
Tay Sachs disease – absence of hexosaminidase A
Defect in lipid metabolism: paralysis, blindness,
early death
Lesch Nyhan Syndrome – absence of HPRT
(hypoxanthine-guanine RT); self-mutilation
CODOMINANCE
Each allele has equal contribution
Examples:
1. Blood type AB
2. Esterase in Drosphila = Aa= 2 bands (fast
and slow bands)
3. Amylase in corn = Aa = amylase 1 and
amylase 2*
Incomplete Dominance
Heterozygote has intermediate phenotype
Example: (Color of Four-o’clock flower)
Rr = pink = 50%of normal protein is not
enough to produce red colot
Mutant allele (rr) – white phenotype = no
functional protein for pigmentation
Overdominance
Heterozygote is superior than
homozygote.
Some proteins are composed of
subunits.
2 subunits –dimer
Homodimer protein- both units are
encoded by the same gene
Example of overdominance
A exists in two alleles
A1 = polypeptide A1
A2 = polypeptide A2
A1A1 A1A1
A2A2A2A2
A1A2 A1A1,A1A2, A2A2 (3 forms of homodimer)
A1A2 homodimer
better functional activity
Can function under a wide range of condition
Superior compared tohomozygote
Example of overdominance
A1 = enzyme functioning at low temp
A2 = enzyme functioning at high temp
++ +l ll
▬ ▬ Hybrid
protein
▬
▬ ▬
Allelic complementation:
Alcohol dehydrogenase in tomato
▬ ▬ Hybrid
protein
▬
▬ ▬
Similar genes specifying a trait
2. Isoloci interaction
Isoloci :
nucleotide sequence in two or more loci
Specifying for an isozyme
Isozyme :
different molecular forms of an enzyme
Similar enzymatic activity
AA Aa aa Allelic
complementation/
Incomplete
dominance/
codominance
Aa
AA aa Complete
dominance
Aa AA aa Overdominance
AA aa Aa Overdominance
Genetic Mechanisms of Isozyme
Formation
Multilocus system I
Different genes would be coding for independent proteins
with the same enzymatic activity
Multilocus system II
Enzymes involved are polymeric; subunits coded by more
than one locus
Multilocus polymeric system
Enzymes are polymeric composed of nonidentical subunits
Isozymes are combination of subunits
Allozyme system
Encoded by allelic gens; hence, called allozymes
Testing gene mutations for allelism
(same locus)
Do crosses
New recessive mutation x recessive mutation of
known gene
Principle of the test:
If two mutations are combined, the organism will be
abnormal for this function.
A mutant phenotype will be exhibited. Thus, two
genes are allelic.
If wild type is obtained. Then the two genes are not
allelic.
Example
c-c- x aa wild type ( 2 genes are not allelic)
c-c- x cc mutant type ( 2 genes/mutations are
not allelic)
Immunoglobulin or
antibody structure
Types of antibodies:
1. IgM
2. IgD
3. IgG
4. IgA
5. IgE
IgM
Constant and variable
regions of immunoglobulin chains.
Mechanisms of antibody diversity
1. Germline theory
functional antibody genes are encoded in the
germline or zygote
Mechanisms of antibody diversity
2. Somatic mutation
Mechanisms of antibody diversity
3. Multispecificity or cross reactivity
Aro2 1. dihydroquinase
2. Dihydroquinic acid
synthetase
3.Dihydroshikinic acid
reductase
4. Shikimic acid kinase
Examples of clustered heteroloci
Lac operon in Escherichia coli
Mode of interaction between
dispersed heteroloci
1. Gene products specify a protein
Example: Tryptophan in Neurospora
A → B → C → D
Example
Arginine biosynthesis in E. coli
Collection of mutants that cant synthesize
arginine
↑ ↑
Enzyme Enzyme A
C
↑ ↑
Gene C Gene A
Dominant epistasis
3 types of onion
R- : pigment production (red pigments)
rr (slight amount of pigments to form yellow
I- : dominant inhibitor
↑ ↑
Inhibitor Enzyme R
I
↑ ↑
Gene I Gene R
White x White
Dominant epistasis leghorn Wyandotte
P1: x iicc
IICC
I- : color inhibition
dominant over color F1: IiCc x IiCc
allele
white white
C- : color dominant to
F2: 9 I-C- 9 white:
white(cc)
cc is epistatic to C 3 I-cc 3 white
3 iiC- 3 colored
1 iicc 1 white
13 white: 3 colored
Dominant epistasis in chicken
feather color
Growth pattern in
F2: 9 A-B- 9 spring:
wheat
A = spring 3 A-bb 3 spring:
B = spring
3 aaB- 3 spring:
1 aabb 1 winter
15 spring : 1 winter
Growth pattern in wheat
Substrate → → → Spring
wheat
↑ ↑
Enzyme Enzyme
A B
↑ ↑
Gene A Gene B
Duplicate genes
Shape of capsules of
shepherd’s purse
A = triangular is
dominant over ovoid
B = triangular is F2: 9 A-B- 9 triangular
dominant over ovoid 3 A-bb 3 triangular
3 aaB- 3 triangular
1 aabb 1 ovoid
15 triangular : 1 ovoid
Growth pattern in wheat
Gene A
↓
Enzyme triangular
A
↓
Precursor
↑ triangular
Enzyme
B
↑
Gene B
Novel Phenotypes rose x pea
P1: x rrPP
When both genes are RRpp
dominant or both are
recessive F1: RrPp x RrPp
Comb in chicken
R- rose dominant
F2: 9 R-P- 9 walnut
over nonrose (rr)
3 R-pp 3 rose
P- pea dominant over
3 rrP- 3 pea
nonpea (pp)
1 rrpp 1 single
Single walnut
↑ rose
Enzyme
R
↑
Gene R
Novel phenotypes
Color of corn snake
(Elaphe guttata)
F2: 9 O-B- 9 natural
3 O-bb 3 orange
3 ooB- 3 black
1 ooabb 1 albino
Color of corn snake
Gene O
↓
Enzyme orange
O
↓
Albino natural
↑ black
Enzyme
B
↑
Gene B
LETHAL GENES
LETHAL GENES
Changes in nucleotide sequences
Changes in protein
Death
Modification of zygotic ratio
Differential mortality
LETHAL ALLELE IN RATS
Abnormal
Cartilage
Abnormal Other
chest organs anomalities
Diseased
lungs
DEATH
How do lethal alleles kill?
Allele causes a deficiency of some essential
chemical reactions
Allele causes structural defect
Types of lethal alleles
1. Produces a recognizable phenotype in the heterozygote
Yellow mouse (yy) –die before birth
Manx cat (no tail)
MlMl : severe external dev’t abnormaltity: death
MLMl : absence of a tail
Dexter in cattle – bulldog calves; aborted before birth
Xeroderma pigmemtosum (humans) –sensitive to UV light
Lacks DNA repair enzymes Skin cancer
Infantile amaurotic idocy (human) – Tay Sach’s disease
No hexosaminidase A acummulation of gangliosides (300x) in
the brain
Death before 4 y.o.
Types of lethal alleles
2. Fully dominant and kill in one dose in the heterozygote
(AA/Aa = death)
Epiloia or tuberous sclerosis
Tumor-like formation in skin and organs
Severe mental defects
Huntington’s disease
Involuntary movements
Progressive degeneration of CNS
Symptom: 30 y.o.
Death: 40 y.o.
3. Confer no detectable effect on the heterozygote
Lethality is recessive (aa= death)