The All-Species Living Tree (Release LTPs111):

February 2013

16S rRNA-based phylogenetic tree harboring all type strains of all species
with validly published names up to August 2012.

Type species are highlighted in red. Incorrectly affiliated and ungrouped

species are indicated by their valid family.

For suggestions please contact:

linving-tree@arb-silva.de

For further information and downloads:

www.elsevier.de/syapm
www.arb-silva.de/projects/living-tree
www.arb-home.de
www.bacterio.cict.fr

References:

R. Munoz, P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.H. Schleifer, F.O. Glöckner, R.

Rosselló-Móra. Release LTPs104 of the All-Species Living Tree. Syst. Appl.
Microbiol. 34 (2011) 169-170.
http://www.dx.doi.org/10.1016/j.syapm.2011.03.001

P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.-H. Schleifer, F.O. Glöckner, R. Rosselló-

Móra. Update of the All-Species Living Tree Project based on 16S and 23S rRNA
sequence analyses. Syst. Appl. Microbiol. 33 (2010) 291-299.
http://www.dx.doi.org/10.1016/j.syapm.2010.08.001

P. Yarza, M. Richter, J. Peplies, J. Euzéby, R. Amann, K.-H. Schleifer, W. Ludwig, F.O.

Glöckner, R. Rosselló-Móra. The All-Species Living Tree Project: a 16S rRNA-based
phylogenetic tree of all sequenced type strains. Syst. Appl. Microbiol. 31 (2008)
241-250.
http://www.dx.doi.org/10.1016/j.syapm.2008.07.001
Bacteria (9340)

Proteobacteria (3196)

Gammaproteobacteria and Betaproteobacteria (2094)

Enterobacteriaceae and Pasteurellaceae (316)

GU810925, Erwinia oleae, Enterobacteriaceae
GU166291, Erwinia typographi, Enterobacteriaceae
GQ367478, Pantoea calida, Enterobacteriaceae
GQ367483, Pantoea gaviniae, Enterobacteriaceae
FR870447, Erwinia toletana, Enterobacteriaceae
AJ233413, Pantoea cypripedii, Enterobacteriaceae
DQ504305, Pantoea dispersa, Enterobacteriaceae
JF295057, Pantoea wallisii, Enterobacteriaceae
FN547376, Erwinia aphidicola, Enterobacteriaceae
Z96086, Erwinia persicina, Enterobacteriaceae
AJ233417, Erwinia rhapontici, Enterobacteriaceae
AM055716, Erwinia tasmaniensis, Enterobacteriaceae
AJ233410, Erwinia amylovora, type sp., Enterobacteriaceae
AB546198, Erwinia uzenensis, Enterobacteriaceae
EU216736, Pantoea eucrina, Enterobacteriaceae
AJ233414, Erwinia mallotivora, Enterobacteriaceae
JQ809696, Erwinia psidii, Enterobacteriaceae
Y13250, Erwinia tracheiphila, Enterobacteriaceae
AJ233423, Pantoea agglomerans, type sp., Enterobacteriaceae
EF688012, Pantoea vagans, Enterobacteriaceae
EF688009, Pantoea eucalypti, Enterobacteriaceae
EF688010, Pantoea anthophila, Enterobacteriaceae
EU216737, Pantoea conspicua, Enterobacteriaceae
EF688011, Pantoea deleyi, Enterobacteriaceae
EU216735, Pantoea brenneri, Enterobacteriaceae
U80196, Pantoea ananatis, Enterobacteriaceae
AY530795, Pantoea allii, Enterobacteriaceae
U80208, Pantoea stewartii subsp. stewartii, Enterobacteriaceae
EU216734, Pantoea septica, Enterobacteriaceae
AJ010486, Enterobacter pyrinus, Enterobacteriaceae
AB004748, Enterobacter gergoviae, Enterobacteriaceae
AJ508302, Enterobacter hormaechei, Enterobacteriaceae
AF530476, Escherichia vulneris, Enterobacteriaceae
AJ853891, Enterobacter ludwigii, Enterobacteriaceae
EU721605, Enterobacter mori, Enterobacteriaceae
Z96078, Enterobacter cancerogenus, Enterobacteriaceae
AB004744, Enterobacter asburiae, Enterobacteriaceae
Z96077, Enterobacter nimipressuralis, Enterobacteriaceae
U78182, Raoultella ornithinolytica, Enterobacteriaceae
AF129443, Raoultella planticola, type sp., Enterobacteriaceae
AB004750, Enterobacter aerogenes, Enterobacteriaceae
EF688007, Tatumella terrea, Enterobacteriaceae
AJ233437, Tatumella ptyseos, type sp., Enterobacteriaceae
FJ756351, Tatumella punctata, Enterobacteriaceae
AB021400, Pseudomonas flectens, Pseudomonadaceae
EU344769, Tatumella morbirosei, Enterobacteriaceae
DQ838096, Tatumella citrea, Enterobacteriaceae
AF008579, Kluyvera ascorbata, type sp., Enterobacteriaceae
AF047186, Kluyvera georgiana, Enterobacteriaceae
AF310217, Kluyvera intermedia, Enterobacteriaceae
AF310218, Kluyvera cryocrescens, Enterobacteriaceae
AF025368, Citrobacter braakii, Enterobacteriaceae
AF025369, Citrobacter murliniae, Enterobacteriaceae
AF025373, Citrobacter werkmanii, Enterobacteriaceae
AF129440, Klebsiella oxytoca, Enterobacteriaceae
AJ233408, Citrobacter freundii, type sp., Enterobacteriaceae
AB519796, Yokenella regensburgei, type sp., Enterobacteriaceae
AF025367, Citrobacter gillenii, Enterobacteriaceae
AJ233400, Buttiauxella agrestis, type sp., Enterobacteriaceae
AJ233401, Buttiauxella brennerae, Enterobacteriaceae
AJ233402, Buttiauxella ferragutiae, Enterobacteriaceae
AJ233403, Buttiauxella gaviniae, Enterobacteriaceae
AJ233406, Buttiauxella warmboldiae, Enterobacteriaceae
AJ233405, Buttiauxella noackiae, Enterobacteriaceae
JF295053, Pantoea rodasii, Enterobacteriaceae
JF295055, Pantoea rwandensis, Enterobacteriaceae
AJ233404, Buttiauxella izardii, Enterobacteriaceae
AB004749, Enterobacter amnigenus, Enterobacteriaceae
AJ508301, Enterobacter kobei, Enterobacteriaceae
Y17658, Raoultella terrigena, Enterobacteriaceae
EF059838, Cronobacter dublinensis subsp. lactaridi, Enterobacteriaceae
EF059892, Cronobacter dublinensis subsp. dublinensis, Enterobacteriaceae
EF059841, Cronobacter dublinensis subsp. lausannensis, Enterobacteriaceae
EF059845, Cronobacter muytjensii, Enterobacteriaceae
EF059877, Cronobacter universalis, Enterobacteriaceae
EF059891, Cronobacter turicensis, Enterobacteriaceae
EF059881, Cronobacter malonaticus, Enterobacteriaceae
EF088379, Cronobacter sakazakii, type sp., Enterobacteriaceae
FN539031, Cronobacter condimenti, Enterobacteriaceae
FJ267523, Shimwellia pseudoproteus, type sp., Enterobacteriaceae
FJ267520, Shimwellia blattae, Enterobacteriaceae
EF488759, Enterobacter oryzae, Enterobacteriaceae
AY563134, Enterobacter radicincitans, Enterobacteriaceae
EU672801, Enterobacter arachidis, Enterobacteriaceae
AJ508303, Enterobacter cowanii, Enterobacteriaceae
DQ273684, Enterobacter pulveris, Enterobacteriaceae
AJ508775, Escherichia albertii, Enterobacteriaceae
X80725, Escherichia coli, type sp., Enterobacteriaceae
X96963, Shigella flexneri, Enterobacteriaceae
AF530475, Escherichia fergusonii, Enterobacteriaceae
FR870445, Shigella sonnei, Enterobacteriaceae
X96966, Shigella dysenteriae, type sp., Enterobacteriaceae
HQ992945, Citrobacter koseri, Enterobacteriaceae
AB273741, Citrobacter youngae, Enterobacteriaceae
AY373829, Salmonella subterranea, Enterobacteriaceae
AY373830, Trabulsiella guamensis, type sp., Enterobacteriaceae
DQ453129, Trabulsiella odontotermitis, Enterobacteriaceae
FR870441, Citrobacter amalonaticus, Enterobacteriaceae
AF025371, Citrobacter farmeri, Enterobacteriaceae
AF025363, Citrobacter rodentium, Enterobacteriaceae
AF025364, Citrobacter sedlakii, Enterobacteriaceae
AF008580, Salmonella enterica subsp. arizonae, Enterobacteriaceae
EU014684, Salmonella enterica subsp. houtenae, Enterobacteriaceae
 EU014680, Salmonella enterica subsp. indica, Enterobacteriaceae
EU014685, Salmonella enterica subsp. salamae, Enterobacteriaceae
EU014688, Salmonella enterica subsp. diarizonae, Enterobacteriaceae
EF643377, Mangrovibacter plantisponsor, type sp., Enterobacteriaceae
AF029227, Salmonella bongori, Enterobacteriaceae
AE006468, Salmonella enterica subsp. enterica, type sp., Enterobacteriaceae
Z96079, Enterobacter cloacae subsp. dissolvens, Enterobacteriaceae
AJ251469, Enterobacter cloacae subsp. cloacae, type sp., Enterobacteriaceae
AF250285, Klebsiella singaporensis, Enterobacteriaceae
AJ783916, Klebsiella variicola, Enterobacteriaceae
X87276, Klebsiella pneumoniae subsp. pneumoniae, type sp., Enterobacteriaceae
Y17657, Klebsiella pneumoniae subsp. rhinoscleromatis, Enterobacteriaceae
AF130982, Klebsiella pneumoniae subsp. ozaenae, Enterobacteriaceae
AJ854062, Serratia ureilytica, Enterobacteriaceae
GU814270, Enterobacter soli, Enterobacteriaceae
AF493976, Cedecea davisae, type sp., Enterobacteriaceae
AB086230, Cedecea neteri, Enterobacteriaceae
AB050826, Edwardsiella ictaluri, Enterobacteriaceae
AB050827, Edwardsiella tarda, type sp., Enterobacteriaceae
AB050825, Edwardsiella hoshinae, Enterobacteriaceae
GU562337, Gibbsiella quercinecans, type sp., Enterobacteriaceae
AB004751, Serratia rubidaea, Enterobacteriaceae
AB061685, Serratia marcescens subsp. sakuensis, Enterobacteriaceae
EU036987, Serratia nematodiphila, Enterobacteriaceae
AJ233431, Serratia marcescens subsp. marcescens, type sp., Enterobacteriaceae
AJ233432, Serratia odorifera, Enterobacteriaceae
AJ233427, Serratia entomophila, Enterobacteriaceae
AJ233428, Serratia ficaria, Enterobacteriaceae
AF366383, Yersinia pestis, type sp., Enterobacteriaceae
AF366375, Yersinia pseudotuberculosis, Enterobacteriaceae
AM182404, Yersinia similis, Enterobacteriaceae
AF366385, Yersinia ruckeri, Enterobacteriaceae
AJ233407, Budvicia aquatica, type sp., Enterobacteriaceae
EF179119, Yersinia massiliensis, Enterobacteriaceae
AF366377, Yersinia bercovieri, Enterobacteriaceae
AJ627597, Yersinia aleksiciae, Enterobacteriaceae
AF366376, Yersinia aldovae, Enterobacteriaceae
AF366382, Yersinia mollaretii, Enterobacteriaceae
GQ451990, Yersinia pekkanenii, Enterobacteriaceae
AF366384, Yersinia rohdei, Enterobacteriaceae
AF366379, Yersinia frederiksenii, Enterobacteriaceae
AF366381, Yersinia kristensenii, Enterobacteriaceae
AF366380, Yersinia intermedia, Enterobacteriaceae
FJ717338, Yersinia nurmii, Enterobacteriaceae
DQ400782, Yersinia entomophaga, Enterobacteriaceae
FR729477, Yersinia enterocolitica subsp. palearctica, Enterobacteriaceae
AF366378, Yersinia enterocolitica subsp. enterocolitica, Enterobacteriaceae
AJ233426, Rahnella aquatilis, type sp., Enterobacteriaceae
M59155, Hafnia alvei, type sp., Enterobacteriaceae
AJ233422, Obesumbacterium proteus, type sp., Enterobacteriaceae
FM179943, Hafnia paralvei, Enterobacteriaceae
AJ233429, Serratia fonticola, Enterobacteriaceae
FJ790328, Serratia glossinae, Enterobacteriaceae
AJ233434, Serratia proteamaculans, Enterobacteriaceae
AJ233435, Serratia quinivorans, Enterobacteriaceae
AJ233430, Serratia grimesii, Enterobacteriaceae
AJ306725, Serratia liquefaciens, Enterobacteriaceae
AJ233433, Serratia plymuthica, Enterobacteriaceae
GU394001, Serratia symbiotica, Enterobacteriaceae

Pasteurellaceae (73)
AF228001, Gallibacterium anatis, type sp., Pasteurellaceae
L06078, Gallibacterium salpingitidis, Pasteurellaceae
EU423985, Gallibacterium melopsittaci, Pasteurellaceae
EU339199, Gallibacterium trehalosifermentans, Pasteurellaceae
AY216869, Volucribacter amazonae, Pasteurellaceae
AY216868, Volucribacter psittacicida, type sp., Pasteurellaceae
AY362921, Avibacterium gallinarum, type sp., Pasteurellaceae
M75070, Avibacterium volantium, Pasteurellaceae
AY498868, Avibacterium paragallinarum, Pasteurellaceae
M75058, Avibacterium avium, Pasteurellaceae
AF024525, Actinobacillus succinogenes, Pasteurellaceae
AF549387, Histophilus somni, type sp., Pasteurellaceae
AY362907, Haemophilus haemoglobinophilus, Pasteurellaceae
AY362891, Actinobacillus indolicus, Pasteurellaceae
AY362909, Haemophilus parasuis, Pasteurellaceae
AY362886, Actinobacillus capsulatus, Pasteurellaceae
M75061, Haemophilus paracuniculus, Pasteurellaceae
AY362919, Pasteurella canis, Pasteurellaceae
M75052, Pasteurella oralis, Pasteurellaceae
AY362920, Pasteurella dagmatis, Pasteurellaceae
AY362925, Pasteurella stomatis, Pasteurellaceae
AF294412, Pasteurella multocida subsp. gallicida, Pasteurellaceae
AF294410, Pasteurella multocida subsp. multocida, type sp., Pasteurellaceae
AF294411, Pasteurella multocida subsp. septica, Pasteurellaceae
AF224292, Haemophilus felis, Pasteurellaceae
AY508816, Nicoletella semolina, type sp., Pasteurellaceae
HM439607, Mannheimia caviae, Pasteurellaceae
AF053893, Mannheimia varigena, Pasteurellaceae
AF053902, Mannheimia granulomatis, Pasteurellaceae
AF053889, Mannheimia glucosida, Pasteurellaceae
M75080, Mannheimia haemolytica, type sp., Pasteurellaceae
AF053900, Mannheimia ruminalis, Pasteurellaceae
FJ463881, Basfia succiniciproducens, type sp., Pasteurellaceae
AY362927, Bibersteinia trehalosi, type sp., Pasteurellaceae
AY362917, Pasteurella bettyae, Pasteurellaceae
AY362893, Actinobacillus minor, Pasteurellaceae
M75076, Haemophilus paraphrohaemolyticus, Pasteurellaceae
AY172727, Actinobacillus anseriformium, Pasteurellaceae
AY362892, Actinobacillus lignieresii, type sp., Pasteurellaceae
M75074, Actinobacillus pleuropneumoniae, Pasteurellaceae
AY362900, Actinobacillus ureae, Pasteurellaceae
AF247716, Actinobacillus equuli subsp. haemolyticus, Pasteurellaceae
AF381186, Actinobacillus equuli subsp. equuli, Pasteurellaceae
AY362890, Actinobacillus hominis, Pasteurellaceae
AY362899, Actinobacillus suis, Pasteurellaceae
L06084, Actinobacillus arthritidis, Pasteurellaceae
AY362918, Pasteurella caballi, Pasteurellaceae
AY362894, Actinobacillus muris, Pasteurellaceae
GU966652, Necropsobacter rosorum, type sp., Pasteurellaceae
AY362895, Actinobacillus rossii, Pasteurellaceae
AY362922, Pasteurella langaaensis, Pasteurellaceae
U65583, Actinobacillus porcinus, Pasteurellaceae
Y17189, Lonepinella koalarum, type sp., Pasteurellaceae
 AJ243202, Pasteurella skyensis, Pasteurellaceae
X89379, Phocoenobacter uteri, type sp., Pasteurellaceae
M63900, Haemophilus ducreyi, Pasteurellaceae
AY362889, Actinobacillus delphinicola, Pasteurellaceae
Y09653, Actinobacillus scotiae, Pasteurellaceae
GU295084, Bisgaardia hudsonensis, type sp., Pasteurellaceae
M75039, Aggregatibacter actinomycetemcomitans, type sp., Pasteurellaceae
AY362906, Aggregatibacter aphrophilus, Pasteurellaceae
M75043, Aggregatibacter segnis, Pasteurellaceae
AY362897, Actinobacillus seminis, Pasteurellaceae
AY362923, Pasteurella mairii, Pasteurellaceae
U66491, Pasteurella aerogenes, Pasteurellaceae
AJ290755, Haemophilus pittmaniae, Pasteurellaceae
AY362924, Pasteurella pneumotropica, Pasteurellaceae
AY362905, Haemophilus aegyptius, Pasteurellaceae
M35019, Haemophilus influenzae, type sp., Pasteurellaceae
AY362908, Haemophilus parainfluenzae, Pasteurellaceae
JF506642, Haemophilus sputorum, Pasteurellaceae
EU331064, Chelonobacter oris, type sp., Pasteurellaceae
AY362926, Pasteurella testudinis, Pasteurellaceae

FJ612598, Orbus hercynius, type sp., Unclassified Gammaproteobacteria

AY837748, Thorsellia anophelis, type sp., Enterobacteriaceae
AY264674, Arsenophonus nasoniae, type sp., Enterobacteriaceae
AJ560630, Photorhabdus luminescens subsp. kayaii, Enterobacteriaceae
AJ007404, Photorhabdus luminescens subsp. laumondii, Enterobacteriaceae
HM072284, Photorhabdus luminescens subsp. kleinii, Enterobacteriaceae
EU930342, Photorhabdus luminescens subsp. hainanensis, Enterobacteriaceae
AJ007359, Photorhabdus luminescens subsp. akhurstii, Enterobacteriaceae
EU930345, Photorhabdus luminescens subsp. caribbeanensis, Enterobacteriaceae
AJ560634, Photorhabdus temperata subsp. thracensis, Enterobacteriaceae
AY280572, Photorhabdus asymbiotica subsp. australis, Enterobacteriaceae
EU136626, Photorhabdus temperata subsp. cinerea, Enterobacteriaceae
AY278657, Photorhabdus temperata subsp. khanii, Enterobacteriaceae
EF467859, Photorhabdus temperata subsp. stackebrandtii, Enterobacteriaceae
AJ007405, Photorhabdus temperata subsp. temperata, Enterobacteriaceae
EU930339, Photorhabdus temperata subsp. tasmaniensis, Enterobacteriaceae
Z76755, Photorhabdus asymbiotica subsp. asymbiotica, Enterobacteriaceae
X82248, Photorhabdus luminescens subsp. luminescens, type sp., Enterobacteriaceae
AY278675, Xenorhabdus beddingii, Enterobacteriaceae
D78010, Xenorhabdus poinarii, Enterobacteriaceae
DQ211709, Xenorhabdus doucetiae, Enterobacteriaceae
DQ211717, Xenorhabdus romanii, Enterobacteriaceae
DQ211710, Xenorhabdus griffiniae, Enterobacteriaceae
DQ211715, Xenorhabdus mauleonii, Enterobacteriaceae
AY278674, Xenorhabdus nematophila, type sp., Enterobacteriaceae
HQ877464, Xenorhabdus magdalenensis, Enterobacteriaceae
AY521244, Xenorhabdus cabanillasii, Enterobacteriaceae
AM040494, Xenorhabdus indica, Enterobacteriaceae
DQ211713, Xenorhabdus miraniensis, Enterobacteriaceae
AJ810295, Xenorhabdus szentirmaii, Enterobacteriaceae
AY278673, Xenorhabdus bovienii, Enterobacteriaceae
AJ810293, Xenorhabdus budapestensis, Enterobacteriaceae
AJ810294, Xenorhabdus ehlersii, Enterobacteriaceae
DQ211716, Xenorhabdus kozodoii, Enterobacteriaceae
DQ205450, Xenorhabdus koppenhoeferi, Enterobacteriaceae
D78008, Xenorhabdus japonica, Enterobacteriaceae
DQ205447, Xenorhabdus vietnamensis, Enterobacteriaceae
AJ810292, Xenorhabdus innexi, Enterobacteriaceae
DQ202309, Xenorhabdus stockiae, Enterobacteriaceae
DQ211719, Xenorhabdus hominickii, Enterobacteriaceae
DQ885256, Proteus mirabilis, Enterobacteriaceae
DQ885258, Proteus penneri, Enterobacteriaceae
DQ885257, Proteus vulgaris, type sp., Enterobacteriaceae
FR733709, Proteus hauseri, Enterobacteriaceae
DQ885259, Cosenzaea myxofaciens, type sp., Enterobacteriaceae
AJ301684, Providencia alcalifaciens, type sp., Enterobacteriaceae
AM040489, Providencia rustigianii, Enterobacteriaceae
HM038004, Providencia burhodogranariea, Enterobacteriaceae
AM040490, Providencia heimbachae, Enterobacteriaceae
AM040492, Providencia rettgeri, Enterobacteriaceae
AM040495, Providencia vermicola, Enterobacteriaceae
AF008581, Providencia stuartii, Enterobacteriaceae
HM038003, Providencia sneebia, Enterobacteriaceae
DQ358146, Morganella morganii subsp. sibonii, Enterobacteriaceae
AJ301681, Morganella morganii subsp. morganii, type sp., Enterobacteriaceae
DQ358135, Morganella psychrotolerans, Enterobacteriaceae
AJ233421, Leminorella grimontii, type sp., Enterobacteriaceae
AJ233424, Pragia fontium, type sp., Enterobacteriaceae
AJ233416, Lonsdalea quercina subsp. quercina, Enterobacteriaceae
U80210, Brenneria salicis, type sp., Enterobacteriaceae
JF311441, Lonsdalea quercina subsp. iberica, Enterobacteriaceae
JF311442, Lonsdalea quercina subsp. britannica, Enterobacteriaceae
AM774412, Biostraticola tofi, type sp., Enterobacteriaceae
M99060, Sodalis glossinidius, type sp., Enterobacteriaceae
AJ233418, Brenneria rubrifaciens, Enterobacteriaceae
AF520707, Dickeya dadantii, Enterobacteriaceae
AF520708, Dickeya dianthicola, Enterobacteriaceae
Z96096, Dickeya paradisiaca, Enterobacteriaceae
AJ233412, Dickeya chrysanthemi, type sp., Enterobacteriaceae
AF520712, Dickeya dadantii subsp. dieffenbachiae, Enterobacteriaceae
AF520711, Dickeya zeae, Enterobacteriaceae
U80203, Brenneria nigrifluens, Enterobacteriaceae
AJ233409, Brenneria alni, Enterobacteriaceae
AF273037, Samsonia erythrinae, type sp., Enterobacteriaceae
AJ223407, Pectobacterium carotovorum subsp. odoriferum, Enterobacteriaceae
AJ233411, Pectobacterium carotovorum subsp. carotovorum, type sp., Enterobacteriaceae
AJ223409, Pectobacterium cacticida, Enterobacteriaceae
U80199, Pectobacterium wasabiae, Enterobacteriaceae
Z96090, Pectobacterium atrosepticum, Enterobacteriaceae
U80198, Pectobacterium betavasculorum, Enterobacteriaceae
X60418, Plesiomonas shigelloides, type sp., Enterobacteriaceae

Aeromonadaceae and Succinivibrionaceae (42)

FJ230076, Aeromonas sanarellii, Aeromonadaceae
FJ230077, Aeromonas taiwanensis, Aeromonadaceae
X71121, Aeromonas enteropelogenes, Aeromonadaceae
X60408, Aeromonas punctata subsp. punctata, Aeromonadaceae
AJ508765, Aeromonas hydrophila subsp. dhakensis, Aeromonadaceae
EU085557, Aeromonas aquariorum, Aeromonadaceae
X74674, Aeromonas punctata subsp. caviae, Aeromonadaceae
AM262151, Aeromonas hydrophila subsp. ranae, Aeromonadaceae
X60410, Aeromonas media, Aeromonadaceae
DQ207728, Aeromonas hydrophila subsp. hydrophila, type sp., Aeromonadaceae
 FR870443, Aeromonas hydrophila subsp. anaerogenes, Aeromonadaceae

Succinivibrionaceae (6)
U96412, Anaerobiospirillum succiniciproducens, type sp., Succinivibrionaceae
Y17600, Succinivibrio dextrinosolvens, type sp., Succinivibrionaceae
AJ420985, Anaerobiospirillum thomasii, Succinivibrionaceae
AB490810, Succinatimonas hippei, type sp., Succinivibrionaceae
Y17599, Succinimonas amylolytica, type sp., Succinivibrionaceae
Y15992, Ruminobacter amylophilus, type sp., Succinivibrionaceae

X92889, Tolumonas auensis, type sp., Aeromonadaceae

GU370947, Tolumonas osonensis, Aeromonadaceae
DQ013306, Aeromonas sharmana, Aeromonadaceae
AJ009859, Aeromonas salmonicida subsp. smithia, Aeromonadaceae
FM999971, Aeromonas piscicola, Aeromonadaceae
AB027542, Aeromonas salmonicida subsp. masoucida, Aeromonadaceae
X60407, Aeromonas salmonicida subsp. achromogenes, Aeromonadaceae
X60406, Aeromonas bestiarum, Aeromonadaceae
AY987751, Aeromonas salmonicida subsp. salmonicida, Aeromonadaceae
AF134065, Aeromonas salmonicida subsp. pectinolytica, Aeromonadaceae
AY532690, Aeromonas molluscorum, Aeromonadaceae
FJ976900, Aeromonas rivuli, Aeromonadaceae
AJ224309, Aeromonas encheleia, Aeromonadaceae
AJ224308, Aeromonas popoffii, Aeromonadaceae
X60412, Aeromonas sobria, Aeromonadaceae
DQ504429, Aeromonas bivalvium, Aeromonadaceae
X60411, Aeromonas eucrenophila, Aeromonadaceae
AJ458402, Aeromonas tecta , Aeromonadaceae
X71120, Aeromonas ichthiosmia, Aeromonadaceae
X60414, Aeromonas veronii, Aeromonadaceae
FJ230078, Aeromonas fluvialis, Aeromonadaceae
X60413, Aeromonas jandaei, Aeromonadaceae
X60416, Aeromonas schubertii, Aeromonadaceae
GQ365710, Aeromonas diversa, Aeromonadaceae
AJ536821, Aeromonas simiae, Aeromonadaceae

Vibrionaceae (128)
AJ293802, Vibrio pelagius, Vibrionaceae
AJ514916, Vibrio fortis, Vibrionaceae
X99761, Vibrio mytili, Vibrionaceae
X99762, Vibrio diabolicus, Vibrionaceae
AB428897, Vibrio azureus, Vibrionaceae
AB428909, Vibrio sagamiensis, Vibrionaceae
AF388386, Vibrio parahaemolyticus, Vibrionaceae
X74714, Vibrio natriegens, Vibrionaceae
GU078672, Vibrio communis, Vibrionaceae
GU018180, Vibrio owensii, Vibrionaceae
AB562589, Vibrio jasicida, Vibrionaceae
AY750575, Vibrio harveyi, Vibrionaceae
AJ316187, Vibrio rotiferianus, Vibrionaceae
X56576, Vibrio alginolyticus, Vibrionaceae
X56575, Vibrio campbellii, Vibrionaceae
FJ009624, Vibrio atypicus, Vibrionaceae
X74723, Vibrio proteolyticus, Vibrionaceae
GQ397859, Vibrio xiamenensis, Vibrionaceae
X74716, Vibrio nereis, Vibrionaceae
GU929925, Vibrio maritimus, Vibrionaceae
GU929924, Vibrio variabilis, Vibrionaceae
X74717, Vibrio nigripulchritudo, Vibrionaceae
DQ451211, Vibrio sinaloensis, Vibrionaceae
AJ316172, Vibrio brasiliensis, Vibrionaceae
GU223601, Vibrio caribbeanicus, Vibrionaceae
AJ440005, Vibrio coralliilyticus, Vibrionaceae
AJ316171, Vibrio neptunius, Vibrionaceae
AJ345063, Vibrio hepatarius, Vibrionaceae
X74725, Vibrio tubiashii, Vibrionaceae
AJ316181, Vibrio xuii, Vibrionaceae
EF032499, Vibrio albensis, Vibrionaceae
X76337, Vibrio cholerae, type sp., Vibrionaceae
X74713, Vibrio mimicus, Vibrionaceae
EF488079, Vibrio porteresiae, Vibrionaceae
DQ847123, Vibrio rhizosphaerae, Vibrionaceae
AF462458, Vibrio ruber, Vibrionaceae
EU144014, Vibrio mangrovi, Vibrionaceae
X74705, Vibrio gazogenes, Vibrionaceae
X76335, Vibrio fluvialis, Vibrionaceae
X76336, Vibrio furnissii, Vibrionaceae
EU143360, Vibrio areninigrae, Vibrionaceae
AY254040, Vibrio hispanicus, Vibrionaceae
X74701, Vibrio diazotrophicus, Vibrionaceae
GQ352641, Vibrio plantisponsor, Vibrionaceae
X74698, Vibrio cincinnatiensis, Vibrionaceae
X74711, Vibrio metschnikovii, Vibrionaceae
AM235737, Vibrio anguillarum, Vibrionaceae
X74718, Vibrio ordalii, Vibrionaceae
X74715, Vibrio navarrensis, Vibrionaceae
X76333, Vibrio vulnificus, Vibrionaceae
X74689, Vibrio aestuarianus, Vibrionaceae
FJ968722, Vibrio casei, Vibrionaceae
DQ097523, Vibrio litoralis, Vibrionaceae
AB013297, Vibrio rumoiensis, Vibrionaceae
FJ847833, Vibrio marisflavi, Vibrionaceae
AJ421444, Vibrio penaeicida, Vibrionaceae
Y08430, Vibrio tapetis, Vibrionaceae
Y13830, Vibrio pectenicida, Vibrionaceae
AM162657, Vibrio kanaloae, Vibrionaceae
AJ515230, Vibrio splendidus, Vibrionaceae
AM162656, Vibrio cyclitrophicus, Vibrionaceae
EU541605, Vibrio gallaecicus, Vibrionaceae
AJ278881, Vibrio lentus, Vibrionaceae
AJ316192, Vibrio tasmaniensis, Vibrionaceae
EF599163, Vibrio atlanticus, Vibrionaceae
EF599164, Vibrio artabrorum, Vibrionaceae
EF599162, Vibrio celticus, Vibrionaceae
EF094888, Vibrio gigantis, Vibrionaceae
AJ316199, Vibrio chagasii, Vibrionaceae
EF094887, Vibrio crassostreae, Vibrionaceae
AJ491290, Vibrio pomeroyi, Vibrionaceae
AJ316194, Vibrio pacinii, Vibrionaceae
X74710, Vibrio mediterranei, Vibrionaceae
X74719, Vibrio orientalis, Vibrionaceae
AJ630103, Vibrio ponticus, Vibrionaceae
AJ437616, Aliivibrio logei, Vibrionaceae
X70643, Aliivibrio salmonicida, Vibrionaceae
 AB464964, Aliivibrio sifiae, Vibrionaceae
AJ132227, Aliivibrio wodanis, Vibrionaceae
EU541604, Aliivibrio finisterrensis, Vibrionaceae
X74702, Aliivibrio fischeri, type sp., Vibrionaceae
AY257972, Vibrio gallicus, Vibrionaceae
AY155585, Vibrio superstes, Vibrionaceae
DQ922915, Vibrio comitans, Vibrionaceae
DQ922920, Vibrio inusitatus, Vibrionaceae
DQ914239, Vibrio rarus, Vibrionaceae
EF599161, Vibrio breoganii, Vibrionaceae
AY426980, Vibrio ezurae, Vibrionaceae
AY426979, Vibrio neonatus, Vibrionaceae
AB000390, Vibrio halioticoli, Vibrionaceae
AJ310647, Vibrio agarivorans, Vibrionaceae
EU082035, Vibrio hangzhouensis, Vibrionaceae
AJ421445, Vibrio ichthyoenteri, Vibrionaceae
U46579, Vibrio scophthalmi, Vibrionaceae
FN421434, Vibrio hippocampi, Vibrionaceae
GQ281380, Vibrio stylophorae, Vibrionaceae
X74699, Salinivibrio costicola subsp. costicola, type sp., Vibrionaceae
AJ640132, Salinivibrio costicola subsp. alcaliphilus, Vibrionaceae
AM279734, Salinivibrio sharmensis, Vibrionaceae
AB285018, Salinivibrio siamensis, Vibrionaceae
AF057016, Salinivibrio costicola subsp. vallismortis, Vibrionaceae
DQ092443, Salinivibrio proteolyticus, Vibrionaceae
AF118021, Enterovibrio calviensis, Vibrionaceae
AM942722, Enterovibrio nigricans, Vibrionaceae
AJ842343, Enterovibrio coralii, Vibrionaceae
AJ514909, Grimontia hollisae, type sp., Vibrionaceae
AJ316208, Enterovibrio norvegicus, type sp., Vibrionaceae
AY551089, Photobacterium halotolerans, Vibrionaceae
FN796493, Photobacterium aphoticum, Vibrionaceae
AY960847, Photobacterium ganghwense, Vibrionaceae
D25307, Photobacterium angustum, Vibrionaceae
D25310, Photobacterium phosphoreum, type sp., Vibrionaceae
AB428873, Photobacterium aquimaris, Vibrionaceae
AY643710, Photobacterium iliopiscarium, Vibrionaceae
AY341439, Photobacterium kishitanii, Vibrionaceae
AY781193, Photobacterium aplysiae, Vibrionaceae
AY554009, Photobacterium lipolyticum, Vibrionaceae
D21226, Photobacterium profundum, Vibrionaceae
AB016982, Photobacterium indicum, Vibrionaceae
AY538749, Photobacterium frigidiphilum, Vibrionaceae
GQ386822, Photobacterium swingsii, Vibrionaceae
GU065210, Photobacterium jeanii, Vibrionaceae
DQ534014, Photobacterium lutimaris, Vibrionaceae
AJ842344, Photobacterium rosenbergii, Vibrionaceae
GQ260188, Photobacterium gaetbulicola, Vibrionaceae
X78105, Photobacterium damselae subsp. piscicida, Vibrionaceae
AB032015, Photobacterium damselae subsp. damselae, Vibrionaceae
X74686, Photobacterium leiognathi, Vibrionaceae

AF168367, Oceanimonas baumannii, Aeromonadaceae

AY538714, Oceanimonas smirnovii, Aeromonadaceae
AB019390, Oceanimonas doudoroffii, type sp., Aeromonadaceae
DQ195675, Zobellella denitrificans, type sp., Aeromonadaceae
HM475140, Zobellella aerophila, Aeromonadaceae
DQ195676, Zobellella taiwanensis, Aeromonadaceae
DQ190441, Oceanisphaera donghaensis, Aeromonadaceae
HQ171441, Oceanisphaera sediminis, Aeromonadaceae
FN377705, Oceanisphaera arctica, Aeromonadaceae
AJ550470, Oceanisphaera litoralis, type sp., Aeromonadaceae
HQ340607, Oceanisphaera ostreae, Aeromonadaceae
FM955224, Gallaecimonas pentaromativorans, type sp., Unclassified Gammaproteobacteria

Colwelliaceae (17)
U85846, Colwellia psychrotropica, Colwelliaceae
U14581, Colwellia rossensis, Colwelliaceae
AB002630, Colwellia maris, Colwelliaceae
AB094412, Colwellia piezophila, Colwelliaceae
AB011364, Colwellia psychrerythraea, type sp., Colwelliaceae
DQ055844, Colwellia aestuarii, Colwelliaceae
FJ889599, Colwellia chukchiensis, Colwelliaceae
DQ007434, Colwellia polaris, Colwelliaceae
EU599214, Colwellia asteriadis, Colwelliaceae
U85845, Colwellia demingiae, Colwelliaceae
AB369380, Thalassomonas actiniarum, Colwelliaceae
AJ294747, Thalassomonas viridans, type sp., Colwelliaceae
AB369381, Thalassomonas haliotis, Colwelliaceae
AY194066, Thalassomonas ganghwensis, Colwelliaceae
DQ212914, Thalassomonas agarivorans, Colwelliaceae
AY643537, Thalassomonas loyana, Colwelliaceae
HM237288, Thalassomonas agariperforans, Colwelliaceae

AB076561, Agarivorans albus, type sp., Alteromonadaceae

GQ200591, Agarivorans gilvus, Alteromonadaceae
FJ167390, Aliagarivorans marinus, type sp., Alteromonadaceae
FJ167391, Aliagarivorans taiwanensis, Alteromonadaceae
DQ913890, Celerinatantimonas diazotrophica, type sp., Celerinatantimonadaceae

Idiomarinaceae (21)
EU723884, Idiomarina maris, Idiomarinaceae
HQ537484, Aliidiomarina taiwanensis, type sp., Idiomarinaceae
GU471247, Idiomarina xiamenensis, Idiomarinaceae
FJ768737, Idiomarina aestuarii, Idiomarinaceae
EF212001, Idiomarina sediminum, Idiomarinaceae
DQ118948, Idiomarina taiwanensis, Idiomarinaceae
EF486355, Pseudidiomarina salinarum, Idiomarinaceae
EU600204, Idiomarina donghaiensis, Idiomarinaceae
EU423908, Idiomarina marina, Idiomarinaceae
EU423907, Idiomarina tainanensis, Idiomarinaceae
EU600203, Idiomarina maritima, Idiomarinaceae
DQ342238, Pseudidiomarina homiensis, Idiomarinaceae
FJ906745, Idiomarina aquimaris, Idiomarinaceae
FM877003, Idiomarina insulisalsae, Idiomarinaceae
AJ440214, Idiomarina baltica, Idiomarinaceae
AY526861, Idiomarina fontislapidosi, Idiomarinaceae
AY635468, Idiomarina seosinensis, Idiomarinaceae
AF052741, Idiomarina zobellii, Idiomarinaceae
AF288370, Idiomarina loihiensis, Idiomarinaceae
AY526862, Idiomarina ramblicola, Idiomarinaceae
AF052740, Idiomarina abyssalis, type sp., Idiomarinaceae

Psychromonadaceae (14)
AB374544, Psychromonas agarivorans, Psychromonadaceae
 AB365352, Psychromonas heitensis, Psychromonadaceae
AB094413, Psychromonas hadalis, Psychromonadaceae
AJ416756, Psychromonas profunda, Psychromonadaceae
AB052160, Psychromonas kaikoae, Psychromonadaceae
AB023378, Psychromonas marina, Psychromonadaceae
AF374385, Psychromonas arctica, Psychromonadaceae
AB304805, Psychromonas aquimarina, Psychromonadaceae
AB304806, Psychromonas macrocephali, Psychromonadaceae
AB304808, Psychromonas ossibalaenae, Psychromonadaceae
AB304804, Psychromonas japonica, Psychromonadaceae
FJ822615, Psychromonas boydii, Psychromonadaceae
U73721, Psychromonas ingrahamii, Psychromonadaceae
Y14697, Psychromonas antarctica, type sp., Psychromonadaceae

Pseudoalteromonadaceae (37)
X98336, Pseudoalteromonas antarctica, Pseudoalteromonadaceae
AY040230, Pseudoalteromonas translucida, Pseudoalteromonadaceae
AY387858, Pseudoalteromonas aliena, Pseudoalteromonadaceae
AY563031, Pseudoalteromonas marina, Pseudoalteromonadaceae
X82140, Pseudoalteromonas undina, Pseudoalteromonadaceae
X67024, Pseudoalteromonas haloplanktis, type sp., Pseudoalteromonadaceae
X82146, Pseudoalteromonas nigrifaciens, Pseudoalteromonadaceae
DQ787199, Pseudoalteromonas arctica, Pseudoalteromonadaceae
AF082562, Pseudoalteromonas elyakovii, Pseudoalteromonadaceae
AY040229, Pseudoalteromonas paragorgicola, Pseudoalteromonadaceae
AF082564, Pseudoalteromonas distincta, Pseudoalteromonadaceae
AJ417594, Pseudoalteromonas agarivorans, Pseudoalteromonadaceae
X82134, Pseudoalteromonas atlantica, Pseudoalteromonadaceae
X82143, Pseudoalteromonas espejiana, Pseudoalteromonadaceae
X82136, Pseudoalteromonas carrageenovora, Pseudoalteromonadaceae
AF316144, Pseudoalteromonas issachenkonii, Pseudoalteromonadaceae
AF214730, Pseudoalteromonas tetraodonis, Pseudoalteromonadaceae
AJ507251, Pseudoalteromonas mariniglutinosa, Pseudoalteromonadaceae
U85855, Pseudoalteromonas prydzensis, Pseudoalteromonadaceae
FJ754319, Pseudoalteromonas donghaensis, Pseudoalteromonadaceae
FJ404721, Pseudoalteromonas lipolytica, Pseudoalteromonadaceae
AF297958, Pseudoalteromonas flavipulchra, Pseudoalteromonadaceae
AF144036, Pseudoalteromonas maricaloris, Pseudoalteromonadaceae
Z25522, Pseudoalteromonas tunicata , Pseudoalteromonadaceae
AF172987, Pseudoalteromonas ulvae, Pseudoalteromonadaceae
AB090232, Pseudoalteromonas piscicida, Pseudoalteromonadaceae
AF007286, Pseudoalteromonas peptidolytica, Pseudoalteromonadaceae
X82147, Pseudoalteromonas rubra, Pseudoalteromonadaceae
X82135, Pseudoalteromonas aurantia, Pseudoalteromonadaceae
X82137, Pseudoalteromonas citrea, Pseudoalteromonadaceae
X82138, Pseudoalteromonas denitrificans, Pseudoalteromonadaceae
AF332880, Pseudoalteromonas phenolica, Pseudoalteromonadaceae
AY769918, Pseudoalteromonas spongiae, Pseudoalteromonadaceae
X82144, Pseudoalteromonas luteoviolacea, Pseudoalteromonadaceae
DQ011289, Pseudoalteromonas byunsanensis, Pseudoalteromonadaceae
AF316891, Pseudoalteromonas ruthenica, Pseudoalteromonadaceae
AB545807, Psychrosphaera saromensis, type sp., Pseudoalteromonadaceae

Moritellaceae (8)
AJ252022, Moritella abyssi, Moritellaceae
EF192283, Moritella dasanensis, Moritellaceae
AJ252023, Moritella profunda, Moritellaceae
AJ132226, Moritella viscosa, Moritellaceae
AB008797, Moritella yayanosii, Moritellaceae
D21224, Moritella japonica, Moritellaceae
AB038033, Moritella marina, type sp., Moritellaceae
AB364966, Paramoritella alkaliphila, type sp., Moritellaceae

Shewanellaceae (59)
AY579751, Shewanella halifaxensis, Shewanellaceae
CP000851, Shewanella pealeana, Shewanellaceae
AB081757, Shewanella marinintestina, Shewanellaceae
AB081762, Shewanella sairae, Shewanellaceae
AB204519, Shewanella pneumatophori, Shewanellaceae
AF420312, Shewanella fidelis, Shewanellaceae
AB081760, Shewanella schlegeliana, Shewanellaceae
AB094598, Shewanella kaireitica, Shewanellaceae
AJ551089, Shewanella psychrophila, Shewanellaceae
AJ551090, Shewanella piezotolerans, Shewanellaceae
D21225, Shewanella violacea, Shewanellaceae
X82131, Shewanella benthica, Shewanellaceae
AB201475, Shewanella abyssi, Shewanellaceae
U85907, Shewanella gelidimarina, Shewanellaceae
AB094597, Shewanella surugensis, Shewanellaceae
AY579749, Shewanella canadensis, Shewanellaceae
FR733715, Shewanella sediminis, Shewanellaceae
CP000821, Shewanella sediminis, Shewanellaceae
X82132, Shewanella hanedai, Shewanellaceae
CP000961, Shewanella woodyi, Shewanellaceae
AY579752, Shewanella atlantica, Shewanellaceae
AY485225, Shewanella aquimarina, Shewanellaceae
DQ286387, Shewanella loihica, Shewanellaceae
AY485224, Shewanella marisflavi, Shewanellaceae
AB205570, Shewanella algidipiscicola, Shewanellaceae
AY653177, Shewanella colwelliana, Shewanellaceae
AY170366, Shewanella waksmanii, Shewanellaceae
AF005249, Shewanella algae, Shewanellaceae
GQ260190, Shewanella upenei, Shewanellaceae
HM016084, Shewanella indica, Shewanellaceae
FM203122, Shewanella fodinae, Shewanellaceae
GQ245918, Shewanella dokdonensis, Shewanellaceae
FM210033, Shewanella chilikensis, Shewanellaceae
EF178282, Shewanella haliotis, Shewanellaceae
FJ041083, Shewanella corallii, Shewanellaceae
AF005248, Shewanella amazonensis, Shewanellaceae
EU290154, Shewanella marina, Shewanellaceae
AY326275, Shewanella donghaensis, Shewanellaceae
AF295592, Shewanella olleyana, Shewanellaceae
AF500075, Shewanella pacifica, Shewanellaceae
AF145921, Shewanella japonica, Shewanellaceae
AB205571, Shewanella glacialipiscicola, Shewanellaceae
AB205576, Shewanella morhuae, Shewanellaceae
AJ000214, Shewanella baltica, Shewanellaceae
AF005251, Shewanella oneidensis, Shewanellaceae
FR733713, Shewanella profunda, Shewanellaceae
X81623, Shewanella putrefaciens, type sp., Shewanellaceae
FJ589031, Shewanella xiamenensis, Shewanellaceae
AJ609571, Shewanella decolorationis, Shewanellaceae
 AB205566, Shewanella hafniensis, Shewanellaceae
AJ300834, Shewanella livingstonensis, Shewanellaceae
AM980877, Shewanella vesiculosa, Shewanellaceae
U85903, Shewanella frigidimarina, Shewanellaceae
GU564402, Shewanella arctica, Shewanellaceae
EU143361, Shewanella basaltis, Shewanellaceae
AJ311964, Shewanella denitrificans, Shewanellaceae
AY190533, Shewanella gaetbuli, Shewanellaceae
DQ180743, Shewanella irciniae, Shewanellaceae
DQ167234, Shewanella spongiae, Shewanellaceae

AB252732, Paraferrimonas sedimenticola, type sp., Ferrimonadaceae

Ferrimonadaceae (5)
X93021, Ferrimonas balearica, type sp., Ferrimonadaceae
AB193751, Ferrimonas marina, Ferrimonadaceae
DQ778094, Ferrimonas senticii, Ferrimonadaceae
AB245515, Ferrimonas futtsuensis, Ferrimonadaceae
AB245514, Ferrimonas kyonanensis, Ferrimonadaceae

D89929, Algicola bacteriolytica, type sp., Pseudoalteromonadaceae

AB063324, Algicola sagamiensis, Pseudoalteromonadaceae
GQ168584, Rheinheimera aquatica, Chromatiaceae
AY701891, Rheinheimera texasensis, Chromatiaceae
DQ874340, Rheinheimera tangshanensis, Chromatiaceae
EF575565, Rheinheimera soli, Chromatiaceae
DQ298025, Rheinheimera chironomi, Chromatiaceae
EF076757, Rheinheimera aquimaris, Chromatiaceae
AJ441080, Rheinheimera baltica, type sp., Chromatiaceae
FJ169968, Rheinheimera nanhaiensis, Chromatiaceae
AB073132, Rheinheimera pacifica, Chromatiaceae
EF660759, Alishewanella aestuarii, Alteromonadaceae
EU817498, Alishewanella jeotgali, Alteromonadaceae
AF144407, Alishewanella fetalis, type sp., Alteromonadaceae
EU909459, Alishewanella agri, Alteromonadaceae
GQ505294, Alishewanella tabrizica, Alteromonadaceae
AM183347, Rheinheimera perlucida, Chromatiaceae
AF250323, Alkalimonas amylolytica, type sp., Unclassified Gammaproteobacteria
X92130, Alkalimonas delamerensis, Unclassified Gammaproteobacteria
AB270706, Alkalimonas collagenimarina, Unclassified Gammaproteobacteria
GQ262000, Catenovulum agarivorans, type sp., Alteromonadaceae

Alteromonadaceae (26)
Y18228, Alteromonas macleodii, type sp., Alteromonadaceae
DQ836766, Alteromonas simiduii, Alteromonadaceae
AF529060, Alteromonas marina, Alteromonadaceae
DQ836765, Alteromonas tagae, Alteromonadaceae
AY428573, Alteromonas litorea, Alteromonadaceae
AY682202, Alteromonas addita, Alteromonadaceae
AJ295715, Alteromonas stellipolaris, Alteromonadaceae
AM885866, Alteromonas genovensis, Alteromonadaceae
AY926460, Alteromonas hispanica, Alteromonadaceae
DQ343294, Bowmanella denitrificans, type sp., Alteromonadaceae
EU440951, Bowmanella pacifica, Alteromonadaceae
AY553295, Salinimonas chungwhensis, type sp., Alteromonadaceae
FJ847832, Aestuariibacter aggregatus, Alteromonadaceae
AY207503, Aestuariibacter halophilus, Alteromonadaceae
AY207502, Aestuariibacter salexigens, type sp., Alteromonadaceae
AB473549, Aestuariibacter litoralis, Alteromonadaceae
EU183316, Glaciecola lipolytica, Alteromonadaceae
AY787042, Glaciecola nitratireducens, Alteromonadaceae
U85854, Glaciecola pallidula, Alteromonadaceae
DQ784575, Glaciecola agarilytica, Alteromonadaceae
AB247623, Glaciecola chathamensis, Alteromonadaceae
AJ293820, Glaciecola polaris, Alteromonadaceae
AJ488501, Glaciecola mesophila, Alteromonadaceae
DQ007436, Glaciecola psychrophila, Alteromonadaceae
EU365479, Glaciecola arctica, Alteromonadaceae
U85853, Glaciecola punicea, type sp., Alteromonadaceae

JF330773, Methylophaga lonarensis, Piscirickettsiaceae

AY694421, Methylophaga muralis, Piscirickettsiaceae
AF384373, Methylophaga alcalica, Piscirickettsiaceae
DQ660915, Methylophaga thiooxydans, Piscirickettsiaceae
X95461, Methylophaga sulfidovorans, Piscirickettsiaceae
DQ463161, Methylophaga aminisulfidivorans, Piscirickettsiaceae
X95460, Methylophaga thalassica, Piscirickettsiaceae
X95459, Methylophaga marina, type sp., Piscirickettsiaceae
L34955, Cycloclasticus pugetii, type sp., Piscirickettsiaceae
EF495157, Methylomicrobium alcaliphilum, Methylococcaceae
AF307138, Methylomicrobium buryatense, Methylococcaceae
D89279, Methylomicrobium japanense, Methylococcaceae
AJ132384, Methylomicrobium kenyense, Methylococcaceae
X72775, Methylomicrobium pelagicum, Methylococcaceae
X72767, Methylomicrobium agile, type sp., Methylococcaceae
X72777, Methylomicrobium album, Methylococcaceae
X72773, Methylobacter whittenburyi, Methylococcaceae
HQ676599, Methylococcus mobilis, Methylococcaceae
AF177297, Methylosarcina quisquiliarum, Methylococcaceae
AF177296, Methylosarcina fibrata, type sp., Methylococcaceae
AY007296, Methylosarcina lacus, Methylococcaceae
AF304195, Methylobacter luteus, type sp., Methylococcaceae
AF304197, Methylobacter marinus, Methylococcaceae
X72776, Methylomonas aurantiaca, Methylococcaceae
X72778, Methylomonas fodinarum, Methylococcaceae
AB538964, Methylomonas koyamae, Methylococcaceae
AJ131369, Methylomonas scandinavica, Methylococcaceae
AF304196, Methylomonas methanica, type sp., Methylococcaceae
AF152597, Methylobacter psychrophilus, Methylococcaceae
AJ414655, Methylobacter tundripaludum, Methylococcaceae
DQ119050, Methylosoma difficile, type sp., Methylococcaceae
AB501287, Methylovulum miyakonense, type sp., Methylococcaceae
U67929, Methylosphaera hansonii, type sp., Methylococcaceae
AJ404731, Thiomicrospira arctica, Piscirickettsiaceae
AJ404732, Thiomicrospira psychrophila, Piscirickettsiaceae
AF013975, Thiomicrospira chilensis, Piscirickettsiaceae
AF013974, Thiomicrospira frisia, Piscirickettsiaceae
L40810, Thiomicrospira crunogena, Piscirickettsiaceae
AB166731, Thiomicrospira thermophila, Piscirickettsiaceae
DQ390450, Thiomicrospira halophila, Piscirickettsiaceae
D86374, Hydrogenovibrio marinus, type sp., Piscirickettsiaceae
AF013978, Thiomicrospira kuenenii, Piscirickettsiaceae
AF126548, Thioalkalimicrobium aerophilum, type sp., Piscirickettsiaceae
AF126549, Thioalkalimicrobium sibiricum, Piscirickettsiaceae
AF329082, Thioalkalimicrobium cyclicum, Piscirickettsiaceae
DQ900623, Thioalkalimicrobium microaerophilum, Piscirickettsiaceae
 L40809, Thiomicrospira pelophila, type sp., Piscirickettsiaceae
AF016046, Thiomicrospira thyasirae, Piscirickettsiaceae
AB495251, Cocleimonas flava, type sp., Thiotrichaceae
X87277, Leucothrix mucor, type sp., Thiotrichaceae
AF432145, Sedimenticola selenatireducens, type sp., Unclassified Gammaproteobacteria

Halomonadaceae (94)
AF212202, Halomonas neptunia, Halomonadaceae
FN433898, Halomonas titanicae, Halomonadaceae
AJ564880, Halomonas alkaliantarctica, Halomonadaceae
AY245449, Halomonas boliviensis, Halomonadaceae
AJ306893, Halomonas variabilis, Halomonadaceae
FJ429198, Halomonas zhanjiangensis, Halomonadaceae
AF212204, Halomonas sulfidaeris, Halomonadaceae
AM229315, Halomonas janggokensis, Halomonadaceae
EF144148, Halomonas subterranea, Halomonadaceae
EF144147, Halomonas arcis, Halomonadaceae
AM229314, Halomonas gomseomensis, Halomonadaceae
EU557315, Halomonas vilamensis, Halomonadaceae
AM941388, Halomonas stevensii, Halomonadaceae
AM941396, Halomonas hamiltonii, Halomonadaceae
X92150, Halomonas magadiensis, Halomonadaceae
AM941399, Halomonas johnsoniae, Halomonadaceae
AJ306888, Halomonas aquamarina, Halomonadaceae
AJ306891, Halomonas meridiana, Halomonadaceae
AF212206, Halomonas axialensis, Halomonadaceae
AJ640133, Halomonas alkaliphila, Halomonadaceae
AJ306894, Halomonas venusta, Halomonadaceae
AF212218, Halomonas hydrothermalis, Halomonadaceae
EF622233, Halomonas andesensis, Halomonadaceae
L42619, Halomonas halodurans, Halomonadaceae
EU909458, Halomonas jeotgali, Halomonadaceae
AJ306892, Halomonas subglaciescola, Halomonadaceae
AJ417388, Halomonas halocynthiae, Halomonadaceae
EU541349, Halomonas fontilapidosi, Halomonadaceae
EF613112, Halomonas cerina, Halomonadaceae
AB021386, Chromohalobacter beijerinckii, Halomonadaceae
AB105159, Chromohalobacter japonicus, Halomonadaceae
AJ295143, Chromohalobacter canadensis, Halomonadaceae
AY373448, Chromohalobacter sarecensis, Halomonadaceae
AJ277205, Chromohalobacter nigrandesensis, Halomonadaceae
X87219, Chromohalobacter marismortui, type sp., Halomonadaceae
AJ295144, Chromohalobacter israelensis, Halomonadaceae
CP000285, Chromohalobacter salexigens , Halomonadaceae
DQ280368, Halomonas kribbensis, Halomonadaceae
HM026177, Halomonas rifensis, Halomonadaceae
EF674852, Halomonas lutea, Halomonadaceae
EF421176, Halomonas xianhensis, Halomonadaceae
AJ320530, Halomonas muralis, Halomonadaceae
EU218533, Halomonas ilicicola, Halomonadaceae
X93493, Halomonas pantelleriensis, Halomonadaceae
EU085033, Halomonas korlensis, Halomonadaceae
FJ984862, Halomonas daqiaonensis, Halomonadaceae
DQ421808, Halomonas gudaonensis, Halomonadaceae
FJ418176, Aidingimonas halophila, type sp., Halomonadaceae
DQ641495, Modicisalibacter tunisiensis, type sp., Halomonadaceae
EF121854, Halomonas daqingensis, Halomonadaceae
X92417, Halomonas desiderata, Halomonadaceae
AY962237, Halomonas kenyensis, Halomonadaceae
AF054286, Halomonas campisalis, Halomonadaceae
AJ515365, Halomonas campaniensis, Halomonadaceae
AY962236, Halomonas mongoliensis, Halomonadaceae
EF121853, Halomonas shengliensis, Halomonadaceae
AF211860, Halomonas alimentaria, Halomonadaceae
L04942, Halomonas halodenitrificans, Halomonadaceae
AY268080, Halomonas ventosae, Halomonadaceae
EF527874, Halomonas caseinilytica, Halomonadaceae
AM238662, Halomonas sinaiensis, Halomonadaceae
X67023, Halomonas elongata, type sp., Halomonadaceae
X87218, Halomonas eurihalina, Halomonadaceae
AJ306889, Halomonas halmophila, Halomonadaceae
EF442769, Halomonas sabkhae, Halomonadaceae
AY858696, Halomonas almeriensis, Halomonadaceae
L42615, Halomonas cupida, Halomonadaceae
AM229317, Halomonas denitrificans, Halomonadaceae
EF144149, Halomonas saccharevitans, Halomonadaceae
AJ271864, Halomonas maura, Halomonadaceae
EF613113, Halomonas nitroreducens, Halomonadaceae
HM242216, Halomonas stenophila, Halomonadaceae
AM941744, Halomonas halophila, Halomonadaceae
AJ295145, Halomonas salina, Halomonadaceae
AJ616910, Halomonas organivorans, Halomonadaceae
AY382579, Halomonas koreensis, Halomonadaceae
L42616, Halomonas pacifica, Halomonadaceae
EF527873, Halomonas salifodinae, Halomonadaceae
AJ427626, Salinicola halophilus, Halomonadaceae
AM229316, Salinicola salarius, Halomonadaceae
DQ979342, Salinicola socius, type sp., Halomonadaceae
AY489405, Halomonas anticariensis, Halomonadaceae
EU822512, Halomonas xinjiangensis, Halomonadaceae
AY671975, Halomonas taeanensis, Halomonadaceae
AM941746, Kushneria aurantia, type sp., Halomonadaceae
FJ667549, Kushneria sinocarnis, Halomonadaceae
DQ888315, Kushneria avicenniae, Halomonadaceae
AF251143, Kushneria marisflavi, Halomonadaceae
AJ427627, Kushneria indalinina, Halomonadaceae
AJ306890, Cobetia marina, type sp., Halomonadaceae
EU909460, Cobetia crustatorum , Halomonadaceae
DQ421388, Halotalea alkalilenta, type sp., Halomonadaceae
AF211871, Zymobacter palmae, type sp., Halomonadaceae
Y13299, Carnimonas nigrificans, type sp., Halomonadaceae

AB098510, Marinospirillum insulare, Oceanospirillaceae

AB006770, Marinospirillum megaterium, Oceanospirillaceae
AB006769, Marinospirillum minutulum, type sp., Oceanospirillaceae
AF275713, Marinospirillum alkaliphilum, Oceanospirillaceae
EU375807, Marinospirillum celere, Oceanospirillaceae
AB006766, Pseudospirillum japonicum, type sp., Oceanospirillaceae
DQ403810, Reinekea blandensis, Oceanospirillaceae
GQ456131, Reinekea aestuarii, Oceanospirillaceae
AJ561121, Reinekea marinisedimentorum, type sp., Oceanospirillaceae

Saccharospirillaceae (3)
EF177670, Saccharospirillum salsuginis, Saccharospirillaceae
GQ250189, Saccharospirillum aestuarii, Saccharospirillaceae
 AJ315983, Saccharospirillum impatiens, type sp., Saccharospirillaceae

Litoricolaceae (2)
EF176580, Litoricola lipolytica, type sp., Litoricolaceae
FJ943234, Litoricola marina, Litoricolaceae

Oceanospirillaceae (38)
DQ492749, Marinomonas arctica, Oceanospirillaceae
AJ833000, Marinomonas polaris, Oceanospirillaceae
AB074193, Marinomonas primoryensis, Oceanospirillaceae
AJ627909, Marinomonas ushuaiensis, Oceanospirillaceae
EU188444, Marinomonas foliarum, Oceanospirillaceae
AY539835, Marinomonas pontica, Oceanospirillaceae
EU188442, Marinomonas alcarazii, Oceanospirillaceae
EU188443, Marinomonas rhizomae, Oceanospirillaceae
EU188447, Marinomonas aquiplantarum, Oceanospirillaceae
EU188445, Marinomonas posidonica, Oceanospirillaceae
DQ011526, Marinomonas dokdonensis, Oceanospirillaceae
AB467281, Marinomonas arenicola, Oceanospirillaceae
EU188441, Marinomonas pollencensis, Oceanospirillaceae
DQ011528, Marinomonas communis, type sp., Oceanospirillaceae
AB242868, Marinomonas ostreistagni, Oceanospirillaceae
AJ843077, Marinomonas aquimarina, Oceanospirillaceae
X67025, Marinomonas vaga, Oceanospirillaceae
GU929940, Marinomonas brasilensis, Oceanospirillaceae
AF063027, Marinomonas mediterranea, Oceanospirillaceae
EU188448, Marinomonas balearica, Oceanospirillaceae
AM747817, Oceaniserpentilla haliotis, Oceanospirillaceae
AM117931, Spongiispira norvegica, type sp., Unclassified Oceanospirillales
AY136131, Bermanella marisrubri, Oceanospirillaceae
AJ426420, Oleispira antarctica, type sp., Oceanospirillaceae
AB006767, Oceanobacter kriegii, type sp., Oceanospirillaceae
AB435649, Oleibacter marinus, type sp., Oceanospirillaceae
AJ431699, Thalassolituus oleivorans, type sp., Oceanospirillaceae
AB288092, Neptunomonas japonica, Oceanospirillaceae
AF053734, Neptunomonas naphthovorans, type sp., Oceanospirillaceae
FJ713802, Neptunomonas antarctica, Oceanospirillaceae
AB006760, Oceanospirillum beijerinckii, Oceanospirillaceae
AB006763, Oceanospirillum maris, Oceanospirillaceae
AB006764, Oceanospirillum multiglobuliferum, Oceanospirillaceae
AM156910, Amphritea atlantica, type sp., Oceanospirillaceae
AB330883, Amphritea balenae, Oceanospirillaceae
AB330881, Amphritea japonica, Oceanospirillaceae
AY136116, Neptuniibacter caesariensis, type sp., Oceanospirillaceae
GQ131677, Neptuniibacter halophilus, Oceanospirillaceae

U58339, Marinobacterium georgiense, type sp., Alteromonadaceae

AY563030, Marinobacterium halophilum, Alteromonadaceae
EU399548, Marinobacterium maritimum, Alteromonadaceae
AB021367, Marinobacterium stanieri, Alteromonadaceae
EU573966, Marinobacterium sediminicola, Alteromonadaceae
GU183820, Marinobacterium coralli, Alteromonadaceae
AB006765, Marinobacterium jannaschii, Alteromonadaceae
EF192391, Marinobacterium rhizophilum, Alteromonadaceae
AY567473, Nitrincola lacisaponensis, type sp., Oceanospirillaceae
DQ917760, Marinobacterium litorale, Alteromonadaceae
FJ230839, Marinobacterium lutimaris, Alteromonadaceae
EU573965, Marinobacterium nitratireducens, Alteromonadaceae
Y17112, Balneatrix alpica, type sp., Oceanospirillaceae
AJ295154, Oleiphilus messinensis, type sp., Oleiphilaceae
DQ060402, Marinobacter psychrophilus, Alteromonadaceae
FJ196022, Marinobacter antarcticus, Alteromonadaceae
AJ704395, Marinobacter maritimus, Alteromonadaceae
EF660754, Marinobacter goseongensis, Alteromonadaceae
AY147906, Marinobacter lipolyticus, Alteromonadaceae
AM503093, Marinobacter guineae, Alteromonadaceae
AY241552, Marinobacter adhaerens, Alteromonadaceae
AY517632, Marinobacter flavimaris, Alteromonadaceae
AY258110, Marinobacter algicola, Alteromonadaceae
EF028328, Marinobacter salsuginis, Alteromonadaceae
AJ609270, Marinobacter sediminum, Alteromonadaceae
AJ609271, Marinobacter bryozoorum, Alteromonadaceae
EF157832, Marinobacter segnicrescens, Alteromonadaceae
EU047505, Marinobacter lacisalsi, Alteromonadaceae
EF486354, Marinobacter salicampi, Alteromonadaceae
FJ984869, Marinobacter daqiaonensis, Alteromonadaceae
DQ414419, Marinobacter gudaonensis, Alteromonadaceae
AY180101, Marinobacter excellens, Alteromonadaceae
AF479689, Marinobacter litoralis, Alteromonadaceae
DQ235263, Marinobacter vinifirmus, Alteromonadaceae
AY517633, Marinobacter daepoensis, Alteromonadaceae
X67022, Marinobacter hydrocarbonoclasticus, type sp., Alteromonadaceae
FJ897726, Marinobacter oulmenensis, Alteromonadaceae
DQ325514, Marinobacter koreensis, Alteromonadaceae
EU496088, Marinobacter santoriniensis, Alteromonadaceae
DQ458821, Marinobacter pelagius, Alteromonadaceae
EU164778, Marinobacter szutsaonensis, Alteromonadaceae
EU293412, Marinobacter mobilis, Alteromonadaceae
EU293413, Marinobacter zhejiangensis, Alteromonadaceae
HQ203044, Marinobacter xestospongiae, Alteromonadaceae
AF288157, Marinobacter lutaoensis, Alteromonadaceae
DQ072719, Halospina denitrificans, type sp., Hahellaceae
DQ072718, Halovibrio denitrificans, Halomonadaceae
AB021383, Pseudomonas halophila, Pseudomonadaceae
DQ019934, Salicola marasensis, type sp., Unclassified Oceanospirillales
DQ129689, Salicola salis, Unclassified Oceanospirillales

Hahellaceae (4)
CP000155, Hahella chejuensis , type sp., Hahellaceae
AY676463, Hahella ganghwensis, Hahellaceae
EF495227, Hahella antarctica, Hahellaceae
AY130994, Zooshikella ganghwensis, type sp., Hahellaceae

AB196667, Endozoicomonas elysicola, type sp., Hahellaceae

FJ347758, Endozoicomonas montiporae, Hahellaceae
EU599216, Kistimonas asteriae, type sp., Hahellaceae

Pseudomonadaceae (149)
D84009, Pseudomonas azotoformans, Pseudomonadaceae
AJ936933, Pseudomonas simiae, Pseudomonadaceae
AF374472, Pseudomonas costantinii, Pseudomonadaceae
AJ581999, Pseudomonas lurida, Pseudomonadaceae
AJ492829, Pseudomonas poae, Pseudomonadaceae
AJ492831, Pseudomonas trivialis, Pseudomonadaceae
 AF405328, Pseudomonas extremorientalis, Pseudomonadaceae
AF255336, Pseudomonas tolaasii, Pseudomonadaceae
AY091527, Pseudomonas palleroniana, Pseudomonadaceae
AY091528, Pseudomonas salomonii, Pseudomonadaceae
AJ492830, Pseudomonas cedrina subsp. fulgida, Pseudomonadaceae
AF064461, Pseudomonas cedrina subsp. cedrina, Pseudomonadaceae
AF064457, Pseudomonas orientalis, Pseudomonadaceae
D84013, Pseudomonas fluorescens, Pseudomonadaceae
AJ537601, Pseudomonas antarctica, Pseudomonadaceae
AJ537602, Pseudomonas meridiana, Pseudomonadaceae
AJ583501, Pseudomonas extremaustralis, Pseudomonadaceae
AF268029, Pseudomonas grimontii, Pseudomonadaceae
AF268968, Pseudomonas brenneri, Pseudomonadaceae
AJ537603, Pseudomonas proteolytica, Pseudomonadaceae
AF074384, Pseudomonas gessardii, Pseudomonadaceae
AF064459, Pseudomonas rhodesiae, Pseudomonadaceae
D84017, Pseudomonas mucidolens, Pseudomonadaceae
D84025, Pseudomonas synxantha, Pseudomonadaceae
HQ223108, Thermoleophilum minutum, Thermoleophilaceae
AF057645, Pseudomonas libanensis, Pseudomonadaceae
Z76663, Pseudomonas marginalis, Pseudomonadaceae
AY787208, Pseudomonas panacis, Pseudomonadaceae
AF064460, Pseudomonas veronii, Pseudomonadaceae
Z76654, Pseudomonas amygdali, Pseudomonadaceae
AY180972, Pseudomonas viridiflava, Pseudomonadaceae
AB021378, Pseudomonas ficuserectae, Pseudomonadaceae
DQ318866, Pseudomonas syringae , Pseudomonadaceae
AJ492828, Pseudomonas congelans, Pseudomonadaceae
AJ492827, Pseudomonas cannabina, Pseudomonadaceae
AJ278812, Pseudomonas protegens, Pseudomonadaceae
FM208264, Pseudomonas saponiphila, Pseudomonadaceae
Z76658, Pseudomonas cichorii, Pseudomonadaceae
D84010, Pseudomonas caricapapayae, Pseudomonadaceae
AB021402, Pseudomonas savastanoi, Pseudomonadaceae
AJ492826, Pseudomonas tremae, Pseudomonadaceae
AJ249382, Pseudomonas frederiksbergensis, Pseudomonadaceae
AF058286, Pseudomonas mandelii, Pseudomonadaceae
D84012, Pseudomonas corrugata, Pseudomonadaceae
AJ292426, Pseudomonas kilonensis, Pseudomonadaceae
AF100321, Pseudomonas brassicacearum subsp. brassicacearum, Pseudomonadaceae
EU391388, Pseudomonas brassicacearum subsp. neoaurantiaca, Pseudomonadaceae
AF386080, Pseudomonas mediterranea, Pseudomonadaceae
AF100323, Pseudomonas thivervalensis, Pseudomonadaceae
AY035996, Pseudomonas lini, Pseudomonadaceae
AF074383, Pseudomonas migulae, Pseudomonadaceae
FN645213, Pseudomonas arsenicoxydans, Pseudomonadaceae
AF094733, Pseudomonas fragi, Pseudomonadaceae
AB041885, Pseudomonas psychrophila, Pseudomonadaceae
GU936597, Pseudomonas deceptionensis, Pseudomonadaceae
D84027, Pseudomonas taetrolens, Pseudomonadaceae
AB021395, Pseudomonas lundensis, Pseudomonadaceae
FJ168539, Pseudomonas chlororaphis subsp. piscium, Pseudomonadaceae
Z76673, Pseudomonas chlororaphis subsp. chlororaphis, Pseudomonadaceae
AY509898, Pseudomonas chlororaphis subsp. aureofaciens, Pseudomonadaceae
DQ682655, Pseudomonas chlororaphis subsp. aurantiaca, Pseudomonadaceae
AF468450, Pseudomonas umsongensis, Pseudomonadaceae
AM293566, Pseudomonas moorei, Pseudomonadaceae
AJ011507, Pseudomonas vancouverensis, Pseudomonadaceae
AM293567, Pseudomonas mohnii, Pseudomonadaceae
AF068259, Pseudomonas jessenii, Pseudomonadaceae
AM293565, Pseudomonas reinekei, Pseudomonadaceae
FM201274, Pseudomonas baetica, Pseudomonadaceae
Z76652, Pseudomonas agarici, Pseudomonadaceae
AY970952, Pseudomonas moraviensis, Pseudomonadaceae
AF468452, Pseudomonas koreensis, Pseudomonadaceae
Y11150, Pseudomonas graminis, Pseudomonadaceae
AY364537, Pseudomonas lutea, Pseudomonadaceae
AJ011504, Pseudomonas abietaniphila, Pseudomonadaceae
AY152673, Pseudomonas rhizosphaerae, Pseudomonadaceae
AB126621, Pseudomonas japonica, Pseudomonadaceae
AY970951, Pseudomonas vranovensis, Pseudomonadaceae
AB021397, Pseudomonas asplenii, Pseudomonadaceae
FJ483519, Pseudomonas fuscovaginae, Pseudomonadaceae
AF064458, Pseudomonas monteilii, Pseudomonadaceae
AB009457, Pseudomonas plecoglossicida, Pseudomonadaceae
EU103629, Pseudomonas taiwanensis, Pseudomonadaceae
AY907566, Pseudomonas entomophila, Pseudomonadaceae
AF072688, Pseudomonas mosselii, Pseudomonadaceae
D84004, Pseudomonas oryzihabitans, Pseudomonadaceae
D84020, Pseudomonas putida, Pseudomonadaceae
AB060137, Pseudomonas cremoricolorata, Pseudomonadaceae
AB046999, Pseudomonas parafulva, Pseudomonadaceae
AB046996, Pseudomonas fulva, Pseudomonadaceae
AB021380, Pseudomonas pertucinogena, Pseudomonadaceae
DQ088664, Pseudomonas xiamenensis, Pseudomonadaceae
GQ161991, Pseudomonas bauzanensis, Pseudomonadaceae
FN908483, Pseudomonas litoralis, Pseudomonadaceae
EU888911, Pseudomonas pelagia, Pseudomonadaceae
EU143352, Pseudomonas sabulinigri, Pseudomonadaceae
EU286805, Pseudomonas xinjiangensis, Pseudomonadaceae
AB125366, Pseudomonas pachastrellae, Pseudomonadaceae
EU046271, Pseudomonas duriflava, Pseudomonadaceae
D84002, Pseudomonas luteola, Pseudomonadaceae
AB175652, Azomonas agilis, type sp., Pseudomonadaceae
FM208263, Pseudomonas benzenivorans, Pseudomonadaceae
AB175655, Azotobacter armeniacus, Pseudomonadaceae
AB175656, Azotobacter salinestris, Pseudomonadaceae
AB175657, Azotobacter vinelandii, Pseudomonadaceae
AJ308318, Azorhizophilus paspali, type sp., Pseudomonadaceae
AB175651, Azotobacter nigricans subsp. nigricans, Pseudomonadaceae
AB189452, Pseudomonas azotifigens, Pseudomonadaceae
AF302795, Pseudomonas indica, Pseudomonadaceae
U26418, Pseudomonas balearica, Pseudomonadaceae
AJ311980, Pseudomonas thermotolerans, Pseudomonadaceae
AJ308319, Azotobacter beijerinckii, Pseudomonadaceae
AB175653, Azotobacter chroococcum, type sp., Pseudomonadaceae
Z76659, Pseudomonas citronellolis, Pseudomonadaceae
DQ339153, Pseudomonas delhiensis, Pseudomonadaceae
AF468448, Pseudomonas jinjuensis, Pseudomonadaceae
AF039489, Pseudomonas knackmussii, Pseudomonadaceae
AM088473, Pseudomonas nitroreducens, Pseudomonadaceae
EF424401, Pseudomonas panipatensis, Pseudomonadaceae
X06684, Pseudomonas aeruginosa, type sp., Pseudomonadaceae
Z76668, Pseudomonas resinovorans, Pseudomonadaceae
 AY953147, Pseudomonas otitidis, Pseudomonadaceae
D84018, Pseudomonas oleovorans subsp. oleovorans, Pseudomonadaceae
AJ575816, Pseudomonas psychrotolerans, Pseudomonadaceae
AF094748, Pseudomonas stutzeri, Pseudomonadaceae
AB176954, Pseudomonas xanthomarina, Pseudomonadaceae
DQ868767, Pseudomonas tuomuerensis, Pseudomonadaceae
GU269546, Serpens flexibilis, type sp., Pseudomonadaceae
EU620679, Pseudomonas caeni, Pseudomonadaceae
DQ842018, Pseudomonas oleovorans subsp. lubricantis, Pseudomonadaceae
Z76666, Pseudomonas pseudoalcaligenes, Pseudomonadaceae
AB030583, Pseudomonas alcaliphila, Pseudomonadaceae
AB453701, Pseudomonas toyotomiensis, Pseudomonadaceae
D84016, Pseudomonas mendocina, Pseudomonadaceae
D84006, Pseudomonas alcaligenes, Pseudomonadaceae
AY691188, Pseudomonas argentinensis, Pseudomonadaceae
D84023, Pseudomonas straminea, Pseudomonadaceae
FJ422810, Pseudomonas seleniipraecipitans, Pseudomonadaceae
U01916, Pseudomonas flavescens, Pseudomonadaceae
X99540, Pseudomonas anguilliseptica, Pseudomonadaceae
AM114534, Pseudomonas peli, Pseudomonadaceae
AM491810, Pseudomonas guineae, Pseudomonadaceae
EU791281, Pseudomonas cuatrocienegasensis, Pseudomonadaceae
DQ339144, Pseudomonas pohangensis, Pseudomonadaceae
FJ424813, Pseudomonas taeanensis, Pseudomonadaceae
FN429930, Pseudomonas composti, Pseudomonadaceae
AM114527, Pseudomonas borbori, Pseudomonadaceae
AB301071, Pseudomonas marincola, Pseudomonadaceae
AY770691, Pseudomonas segetis, Pseudomonadaceae
AB175654, Azomonas macrocytogenes, Pseudomonadaceae

AAOA01000004, Congregibacter litoralis, type sp., Unclassified Gammaproteobacteria

EU161717, Haliea rubra, Alteromonadaceae
FN398053, Haliea mediterranea, Alteromonadaceae
AM691086, Chromatocurvus halotolerans, type sp., Unclassified Gammaproteobacteria
AY576769, Haliea salexigens, type sp., Alteromonadaceae
AB602427, Halioglobus japonicus, type sp., Unclassified Gammaproteobacteria
AB602430, Halioglobus pacificus, Unclassified Gammaproteobacteria
FJ889619, Zhongshania antarctica, type sp., Unclassified Gammaproteobacteria
HQ199599, Spongiibacter borealis, Unclassified Gammaproteobacteria
FJ889678, Zhongshania guokunii, Unclassified Gammaproteobacteria
EF988653, Spongiibacter tropicus, Unclassified Gammaproteobacteria
AM117932, Spongiibacter marinus, type sp., Unclassified Gammaproteobacteria
AY771747, Dasania marina, type sp., Unclassified Pseudomonadales
AF055269, Saccharophagus degradans, type sp., Alteromonadaceae
AB467279, Umboniibacter marinipuniceus , type sp., Unclassified Gammaproteobacteria
FJ347760, Pseudoteredinibacter isoporae, type sp., Unclassified Alteromonadales
AB626730, Maricurvus nonylphenolicus, type sp., Unclassified Alteromonadales
AY576771, Eionea nigra, type sp., Unclassified Alteromonadales
DQ822530, Gilvimarinus chinensis, type sp., Unclassified Alteromonadales
AY028398, Teredinibacter turnerae, type sp., Unclassified Alteromonadales
EF468719, Porticoccus litoralis, Unclassified Gammaproteobacteria
AJ289164, Cellvibrio fibrivorans, Pseudomonadaceae
AJ493583, Cellvibrio ostraviensis, Pseudomonadaceae
AF448514, Cellvibrio fulvus, Pseudomonadaceae
AF448513, Cellvibrio vulgaris, Pseudomonadaceae
AF448515, Cellvibrio mixtus subsp. mixtus, type sp., Pseudomonadaceae
AF452103, Cellvibrio japonicus, Pseudomonadaceae
AJ289162, Cellvibrio gandavensis, Pseudomonadaceae
AY839870, Marinimicrobium agarilyticum, Alteromonadaceae
EU874388, Marinimicrobium locisalis, Alteromonadaceae
AY839869, Marinimicrobium koreense, type sp., Alteromonadaceae
AB158515, Microbulbifer agarilyticus, Alteromonadaceae
AF500006, Microbulbifer elongatus, Alteromonadaceae
GQ262813, Microbulbifer yueqingensis, Alteromonadaceae
AF479688, Microbulbifer salipaludis, Alteromonadaceae
U58338, Microbulbifer hydrolyticus, type sp., Alteromonadaceae
EF486352, Microbulbifer celer, Alteromonadaceae
AB500894, Microbulbifer chitinilyticus, Alteromonadaceae
EF674853, Microbulbifer halophilus, Alteromonadaceae
AB124836, Microbulbifer thermotolerans, Alteromonadaceae
AB266054, Microbulbifer epialgicus, Alteromonadaceae
AB167354, Microbulbifer variabilis, Alteromonadaceae
AY377986, Microbulbifer maritimus, Alteromonadaceae
EU365694, Microbulbifer donghaiensis, Alteromonadaceae
GQ262812, Microbulbifer marinus, Alteromonadaceae
AB500893, Microbulbifer okinawensis, Alteromonadaceae
EF617350, Simiduia agarivorans, type sp., Unclassified Gammaproteobacteria
GQ872422, Simiduia areninigrae, Unclassified Gammaproteobacteria

Alcanivoracaceae (7)
Y12579, Alcanivorax borkumensis, type sp., Alcanivoracaceae
AJ001150, Alcanivorax jadensis, Alcanivoracaceae
EU438901, Alcanivorax hongdengensis, Alcanivoracaceae
AF328762, Alcanivorax venustensis, Alcanivoracaceae
AY686709, Alcanivorax balearicus, Alcanivoracaceae
AY683537, Alcanivorax dieselolei, Alcanivoracaceae
DQ659451, Alcanivorax pacificus, Alcanivoracaceae

Francisellaceae (8)
EU683030, Francisella noatunensis subsp. orientalis, Francisellaceae
DQ295795, Francisella noatunensis subsp. noatunensis, Francisellaceae
JF290376, Francisella halioticida, Francisellaceae
AY928394, Francisella philomiragia, Francisellaceae
CP000915, Francisella tularensis subsp. mediasiatica, Francisellaceae
Z21931, Francisella tularensis subsp. tularensis, type sp., Francisellaceae
AY928396, Francisella tularensis subsp. novicida, Francisellaceae
FN252413, Francisella hispaniensis, Francisellaceae

M21292, Wolbachia persica, Anaplasmataceae

AY102612, Caedibacter taeniospiralis, type sp., Unclassified Thiotrichales
AB176554, Fangia hongkongensis, type sp., Unclassified Thiotrichales
U36941, Piscirickettsia salmonis, type sp., Piscirickettsiaceae
AB505051, Kangiella japonica, Alcanivoracaceae
GU339304, Kangiella spongicola, Alcanivoracaceae
HQ340606, Kangiella geojedonensis, Alcanivoracaceae
AY520560, Kangiella koreensis, type sp., Alcanivoracaceae
AY520561, Kangiella aquimarina, Alcanivoracaceae
AB500095, Marinicella litoralis, type sp., Unclassified Gammaproteobacteria
AB500096, Arenicella xantha, type sp., Unclassified Gammaproteobacteria

Legionellaceae (52)
Z32637, Legionella dumoffii, Legionellaceae
Z32639, Legionella gormanii, Legionellaceae
Z49720, Legionella cherrii, Legionellaceae
HQ398202, Legionella steelei, Legionellaceae
 Z49725, Legionella gratiana, Legionellaceae
Z49738, Legionella wadsworthii, Legionellaceae
Z32635, Legionella anisa, Legionellaceae
Z49731, Legionella parisiensis, Legionellaceae
Z49737, Legionella steigerwaltii, Legionellaceae
Z32644, Legionella tucsonensis, Legionellaceae
Z49721, Legionella cincinnatiensis, Legionellaceae
Z49734, Legionella sainthelensi, Legionellaceae
AY444740, Legionella longbeachae, Legionellaceae
X97364, Legionella lytica, Legionellaceae
X97359, Legionella rowbothamii, Legionellaceae
X97366, Legionella drancourtii, Legionellaceae
Z49732, Legionella quateirensis, Legionellaceae
Z49736, Legionella shakespearei, Legionellaceae
Z49729, Legionella moravica, Legionellaceae
Z49739, Legionella worsleiensis, Legionellaceae
X97363, Legionella fallonii, Legionellaceae
HQ287902, Legionella pneumophila subsp. fraseri, Legionellaceae
AF122885, Legionella pneumophila subsp. pascullei, Legionellaceae
AE017354, Legionella pneumophila subsp. pneumophila, type sp., Legionellaceae
AF122886, Legionella waltersii, Legionellaceae
AM747393, Legionella dresdenensis, Legionellaceae
AF424887, Legionella busanensis, Legionellaceae
AF122883, Legionella gresilensis, Legionellaceae
AF122884, Legionella beliardensis, Legionellaceae
AF227161, Legionella maceachernii, Legionellaceae
AF227162, Legionella micdadei, Legionellaceae
Z49727, Legionella lansingensis, Legionellaceae
Z32643, Legionella rubrilucens, Legionellaceae
DQ667196, Legionella taurinensis, Legionellaceae
Z32638, Legionella erythra, Legionellaceae
Z49723, Legionella geestiana, Legionellaceae
Z49733, Legionella quinlivanii, Legionellaceae
AB233209, Legionella impletisoli, Legionellaceae
AB233210, Legionella yabuuchiae, Legionellaceae
EU701006, Legionella nagasakiensis, Legionellaceae
Z32642, Legionella oakridgensis, Legionellaceae
Z32640, Legionella israelensis, Legionellaceae
Z49730, Legionella londiniensis, Legionellaceae
Z49716, Legionella adelaidensis, Legionellaceae
Z49717, Legionella birminghamensis, Legionellaceae
Z49726, Legionella jamestowniensis, Legionellaceae
Z32667, Legionella jordanis, Legionellaceae
Z49722, Legionella fairfieldensis, Legionellaceae
Z49728, Legionella nautarum, Legionellaceae
Z32636, Legionella brunensis, Legionellaceae
X97355, Legionella drozanskii, Legionellaceae
X73395, Legionella feeleii, Legionellaceae

AY359282, Aquicella lusitana, type sp., Coxiellaceae

AY359283, Aquicella siphonis, Coxiellaceae
GQ857549, Diplorickettsia massiliensis, type sp., Coxiellaceae

Thiotrichaceae (9)
GU269554, Thiothrix fructosivorans, Thiotrichaceae
EU642573, Thiothrix caldifontis, Thiotrichaceae
EU642572, Thiothrix lacustris, Thiotrichaceae
L79961, Thiothrix unzii, Thiotrichaceae
L40993, Thiothrix nivea, type sp., Thiotrichaceae
AB042545, Thiothrix flexilis, Thiotrichaceae
AF127020, Thiothrix defluvii, Thiotrichaceae
AB042532, Thiothrix disciformis, Thiotrichaceae
AB042819, Thiothrix eikelboomii, Thiotrichaceae

EU672873, Methylogaea oryzae, type sp., Methylococcaceae

Methylococcaceae (4)
U89298, Methylocaldum gracile, Methylococcaceae
U89300, Methylocaldum szegediense, type sp., Methylococcaceae
U89297, Methylocaldum tepidum, Methylococcaceae
AJ563935, Methylococcus capsulatus, type sp., Methylococcaceae

Betaproteobacteria (491)

Burkholderiales (348)

Comamonadaceae (92)
Y18616, Acidovorax defluvii, Comamonadaceae
HM027578, Acidovorax radicis, Comamonadaceae
AF078764, Acidovorax delafieldii, Comamonadaceae
DQ327663, Verminephrobacter eiseniae, type sp., Comamonadaceae
FJ599672, Acidovorax soli, Comamonadaceae
AM084006, Acidovorax caeni, Comamonadaceae
AF078765, Acidovorax facilis, type sp., Comamonadaceae
AF078766, Acidovorax temperans, Comamonadaceae
AB064317, Diaphorobacter nitroreducens, type sp., Comamonadaceae
EU342381, Diaphorobacter oryzae, Comamonadaceae
AJ418042, Alicycliphilus denitrificans, type sp., Comamonadaceae
AJ007013, Acidovorax anthurii, Comamonadaceae
AJ431731, Acidovorax valerianellae, Comamonadaceae
AB074527, Giesbergeria anulus, Comamonadaceae
AY780907, Giesbergeria kuznetsovii, Comamonadaceae
AY780905, Giesbergeria voronezhensis, type sp., Comamonadaceae
AB074522, Giesbergeria giesbergeri, Comamonadaceae
AF078754, Giesbergeria sinuosa, Comamonadaceae
EF469609, Pseudacidovorax intermedius, type sp., Comamonadaceae
AF137505, Acidovorax avenae, Comamonadaceae
AF137504, Acidovorax cattleyae, Comamonadaceae
AF137506, Acidovorax citrulli, Comamonadaceae
DQ360414, Acidovorax oryzae, Comamonadaceae
AJ420325, Acidovorax konjaci, Comamonadaceae
AB187586, Comamonas granuli, Comamonadaceae
AF078753, Hylemonella gracilis, type sp., Comamonadaceae
AJ420330, Xylophilus ampelinus, type sp., Unclassified Burkholderiales
AB164432, Comamonas badia, Comamonadaceae
GQ245981, Comamonas zonglianii, Comamonadaceae
AF078772, Comamonas terrigena, type sp., Comamonadaceae
AJ430344, Comamonas aquatica, Comamonadaceae
AF233877, Comamonas denitrificans, Comamonadaceae
AJ251577, Comamonas nitrativorans, Comamonadaceae
AJ430347, Comamonas kerstersii, Comamonadaceae
DQ453128, Comamonas odontotermitis, Comamonadaceae
AF275377, Comamonas koreensis, Comamonadaceae
DQ322069, Comamonas thiooxydans, Comamonadaceae
M11224, Comamonas testosteroni, Comamonadaceae
 EF015884, Comamonas composti, Comamonadaceae
EU888308, Delftia lacustris, Comamonadaceae
AB075017, Delftia tsuruhatensis, Comamonadaceae
AB021417, Delftia acidovorans, type sp., Comamonadaceae
EU346912, Brachymonas chironomi, Comamonadaceae
D14320, Brachymonas denitrificans, Comamonadaceae
AB089485, Lampropedia hyalina, type sp., Comamonadaceae
AF285414, Xenophilus azovorans, type sp., Comamonadaceae
EF660342, Xenophilus aerolatus, Comamonadaceae
AF078755, Simplicispira psychrophila, Comamonadaceae
DQ372987, Simplicispira limi, Comamonadaceae
Y18618, Simplicispira metamorpha, type sp., Comamonadaceae
GU233447, Rhodoferax antarcticus, Comamonadaceae
D16211, Rhodoferax fermentans, type sp., Comamonadaceae
CP000267, Albidiferax ferrireducens, type sp., Comamonadaceae
EU825700, Pseudorhodoferax soli, type sp., Comamonadaceae
AJ606333, Pseudorhodoferax caeni, Comamonadaceae
FM178226, Limnohabitans australis, Comamonadaceae
AJ938026, Limnohabitans curvus, type sp., Comamonadaceae
FM165536, Limnohabitans parvus, Comamonadaceae
FM165535, Limnohabitans planktonicus, Comamonadaceae
DQ094183, Polaromonas hydrogenivorans, Comamonadaceae
AY166684, Polaromonas naphthalenivorans, Comamonadaceae
AM039830, Polaromonas aquatica, Comamonadaceae
U14585, Polaromonas vacuolata, type sp., Comamonadaceae
EU030285, Polaromonas jejuensis, Comamonadaceae
AB120963, Curvibacter fontanus, Comamonadaceae
AB109889, Curvibacter gracilis, type sp., Comamonadaceae
AB021390, Curvibacter lanceolatus, Comamonadaceae
AF078756, Curvibacter delicatus, Comamonadaceae
AB300597, Variovorax boronicumulans, Comamonadaceae
AJ420329, Variovorax paradoxus, type sp., Comamonadaceae
AB245358, Variovorax ginsengisoli, Comamonadaceae
DQ349098, Caenimonas koreensis, type sp., Comamonadaceae
EU518930, Ottowia pentelensis, Comamonadaceae
AJ537466, Ottowia thiooxydans, type sp., Comamonadaceae
AF439400, Ramlibacter henchirensis, Comamonadaceae
AF144383, Ramlibacter tataouinensis, type sp., Comamonadaceae
DQ178978, Variovorax dokdonensis, Comamonadaceae
HQ385753, Variovorax defluvii, Comamonadaceae
DQ432053, Variovorax soli, Comamonadaceae
DQ372983, Hydrogenophaga caeni, Comamonadaceae
AJ585992, Hydrogenophaga atypica, Comamonadaceae
AJ585993, Hydrogenophaga defluvii, Comamonadaceae
AF078769, Hydrogenophaga palleronii, Comamonadaceae
AF078768, Hydrogenophaga taeniospiralis, Comamonadaceae
AF019037, Hydrogenophaga intermedia, Comamonadaceae
EF532793, Hydrogenophaga bisanensis, Comamonadaceae
AF078770, Hydrogenophaga pseudoflava, Comamonadaceae
AF078771, Hydrogenophaga flava, type sp., Comamonadaceae
AJ627188, Malikia granosa, type sp., Comamonadaceae
AB077038, Malikia spinosa, Comamonadaceae
AB077037, Macromonas bipunctata, Comamonadaceae
DQ295805, Tepidicella xavieri, type sp., Comamonadaceae

AM042693, Tepidimonas thermarum, Unclassified Burkholderiales

AY845054, Tepidimonas taiwanensis, Unclassified Burkholderiales
AF177943, Tepidimonas ignava, type sp., Unclassified Burkholderiales
AY324139, Tepidimonas aquatica, Unclassified Burkholderiales
AB008801, Caldimonas manganoxidans, type sp., Comamonadaceae
AY845052, Caldimonas taiwanensis, Comamonadaceae
AM501435, Pelomonas aquatica, Comamonadaceae
AM501439, Pelomonas puraquae, Comamonadaceae
AB021407, Pelomonas saccharophila, type sp., Comamonadaceae
AY136099, Kinneretia asaccharophila, Comamonadaceae
AB006851, Mitsuaria chitosanitabida, type sp., Unclassified Burkholderiales
AY515390, Paucibacter toxinivorans, type sp., Unclassified Burkholderiales
AB003623, Roseateles depolymerans, type sp., Comamonadaceae
AM501445, Roseateles terrae, Comamonadaceae
AM501446, Roseateles aquatilis, Comamonadaceae
DQ664238, Inhella inkyongensis, type sp., Unclassified Burkholderiales
HM013811, Inhella fonticola, Unclassified Burkholderiales
HM037993, Vitreoscilla filiformis, Neisseriaceae
L33975, Leptothrix discophora, Unclassified Burkholderiales
GU591795, Sphaerotilus hippei, Unclassified Burkholderiales
EU636006, Sphaerotilus montanus, Unclassified Burkholderiales
FR749902, Sphaerotilus natans, type sp., Unclassified Burkholderiales
FJ871054, Sphaerotilus natans subsp. sulfidivorans, Unclassified Burkholderiales
X97071, Leptothrix mobilis, Unclassified Burkholderiales
DQ656489, Aquincola tertiaricarbonis, type sp., Unclassified Burkholderiales
AB188124, Azohydromonas australica, Alcaligenaceae
EU542576, Ideonella azotifigens, Unclassified Burkholderiales
X72724, Ideonella dechloratans, type sp., Unclassified Burkholderiales
AJ888903, Rubrivivax benzoatilyticus, Unclassified Burkholderiales
D16213, Rubrivivax gelatinosus, type sp., Unclassified Burkholderiales
AY455809, Thiomonas intermedia, type sp., Unclassified Burkholderiales
AY455808, Thiomonas perometabolis, Unclassified Burkholderiales
AM492684, Thiomonas arsenitoxydans, Unclassified Burkholderiales
DQ092334, Thiomonas bhubaneswarensis, Unclassified Burkholderiales
GU233443, Thiomonas thermosulfata, Unclassified Burkholderiales
AB245481, Thiomonas delicata, Unclassified Burkholderiales
EU625663, Thiomonas islandica, Unclassified Burkholderiales
AM774413, Rivibacter subsaxonicus, type sp., Unclassified Burkholderiales
AB245356, Rhizobacter fulvus, Pseudomonadaceae
AB297965, Rhizobacter dauci, type sp., Pseudomonadaceae
DQ664244, Piscinibacter aquaticus, type sp., Unclassified Burkholderiales
AF176594, Methylibium petroleiphilum, type sp., Unclassified Burkholderiales
AF035050, Aquabacterium citratiphilum, Unclassified Burkholderiales
AF035054, Aquabacterium commune, type sp., Unclassified Burkholderiales
GU319965, Aquabacterium limnoticum, Unclassified Burkholderiales
EF626687, Aquabacterium fontiphilum, Unclassified Burkholderiales
AF035052, Aquabacterium parvum, Unclassified Burkholderiales
AB188125, Azohydromonas lata, type sp., Alcaligenaceae
DQ417336, Schlegelella aquatica, Comamonadaceae
AY152824, Schlegelella thermodepolymerans, type sp., Comamonadaceae
AB366174, Limnobacter litoralis, Burkholderiaceae
AJ289885, Limnobacter thiooxidans, type sp., Burkholderiaceae

Burkholderiaceae (70)
AB495123, Burkholderia heleia, Burkholderiaceae
AY965240, Burkholderia silvatlantica, Burkholderiaceae
AY752958, Burkholderia mimosarum, Burkholderiaceae
DQ514537, Burkholderia ferrariae, Burkholderiaceae
AY773189, Burkholderia nodosa, Burkholderiaceae
AB561874, Burkholderia bannensis, Burkholderiaceae
 AJ420332, Burkholderia tropica, Burkholderiaceae
AY221956, Burkholderia unamae, Burkholderiaceae
AB488693, Burkholderia oxyphila, Burkholderiaceae
AF263278, Burkholderia sacchari, Burkholderiaceae
AB513180, Burkholderia acidipaludis, Burkholderiaceae
AB024310, Burkholderia kururiensis, Burkholderiaceae
AJ302311, Burkholderia tuberum, Burkholderiaceae
AY435213, Burkholderia phenoliruptrix, Burkholderiaceae
AJ302312, Burkholderia phymatum, Burkholderiaceae
AY773186, Burkholderia sabiae, Burkholderiaceae
Y17009, Burkholderia caribensis, Burkholderiaceae
AY040365, Burkholderia hospita, Burkholderiaceae
AB201285, Burkholderia terrae, Burkholderiaceae
AM489502, Burkholderia megapolitana, Burkholderiaceae
AM489501, Burkholderia bryophila, Burkholderiaceae
AF215704, Burkholderia caledonica, Burkholderiaceae
AB201286, Burkholderia ginsengisoli, Burkholderiaceae
U96939, Burkholderia graminis, Burkholderiaceae
AY040362, Burkholderia terricola, Burkholderiaceae
U86373, Burkholderia xenovorans, Burkholderiaceae
AY497470, Burkholderia phytofirmans, Burkholderiaceae
EU035613, Burkholderia sediminicola, Burkholderiaceae
AF215705, Burkholderia fungorum, Burkholderiaceae
U96936, Burkholderia phenazinium, Burkholderiaceae
AF061872, Burkholderia sartisoli, Burkholderiaceae
U96935, Burkholderia glathei, Burkholderiaceae
HM802212, Burkholderia zhejiangensis, Burkholderiaceae
AF512827, Burkholderia sordidicola, Burkholderiaceae
AB021423, Burkholderia caryophylli, Burkholderiaceae
DQ465451, Burkholderia soli, Burkholderiaceae
EU024168, Burkholderia gladioli, Burkholderiaceae
U96933, Burkholderia plantarii, Burkholderiaceae
U96931, Burkholderia glumae, Burkholderiaceae
Y18703, Burkholderia multivorans, Burkholderiaceae
AB030584, Burkholderia ubonensis, Burkholderiaceae
AF097534, Burkholderia vietnamiensis, Burkholderiaceae
AF148556, Burkholderia cenocepacia, Burkholderiaceae
AM747628, Burkholderia latens, Burkholderiaceae
U96927, Burkholderia cepacia, type sp., Burkholderiaceae
AM747631, Burkholderia seminalis, Burkholderiaceae
AM747632, Burkholderia metallica, Burkholderiaceae
AM747630, Burkholderia arboris, Burkholderiaceae
CP000150, Burkholderia lata, Burkholderiaceae
GQ397111, Burkholderia contaminans, Burkholderiaceae
AF043302, Burkholderia ambifaria, Burkholderiaceae
AM747629, Burkholderia diffusa, Burkholderiaceae
U96930, Burkholderia pyrrocinia, Burkholderiaceae
AF097533, Burkholderia stabilis, Burkholderiaceae
DQ108388, Burkholderia oklahomensis, Burkholderiaceae
AF110188, Burkholderia mallei, Burkholderiaceae
DQ108392, Burkholderia pseudomallei, Burkholderiaceae
U91838, Burkholderia thailandensis, Burkholderiaceae
AM420302, Burkholderia endofungorum, Burkholderiaceae
AJ938142, Burkholderia rhizoxinica, Burkholderiaceae
AF139173, Pandoraea apista, type sp., Burkholderiaceae
Y09879, Pandoraea norimbergensis, Burkholderiaceae
AB510957, Pandoraea faecigallinarum, Burkholderiaceae
AB510956, Pandoraea vervacti, Burkholderiaceae
AY268170, Pandoraea pnomenusa, Burkholderiaceae
AB469785, Pandoraea oxalativorans, Burkholderiaceae
AF139176, Pandoraea sputorum, Burkholderiaceae
AF139175, Pandoraea pulmonicola, Burkholderiaceae
EF397578, Pandoraea thiooxydans, Burkholderiaceae
AEQP01000026, Lautropia mirabilis, type sp., Burkholderiaceae

Oxalobacteraceae (57)
EU808005, Massilia niastensis, Oxalobacteraceae
FN814307, Massilia consociata, Oxalobacteraceae
EF688526, Massilia aerilata, Oxalobacteraceae
FR773700, Massilia oculi, Oxalobacteraceae
AM231588, Massilia aurea, Oxalobacteraceae
EF546777, Massilia brevitalea, Oxalobacteraceae
FJ969486, Massilia jejuensis, Oxalobacteraceae
EU808006, Massilia niabensis, Oxalobacteraceae
AY679161, Massilia alkalitolerans, Oxalobacteraceae
AM774587, Massilia varians, Oxalobacteraceae
AM774589, Massilia haematophila, Oxalobacteraceae
FJ969487, Massilia suwonensis, Oxalobacteraceae
X65590, Telluria chitinolytica, Oxalobacteraceae
X65589, Telluria mixta, type sp., Oxalobacteraceae
U54470, Massilia timonae, type sp., Oxalobacteraceae
HM777013, Massilia flava, Oxalobacteraceae
AY965999, Massilia albidiflava, Oxalobacteraceae
AY966001, Massilia lutea, Oxalobacteraceae
AY376163, Duganella violaceinigra, Oxalobacteraceae
AY965998, Massilia dura, Oxalobacteraceae
AY966000, Massilia plicata, Oxalobacteraceae
D14256, Duganella zoogloeoides, type sp., Oxalobacteraceae
HM038005, Rugamonas rubra, type sp., Pseudomonadaceae
Y08845, Janthinobacterium agaricidamnosum, Oxalobacteraceae
Y08846, Janthinobacterium lividum, type sp., Oxalobacteraceae
AB074523, Aquaspirillum arcticum, Neisseriaceae
AM397630, Undibacterium pigrum, type sp., Oxalobacteraceae
AM397629, Undibacterium parvum, Oxalobacteraceae
GQ379228, Undibacterium oligocarboniphilum, Oxalobacteraceae
EU489741, Herminiimonas glaciei, Oxalobacteraceae
AM493906, Herminiimonas saxobsidens, Oxalobacteraceae
AY728038, Herminiimonas arsenicoxydans, Oxalobacteraceae
AM085762, Herminiimonas aquatilis, Oxalobacteraceae
AY676462, Herminiimonas fonticola, type sp., Oxalobacteraceae
AB469788, Oxalicibacterium faecigallinarum, Oxalobacteraceae
AY061962, Oxalicibacterium flavum, type sp., Oxalobacteraceae
AB469786, Oxalicibacterium horti, Oxalobacteraceae
AB008503, Oxalicibacterium solurbis, Oxalobacteraceae
AB021366, Herbaspirillum huttiense subsp. huttiense, Oxalobacteraceae
AB109890, Herbaspirillum huttiense subsp. putei, Oxalobacteraceae
FJ267649, Herbaspirillum aquaticum, Oxalobacteraceae
AB094401, Herbaspirillum chlorophenolicum, Oxalobacteraceae
AJ238358, Herbaspirillum frisingense, Oxalobacteraceae
AF137508, Herbaspirillum rubrisubalbicans, Oxalobacteraceae
Y10146, Herbaspirillum seropedicae, type sp., Oxalobacteraceae
DQ150563, Herbaspirillum hiltneri, Oxalobacteraceae
AF543312, Herbaspirillum lusitanum, Oxalobacteraceae
 DQ188986, Herbaspirillum rhizosphaerae, Oxalobacteraceae
AB074524, Herbaspirillum autotrophicum, Oxalobacteraceae
AY281146, Collimonas arenae, Oxalobacteraceae
AY281137, Collimonas pratensis, Oxalobacteraceae
AJ310394, Collimonas fungivorans, type sp., Oxalobacteraceae
HQ830497, Herbaspirillum aurantiacum, Oxalobacteraceae
HQ830498, Herbaspirillum soli, Oxalobacteraceae
HQ830496, Herbaspirillum canariense, Oxalobacteraceae
U49757, Oxalobacter formigenes, type sp., Oxalobacteraceae
FR733700, Oxalobacter vibrioformis, Oxalobacteraceae

GU441679, Glaciimonas immobilis, type sp., Oxalobacteraceae

X92555, Paucimonas lemoignei, type sp., Burkholderiaceae
AF155567, Cupriavidus oxalaticus, Burkholderiaceae
AF300324, Cupriavidus taiwanensis, Burkholderiaceae
AB054961, Cupriavidus laharis, Burkholderiaceae
AB121221, Cupriavidus pinatubonensis, Burkholderiaceae
AF312022, Cupriavidus basilensis, Burkholderiaceae
AF312020, Cupriavidus campinensis, Burkholderiaceae
AF191737, Cupriavidus necator, type sp., Burkholderiaceae
AB104447, Wautersia numazuensis, Burkholderiaceae
AF500583, Cupriavidus respiraculi, Burkholderiaceae
D87999, Cupriavidus metallidurans, Burkholderiaceae
AF085226, Cupriavidus pauculus, Burkholderiaceae
AF076645, Cupriavidus gilardii, Burkholderiaceae
FN430567, Cupriavidus pampae, Burkholderiaceae
EF016361, Ralstonia solanacearum, Burkholderiaceae
AB021403, Ralstonia syzygii, Burkholderiaceae
AF488779, Ralstonia insidiosa, Burkholderiaceae
AJ270258, Ralstonia mannitolilytica, Burkholderiaceae
AY741342, Ralstonia pickettii, type sp., Burkholderiaceae
FM208180, Polynucleobacter acidiphobus, Burkholderiaceae
FM208181, Polynucleobacter difficilis, Burkholderiaceae
AM397067, Polynucleobacter necessarius subsp. necessarius, type sp., Burkholderiaceae
AJ879783, Polynucleobacter necessarius subsp. asymbioticus, Burkholderiaceae
AJ550672, Polynucleobacter cosmopolitanus, Burkholderiaceae
FM208182, Polynucleobacter rarus, Burkholderiaceae

Alcaligenaceae (45)
AM944734, Advenella incenata, type sp., Alcaligenaceae
AJ864470, Advenella kashmirensis, Alcaligenaceae
AY880023, Advenella mimigardefordensis, Alcaligenaceae
AJ251912, Oligella ureolytica, Alcaligenaceae
AF133538, Oligella urethralis, type sp., Alcaligenaceae
AJ277742, Brackiella oedipodis, type sp., Alcaligenaceae
AF067729, Taylorella asinigenitalis, Alcaligenaceae
X68645, Taylorella equigenitalis, type sp., Alcaligenaceae
Y11890, Pelistega europaea, type sp., Alcaligenaceae
FN556191, Candidimonas nitroreducens, type sp., Alcaligenaceae
FN556192, Candidimonas humi, Alcaligenaceae
DQ466075, Parapusillimonas granuli, type sp., Alcaligenaceae
GQ232740, Pusillimonas harenae, Alcaligenaceae
EF672088, Pusillimonas ginsengisoli, Alcaligenaceae
GQ241322, Pusillimonas soli, Alcaligenaceae
AY695828, Pusillimonas noertemannii, type sp., Alcaligenaceae
FJ793551, Paralcaligenes ureilyticus, type sp., Alcaligenaceae
AB166879, Castellaniella caeni, Alcaligenaceae
EU873313, Castellaniella ginsengisoli, Alcaligenaceae
U82826, Castellaniella denitrificans, Alcaligenaceae
AJ005447, Castellaniella defragrans, type sp., Alcaligenaceae
GQ241321, Castellaniella daejeonensis, Alcaligenaceae
AY296718, Alcaligenes faecalis subsp. phenolicus, Alcaligenaceae
D88008, Alcaligenes faecalis subsp. faecalis, type sp., Alcaligenaceae
AJ242986, Alcaligenes faecalis subsp. parafaecalis, Alcaligenaceae
FN391024, Paenalcaligenes hominis, type sp., Alcaligenaceae
AJ278451, Achromobacter denitrificans, Alcaligenaceae
AB010840, Achromobacter ruhlandii, Alcaligenaceae
Y14908, Achromobacter xylosoxidans subsp. xylosoxidans, type sp., Alcaligenaceae
AY170847, Achromobacter insolitus, Alcaligenaceae
AY170848, Achromobacter spanius, Alcaligenaceae
AB010841, Achromobacter piechaudii, Alcaligenaceae
EU150134, Achromobacter marplatensis, Alcaligenaceae
AF177666, Bordetella avium, Alcaligenaceae
AJ277798, Bordetella trematum, Alcaligenaceae
AF177667, Bordetella hinzii, Alcaligenaceae
U04948, Bordetella bronchiseptica, Alcaligenaceae
U04949, Bordetella parapertussis, Alcaligenaceae
U04820, Bordetella holmesii, Alcaligenaceae
U04950, Bordetella pertussis, type sp., Alcaligenaceae
AJ249861, Bordetella petrii, Alcaligenaceae
AY131213, Kerstersia gyiorum, type sp., Alcaligenaceae
EF100696, Pigmentiphaga daeguensis, Alcaligenaceae
AF282916, Pigmentiphaga kullae, type sp., Alcaligenaceae
EU583723, Pigmentiphaga litoralis, Alcaligenaceae

Sutterellaceae (5)
AJ566849, Sutterella stercoricanis, Sutterellaceae
GU585669, Sutterella wadsworthensis, type sp., Sutterellaceae
AB300989, Sutterella parvirubra, Sutterellaceae
AB491209, Parasutterella secunda, Sutterellaceae
AB370250, Parasutterella excrementihominis, type sp., Sutterellaceae

AB089482, Derxia gummosa, type sp., Alcaligenaceae

Neisseriaceae (71)
AB525415, Eikenella corrodens, type sp., Neisseriaceae
EF212897, Stenoxybacter acetivorans, Neisseriaceae
AF328147, Simonsiella muelleri, type sp., Neisseriaceae
AB087265, Bergeriella denitrificans, type sp., Neisseriaceae
AY551999, Kingella kingae, type sp., Neisseriaceae
ADBF01000003, Neisseria elongata subsp. glycolytica, Neisseriaceae
L06171, Neisseria elongata subsp. elongata, Neisseriaceae
M22516, Kingella denitrificans, Neisseriaceae
AJ239288, Neisseria animalis, Neisseriaceae
X07714, Neisseria gonorrhoeae, type sp., Neisseriaceae
AJ239289, Neisseria polysaccharea, Neisseriaceae
ACDY02000019, Neisseria cinerea, Neisseriaceae
GU233442, Neisseria iguanae, Neisseriaceae
AJ239286, Neisseria lactamica, Neisseriaceae
ACKO02000016, Neisseria sicca, Neisseriaceae
L06168, Neisseria flavescens, Neisseriaceae
AJ239291, Neisseria subflava, Neisseriaceae
AJ629192, Kingella potus, Neisseriaceae
AY560519, Neisseria bacilliformis, Neisseriaceae
 L06164, Kingella oralis, Neisseriaceae
FJ654664, Neisseria shayeganii, Neisseriaceae
AF328150, Conchiformibius kuhniae, Neisseriaceae
AB087261, Conchiformibius steedae, type sp., Neisseriaceae
AJ586614, Uruburuella suis, type sp., Neisseriaceae
L06170, Neisseria canis, Neisseriaceae
AF487709, Neisseria dentiae, Neisseriaceae
FJ654662, Neisseria wadsworthii, Neisseriaceae
DQ006843, Neisseria zoodegmatis, Neisseriaceae
AB087264, Alysiella crassa, Neisseriaceae
AF487710, Alysiella filiformis, type sp., Neisseriaceae
DQ006842, Neisseria animaloris, Neisseriaceae
L06174, Vitreoscilla stercoraria, Neisseriaceae
AM396358, Paludibacterium yongneupense, type sp., Neisseriaceae
EF626692, Pseudogulbenkiania subflava, type sp., Neisseriaceae
DQ415656, Gulbenkiania indica, Neisseriaceae
AM295491, Gulbenkiania mobilis, type sp., Neisseriaceae
EU109734, Chromobacterium aquaticum, Neisseriaceae
DQ785104, Chromobacterium haemolyticum, Neisseriaceae
AJ871127, Chromobacterium piscinae, Neisseriaceae
AJ871128, Chromobacterium pseudoviolaceum, Neisseriaceae
AE016825, Chromobacterium violaceum , type sp., Neisseriaceae
AY344056, Chromobacterium subtsugae, Neisseriaceae
EU594330, Aquitalea denitrificans, Neisseriaceae
DQ018117, Aquitalea magnusonii, type sp., Neisseriaceae
AB021385, Vogesella indigofera, type sp., Neisseriaceae
EU287927, Vogesella lacus, Neisseriaceae
EF626691, Vogesella perlucida, Neisseriaceae
GQ246809, Vogesella mureinivorans, Neisseriaceae
AB076000, Aquaspirillum putridiconchylium, Neisseriaceae
AB074518, Aquaspirillum serpens, type sp., Neisseriaceae
AF389085, Laribacter hongkongensis, type sp., Neisseriaceae
U89333, Microvirgula aerodenitrificans, type sp., Neisseriaceae
FJ593907, Chitinibacter alvei, Neisseriaceae
AY264287, Chitinibacter tainanensis, type sp., Neisseriaceae
AB681839, Iodobacter fluviatilis, type sp., Neisseriaceae
FJ347759, Deefgea chitinilytica, Neisseriaceae
AM397080, Deefgea rivuli, type sp., Neisseriaceae
EU682455, Chitinilyticum litopenaei, Neisseriaceae
DQ314581, Chitinilyticum aquatile, type sp., Neisseriaceae
Y17602, Formivibrio citricus, type sp., Neisseriaceae
AB453176, Chitiniphilus shinanonensis, type sp., Neisseriaceae
DQ836355, Andreprevotia chitinilytica, type sp., Neisseriaceae
EU287926, Andreprevotia lacus, Neisseriaceae
FJ669217, Jeongeupia naejangsanensis , Neisseriaceae
AB326110, Silvimonas iriomotensis, Neisseriaceae
AB194302, Silvimonas terrae, type sp., Neisseriaceae
AB326111, Silvimonas amylolytica, Neisseriaceae
DQ256728, Chitinimonas koreensis, Burkholderiaceae
AY323827, Chitinimonas taiwanensis, type sp., Burkholderiaceae
GU362099, Chitinivorax tropicus, type sp., Unclassified Betaproteobacteria
DQ280369, Leeia oryzae, type sp., Neisseriaceae

EU685841, Thiobacillus thiophilus, Hydrogenophilaceae

M79426, Thiobacillus thioparus, type sp., Hydrogenophilaceae
AJ243144, Thiobacillus denitrificans, Hydrogenophilaceae
U58019, Thiobacillus aquaesulis, Hydrogenophilaceae

Methylophilaceae (13)
AB193724, Methylophilus methylotrophus, type sp., Methylophilaceae
EU194887, Methylophilus rhizosphaerae, Methylophilaceae
FJ872109, Methylophilus luteus, Methylophilaceae
FJ872108, Methylophilus flavus, Methylophilaceae
AB193725, Methylophilus leisingeri, Methylophilaceae
HM001269, Methylophilus glucosoxydans, Methylophilaceae
DQ287786, Methylotenera mobilis, type sp., Methylophilaceae
CP002056, Methylotenera versatilis, Methylophilaceae
FR733702, Methylovorus glucosotrophus, type sp., Methylophilaceae
AY486132, Methylovorus mays, Methylophilaceae
DQ287787, Methylobacillus flagellatus, Methylophilaceae
FR733701, Methylobacillus glycogenes, type sp., Methylophilaceae
AY298905, Methylobacillus pratensis, Methylophilaceae

Spirillaceae (2)
GU585672, Spirillum volutans, type sp., Spirillaceae
AY845251, Spirillum winogradskyi, Spirillaceae

AB506456, Sulfuricella denitrificans, type sp., Hydrogenophilaceae

Nitrosomonadaceae (3)
AB070982, Nitrosomonas europaea, type sp., Nitrosomonadaceae
AY123795, Nitrosomonas eutropha, Nitrosomonadaceae
CP000103, Nitrosospira multiformis , Nitrosomonadaceae

EF219370, Georgfuchsia toluolica, type sp., Rhodocyclaceae

AB552842, Sulfuritalea hydrogenivorans, type sp., Rhodocyclaceae
AJ306683, Sterolibacterium denitrificans, type sp., Rhodocyclaceae
DQ442273, Methyloversatilis universalis, type sp., Rhodocyclaceae
AY879297, Denitratisoma oestradiolicum, type sp., Rhodocyclaceae
AB180657, Thiobacter subterraneus, type sp., Unclassified Burkholderiales

Rhodocyclaceae (19)
AJ318917, Dechloromonas denitrificans, Rhodocyclaceae
AY277621, Dechloromonas hortensis, Rhodocyclaceae
Y17060, Ferribacterium limneticum, type sp., Rhodocyclaceae
AY007722, Quatrionicoccus australiensis, type sp., Rhodocyclaceae
AF047462, Dechloromonas agitata, type sp., Rhodocyclaceae
AB166882, Azonexus caeni, Rhodocyclaceae
EF158390, Azonexus hydrophilus, Rhodocyclaceae
AF011350, Azonexus fungiphilus, type sp., Rhodocyclaceae
Y17601, Propionivibrio dicarboxylicus, type sp., Rhodocyclaceae
AF016690, Propionivibrio pelophilus, Rhodocyclaceae
AJ307983, Propionivibrio limicola, Rhodocyclaceae
M34132, Rhodocyclus purpureus, type sp., Rhodocyclaceae
D16208, Rhodocyclus tenuis, Rhodocyclaceae
AF011347, Azospira oryzae, type sp., Rhodocyclaceae
DQ974114, Azospira restricta, Rhodocyclaceae
DQ413148, Zoogloea caeni, Rhodocyclaceae
AJ011506, Zoogloea resiniphila, Rhodocyclaceae
AB201043, Zoogloea oryzae, Rhodocyclaceae
X74913, Zoogloea ramigera, type sp., Rhodocyclaceae

AF011346, Azovibrio restrictus, type sp., Rhodocyclaceae

AF123077, Azoarcus toluclasticus, Rhodocyclaceae
L33694, Azoarcus tolulyticus, Rhodocyclaceae
L33692, Azoarcus toluvorans, Rhodocyclaceae
X77679, Azoarcus evansii, Rhodocyclaceae
 Y14701, Azoarcus anaerobius, Rhodocyclaceae
AJ315676, Azoarcus buckelii, Rhodocyclaceae
AF011345, Azoarcus indigens, type sp., Rhodocyclaceae
AF011343, Azoarcus communis, Rhodocyclaceae
AJ005817, Thauera terpenica, Rhodocyclaceae
AJ315677, Thauera aminoaromatica, Rhodocyclaceae
Y17591, Thauera selenatis, type sp., Rhodocyclaceae
AJ315678, Thauera phenylacetica, Rhodocyclaceae
X77118, Thauera aromatica, Rhodocyclaceae
AF123264, Thauera chlorobenzoica, Rhodocyclaceae
Y17590, Thauera mechernichensis, Rhodocyclaceae
AB021377, Thauera butanivorans, Rhodocyclaceae
AJ005816, Thauera linaloolentis, Rhodocyclaceae

Hydrogenophilaceae (5)
FR749905, Hydrogenophilus hirschii, Hydrogenophilaceae
AB009828, Hydrogenophilus thermoluteolus, type sp., Hydrogenophilaceae
EU625664, Hydrogenophilus islandicus, Hydrogenophilaceae
AY219713, Petrobacter succinatimandens, type sp., Hydrogenophilaceae
AJ504663, Tepidiphilus margaritifer, type sp., Hydrogenophilaceae

DQ665916, Uliginosibacterium gangwonense, type sp., Rhodocyclaceae

Xanthomonadaceae (132)
FR733718, Xanthomonas euvesicatoria, Xanthomonadaceae
FR749910, Xanthomonas perforans, Xanthomonadaceae
AB021399, Pseudomonas cissicola, Pseudomonadaceae
Y10762, Xanthomonas cassavae, Xanthomonadaceae
Y10757, Xanthomonas arboricola, Xanthomonadaceae
Y10764, Xanthomonas bromi, Xanthomonadaceae
GU993265, Xanthomonas phaseoli, Xanthomonadaceae
Y10765, Xanthomonas codiaei, Xanthomonadaceae
X95921, Xanthomonas oryzae, Xanthomonadaceae
Y10758, Xanthomonas pisi, Xanthomonadaceae
FR749942, Xanthomonas citri subsp. malvacearum, Xanthomonadaceae
Y10755, Xanthomonas vasicola, Xanthomonadaceae
Y10759, Xanthomonas hortorum, Xanthomonadaceae
X95920, Xanthomonas fragariae, Xanthomonadaceae
JQ955625, Xanthomonas dyei, Xanthomonadaceae
X95922, Xanthomonas populi, Xanthomonadaceae
AF208315, Xanthomonas cynarae, Xanthomonadaceae
Y10763, Xanthomonas theicola, Xanthomonadaceae
AE008922, Xanthomonas campestris, type sp., Xanthomonadaceae
Y10761, Xanthomonas vesicatoria, Xanthomonadaceae
Y10760, Xanthomonas cucurbitae, Xanthomonadaceae
FR749911, Xanthomonas gardneri, Xanthomonadaceae
X95919, Xanthomonas axonopodis, Xanthomonadaceae
AY650027, Pseudoxanthomonas kaohsiungensis, Xanthomonadaceae
AY550263, Pseudoxanthomonas koreensis, Xanthomonadaceae
AY550264, Pseudoxanthomonas daejeonensis, Xanthomonadaceae
AY927994, Pseudoxanthomonas suwonensis, Xanthomonadaceae
AB008507, Pseudoxanthomonas japonensis, Xanthomonadaceae
AF273082, Pseudoxanthomonas mexicana, Xanthomonadaceae
EF424397, Pseudoxanthomonas indica, Xanthomonadaceae
AF427039, Pseudoxanthomonas taiwanensis, Xanthomonadaceae
AJ012231, Pseudoxanthomonas broegbernensis, type sp., Xanthomonadaceae
AF203388, Xylella fastidiosa subsp. multiplex, Xanthomonadaceae
AF192343, Xylella fastidiosa subsp. fastidiosa, type sp., Xanthomonadaceae
AB021391, Pseudomonas boreopolis, Pseudomonadaceae
AF273080, Stenotrophomonas acidaminiphila, Xanthomonadaceae
GQ241320, Stenotrophomonas daejeonensis, Xanthomonadaceae
AJ012229, Stenotrophomonas nitritireducens, Xanthomonadaceae
AM403589, Stenotrophomonas terrae, Xanthomonadaceae
AJ131116, Pseudomonas pictorum, Pseudomonadaceae
AM403587, Stenotrophomonas humi, Xanthomonadaceae
DQ109037, Stenotrophomonas ginsengisoli, Xanthomonadaceae
AB166885, Stenotrophomonas koreensis, Xanthomonadaceae
AB021406, Pseudomonas beteli, Pseudomonadaceae
AB021405, Pseudomonas hibiscicola, Pseudomonadaceae
AB294553, Stenotrophomonas maltophilia, type sp., Xanthomonadaceae
FJ748683, Stenotrophomonas pavanii, Xanthomonadaceae
AB021404, Pseudomonas geniculata, Pseudomonadaceae
EU573216, Stenotrophomonas chelatiphaga, Xanthomonadaceae
AJ293463, Stenotrophomonas rhizophila, Xanthomonadaceae
EF575564, Pseudoxanthomonas sacheonensis, Xanthomonadaceae
DQ438977, Pseudoxanthomonas yeongjuensis, Xanthomonadaceae
AY686710, Pseudoxanthomonas kalamensis, Xanthomonadaceae
DQ178977, Pseudoxanthomonas dokdonensis, Xanthomonadaceae
AM418384, Pseudoxanthomonas spadix, Xanthomonadaceae
Y10754, Xanthomonas hyacinthi, Xanthomonadaceae
Y10756, Xanthomonas melonis, Xanthomonadaceae
X99299, Xanthomonas translucens, Xanthomonadaceae
X95918, Xanthomonas albilineans, Xanthomonadaceae
Y10766, Xanthomonas sacchari, Xanthomonadaceae
EU780693, Lysobacter bugurensis, Xanthomonadaceae
EU833988, Lysobacter xinjiangensis, Xanthomonadaceae
AB245359, Lysobacter panaciterrae, Xanthomonadaceae
EF626688, Luteimonas aquatica, Xanthomonadaceae
DQ846687, Luteimonas composti, Xanthomonadaceae
EU295459, Luteimonas marina, Xanthomonadaceae
AJ012228, Luteimonas mephitis, type sp., Xanthomonadaceae
GU199001, Luteimonas lutimaris, Xanthomonadaceae
EF660758, Luteimonas aestuarii, Xanthomonadaceae
FJ948107, Luteimonas terricola, Xanthomonadaceae
EU376963, Lysobacter oryzae, Xanthomonadaceae
DQ191179, Lysobacter yangpyeongensis, Xanthomonadaceae
DQ462461, Lysobacter niabensis, Xanthomonadaceae
AB166878, Lysobacter koreensis, Xanthomonadaceae
EU908051, Lysobacter korlensis, Xanthomonadaceae
AJ298291, Lysobacter enzymogenes, type sp., Xanthomonadaceae
AB019582, Lysobacter antibioticus, Xanthomonadaceae
AB161361, Lysobacter gummosus, Xanthomonadaceae
EF488749, Lysobacter capsici, Xanthomonadaceae
EF623862, Lysobacter soli, Xanthomonadaceae
AB161360, Lysobacter brunescens, Xanthomonadaceae
AY557615, Silanimonas lenta, type sp., Xanthomonadaceae
EF100698, Lysobacter dokdonensis, Xanthomonadaceae
DQ462462, Lysobacter niastensis, Xanthomonadaceae
AJ519986, Thermomonas fusca, Xanthomonadaceae
DQ154906, Thermomonas koreensis, Xanthomonadaceae
AJ519989, Thermomonas brevis, Xanthomonadaceae
AJ300185, Thermomonas haemolytica, type sp., Xanthomonadaceae
AF542054, Thermomonas hydrothermalis, Xanthomonadaceae
AB245363, Lysobacter ginsengisoli, Xanthomonadaceae
 EU237492, Lysobacter ximonensis, Xanthomonadaceae
AB161359, Lysobacter concretionis, Xanthomonadaceae
HQ315827, Lysobacter arseniciresistens, Xanthomonadaceae
AM283465, Lysobacter defluvii, Xanthomonadaceae
AB299978, Lysobacter spongiicola, Xanthomonadaceae
DQ191178, Lysobacter daejeonensis, Xanthomonadaceae
GU086401, Lysobacter ruishenii, Xanthomonadaceae
EU376961, Arenimonas oryziterrae, Xanthomonadaceae
HQ698842, Arenimonas metalli, Xanthomonadaceae
AM229324, Arenimonas composti, Xanthomonadaceae
DQ239766, Arenimonas malthae, Xanthomonadaceae
AM229325, Arenimonas daejeonensis, Xanthomonadaceae
DQ411038, Arenimonas donghaensis, type sp., Xanthomonadaceae
AB245362, Dokdonella ginsengisoli, Xanthomonadaceae
EU685334, Dokdonella soli, Xanthomonadaceae
AJ969432, Dokdonella fugitiva, Xanthomonadaceae
AY987368, Dokdonella koreensis, type sp., Xanthomonadaceae
EU741687, Rudaea cellulosilytica, type sp., Xanthomonadaceae
AY544768, Aquimonas voraii, type sp., Xanthomonadaceae
AF039167, Rhodanobacter lindaniclasticus, type sp., Xanthomonadaceae
AB286179, Rhodanobacter thiooxydans, Xanthomonadaceae
EU332826, Rhodanobacter ginsenosidimutans, Xanthomonadaceae
EU332829, Rhodanobacter panaciterrae, Xanthomonadaceae
EF166076, Rhodanobacter terrae, Xanthomonadaceae
FJ605268, Rhodanobacter soli, Xanthomonadaceae
AB100608, Rhodanobacter fulvus, Xanthomonadaceae
AM087226, Rhodanobacter spathiphylli, Xanthomonadaceae
EU682683, Frateuria terrea, Xanthomonadaceae
EF166075, Rhodanobacter ginsengisoli, Xanthomonadaceae
AB091194, Frateuria aurantia, type sp., Xanthomonadaceae
AB245367, Dyella ginsengisoli, Xanthomonadaceae
EU604272, Dyella soli, Xanthomonadaceae
AY884571, Dyella koreensis, Xanthomonadaceae
AM939778, Dyella marensis, Xanthomonadaceae
EF397574, Dyella thiooxydans, Xanthomonadaceae
AJ580498, Luteibacter rhizovicinus, type sp., Xanthomonadaceae
FM212561, Luteibacter anthropi, Xanthomonadaceae
DQ181549, Luteibacter yeojuensis, Xanthomonadaceae
AB110498, Dyella japonica, type sp., Xanthomonadaceae
EU604273, Dyella terrae, Xanthomonadaceae
AJ311653, Fulvimonas soli, type sp., Xanthomonadaceae
FN298515, Pseudofulvimonas gallinarii, type sp., Xanthomonadaceae

AF387301, Acidiferrobacter thiooxydans, type sp., Ectothiorhodospiraceae

AF110274, Beggiatoa alba, type sp., Thiotrichaceae
DQ834966, Methylohalomonas lacus, type sp., Unclassified Gammaproteobacteria

Moraxellaceae (79)
U39399, Psychrobacter immobilis, type sp., Moraxellaceae
U46144, Psychrobacter phenylpyruvicus, Moraxellaceae
AB094794, Psychrobacter okhotskensis, Moraxellaceae
AY660685, Psychrobacter cryohalolentis, Moraxellaceae
AY639871, Psychrobacter cibarius, Moraxellaceae
AJ609555, Psychrobacter urativorans, Moraxellaceae
AJ312213, Psychrobacter glacincola, Moraxellaceae
AJ609556, Psychrobacter frigidicola, Moraxellaceae
AJ430828, Psychrobacter luti, Moraxellaceae
AY444822, Psychrobacter arcticus, Moraxellaceae
AJ430827, Psychrobacter fozii, Moraxellaceae
AJ313425, Psychrobacter nivimaris, Moraxellaceae
AB453700, Psychrobacter piscatorii, Moraxellaceae
AJ272303, Psychrobacter proteolyticus, Moraxellaceae
AY722804, Psychrobacter aquimaris, Moraxellaceae
AY722805, Psychrobacter namhaensis, Moraxellaceae
AJ584833, Psychrobacter aquaticus, Moraxellaceae
AJ584832, Psychrobacter vallis, Moraxellaceae
AJ309941, Psychrobacter marincola, Moraxellaceae
AJ309940, Psychrobacter submarinus, Moraxellaceae
AJ539104, Psychrobacter salsus, Moraxellaceae
AF441201, Psychrobacter jeotgali, Moraxellaceae
AJ609272, Psychrobacter maritimus, Moraxellaceae
AY513645, Psychrobacter alimentarius, Moraxellaceae
AJ421528, Psychrobacter faecalis, Moraxellaceae
AJ437696, Psychrobacter pulmonis, Moraxellaceae
AB438958, Psychrobacter fulvigenes, Moraxellaceae
AY842259, Psychrobacter celer, Moraxellaceae
AB016057, Psychrobacter pacificensis, Moraxellaceae
EU939718, Psychrobacter aestuarii, Moraxellaceae
AJ609273, Psychrobacter arenosus, Moraxellaceae
HM212668, Psychrobacter sanguinis, Moraxellaceae
FM165580, Psychrobacter lutiphocae, Moraxellaceae
AJ550856, Enhydrobacter aerosaccus, type sp., Moraxellaceae
HM161851, Moraxella atlantae, Moraxellaceae
DQ156147, Moraxella boevrei, Moraxellaceae
FR822735, Moraxella lincolnii, Moraxellaceae
AM884564, Moraxella pluranimalium, Moraxellaceae
FM872292, Moraxella porci, Moraxellaceae
AF005188, Moraxella cuniculi, Moraxellaceae
AF005182, Moraxella bovis, Moraxellaceae
AF005187, Moraxella caviae, Moraxellaceae
DQ153089, Moraxella bovoculi, Moraxellaceae
AF005186, Moraxella ovis, Moraxellaceae
D64049, Moraxella lacunata, type sp., Moraxellaceae
AF005184, Moraxella equi, Moraxellaceae
DQ156148, Moraxella caprae, Moraxellaceae
HM152563, Moraxella nonliquefaciens, Moraxellaceae
AF005185, Moraxella catarrhalis, Moraxellaceae
AJ269511, Moraxella canis, Moraxellaceae
AF509827, Acinetobacter bouvetii, Moraxellaceae
Z93440, Acinetobacter johnsonii, Moraxellaceae
AJ278311, Acinetobacter schindleri, Moraxellaceae
AJ293694, Acinetobacter gyllenbergii, Moraxellaceae
AF509830, Acinetobacter tandoii, Moraxellaceae
AF509825, Acinetobacter tjernbergiae, Moraxellaceae
X81662, Acinetobacter haemolyticus, Moraxellaceae
AJ626712, Acinetobacter beijerinckii, Moraxellaceae
X81665, Acinetobacter lwoffii, Moraxellaceae
X81659, Acinetobacter guillouiae, Moraxellaceae
Z93443, Acinetobacter bereziniae, Moraxellaceae
HQ180192, Acinetobacter nosocomialis, Moraxellaceae
HQ180184, Acinetobacter pittii, Moraxellaceae
AJ888983, Acinetobacter calcoaceticus, type sp., Moraxellaceae
DQ832256, Acinetobacter brisouii, Moraxellaceae
AF509820, Acinetobacter baylyi, Moraxellaceae
 AF509823, Acinetobacter towneri, Moraxellaceae
EU290155, Acinetobacter soli, Moraxellaceae
AJ275038, Acinetobacter ursingii, Moraxellaceae
AJ293691, Acinetobacter parvus, Moraxellaceae
AJ295007, Acinetobacter venetianus, Moraxellaceae
X81660, Acinetobacter baumannii, Moraxellaceae
AF509829, Acinetobacter gerneri, Moraxellaceae
X81664, Acinetobacter junii, Moraxellaceae
X81666, Acinetobacter radioresistens, Moraxellaceae
EF204258, Acinetobacter rudis, Moraxellaceae
AF513979, Alkanindiges illinoisensis, type sp., Moraxellaceae
GU731671, Paraperlucidibaca baekdonensis, type sp., Moraxellaceae
DQ664237, Perlucidibaca piscinae, type sp., Moraxellaceae

Sinobacteraceae (12)
AJ001010, Nevskia ramosa, type sp., Nevskiaceae
EF178286, Nevskia soli, Nevskiaceae
GQ845011, Nevskia terrae, Nevskiaceae
AY363245, Hydrocarboniphaga effusa, type sp., Nevskiaceae
EU313812, Hydrocarboniphaga daqingensis, Nevskiaceae
AB257720, Panacagrimonas perspica, type sp., Xanthomonadaceae
AJ555478, Solimonas variicoloris, Unclassified Gammaproteobacteria
EF067861, Solimonas soli, type sp., Unclassified Gammaproteobacteria
EF154515, Solimonas flava, Unclassified Gammaproteobacteria
EU303271, Solimonas aquatica, Unclassified Gammaproteobacteria
AJ313020, Alkanibacter difficilis, type sp., Sinobacteraceae
EF605262, Steroidobacter denitrificans, type sp., Sinobacteraceae

Salinisphaeraceae (4)
EF988634, Salinisphaera dokdonensis , Salinisphaeraceae
AJ421425, Salinisphaera shabanensis, type sp., Salinisphaeraceae
EU740416, Salinisphaera hydrothermalis, Salinisphaeraceae
HM137558, Salinisphaera orenii, Salinisphaeraceae

Halothiobacillaceae (6)
U58020, Halothiobacillus halophilus, Halothiobacillaceae
M90662, Halothiobacillus hydrothermalis, Halothiobacillaceae
EU124668, Thioalkalibacter halophilus, type sp., Halothiobacillaceae
AF170419, Halothiobacillus kellyi, Halothiobacillaceae
AB304258, Thiofaba tepidiphila, type sp., Halothiobacillaceae
AB118236, Thiovirga sulfuroxydans, type sp., Halothiobacillaceae

Cardiobacteriaceae (4)
M35014, Cardiobacterium hominis, type sp., Cardiobacteriaceae
AF506987, Cardiobacterium valvarum, Cardiobacteriaceae
M35015, Suttonella indologenes, type sp., Cardiobacteriaceae
AJ717394, Suttonella ornithocola, Cardiobacteriaceae

EU008088, Ignatzschineria indica, Xanthomonadaceae

EU008089, Ignatzschineria ureiclastica, Xanthomonadaceae
AJ252143, Ignatzschineria larvae, type sp., Xanthomonadaceae
AM397063, Wohlfahrtiimonas chitiniclastica, type sp., Xanthomonadaceae
GU206550, Plasticicumulans acidivorans, type sp., Unclassified Gammaproteobacteria
AB266389, Thioprofundum hispidum, Thioalkalispiraceae
AB468957, Thioprofundum lithotrophicum, type sp., Thioalkalispiraceae
DQ469584, Thiohalophilus thiocyanatoxydans, type sp., Thioalkalispiraceae
HM208383, Coxiella burnetii, type sp., Coxiellaceae

Granulosicoccaceae (2)
EF495228, Granulosicoccus antarcticus, type sp., Granulosicoccaceae
FJ535355, Granulosicoccus coccoides, Granulosicoccaceae

AF481118, Thioalkalispira microaerophila, type sp., Thioalkalispiraceae

Chromatiaceae (45)
AJ242772, Thiocapsa litoralis, Chromatiaceae
AJ006062, Thiocapsa rosea, Chromatiaceae
AF112998, Thiocapsa marina, Chromatiaceae
AF113000, Thiocapsa roseopersicina, type sp., Chromatiaceae
Y12297, Thiolamprovum pedioforme, type sp., Chromatiaceae
AJ404006, Thiobaca trueperi, type sp., Chromatiaceae
AJ223235, Lamprocystis purpurea, Chromatiaceae
AJ006063, Lamprocystis roseopersicina, type sp., Chromatiaceae
EF999974, Thiodictyon bacillosum, Chromatiaceae
EF999973, Thiodictyon elegans, type sp., Chromatiaceae
Y11317, Thiocystis gelatinosa, Chromatiaceae
AJ224438, Thiocystis violascens, Chromatiaceae
AM086640, Thiocystis cadagnonensis, Chromatiaceae
Y12372, Thiocystis minor, Chromatiaceae
AM086641, Thiocystis chemoclinalis, Chromatiaceae
Y11315, Thiocystis violacea, type sp., Chromatiaceae
AJ223234, Chromatium okenii, type sp., Chromatiaceae
AJ224430, Isochromatium buderi, type sp., Chromatiaceae
AM282561, Thiorhodococcus kakinadensis, Chromatiaceae
FJ482231, Thiohalobacter thiocyanaticus, type sp., Unclassified Gammaproteobacteria
AJ971090, Thiorhodococcus mannitoliphagus, Chromatiaceae
Y11316, Thiorhodococcus minor, type sp., Chromatiaceae
AM993156, Thiorhodococcus modestalkaliphilus, Chromatiaceae
AM748925, Thiophaeococcus mangrovi, type sp., Chromatiaceae
AM282559, Thiorhodococcus bheemlicus, Chromatiaceae
AM712619, Allochromatium phaeobacterium, Chromatiaceae
Y12365, Allochromatium warmingii, Chromatiaceae
AM399029, Allochromatium renukae, Chromatiaceae
Y12369, Allochromatium minutissimum, Chromatiaceae
FM178268, Allochromatium vinosum, type sp., Chromatiaceae
FM210274, Marichromatium fluminis, Chromatiaceae
X93473, Marichromatium gracile, type sp., Chromatiaceae
AJ224439, Marichromatium purpuratum, Chromatiaceae
AJ543328, Marichromatium indicum, Chromatiaceae
AM180952, Marichromatium bheemlicum, Chromatiaceae
AM283535, Halochromatium roseum, Chromatiaceae
X98597, Halochromatium salexigens, type sp., Chromatiaceae
X93472, Halochromatium glycolicum, Chromatiaceae
AJ002796, Thiohalocapsa halophila, type sp., Chromatiaceae
AJ010125, Thioflavicoccus mobilis, type sp., Chromatiaceae
AJ277023, Thioalkalicoccus limnaeus, type sp., Chromatiaceae
Y12373, Thiococcus pfennigii, type sp., Chromatiaceae
X84316, Rhabdochromatium marinum, type sp., Chromatiaceae
AB016986, Thiorhodovibrio winogradskyi, type sp., Chromatiaceae
AM491592, Thiohalocapsa marina, Chromatiaceae

Ectothiorhodospiraceae (21)
AF329083, Thioalkalivibrio jannaschii, Ectothiorhodospiraceae
AF126546, Thioalkalivibrio versutus, type sp., Ectothiorhodospiraceae
 AF126547, Thioalkalivibrio nitratis, Ectothiorhodospiraceae
AF302081, Thioalkalivibrio thiocyanoxidans, Ectothiorhodospiraceae
AY346464, Thioalkalivibrio halophilus, Ectothiorhodospiraceae
AY079010, Thioalkalivibrio nitratireducens, Ectothiorhodospiraceae
AF151432, Thioalkalivibrio paradoxus, Ectothiorhodospiraceae
AJ006530, Thiorhodospira sibirica, type sp., Ectothiorhodospiraceae
AF126545, Thioalkalivibrio denitrificans, Ectothiorhodospiraceae
AY360060, Thioalkalivibrio thiocyanodenitrificans, Ectothiorhodospiraceae
EU709878, Thioalkalivibrio sulfidiphilus, Ectothiorhodospiraceae
X93476, Ectothiorhodospira marina, Ectothiorhodospiraceae
AM943121, Ectothiorhodospira variabilis, Ectothiorhodospiraceae
X93479, Ectothiorhodospira haloalkaliphila, Ectothiorhodospiraceae
FM244738, Ectothiorhodospira salini, Ectothiorhodospiraceae
X93481, Ectothiorhodospira mobilis, type sp., Ectothiorhodospiraceae
FR733667, Ectothiorhodospira shaposhnikovii, Ectothiorhodospiraceae
HM149323, Ectothiorhodospira magna, Ectothiorhodospiraceae
AY298904, Ectothiorhodosinus mongolicus, type sp., Ectothiorhodospiraceae
EU169227, Thiohalospira alkaliphila, Ectothiorhodospiraceae
DQ469576, Thiohalospira halophila, type sp., Ectothiorhodospiraceae

EF117909, Thiohalomonas denitrificans, type sp., Unclassified Gammaproteobacteria

DQ836238, Thiohalomonas nitratireducens, Unclassified Gammaproteobacteria
EU837269, Thioalbus denitrificans, type sp., Ectothiorhodospiraceae
DQ789390, Methylonatrum kenyense, type sp., Unclassified Gammaproteobacteria
X93477, Halorhodospira abdelmalekii, Ectothiorhodospiraceae
FR749892, Halorhodospira halochloris, Ectothiorhodospiraceae
CP000544, Halorhodospira halophila, type sp., Ectothiorhodospiraceae
AJ318525, Halorhodospira neutriphila, Ectothiorhodospiraceae
AF114783, Alkalispirillum mobile, type sp., Ectothiorhodospiraceae
AF406554, Alkalilimnicola ehrlichii, Ectothiorhodospiraceae
AJ404972, Alkalilimnicola halodurans, type sp., Ectothiorhodospiraceae
EF103128, Natronocella acetinitrilica, type sp., Ectothiorhodospiraceae
M26631, Arhodomonas aquaeolei, type sp., Ectothiorhodospiraceae
HM038001, Nitrococcus mobilis, type sp., Ectothiorhodospiraceae
AM404263, Aquisalimonas asiatica, type sp., Ectothiorhodospiraceae
AB536747, Methylothermus subterraneus, Methylococcaceae
AY829009, Methylothermus thermalis, type sp., Methylococcaceae
AJ581837, Methylohalobius crimeensis, type sp., Methylococcaceae
AB245479, Sulfurivirga caldicuralii, type sp., Piscirickettsiaceae
CP000127, Nitrosococcus oceani , Chromatiaceae

Acidithiobacillaceae (5)
AJ459804, Acidithiobacillus albertensis, Acidithiobacillaceae
Y11596, Acidithiobacillus thiooxidans, type sp., Acidithiobacillaceae
AF376020, Acidithiobacillus ferrivorans, Acidithiobacillaceae
AF465604, Acidithiobacillus ferrooxidans, Acidithiobacillaceae
Z29975, Acidithiobacillus caldus, Acidithiobacillaceae

AJ459801, Thermithiobacillus tepidarius, type sp., Thermithiobacillaceae

DQ469582, Thiohalorhabdus denitrificans, type sp., Unclassified Gammaproteobacteria

Alphaproteobacteria (1101)

Bradyrhizobiaceae (31)
M65248, Afipia felis, type sp., Bradyrhizobiaceae
AB021393, Pseudomonas carboxydohydrogena, Pseudomonadaceae
FR733697, Oligotropha carboxidovorans, type sp., Bradyrhizobiaceae
M69186, Afipia clevelandensis, Bradyrhizobiaceae
AF069956, Nitrobacter alkalicus, Bradyrhizobiaceae
CP000115, Nitrobacter winogradskyi, type sp., Bradyrhizobiaceae
AM114522, Nitrobacter vulgaris, Bradyrhizobiaceae
L11663, Nitrobacter hamburgensis, Bradyrhizobiaceae
AF123085, Rhodopseudomonas faecalis, Bradyrhizobiaceae
AB087719, Rhodopseudomonas rhenobacensis, Bradyrhizobiaceae
AB498818, Rhodopseudomonas pseudopalustris, Bradyrhizobiaceae
AM947938, Rhodopseudomonas parapalustris, Bradyrhizobiaceae
AB498815, Rhodopseudomonas palustris, type sp., Bradyrhizobiaceae
FN813512, Rhodopseudomonas harwoodiae, Bradyrhizobiaceae
D78366, Agromonas oligotrophica, type sp., Bradyrhizobiaceae
AF338176, Bradyrhizobium denitrificans, Bradyrhizobiaceae
AY372184, Bradyrhizobium betae, Bradyrhizobiaceae
AB300992, Bradyrhizobium iriomotense, Bradyrhizobiaceae
HQ231463, Bradyrhizobium huanghuaihaiense, Bradyrhizobiaceae
AF208513, Bradyrhizobium liaoningense, Bradyrhizobiaceae
AF193818, Bradyrhizobium yuanmingense, Bradyrhizobiaceae
AJ558025, Bradyrhizobium canariense, Bradyrhizobiaceae
U69638, Bradyrhizobium japonicum, type sp., Bradyrhizobiaceae
X87273, Rhizobium lupini, Rhizobiaceae
AF288304, Afipia birgiae, Bradyrhizobiaceae
U87759, Afipia broomeae, Bradyrhizobiaceae
AY029562, Afipia massiliensis, Bradyrhizobiaceae
AY624134, Bradyrhizobium jicamae, Bradyrhizobiaceae
U35000, Bradyrhizobium elkanii, Bradyrhizobiaceae
AY624135, Bradyrhizobium pachyrhizi, Bradyrhizobiaceae
GU433448, Bradyrhizobium lablabi, Bradyrhizobiaceae

DQ062742, Pseudolabrys taiwanensis, type sp., Xanthobacteraceae

DQ417335, Labrys neptuniae, Xanthobacteraceae
AY362040, Labrys portucalensis, Xanthobacteraceae
AB236172, Labrys methylaminiphilus, Xanthobacteraceae
AJ535707, Labrys monachus, type sp., Xanthobacteraceae
AB236170, Labrys miyagiensis, Xanthobacteraceae
AB236169, Labrys okinawensis, Xanthobacteraceae
EF382666, Labrys wisconsinensis, Xanthobacteraceae

Beijerinckiaceae (16)
AJ563931, Beijerinckia indica subsp. lacticogenes, Beijerinckiaceae
CP001016, Beijerinckia indica subsp. indica, type sp., Beijerinckiaceae
AJ563934, Beijerinckia derxii subsp. venezuelae, Beijerinckiaceae
AJ563933, Beijerinckia derxii subsp. derxii, Beijerinckiaceae
AJ563932, Beijerinckia mobilis, Beijerinckiaceae
EU401905, Beijerinckia doebereinerae, Beijerinckiaceae
FR686343, Methyloferula stellata, type.sp, Beijerinckiaceae
FR733696, Rhodoblastus acidophilus, type sp., Bradyrhizobiaceae
AM040096, Rhodoblastus sphagnicola, Bradyrhizobiaceae
FM252034, Methylovirgula ligni, type sp., Beijerinckiaceae
AJ278726, Methylocapsa acidiphila, type sp., Beijerinckiaceae
FN433469, Methylocapsa aurea, Beijerinckiaceae
EU586035, Methylorosula polaris, type sp., Beijerinckiaceae
Y17144, Methylocella palustris, type sp., Beijerinckiaceae
AJ491847, Methylocella silvestris, Beijerinckiaceae
AJ555244, Methylocella tundrae, Beijerinckiaceae

D25311, Rhodoplanes elegans, Hyphomicrobiaceae

AB087717, Rhodoplanes serenus, Hyphomicrobiaceae
FM202448, Rhodoplanes pokkaliisoli, Hyphomicrobiaceae
D25313, Rhodoplanes roseus, type sp., Hyphomicrobiaceae
 AM502287, Blastochloris gulmargensis, Hyphomicrobiaceae
AF084495, Blastochloris viridis, type sp., Hyphomicrobiaceae
D86514, Blastochloris sulfoviridis, Hyphomicrobiaceae

Methylocystaceae (7)
Y18946, Methylosinus sporium, Methylocystaceae
Y18947, Methylosinus trichosporium, type sp., Methylocystaceae
Y18945, Methylocystis parvus, type sp., Methylocystaceae
AJ458473, Methylocystis echinoides, Methylocystaceae
DQ364433, Methylocystis hirsuta, Methylocystaceae
AJ414656, Methylocystis rosea, Methylocystaceae
AM283543, Methylocystis heyeri, Methylocystaceae

Methylobacteriaceae (37)
AJ250801, Methylobacterium fujisawaense, Methylobacteriaceae
AY683045, Methylobacterium oryzae, Methylobacteriaceae
EF126746, Methylobacterium phyllosphaerae, Methylobacteriaceae
FN868949, Methylobacterium longum, Methylobacteriaceae
AB252208, Methylobacterium tardum, Methylobacteriaceae
D32227, Methylobacterium radiotolerans, Methylobacteriaceae
EF174498, Methylobacterium aerolatum, Methylobacteriaceae
AB252202, Methylobacterium persicinum, Methylobacteriaceae
AB252201, Methylobacterium komagatae, Methylobacteriaceae
AB175649, Methylobacterium brachiatum, Methylobacteriaceae
AB175636, Methylobacterium mesophilicum, Methylobacteriaceae
AB252200, Methylobacterium gregans, Methylobacteriaceae
AJ635304, Methylobacterium hispanicum, Methylobacteriaceae
AM040156, Methylobacterium adhaesivum, Methylobacteriaceae
EU912445, Methylobacterium gossipiicola, Methylobacteriaceae
EF174497, Methylobacterium iners, Methylobacteriaceae
AB607860, Methylobacterium oxalidis, Methylobacteriaceae
FJ268657, Methylobacterium bullatum, Methylobacteriaceae
FJ157976, Methylobacterium marchantiae, Methylobacteriaceae
DQ471331, Methylobacterium jeotgali, Methylobacteriaceae
FR733885, Methylobacterium cerastii, Methylobacteriaceae
AF514774, Methylobacterium podarium, Methylobacteriaceae
AB175642, Methylobacterium rhodesianum, Methylobacteriaceae
AY251818, Methylobacterium populi, Methylobacteriaceae
U58018, Methylobacterium thiocyanatum, Methylobacteriaceae
AB175647, Methylobacterium zatmanii, Methylobacteriaceae
AB175629, Methylobacterium aminovorans, Methylobacteriaceae
D32224, Methylobacterium extorquens, Methylobacteriaceae
AB175645, Methylobacterium suomiense, Methylobacteriaceae
EF015478, Methylobacterium salsuginis, Methylobacteriaceae
AB175644, Methylobacterium rhodinum, Methylobacteriaceae
AJ635303, Methylobacterium aquaticum, Methylobacteriaceae
EF426729, Methylobacterium platani, Methylobacteriaceae
AJ851087, Methylobacterium variabile, Methylobacteriaceae
AJ888239, Methylobacterium isbiliense, Methylobacteriaceae
AF220763, Methylobacterium nodulans, Methylobacteriaceae
AB175638, Methylobacterium organophilum, type sp., Methylobacteriaceae

AF288300, Bosea eneae, Bradyrhizobiaceae

AF288306, Bosea vestrisii, Bradyrhizobiaceae
AJ250796, Bosea thiooxidans, type sp., Bradyrhizobiaceae
AF273081, Bosea minatitlanensis, Bradyrhizobiaceae
AF288309, Bosea massiliensis, Bradyrhizobiaceae
EF584507, Chelatococcus daeguensis, Beijerinckiaceae
DQ322070, Chelatococcus sambhunathii, Beijerinckiaceae
AJ294349, Chelatococcus asaccharovorans, type sp., Beijerinckiaceae
AB098515, Microvirga flocculans, type sp., Methylobacteriaceae
GQ421849, Microvirga aerilata, Methylobacteriaceae
FR733708, Microvirga subterranea, type sp., Methylobacteriaceae
EU727176, Microvirga guangxiensis, Methylobacteriaceae
GQ421848, Microvirga aerophila, Methylobacteriaceae
FN430422, Camelimonas lactis, type sp., Beijerinckiaceae
FR851926, Camelimonas abortus, Beijerinckiaceae
EU878006, Salinarimonas rosea, type sp., Bradyrhizobiaceae
GU125653, Salinarimonas ramus, Bradyrhizobiaceae
DQ404188, Hansschlegelia plantiphila, type sp., Methylocystaceae
DQ916067, Hansschlegelia zhihuaiae, Methylocystaceae
FR733694, Albibacter methylovorans, type sp., Methylocystaceae
AF004844, Methylopila capsulata, type sp., Methylocystaceae
FJ502233, Methylopila jiangsuensis, Methylocystaceae
AJ535709, Angulomicrobium amanitiforme, Hyphomicrobiaceae
AJ535708, Angulomicrobium tetraedrale, type sp., Hyphomicrobiaceae
AF004845, Methylorhabdus multivorans, type sp., Hyphomicrobiaceae
AB166877, Starkeya koreensis, Xanthobacteraceae
D32247, Starkeya novella, type sp., Xanthobacteraceae
AM778407, Ancylobacter oerskovii, Xanthobacteraceae
AY056830, Ancylobacter rudongensis, Xanthobacteraceae
EU589386, Ancylobacter dichloromethanicus, Xanthobacteraceae
M62790, Ancylobacter aquaticus, type sp., Xanthobacteraceae
AY211515, Ancylobacter vacuolatus, Xanthobacteraceae
AY211516, Ancylobacter polymorphus, Xanthobacteraceae
FR733686, Aquabacter spiritensis, type sp., Hyphomicrobiaceae
X99469, Xanthobacter tagetidis, Xanthobacteraceae
AF399969, Xanthobacter aminoxidans, Xanthobacteraceae
X94199, Xanthobacter flavus, Xanthobacteraceae
X94201, Xanthobacter autotrophicus, type sp., Xanthobacteraceae
AF399970, Xanthobacter viscosus, Xanthobacteraceae
AF391130, Azorhizobium doebereinerae, Xanthobacteraceae
D11342, Azorhizobium caulinodans, type sp., Xanthobacteraceae
X94198, Xanthobacter agilis, Xanthobacteraceae
AY039817, Kaistia adipata, type sp., Rhizobiaceae
AB244762, Kaistia granuli, Rhizobiaceae
EU723082, Kaistia terrae, Rhizobiaceae
AM409363, Kaistia geumhonensis, Rhizobiaceae
EF592609, Kaistia soli, Rhizobiaceae
AM409364, Kaistia dalseonensis, Rhizobiaceae

Hyphomicrobiaceae (16)
HM037996, Pedomicrobium americanum, Hyphomicrobiaceae
X97693, Pedomicrobium australicum, Hyphomicrobiaceae
GU269548, Pedomicrobium ferrugineum, type sp., Hyphomicrobiaceae
GU269549, Pedomicrobium manganicum, Hyphomicrobiaceae
Y14313, Filomicrobium fusiforme, type sp., Hyphomicrobiaceae
EF117253, Filomicrobium insigne, Hyphomicrobiaceae
AB543807, Hyphomicrobium vulgare, type sp., Hyphomicrobiaceae
Y14305, Hyphomicrobium zavarzinii, Hyphomicrobiaceae
Y14303, Hyphomicrobium hollandicum, Hyphomicrobiaceae
Y14311, Hyphomicrobium facile subsp. tolerans, Hyphomicrobiaceae
Y14310, Hyphomicrobium facile subsp. ureaphilum, Hyphomicrobiaceae
Y14309, Hyphomicrobium facile subsp. facile, Hyphomicrobiaceae
 CP002083, Hyphomicrobium denitrificans, Hyphomicrobiaceae
AF198623, Hyphomicrobium chloromethanicum, Hyphomicrobiaceae
Y14307, Hyphomicrobium methylovorum, Hyphomicrobiaceae
AF235089, Hyphomicrobium sulfonivorans, Hyphomicrobiaceae

AB365487, Rhizomicrobium electricum, Unclassified Alphaproteobacteria

AB081581, Rhizomicrobium palustre, type sp., Unclassified Alphaproteobacteria
AF180468, Meganema perideroedes, type sp., Methylobacteriaceae
AM403172, Geminicoccus roseus, type sp., Unclassified Alphaproteobacteria
HM037994, Prosthecomicrobium hirschii, Hyphomicrobiaceae
FN666247, Rhodomicrobium vannielii, type sp., Hyphomicrobiaceae
AB127972, Pleomorphomonas koreensis, Methylocystaceae
AB159680, Pleomorphomonas oryzae, type sp., Methylocystaceae
AB017203, Prosthecomicrobium pneumaticum, type sp., Hyphomicrobiaceae
FJ594057, Agaricicola taiwanensis, type sp., Rhodobacteraceae
DQ097300, Amorphus coralli, type sp., Unclassified Rhizobiales
FJ998414, Amorphus orientalis, Unclassified Rhizobiales

Caulobacteraceae (41)
AJ227797, Brevundimonas poindexterae, Caulobacteraceae
AJ227798, Brevundimonas staleyi, Caulobacteraceae
D12785, Brevundimonas bullata, Caulobacteraceae
EF363713, Brevundimonas lenta, Caulobacteraceae
AJ227784, Brevundimonas subvibrioides, Caulobacteraceae
EU143355, Brevundimonas basaltis, Caulobacteraceae
AJ227782, Brevundimonas bacteroides, Caulobacteraceae
AJ227783, Brevundimonas variabilis, Caulobacteraceae
AJ227785, Brevundimonas alba, Caulobacteraceae
AY971368, Brevundimonas kwangchunensis, Caulobacteraceae
DQ372984, Brevundimonas aveniformis, Caulobacteraceae
FR775448, Brevundimonas faecalis, Caulobacteraceae
DQ335215, Brevundimonas terrae, Caulobacteraceae
AB021415, Brevundimonas diminuta, type sp., Caulobacteraceae
AJ227779, Brevundimonas vancanneytii, Caulobacteraceae
FJ544245, Brevundimonas naejangsanensis, Caulobacteraceae
M83810, Brevundimonas halotolerans, Caulobacteraceae
AM087199, Asticcacaulis benevestitus, Caulobacteraceae
AY500141, Asticcacaulis taihuensis, Caulobacteraceae
AJ247193, Asticcacaulis biprosthecium, Caulobacteraceae
AJ247194, Asticcacaulis excentricus, type sp., Caulobacteraceae
AJ227801, Brevundimonas mediterranea, Caulobacteraceae
DQ442520, Streptomyces longisporoflavus, Streptomycetaceae
AJ227786, Brevundimonas intermedia, Caulobacteraceae
AB071954, Brevundimonas nasdae, Caulobacteraceae
AJ227780, Brevundimonas vesicularis, Caulobacteraceae
AJ227787, Brevundimonas aurantiaca, Caulobacteraceae
AJ227759, Caulobacter fusiformis, Caulobacteraceae
AB271055, Caulobacter ginsengisoli, Caulobacteraceae
AB023427, Caulobacter segnis, Caulobacteraceae
AJ009957, Caulobacter vibrioides, type sp., Caulobacteraceae
AJ227774, Caulobacter mirabilis, Caulobacteraceae
AJ227758, Caulobacter henricii, Caulobacteraceae
AJ244650, Phenylobacterium haematophilum, Caulobacteraceae
AJ227767, Phenylobacterium conjunctum, Caulobacteraceae
AJ717391, Phenylobacterium falsum, Caulobacteraceae
Y18216, Phenylobacterium immobile, type sp., Caulobacteraceae
HM047736, Phenylobacterium muchangponense, Caulobacteraceae
AB166881, Phenylobacterium koreense, Caulobacteraceae
EU022524, Phenylobacterium composti, Caulobacteraceae
AY534887, Phenylobacterium lituiforme, Caulobacteraceae

AB175663, Pseudovibrio ascidiaceicola, Rhodobacteraceae

AB246748, Pseudovibrio japonicus, Rhodobacteraceae
AY486423, Pseudovibrio denitrificans, type sp., Rhodobacteraceae
AF513441, Nesiotobacter exalbescens, type sp., Rhodobacteraceae
D85832, Roseibium denhamense, type sp., Rhodobacteraceae
D85836, Roseibium hamelinense, Rhodobacteraceae
AJ582083, Labrenzia alexandrii, type sp., Rhodobacteraceae
AY628423, Labrenzia marina, Rhodobacteraceae
AJ878875, Labrenzia alba, Rhodobacteraceae
AAUW01000023, Labrenzia aggregata, Rhodobacteraceae
AJ400704, Pannonibacter phragmitetus, type sp., Rhodobacteraceae
EU726271, Stappia indica, Rhodobacteraceae
D88525, Stappia stellulata, type sp., Rhodobacteraceae
GQ221761, Vasilyevaea enhydra, type sp., Unclassified Rhizobiales
FJ560749, Vasilyevaea mishustinii, Unclassified Rhizobiales
EF012357, Devosia insulae, Hyphomicrobiaceae
HM474794, Devosia glacialis, Hyphomicrobiaceae
GU441678, Devosia psychrophila, Hyphomicrobiaceae
EF433462, Devosia chinhatensis, Hyphomicrobiaceae
AB361068, Devosia yakushimensis , Hyphomicrobiaceae
EF433461, Devosia crocina, Hyphomicrobiaceae
DQ303125, Devosia soli, Hyphomicrobiaceae
AJ549086, Devosia riboflavina, type sp., Hyphomicrobiaceae
AM293857, Devosia subaequoris, Hyphomicrobiaceae
AF469072, Devosia neptuniae, Hyphomicrobiaceae
AJ786801, Devosia limi, Hyphomicrobiaceae
EF433460, Devosia albogilva, Hyphomicrobiaceae
EF575560, Devosia geojensis, Hyphomicrobiaceae
EF988631, Maritalea myrionectae, type sp., Hyphomicrobiaceae
AB583774, Maritalea porphyrae, Hyphomicrobiaceae
EU255260, Maritalea mobilis, type sp., Hyphomicrobiaceae
EF211830, Cucumibacter marinus, type sp., Hyphomicrobiaceae
EU709017, Pelagibacterium halotolerans, type sp., Hyphomicrobiaceae
EF540455, Pelagibacterium luteolum, Hyphomicrobiaceae
EF465533, Pseudoxanthobacter soli, type sp., Xanthobacteraceae

Rhizobiaceae and Aurantimonadaceae (73)

U71078, Rhizobium hainanense, Rhizobiaceae
EF035074, Rhizobium multihospitium, Rhizobiaceae
U89832, Rhizobium tropici, Rhizobiaceae
EF061096, Rhizobium miluonense, Rhizobiaceae
AY626395, Rhizobium rubi, Rhizobiaceae
AY738130, Rhizobium lusitanum, Rhizobiaceae
D14501, Rhizobium rhizogenes, Rhizobiaceae
X67234, Rhizobium leucaenae, Rhizobiaceae
FJ839677, Rhizobium vallis, Rhizobiaceae
EU256434, Rhizobium tubonense, Rhizobiaceae
U29386, Rhizobium leguminosarum, type sp., Rhizobiaceae
EF141340, Rhizobium phaseoli, Rhizobiaceae
EU867317, Rhizobium endophyticum, Rhizobiaceae
EU256404, Rhizobium tibeticum, Rhizobiaceae
U28916, Rhizobium etli, Rhizobiaceae
AY509899, Rhizobium pisi, Rhizobiaceae
DQ835306, Rhizobium fabae, Rhizobiaceae
 AF364069, Rhizobium loessense, Rhizobiaceae
U89817, Rhizobium mongolense, Rhizobiaceae
AF003375, Rhizobium yanglingense, Rhizobiaceae
U86343, Rhizobium gallicum, Rhizobiaceae
AF364068, Rhizobium indigoferae, Rhizobiaceae
Y10170, Rhizobium sullae, Rhizobiaceae
AJ639832, Arthrobacter viscosus, Micrococcaceae
AM931436, Rhizobium alamii, Rhizobiaceae
DQ100063, Rhizobium mesosinicum, Rhizobiaceae
EF125187, Rhizobium borbori, Rhizobiaceae
EU056823, Rhizobium oryzae, Rhizobiaceae
DQ454123, Rhizobium pseudoryzae, Rhizobiaceae
EU556969, Rhizobium petrolearium, Rhizobiaceae
EF363715, Rhizobium soli, Rhizobiaceae
D11343, Rhizobium galegae, Rhizobiaceae
GU128881, Rhizobium vignae, Rhizobiaceae
EU074168, Rhizobium alkalisoli, Rhizobiaceae
DQ855276, Rhizobium cellulosilyticum, Rhizobiaceae
AF025852, Rhizobium huautlense, Rhizobiaceae

Aurantimonadaceae (7)
DQ372921, Aureimonas altamirensis, type sp., Aurantimonadaceae
EF373540, Aureimonas frigidaquae, Aurantimonadaceae
AJ786361, Aurantimonas coralicida, type sp., Aurantimonadaceae
U53824, Aurantimonas manganoxydans, Aurantimonadaceae
DQ883810, Aureimonas ureilytica, Aurantimonadaceae
AY178860, Fulvimarina pelagi, type sp., Aurantimonadaceae
AY649762, Martelella mediterranea, type sp., Aurantimonadaceae

Y17047, Rhizobium undicola, Rhizobiaceae

HM776997, Rhizobium taibaishanense, Rhizobiaceae
U45329, Rhizobium vitis, Rhizobiaceae
Z30542, Rhizobium larrymoorei, Rhizobiaceae
FJ969841, Rhizobium pusense, Rhizobiaceae
EU401907, Beijerinckia fluminensis, Beijerinckiaceae
AB247615, Rhizobium radiobacter, Rhizobiaceae
HQ823551, Rhizobium skierniewicense, Rhizobiaceae
X73041, Rhizobium aggregatum, Rhizobiaceae
X73042, Blastobacter capsulatus, Bradyrhizobiaceae
GU322905, Rhizobium halophytocola, Rhizobiaceae
EU781656, Rhizobium rosettiformans, Rhizobiaceae
EF440185, Rhizobium selenitireducens, Rhizobiaceae
AY341343, Rhizobium daejeonense, Rhizobiaceae
U86344, Rhizobium giardinii, Rhizobiaceae
GU565534, Rhizobium herbae, Rhizobiaceae
X68390, Ensifer saheli, Rhizobiaceae
GU593061, Ensifer sojae, Rhizobiaceae
AY034028, Ensifer kummerowiae, Rhizobiaceae
AM181747, Ensifer kostiensis, Rhizobiaceae
X67231, Ensifer fredii, Rhizobiaceae
AF506513, Sinorhizobium americanum, Rhizobiaceae
D14509, Ensifer meliloti, Rhizobiaceae
AY500254, Ensifer numidicus , Rhizobiaceae
L39882, Ensifer medicae, Rhizobiaceae
Z78204, Ensifer arboris, Rhizobiaceae
X68388, Ensifer terangae, Rhizobiaceae
AY500255, Ensifer garamanticus , Rhizobiaceae
DQ411930, Ensifer mexicanus, Rhizobiaceae
AM181733, Ensifer adhaerens, type sp., Rhizobiaceae

GQ241319, Shinella daejeonensis, Rhizobiaceae

AB285481, Shinella yambaruensis, Rhizobiaceae
FM177879, Shinella fusca, Rhizobiaceae
AB187585, Shinella granuli, type sp., Rhizobiaceae
AB238789, Shinella zoogloeoides, Rhizobiaceae
EF070131, Shinella kummerowiae, Rhizobiaceae

Phyllobacteriaceae (52)
AY636000, Phyllobacterium catacumbae, Phyllobacteriaceae
AY785325, Phyllobacterium ifriqiyense, Phyllobacteriaceae
AY786080, Phyllobacterium trifolii, Phyllobacteriaceae
AY785320, Phyllobacterium bourgognense, Phyllobacteriaceae
AY785319, Phyllobacterium brassicacearum, Phyllobacteriaceae
AY785315, Phyllobacterium myrsinacearum, type sp., Phyllobacteriaceae
AJ968695, Phyllobacterium leguminum, Phyllobacteriaceae
U07934, Mesorhizobium ciceri, Phyllobacteriaceae
X67229, Mesorhizobium loti, type sp., Phyllobacteriaceae
EU074203, Mesorhizobium shangrilense, Phyllobacteriaceae
AY601516, Mesorhizobium australicum, Phyllobacteriaceae
AJ011760, Aminobacter aganoensis, Phyllobacteriaceae
AJ011761, Aminobacter niigataensis, Phyllobacteriaceae
AF034798, Aminobacter ciceronei, Phyllobacteriaceae
AJ011759, Aminobacter aminovorans, type sp., Phyllobacteriaceae
AF107722, Aminobacter lissarensis, Phyllobacteriaceae
D88524, Ahrensia kielensis, type sp., Rhodobacteraceae
ABIA02000018, Hoeflea phototrophica, Phyllobacteriaceae
AY598817, Hoeflea marina, type sp., Phyllobacteriaceae
DQ364238, Hoeflea anabaenae, Phyllobacteriaceae
AJ786600, Hoeflea alexandrii, Phyllobacteriaceae
AF534573, Nitratireductor aquibiodomus, type sp., Phyllobacteriaceae
AM498744, Nitratireductor kimnyeongensis, Phyllobacteriaceae
HQ176467, Nitratireductor aquimarinus, Phyllobacteriaceae
EU143347, Nitratireductor basaltis, Phyllobacteriaceae
DQ659453, Nitratireductor pacificus, Phyllobacteriaceae
GU447302, Nitratireductor indicus, Phyllobacteriaceae
EF457243, Chelativorans multitrophicus, type sp., Phyllobacteriaceae
EF457242, Chelativorans oligotrophicus, Phyllobacteriaceae
EU169578, Mesorhizobium alhagi, Phyllobacteriaceae
EU169581, Mesorhizobium camelthorni, Phyllobacteriaceae
D32248, Pseudaminobacter defluvii, Phyllobacteriaceae
AF072542, Pseudaminobacter salicylatoxidans, type sp., Phyllobacteriaceae
Y15403, Aquamicrobium defluvii, type sp., Phyllobacteriaceae
AJ132378, Aquamicrobium lusatiense, Phyllobacteriaceae
FM210786, Aquamicrobium aerolatum, Phyllobacteriaceae
AJ278249, Mesorhizobium chacoense, Phyllobacteriaceae
DQ100066, Mesorhizobium albiziae, Phyllobacteriaceae
EF149003, Mesorhizobium caraganae, Phyllobacteriaceae
EF035058, Mesorhizobium tarimense, Phyllobacteriaceae
EF035064, Mesorhizobium gobiense, Phyllobacteriaceae
AM930381, Mesorhizobium metallidurans, Phyllobacteriaceae
AF041447, Mesorhizobium tianshanense, Phyllobacteriaceae
AM181745, Mesorhizobium mediterraneum, Phyllobacteriaceae
AF508208, Mesorhizobium temperatum, Phyllobacteriaceae
EU849582, Mesorhizobium robiniae, Phyllobacteriaceae
AY601515, Mesorhizobium opportunistum, Phyllobacteriaceae
 D13431, Mesorhizobium huakuii, Phyllobacteriaceae
AF041442, Mesorhizobium amorphae, Phyllobacteriaceae
AF508207, Mesorhizobium septentrionale, Phyllobacteriaceae
Y14158, Mesorhizobium plurifarium, Phyllobacteriaceae
AJ864462, Mesorhizobium thiogangeticum, Phyllobacteriaceae

D12786, Mycoplana dimorpha, type sp., Brucellaceae

D13944, Mycoplana ramosa, Brucellaceae

Brucellaceae (33)
AM180484, Pseudochrobactrum saccharolyticum, Brucellaceae
FM209496, Pseudochrobactrum lubricantis, Brucellaceae
AM180485, Pseudochrobactrum asaccharolyticum, type sp., Brucellaceae
AM263420, Pseudochrobactrum kiredjianiae, Brucellaceae
AB369864, Paenochrobactrum glaciei, Brucellaceae
FN391023, Paenochrobactrum gallinarii, type sp., Brucellaceae
AJ519939, Ochrobactrum gallinifaecis, Brucellaceae
AM041247, Ochrobactrum oryzae, Brucellaceae
DQ365921, Ochrobactrum pseudintermedium, Brucellaceae
DQ647056, Ochrobactrum ciceri, Brucellaceae
HQ171203, Ochrobactrum daejeonense, Brucellaceae
U70978, Ochrobactrum intermedium, Brucellaceae
EU053207, Brucella inopinata, Brucellaceae
AM392286, Brucella microti, Brucellaceae
AY594216, Brucella neotomae, Brucellaceae
AY594215, Brucella melitensis , type sp., Brucellaceae
L26168, Brucella ovis, Brucellaceae
AM158979, Brucella abortus, Brucellaceae
AM158982, Brucella ceti, Brucellaceae
L37584, Brucella canis, Brucellaceae
AM158980, Brucella suis, Brucellaceae
AM158981, Brucella pinnipedialis, Brucellaceae
AY776289, Ochrobactrum cytisi, Brucellaceae
AY457038, Ochrobactrum lupini, Brucellaceae
AJ242584, Ochrobactrum tritici, Brucellaceae
CP000758, Ochrobactrum anthropi, type sp., Brucellaceae
AM490609, Ochrobactrum pituitosum, Brucellaceae
AM490632, Ochrobactrum rhizosphaerae, Brucellaceae
AM490617, Ochrobactrum thiophenivorans, Brucellaceae
AJ242581, Ochrobactrum grignonense, Brucellaceae
AM422371, Ochrobactrum pseudogrignonense, Brucellaceae
AM422370, Ochrobactrum haematophilum, Brucellaceae
FR668302, Ochrobactrum pecoris, Brucellaceae

Bartonellaceae (24)
AY254309, Bartonella chomelii, Bartonellaceae
AJ278187, Bartonella schoenbuchensis, Bartonellaceae
AF293391, Bartonella bovis, Bartonellaceae
AF293389, Bartonella capreoli, Bartonellaceae
BX897699, Bartonella henselae, Bartonellaceae
AF076237, Bartonella koehlerae, Bartonellaceae
M65249, Bartonella bacilliformis, type sp., Bartonellaceae
M73228, Bartonella quintana, Bartonellaceae
Z31351, Bartonella doshiae, Bartonellaceae
EU111754, Bartonella queenslandensis, Bartonellaceae
EU111749, Bartonella rattaustraliani, Bartonellaceae
L01259, Bartonella vinsonii subsp. vinsonii, Bartonellaceae
EU111759, Bartonella coopersplainsensis, Bartonellaceae
AB440632, Bartonella japonica, Bartonellaceae
AB440636, Bartonella silvatica, Bartonellaceae
L35052, Bartonella vinsonii subsp. berkhoffii, Bartonellaceae
Z31349, Bartonella grahamii, Bartonellaceae
L01260, Bartonella elizabethae, Bartonellaceae
AJ003070, Bartonella tribocorum, Bartonellaceae
AJ002139, Bartonella alsatica, Bartonellaceae
AF204274, Bartonella birtlesii, Bartonellaceae
Z31350, Bartonella taylorii, Bartonellaceae
X89208, Bartonella clarridgeiae, Bartonellaceae
DQ683196, Bartonella rochalimae, Bartonellaceae

EF532794, Daeguia caeni, type sp., Brucellaceae

Cohaesibacteraceae (2)
DQ386307, Cohaesibacter gelatinilyticus, type sp., Cohaesibacteraceae
GQ200200, Cohaesibacter marisflavi, Cohaesibacteraceae

GQ272328, Breoghania corrubedonensis, type sp., Unclassified Alphaproteobacteria

Rhodobiaceae (9)
D30790, Afifella marina, type sp., Rhodobiaceae
AB087720, Rhodopseudomonas julia, Bradyrhizobiaceae
EU445271, Afifella pfennigii, Rhodobiaceae
FR733679, Dichotomicrobium thermohalophilum, type sp., Hyphomicrobiaceae
AM712634, Anderseniella baltica, type sp., Rhodobiaceae
AM180706, Rhodobium gokarnense, Rhodobiaceae
D30792, Rhodobium orientis, type sp., Rhodobiaceae
GU187912, Tepidamorphus gemmatus, type sp., Rhodobiaceae
FN297835, Lutibaculum baratangense, type sp., Rhodobiaceae

FJ560750, Bauldia consociata, Unclassified Rhizobiales

GQ221764, Bauldia litoralis, type sp., Unclassified Rhizobiales

Rhodobacteraceae (229)
AB601471, Roseibacterium elongatum, type sp., Rhodobacteraceae
AB302386, Tranquillimonas alkanivorans, type sp., Rhodobacteraceae
AJ534211, Dinoroseobacter shibae, type sp., Rhodobacteraceae
DQ514326, Maribius pelagius, Rhodobacteraceae
AY906863, Maribius salinus, type sp., Rhodobacteraceae
FJ230842, Hwanghaeicola aestuarii, type sp., Rhodobacteraceae
DQ915443, Maritimibacter alkaliphilus, type sp., Rhodobacteraceae
HM997022, Celeribacter baekdonensis, Rhodobacteraceae
FJ436725, Huaishuia halophila, type sp., Rhodobacteraceae
FJ535354, Celeribacter neptunius, type sp., Rhodobacteraceae
AB564595, Vadicella arenosi, type sp., Rhodobacteraceae
DQ675021, Pseudoruegeria aquimaris, type sp., Rhodobacteraceae
FJ374173, Pseudoruegeria lutimaris, Rhodobacteraceae
AB558927, Pacificibacter maritimus, type sp., Rhodobacteraceae
GQ243422, Roseovarius marinus, Rhodobacteraceae
FJ882052, Planktotalea frisia, type sp., Rhodobacteraceae
JN021667, Litoreibacter meonggei, Rhodobacteraceae
AB518881, Litoreibacter albidus, type sp., Rhodobacteraceae
AB518880, Litoreibacter janthinus, Rhodobacteraceae
EU342372, Litoreibacter arenae, Rhodobacteraceae
AJ631302, Thalassobacter stenotrophicus, type sp., Rhodobacteraceae
AF114484, Roseovarius crassostreae, Rhodobacteraceae
HQ852039, Roseovarius halocynthiae, Rhodobacteraceae
AJ438157, Jannaschia helgolandensis, type sp., Rhodobacteraceae
 AJ748747, Jannaschia rubra, Rhodobacteraceae
EU156067, Jannaschia seohaensis, Rhodobacteraceae
AY906862, Jannaschia seosinensis, Rhodobacteraceae
DQ643999, Jannaschia pohangensis, Rhodobacteraceae
EF202612, Jannaschia donghaensis, Rhodobacteraceae
FJ638616, Hasllibacter halocynthiae, type sp., Rhodobacteraceae
EU156066, Roseovarius aestuarii, Rhodobacteraceae
AF098495, Roseovarius nubinhibens, Rhodobacteraceae
AJ534215, Roseovarius mucosus, Rhodobacteraceae
Y11551, Roseovarius tolerans, type sp., Rhodobacteraceae
EF192392, Pelagicola litoralis, type sp., Rhodobacteraceae
FJ403243, Roseovarius nanhaiticus, Rhodobacteraceae
EF202613, Loktanella maricola, Rhodobacteraceae
AY682199, Loktanella rosea, Rhodobacteraceae
DQ533556, Loktanella tamlensis, Rhodobacteraceae
AB576006, Poseidonocella sedimentorum, Rhodobacteraceae
DQ344498, Loktanella koreensis, Rhodobacteraceae
Y13155, Sulfitobacter pontiacus, type sp., Rhodobacteraceae
DQ097527, Sulfitobacter litoralis, Rhodobacteraceae
DQ683726, Sulfitobacter marinus, Rhodobacteraceae
Y16425, Sulfitobacter brevis, Rhodobacteraceae
Y17387, Sulfitobacter mediterraneus, Rhodobacteraceae
AY180103, Sulfitobacter delicatus, Rhodobacteraceae
AY180102, Sulfitobacter dubius, Rhodobacteraceae
AJ550939, Oceanibulbus indolifex, type sp., Rhodobacteraceae
EF202614, Sulfitobacter donghicola, Rhodobacteraceae
Y16427, Sulfitobacter guttiformis, Rhodobacteraceae
L01784, Roseobacter denitrificans, Rhodobacteraceae
X78312, Roseobacter litoralis, type sp., Rhodobacteraceae
FJ436732, Lentibacter algarum, type sp., Rhodobacteraceae
AJ748748, Nereida ignava, type sp., Rhodobacteraceae
AB193438, Tateyamaria omphalii, type sp., Rhodobacteraceae
AJ968651, Tateyamaria pelophila, Rhodobacteraceae
EU734592, Mameliella alba, type sp., Rhodobacteraceae
U58356, Sagittula stellata, type sp., Rhodobacteraceae
Y11552, Antarctobacter heliothermus, type sp., Rhodobacteraceae
EF211829, Ponticoccus litoralis, type sp., Rhodobacteraceae
AB302370, Tropicibacter naphthalenivorans, type sp., Rhodobacteraceae
FR727679, Tropicibacter multivorans, Rhodobacteraceae
U14583, Octadecabacter antarcticus, Rhodobacteraceae
U73725, Octadecabacter arcticus, type sp., Rhodobacteraceae
HM748766, Thalassobius maritimus, Rhodobacteraceae
AB246747, Loktanella atrilutea, Rhodobacteraceae
AJ582225, Loktanella fryxellensis, Rhodobacteraceae
AJ440997, Loktanella salsilacus, type sp., Rhodobacteraceae
AY600300, Loktanella hongkongensis, Rhodobacteraceae
AM983542, Loktanella pyoseonensis, Rhodobacteraceae
AY682198, Loktanella agnita, Rhodobacteraceae
AJ582226, Loktanella vestfoldensis, Rhodobacteraceae
EU221274, Seohaeicola saemankumensis, type sp., Rhodobacteraceae
GQ232737, Litorimicrobium taeanense, type sp., Rhodobacteraceae
FJ232451, Leisingera nanhaiensis, Rhodobacteraceae
DQ514304, Phaeobacter arcticus, Rhodobacteraceae
AY177712, Phaeobacter inhibens, Rhodobacteraceae
Y13244, Phaeobacter gallaeciensis, type sp., Rhodobacteraceae
D88526, Ruegeria atlantica, type sp., Rhodobacteraceae
U77644, Silicibacter lacuscaerulensis, type sp., Rhodobacteraceae
AF098491, Silicibacter pomeroyi, Rhodobacteraceae
AB255401, Ruegeria mobilis, Rhodobacteraceae
AM905330, Ruegeria scottomollicae, Rhodobacteraceae
GU057915, Ruegeria faecimaris, Rhodobacteraceae
HQ852038, Ruegeria halocynthiae, Rhodobacteraceae
FJ265707, Salinihabitans flavidus, type sp., Rhodobacteraceae
EU878003, Sediminimonas qiaohouensis, type sp., Rhodobacteraceae
AY962292, Shimia marina, type sp., Rhodobacteraceae
FJ976449, Shimia isoporae, Rhodobacteraceae
AM904562, Nautella italica, type sp., Rhodobacteraceae
AM900415, Leisingera aquimarina, Rhodobacteraceae
AY005463, Leisingera methylohalidivorans, type sp., Rhodobacteraceae
AM943630, Phaeobacter caeruleus, Rhodobacteraceae
DQ981486, Phaeobacter daeponensis, Rhodobacteraceae
X78315, Marinovum algicola, type sp., Rhodobacteraceae
AY442178, Thalassobius aestuarii, Rhodobacteraceae
AJ878874, Thalassobius mediterraneus, type sp., Rhodobacteraceae
D88523, Thalassobius gelatinovorus, Rhodobacteraceae
DQ397336, Thalassococcus halodurans, type sp., Rhodobacteraceae
EU928765, Citreicella marina, Rhodobacteraceae
AY639887, Citreicella thiooxidans, type sp., Rhodobacteraceae
FJ230833, Citreicella aestuarii, Rhodobacteraceae
AY926462, Palleronia marisminoris, type sp., Rhodobacteraceae
AY527274, Salipiger mucosus, type sp., Rhodobacteraceae
DQ178660, Pelagibaca bermudensis, type sp., Rhodobacteraceae
AB550558, Primorskyibacter sedentarius, type sp., Rhodobacteraceae
EU512919, Marivita cryptomonadis, type sp., Rhodobacteraceae
JF260872, Marivita hallyeonensis, Rhodobacteraceae
EU512918, Marivita litorea, Rhodobacteraceae
FJ467624, Marivita byunsanensis, type sp., Rhodobacteraceae
AY424898, Oceanicola batsensis, Rhodobacteraceae
DQ414420, Oceanicola nanhaiensis, Rhodobacteraceae
EU581832, Oceanicola nitratireducens, Rhodobacteraceae
DQ822569, Oceanicola marinus, Rhodobacteraceae
AJ505788, Pontibaca methylaminivorans, type sp., Rhodobacteraceae
DQ667965, Donghicola eburneus, type sp., Rhodobacteraceae
AB302379, Tropicimonas isoalkanivorans, type sp., Rhodobacteraceae
HQ340608, Tropicimonas aquimaris, Rhodobacteraceae
EU336981, Lutimaribacter saemankumensis, type sp., Rhodobacteraceae
DQ659449, Oceanicola pacificus, Rhodobacteraceae
FJ872535, Ruegeria marina, Rhodobacteraceae
AY962295, Citreimonas salinaria, type sp., Rhodobacteraceae
DQ120728, Donghicola xiamenensis, Rhodobacteraceae
EU431217, Roseovarius halotolerans, Rhodobacteraceae
DQ120726, Roseovarius pacificus, Rhodobacteraceae
EU742628, Roseovarius indicus, Rhodobacteraceae
D85829, Roseivivax halodurans, type sp., Rhodobacteraceae
D85831, Roseivivax halotolerans, Rhodobacteraceae
FJ593905, Roseivivax isoporae, Rhodobacteraceae
HQ615878, Roseivivax sediminis, Rhodobacteraceae
FJ875966, Roseivivax lentus, Rhodobacteraceae
AJ877265, Yangia pacifica, type sp., Rhodobacteraceae
AB576005, Poseidonocella pacifica, type sp., Rhodobacteraceae
AF136850, Ketogulonicigenium robustum, Rhodobacteraceae
AF136849, Ketogulonicigenium vulgare, type sp., Rhodobacteraceae
AY424896, Oceanicola granulosus, type sp., Rhodobacteraceae
 AJ605747, Roseisalinus antarcticus, type sp., Rhodobacteraceae
EU338486, Rubellimicrobium aerolatum, Rhodobacteraceae
EF547368, Rubellimicrobium mesophilum, Rhodobacteraceae
AJ844281, Rubellimicrobium thermophilum, type sp., Rhodobacteraceae
DQ640643, Wenxinia marina, type sp., Rhodobacteraceae
AJ315682, Roseicyclus mahoneyensis, type sp., Rhodobacteraceae
AJ864469, Paracoccus bengalensis, Rhodobacteraceae
Y16933, Paracoccus pantotrophus, Rhodobacteraceae
AY014174, Paracoccus versutus, Rhodobacteraceae
AF250334, Paracoccus methylutens, Rhodobacteraceae
DQ512861, Paracoccus sulfuroxidans, Rhodobacteraceae
DQ423482, Paracoccus halophilus, Rhodobacteraceae
GU129567, Paracoccus sphaerophysae, Rhodobacteraceae
AB185957, Paracoccus marinus, Rhodobacteraceae
Y13827, Paracoccus alkenifer, Rhodobacteraceae
AY014175, Paracoccus solventivorans, Rhodobacteraceae
D32241, Paracoccus kocurii, Rhodobacteraceae
AB187584, Paracoccus koreensis, Rhodobacteraceae
FJ842690, Paracoccus niistensis, Rhodobacteraceae
EU660389, Paracoccus chinensis, Rhodobacteraceae
AY014177, Paracoccus alcaliphilus, Rhodobacteraceae
GQ281379, Paracoccus stylophorae, Rhodobacteraceae
D32240, Paracoccus aminovorans, Rhodobacteraceae
AY014176, Paracoccus aminophilus, Rhodobacteraceae
Y16927, Paracoccus denitrificans, type sp., Rhodobacteraceae
D32242, Paracoccus thiocyanatus, Rhodobacteraceae
AY014173, Paracoccus yeei, Rhodobacteraceae
AF250332, Paracoccus kondratievae, Rhodobacteraceae
GQ250442, Paracoccus caeni, Rhodobacteraceae
AF461158, Paracoccus zeaxanthinifaciens, Rhodobacteraceae
DQ342239, Paracoccus homiensis, Rhodobacteraceae
FJ593906, Paracoccus isoporae, Rhodobacteraceae
GQ260189, Paracoccus fistulariae, Rhodobacteraceae
DQ923133, Paracoccus saliphilus, Rhodobacteraceae
AF030436, Methylarcula marina, type sp., Rhodobacteraceae
AF030437, Methylarcula terricola, Rhodobacteraceae
AB006899, Paracoccus carotinifaciens, Rhodobacteraceae
Y12703, Paracoccus marcusii, Rhodobacteraceae
AY189743, Paracoccus haeundaensis, Rhodobacteraceae
AJ428275, Paracoccus seriniphilus, Rhodobacteraceae
EF660757, Paracoccus aestuarii, Rhodobacteraceae
AM408117, Rhodobacter vinaykumarii, Rhodobacteraceae
D88522, Pseudorhodobacter ferrugineus, type sp., Rhodobacteraceae
GU086365, Pseudorhodobacter aquimaris, Rhodobacteraceae
AM690348, Rhodobacter ovatus, Rhodobacteraceae
D70846, Rhodobacter azotoformans, Rhodobacteraceae
AM398152, Rhodobacter johrii, Rhodobacteraceae
AM421024, Rhodobacter megalophilus, Rhodobacteraceae
X53853, Rhodobacter sphaeroides, Rhodobacteraceae
EU289803, Catellibacterium nanjingense, Rhodobacteraceae
FJ386516, Catellibacterium caeni, Rhodobacteraceae
EU313813, Catellibacterium aquatile, Rhodobacteraceae
FR733676, Gemmobacter aquatilis, type sp., Rhodobacteraceae
AM399030, Catellibacterium changlense, Rhodobacteraceae
AB101543, Catellibacterium nectariphilum, type sp., Rhodobacteraceae
DQ342322, Rhodobacter blasticus, Rhodobacteraceae
D16428, Rhodobacter capsulatus, type sp., Rhodobacteraceae
AF452106, Haematobacter massiliensis, Rhodobacteraceae
DQ342315, Haematobacter missouriensis, type sp., Rhodobacteraceae
AM748926, Rhodobacter aestuarii, Rhodobacteraceae
AM745438, Rhodobacter maris, Rhodobacteraceae
AY656719, Thioclava pacifica, type sp., Rhodobacteraceae
EF554833, Rhodobaca barguzinensis, Rhodobacteraceae
AF248638, Rhodobaca bogoriensis, type sp., Rhodobacteraceae
AJ605746, Roseibaca ekhonensis, type sp., Rhodobacteraceae
DQ659236, Roseinatronobacter monicus, Rhodobacteraceae
AF249749, Roseinatronobacter thiooxidans, type sp., Rhodobacteraceae
FJ196006, Roseicitreum antarcticum, type sp., Rhodobacteraceae
D16421, Rhodobacter veldkampii, Rhodobacteraceae
D16418, Rhodovulum adriaticum, Rhodobacteraceae
Y15012, Rhodovulum robiginosum, Rhodobacteraceae
FN669139, Rhodovulum phaeolacus, Rhodobacteraceae
AM180953, Rhodovulum imhoffii, Rhodobacteraceae
Y15011, Rhodovulum iodosum, Rhodobacteraceae
AJ891122, Rhodovulum marinum, Rhodobacteraceae
AM748927, Rhodovulum kholense, Rhodobacteraceae
AM180707, Rhodovulum visakhapatnamense, Rhodobacteraceae
D16423, Rhodovulum sulfidophilum, type sp., Rhodobacteraceae
EU287912, Jhaorihella thermophila, type sp., Rhodobacteraceae
EU741680, Rhodovulum steppense, Rhodobacteraceae
D16419, Rhodovulum strictum, Rhodobacteraceae
AM921780, Rhodovulum lacipunicei, Rhodobacteraceae
D16426, Rhodovulum euryhalinum, Rhodobacteraceae
AF465833, Albidovulum inexpectatum, type sp., Rhodobacteraceae
HQ709061, Albidovulum xiamenense, Rhodobacteraceae
DQ280370, Albimonas donghaensis, type sp., Rhodobacteraceae
U88042, Amaricoccus macauensis, Rhodobacteraceae
U88043, Amaricoccus veronensis, Rhodobacteraceae
U88044, Amaricoccus tamworthensis, Rhodobacteraceae
U88041, Amaricoccus kaplicensis, type sp., Rhodobacteraceae
D85834, Rubrimonas cliftonensis, type sp., Rhodobacteraceae
EU857676, Rubribacterium polymorphum, Rhodobacteraceae

AY387398, Parvibaculum lavamentivorans, type sp., Rhodobiaceae

FJ182044, Parvibaculum indicum, Rhodobiaceae

Hyphomonadaceae (24)
FJ230835, Henriciella litoralis, Hyphomonadaceae
EF660760, Henriciella marina, type sp., Hyphomonadaceae
EU819081, Henriciella aquimarina, Hyphomonadaceae
FM202497, Ponticaulis koreensis, type sp., Hyphomonadaceae
CP000158, Hyphomonas neptunium , Hyphomonadaceae
AF082795, Hyphomonas rosenbergii, Hyphomonadaceae
AF082794, Hyphomonas hirschiana, Hyphomonadaceae
AJ227813, Hyphomonas polymorpha, type sp., Hyphomonadaceae
AF082797, Hyphomonas oceanitis, Hyphomonadaceae
AF082791, Hyphomonas johnsonii, Hyphomonadaceae
AF082790, Hyphomonas adhaerens, Hyphomonadaceae
AJ227814, Hyphomonas jannaschiana, Hyphomonadaceae
AJ421782, Hirschia baltica, type sp., Hyphomonadaceae
FM202386, Hirschia maritima, Hyphomonadaceae
AY576758, Hellea balneolensis, type sp., Hyphomonadaceae
FJ230838, Litorimonas taeanensis, type sp., Hyphomonadaceae
EF495229, Robiginitomaculum antarcticum, type sp., Hyphomonadaceae
AJ227806, Maricaulis salignorans, Hyphomonadaceae
 AJ227804, Maricaulis washingtonensis, Hyphomonadaceae
AJ227802, Maricaulis maris, type sp., Hyphomonadaceae
AJ227808, Maricaulis parjimensis, Hyphomonadaceae
AJ301667, Maricaulis virginensis, Hyphomonadaceae
AJ309862, Oceanicaulis alexandrii, type sp., Hyphomonadaceae
AJ578476, Woodsholea maritima, type sp., Hyphomonadaceae

Parvularculales (2)
AF544015, Parvularcula bermudensis, type sp., Parvularculaceae
EU346850, Parvularcula lutaonensis, Parvularculaceae

AB617575, Rhodoligotrophos appendicifer, type sp., Rhodobiaceae

Sphingomonadales (160)

Sphingomonadaceae (134)
EU707560, Sphingomonas oryziterrae, Sphingomonadaceae
EU564841, Sphingomicrobium lutaoense, type sp., Sphingomonadaceae
AB264131, Sphingomonas jaspsi, Sphingomonadaceae
AB277583, Sphingomonas astaxanthinifaciens, Sphingomonadaceae
AY769083, Sphingomonas kaistensis, Sphingomonadaceae
Y10678, Sandaracinobacter sibiricus, type sp., Sphingomonadaceae
AY902680, Sandarakinorhabdus limnophila, type sp., Sphingomonadaceae
EU682685, Sphingomonas changbaiensis, Sphingomonadaceae
HQ224549, Sphingomonas jejuensis, Sphingomonadaceae
AB018439, Sphingomonas oligophenolica, Sphingomonadaceae
AB021370, Sphingomonas echinoides, Sphingomonadaceae
GQ253122, Sphingomonas glacialis, Sphingomonadaceae
GQ161989, Sphingomonas alpina, Sphingomonadaceae
AJ575817, Sphingomonas abaci, Sphingomonadaceae
EU707561, Sphingomonas jinjuensis, Sphingomonadaceae
AJ227812, Sphingomonas leidyi, Caulobacteraceae
AF131295, Sphingomonas aquatilis, Sphingomonadaceae
AB055863, Sphingomonas melonis, Sphingomonadaceae
AJ429236, Sphingomonas aurantiaca, Sphingomonadaceae
AJ429239, Sphingomonas faeni, Sphingomonadaceae
AJ429240, Sphingomonas aerolata, Sphingomonadaceae
FJ834325, Sphingomonas rubra, Sphingomonadaceae
EF363714, Sphingomonas insulae, Sphingomonadaceae
Y09637, Sphingomonas pruni, Sphingomonadaceae
Y09638, Sphingomonas mali, Sphingomonadaceae
EF660755, Sphingomonas aestuarii, Sphingomonadaceae
AB166883, Sphingomonas soli, Sphingomonadaceae
Y09639, Sphingomonas asaccharolytica, Sphingomonadaceae
DQ178975, Sphingomonas dokdonensis, Sphingomonadaceae
AM229669, Sphingomonas mucosissima, Sphingomonadaceae
AF131296, Sphingomonas koreensis, Sphingomonadaceae
AB033947, Sphingomonas azotifigens, Sphingomonadaceae
X97776, Sphingomonas trueperi, Sphingomonadaceae
AJ243751, Sphingomonas pituitosa, Sphingomonadaceae
AB428568, Sphingomonas japonica, Sphingomonadaceae
FJ754464, Sphingomonas xinjiangensis, Sphingomonadaceae
AY453855, Sphingomonas phyllosphaerae, Sphingomonadaceae
HM629444, Sphingomonas endophytica, Sphingomonadaceae
AY894691, Sphingomonas yunnanensis, Sphingomonadaceae
HM204925, Sphingomonas ginsenosidimutans, Sphingomonadaceae
EF467848, Sphingomonas polyaromaticivorans, Sphingomonadaceae
U37337, Sphingomonas paucimobilis, type sp., Sphingomonadaceae
D84529, Sphingomonas sanguinis, Sphingomonadaceae
AM412238, Sphingomonas pseudosanguinis, Sphingomonadaceae
D84520, Sphingomonas roseiflava, Sphingomonadaceae
AB071955, Sphingomonas yabuuchiae, Sphingomonadaceae
D13724, Sphingomonas parapaucimobilis, Sphingomonadaceae
AJ871435, Sphingomonas desiccabilis, Sphingomonadaceae
AB248285, Sphingomonas molluscorum, Sphingomonadaceae
AJ575818, Sphingomonas panni, Sphingomonadaceae
FJ194436, Sphingomonas hankookensis, Sphingomonadaceae
DQ789172, Sphingomonas sanxanigenens, Sphingomonadaceae
AJ009706, Sphingomonas fennica, Sphingomonadaceae
HM193517, Sphingomonas formosensis, Sphingomonadaceae
EF530202, Sphingomonas histidinilytica, Sphingomonadaceae
AB021492, Sphingomonas wittichii, Sphingomonadaceae
X94101, Sphingomonas haloaromaticamans, Sphingomonadaceae
AF281032, Zymomonas mobilis subsp. pomaceae, Sphingomonadaceae
AF281031, Zymomonas mobilis subsp. mobilis, type sp., Sphingomonadaceae
EU581829, Stakelama pacifica, type sp., Sphingomonadaceae
AB084247, Sphingosinicella microcystinivorans, type sp., Sphingomonadaceae
AY950663, Sphingosinicella xenopeptidilytica, Sphingomonadaceae
DQ087403, Sphingosinicella soli, Sphingomonadaceae
FJ442859, Sphingosinicella vermicomposti , Sphingomonadaceae
EF465534, Sphingobium rhizovicinum, Sphingomonadaceae
EF534725, Sphingobium lucknowense, Sphingomonadaceae
AY519129, Sphingobium indicum, Sphingomonadaceae
EF190507, Sphingobium chinhatense, Sphingomonadaceae
AY519130, Sphingobium francense, Sphingomonadaceae
AF039168, Sphingobium japonicum, Sphingomonadaceae
AF159257, Sphingobium chungbukense, Sphingomonadaceae
X87161, Sphingomonas chlorophenolica, Sphingomonadaceae
AM998824, Sphingobium vermicomposti, Sphingomonadaceae
DQ092757, Sphingobium fuliginis, Sphingomonadaceae
AB022428, Sphingomonas herbicidovorans, Sphingomonadaceae
EU781657, Sphingobium quisquiliarum, Sphingomonadaceae
AB047364, Sphingobium amiense, Sphingomonadaceae
EU009209, Sphingobium scionense, Sphingomonadaceae
D13728, Sphingomonas yanoikuyae, Sphingomonadaceae
AB040739, Sphingobium cloacae, Sphingomonadaceae
EF207155, Sphingobium ummariense, Sphingomonadaceae
FJ373058, Sphingobium faniae, Sphingomonadaceae
FJ686047, Sphingobium wenxiniae, Sphingomonadaceae
AB021416, Sphingobium abikonense, Sphingomonadaceae
EU675846, Sphingobium lactosutens, Sphingomonadaceae
AM489507, Sphingobium olei, Sphingomonadaceae
AM181012, Sphingobium aromaticiconvertens, Sphingomonadaceae
X94098, Sphingobium xenophagum, Sphingomonadaceae
EU095328, Sphingobium qiguonii, Sphingomonadaceae
HM748834, Sphingobium jiangsuense, Sphingomonadaceae
FJ177535, Sphingobium vulgare, Sphingomonadaceae
D13737, Sphingomonas suberifaciens, Sphingomonadaceae
AB024288, Blastomonas natatoria, type sp., Sphingomonadaceae
AB024289, Sphingomonas ursincola, Sphingomonadaceae
AJ303009, Novosphingobium lentum, Sphingomonadaceae
AB070237, Novosphingobium tardaugens, Sphingomonadaceae
AJ416411, Novosphingobium hassiacum, Sphingomonadaceae
DQ448852, Novosphingobium nitrogenifigens, Sphingomonadaceae
 AB025013, Sphingomonas stygia, Sphingomonadaceae
AY500142, Novosphingobium taihuense, Sphingomonadaceae
CP000248, Sphingomonas aromaticivorans, Sphingomonadaceae
AB025014, Sphingomonas subterranea, Sphingomonadaceae
D16147, Sphingomonas capsulata, Sphingomonadaceae
EU336977, Novosphingobium acidiphilum, Sphingomonadaceae
D13945, Sphingomonas rosa, Sphingomonadaceae
FJ177534, Novosphingobium sediminicola, Sphingomonadaceae
AB177883, Novosphingobium naphthalenivorans, Sphingomonadaceae
EF029110, Novosphingobium resinovorum, Sphingomonadaceae
FJ425737, Novosphingobium soli, Sphingomonadaceae
D13727, Sphingomonas terrae, Sphingomonadaceae
EF424391, Sphingopyxis ummariensis, Sphingomonadaceae
D13722, Sphingomonas adhaesiva, Sphingomonadaceae
AY563034, Sphingopyxis granuli, Sphingomonadaceae
EU075217, Sphingopyxis panaciterrulae, Sphingomonadaceae
AJ416410, Sphingopyxis witflariensis, Sphingomonadaceae
AB245353, Sphingopyxis panaciterrae, Sphingomonadaceae
AF367204, Sphingopyxis chilensis, Sphingomonadaceae
GQ131578, Sphingopyxis bauzanensis, Sphingomonadaceae
FJ599671, Sphingopyxis soli, Sphingomonadaceae
AF131297, Sphingopyxis taejonensis, Sphingomonadaceae
AB245343, Sphingopyxis ginsengisoli, Sphingomonadaceae
D13723, Sphingomonas macrogoltabidus, Sphingomonadaceae
Z73631, Sphingopyxis alaskensis, Sphingomonadaceae
DQ781321, Sphingopyxis litoris, Sphingomonadaceae
DQ781320, Sphingopyxis marina, Sphingomonadaceae
AY554010, Sphingopyxis flavimaris, Sphingomonadaceae
AY608604, Sphingopyxis baekryungensis, Sphingomonadaceae
HM028673, Altererythrobacter xinjiangensis, Erythrobacteraceae
GU166344, Altererythrobacter dongtanensis, Erythrobacteraceae
EF623998, Croceicoccus marinus, type sp., Erythrobacteraceae
AF502400, Novosphingobium pentaromativorans, Sphingomonadaceae
EF424403, Novosphingobium mathurense, Sphingomonadaceae
EF424402, Novosphingobium panipatense, Sphingomonadaceae
EF549586, Novosphingobium indicum, Sphingomonadaceae

Erythrobacteraceae (24)
AY562219, Erythrobacter seohaensis, Erythrobacteraceae
EU428782, Erythrobacter gangjinensis, Erythrobacteraceae
AF118020, Erythrobacter citreus, Erythrobacteraceae
HQ203045, Erythrobacter pelagi, Erythrobacteraceae
AY461441, Erythrobacter aquimaris, Erythrobacteraceae
AF465835, Erythrobacter longus, type sp., Erythrobacteraceae
FJ654473, Erythrobacter nanhaisediminis, Erythrobacteraceae
AY706935, Erythrobacter vulgaris, Erythrobacteraceae
AF500004, Erythrobacter flavus, Erythrobacteraceae
AY562220, Erythrobacter gaetbuli, Erythrobacteraceae
AB021493, Porphyrobacter sanguineus, Erythrobacteraceae
AB033328, Porphyrobacter tepidarius, Erythrobacteraceae
AB033327, Porphyrobacter neustonensis, type sp., Erythrobacteraceae
AF465834, Porphyrobacter cryptus, Erythrobacteraceae
DQ011529, Porphyrobacter dokdonensis, Erythrobacteraceae
AY559428, Porphyrobacter donghaensis, Erythrobacteraceae
AF465837, Erythromicrobium ramosum, type sp., Erythrobacteraceae
AF465836, Erythrobacter litoralis, Erythrobacteraceae
EU726272, Altererythrobacter marinus, Erythrobacteraceae
FM177586, Altererythrobacter marensis, Erythrobacteraceae
DQ399262, Altererythrobacter indicus, Erythrobacteraceae
AB363004, Altererythrobacter ishigakiensis, Erythrobacteraceae
AY739662, Altererythrobacter luteolus, Erythrobacteraceae
DQ304436, Altererythrobacter epoxidivorans, type sp., Erythrobacteraceae

FJ997597, Altererythrobacter aestuarii, Erythrobacteraceae

FJ935793, Altererythrobacter namhicola, Erythrobacteraceae

Kordiimonadales (2)
AY682384, Kordiimonas gwangyangensis, type sp., Kordiimonadaceae
FJ847942, Kordiimonas lacus, Kordiimonadaceae

D14431, Rhodothalassium salexigens, type sp., Rhodobacteraceae

Sneathiellales (2)
DQ219355, Sneathiella chinensis, type sp., Sneathiellaceae
AB289439, Sneathiella glossodoripedis, Sneathiellaceae

Rickettsiales (27)

Rickettsiaceae (20)
U17645, Rickettsia honei, Rickettsiaceae
L36217, Rickettsia rickettsii, Rickettsiaceae
D38628, Rickettsia sibirica, Rickettsiaceae
AF541999, Rickettsia conorii, Rickettsiaceae
L36673, Rickettsia parkeri, Rickettsiaceae
AF178037, Rickettsia heilongjiangensis, Rickettsiaceae
DQ365810, Rickettsia raoultii, Rickettsiaceae
AF394906, Rickettsia asiatica, Rickettsiaceae
U74757, Rickettsia aeschlimannii, Rickettsiaceae
L36216, Rickettsia rhipicephali, Rickettsiaceae
L36215, Rickettsia montanensis, Rickettsiaceae
AY049981, Rickettsia tamurae, Rickettsiaceae
L36214, Rickettsia massiliae, Rickettsiaceae
M21789, Rickettsia prowazekii, type sp., Rickettsiaceae
U12463, Rickettsia typhi, Rickettsiaceae
L36099, Rickettsia akari , Rickettsiaceae
L36101, Rickettsia australis, Rickettsiaceae
L36104, Rickettsia canadensis, Rickettsiaceae
L36103, Rickettsia bellii, Rickettsiaceae
D38623, Orientia tsutsugamushi, type sp., Rickettsiaceae

Anaplasmataceae (7)
M73222, Ehrlichia chaffeensis, Anaplasmataceae
U15527, Ehrlichia muris, Anaplasmataceae
M73227, Ehrlichia ewingii, Anaplasmataceae
X61659, Ehrlichia ruminantium, Anaplasmataceae
U02521, Anaplasma phagocytophilum, Anaplasmataceae
M21290, Neorickettsia risticii, Anaplasmataceae
M73219, Neorickettsia sennetsu, Anaplasmataceae

Rhodospirillaceae (23)
AM283537, Roseospira goensis, Rhodospirillaceae
AJ298879, Roseospira marina, Rhodospirillaceae
AM282560, Roseospira visakhapatnamensis, Rhodospirillaceae
AJ298880, Roseospira navarrensis, Rhodospirillaceae
 X99671, Rhodospira trueperi, type sp., Rhodospirillaceae
AJ222662, Rhodospirillum photometricum, Rhodospirillaceae
AM710622, Rhodospirillum sulfurexigens, Rhodospirillaceae
CP000230, Rhodospirillum rubrum, type sp., Rhodospirillaceae
FN391894, Phaeovibrio sulfidiphilus, type sp., Rhodospirillaceae
AY189753, Thalassospira xiamenensis, Rhodospirillaceae
EU017546, Thalassospira xianhensis, Rhodospirillaceae
AF358664, Thalassospira lucentensis, type sp., Rhodospirillaceae
AY186195, Thalassospira profundimaris, Rhodospirillaceae
AB265822, Thalassospira tepidiphila, Rhodospirillaceae
AB006768, Terasakiella pusilla, type sp., Methylocystaceae
EF612767, Insolitispirillum peregrinum subsp. peregrinum, type sp., Rhodospirillaceae
EF612768, Insolitispirillum peregrinum subsp. integrum, Rhodospirillaceae
EU642410, Marispirillum indicum, type sp., Rhodospirillaceae
AB074520, Novispirillum itersonii subsp. nipponicum, Rhodospirillaceae
EF612765, Novispirillum itersonii subsp. itersonii, type sp., Rhodospirillaceae
EF100694, Caenispirillum bisanense, type sp., Rhodospirillaceae
FN995238, Caenispirillum salinarum, Rhodospirillaceae
AJ011919, Roseospirillum parvum, type sp., Rhodobiaceae

D14432, Rhodovibrio salinarum, type sp., Rhodospirillaceae

FR733704, Rhodovibrio sodomensis, Rhodospirillaceae
FJ357426, Fodinicurvata sediminis, type sp., Rhodospirillaceae
FJ357427, Fodinicurvata fenggangensis, Rhodospirillaceae
EU728658, Tistlia consotensis, type sp., Rhodospirillaceae
DQ401091, Pelagibius litoralis, type sp., Rhodospirillaceae
AM749667, Kiloniella laminariae, type sp., Kiloniellaceae
AB071665, Tistrella mobilis, type sp., Rhodospirillaceae
GQ240228, Tistrella bauzanensis, Rhodospirillaceae

Acetobacteraceae (109)
AB602333, Acetobacter farinalis, Acetobacteraceae
AB032350, Acetobacter orleanensis, Acetobacteraceae
AJ419844, Acetobacter malorum, Acetobacteraceae
AJ419843, Acetobacter cerevisiae, Acetobacteraceae
AY883036, Acetobacter senegalensis, Acetobacteraceae
AB032355, Acetobacter tropicalis, Acetobacteraceae
AB052710, Acetobacter cibinongensis, Acetobacteraceae
AB052706, Acetobacter orientalis, Acetobacteraceae
AB032356, Acetobacter indonesiensis, Acetobacteraceae
X74066, Acetobacter aceti, type sp., Acetobacteraceae
AY669513, Acetobacter nitrogenifigens, Acetobacteraceae
AY829472, Acetobacter oeni, Acetobacteraceae
AJ419838, Acetobacter estunensis, Acetobacteraceae
AM905849, Acetobacter fabarum, Acetobacteraceae
AB032351, Acetobacter lovaniensis, Acetobacteraceae
EF030713, Acetobacter ghanensis, Acetobacteraceae
AB052712, Acetobacter syzygii, Acetobacteraceae
X71863, Acetobacter pasteurianus subsp. pasteurianus, Acetobacteraceae
GU205100, Acetobacter pasteurianus subsp. paradoxus, Acetobacteraceae
AJ419835, Acetobacter pomorum, Acetobacteraceae
AB032352, Acetobacter peroxydans, Acetobacteraceae
AB178392, Gluconobacter albidus, Acetobacteraceae
AB178431, Gluconobacter sphaericus, Acetobacteraceae
AB459530, Gluconobacter kanchanaburiensis, Acetobacteraceae
AB178405, Gluconobacter kondonii, Acetobacteraceae
X73820, Gluconobacter oxydans, type sp., Acetobacteraceae
AB178429, Gluconobacter roseus, Acetobacteraceae
AB193244, Gluconobacter uchimurae, Acetobacteraceae
X82290, Gluconobacter frateurii, Acetobacteraceae
AB511060, Gluconobacter wancherniae, Acetobacteraceae
AB253435, Gluconobacter japonicus, Acetobacteraceae
AB128050, Gluconobacter thailandicus, Acetobacteraceae
AB540148, Gluconobacter nephelii, Acetobacteraceae
AB178406, Gluconobacter cerinus, Acetobacteraceae
AB513363, Neokomagataea thailandica, type sp., Acetobacteraceae
AB513364, Neokomagataea tanensis, Acetobacteraceae
AB110421, Saccharibacter floricola, type sp., Acetobacteraceae
AB303366, Ameyamaea chiangmaiensis, type sp., Acetobacteraceae
AB304087, Tanticharoenia sakaeratensis, type sp., Acetobacteraceae
AB485740, Asaia astilbis, Acetobacteraceae
AB485741, Asaia prunellae, Acetobacteraceae
AB485739, Asaia platycodi, Acetobacteraceae
AB511277, Asaia spathodeae, Acetobacteraceae
AB035416, Asaia siamensis, Acetobacteraceae
AB025928, Asaia bogorensis, type sp., Acetobacteraceae
AB102953, Asaia krungthepensis, Acetobacteraceae
AB286050, Asaia lannensis, Acetobacteraceae
AF459454, Swaminathania salitolerans, type sp., Acetobacteraceae
AB056321, Kozakia baliensis, type sp., Acetobacteraceae
AB208549, Neoasaia chiangmaiensis, type sp., Acetobacteraceae
X77468, Acidomonas methanolica, type sp., Acetobacteraceae
X75617, Gluconacetobacter liquefaciens, type sp., Acetobacteraceae
AF127407, Gluconacetobacter sacchari, Acetobacteraceae
AB627116, Gluconacetobacter tumulicola, Acetobacteraceae
AB627120, Gluconacetobacter asukensis, Acetobacteraceae
X75618, Gluconacetobacter diazotrophicus, Acetobacteraceae
AF192761, Gluconacetobacter azotocaptans, Acetobacteraceae
AF111841, Gluconacetobacter johannae, Acetobacteraceae
AB205221, Gluconacetobacter oboediens, Acetobacteraceae
AY180961, Gluconacetobacter rhaeticus, Acetobacteraceae
Y14694, Gluconacetobacter intermedius, Acetobacteraceae
AB607833, Gluconacetobacter kakiaceti, Acetobacteraceae
AB166743, Gluconacetobacter nataicola, Acetobacteraceae
Z21936, Gluconacetobacter europaeus, Acetobacteraceae
AY180960, Gluconacetobacter swingsii, Acetobacteraceae
AJ012466, Gluconacetobacter saccharivorans, Acetobacteraceae
AJ007698, Gluconacetobacter sucrofermentans, Acetobacteraceae
X75619, Gluconacetobacter xylinus, Acetobacteraceae
X75620, Gluconacetobacter hansenii, Acetobacteraceae
AY688433, Gluconacetobacter kombuchae, Acetobacteraceae
AJ251110, Gluconacetobacter entanii, Acetobacteraceae
AY788950, Granulibacter bethesdensis, type sp., Acetobacteraceae
D86513, Rhodopila globiformis, type sp., Acetobacteraceae
D30772, Acidiphilium angustum, Acetobacteraceae
D30776, Acidiphilium rubrum, Acetobacteraceae
D86511, Acidiphilium acidophilum, Acetobacteraceae
D30773, Acidiphilium cryptum, type sp., Acetobacteraceae
D30775, Acidiphilium organovorum, Acetobacteraceae
AB006711, Acidiphilium multivorum, Acetobacteraceae
AB362219, Acidocella aluminiidurans, Acetobacteraceae
D30774, Acidocella facilis, type sp., Acetobacteraceae
D30771, Acidocella aminolytica, Acetobacteraceae
AM947653, Acidisoma sibiricum, Acetobacteraceae
 AM947652, Acidisoma tundrae, type sp., Acetobacteraceae
AY140238, Acidicaldus organivorans, type sp., Acetobacteraceae
D86512, Acidisphaera rubrifaciens, type sp., Acetobacteraceae
AY150047, Roseomonas cervicalis, Acetobacteraceae
AJ488504, Roseomonas ludipueritiae, Acetobacteraceae
FM244739, Roseomonas aestuarii, Acetobacteraceae
AJ786000, Roseomonas lacus, Acetobacteraceae
EF363716, Roseomonas terrae, Acetobacteraceae
EU290160, Roseomonas frigidaquae, Acetobacteraceae
AB369258, Roseomonas stagni, Acetobacteraceae
AM231587, Roseomonas aquatica, Acetobacteraceae
AJ488505, Roseomonas rosea, Acetobacteraceae
EF661571, Roseomonas aerilata, Acetobacteraceae
EF368368, Roseomonas vinacea, Acetobacteraceae
GU168019, Roseomonas pecuniae, Acetobacteraceae
AY220740, Roseomonas gilardii subsp. rosea, Acetobacteraceae
AF538712, Roseomonas mucosa, Acetobacteraceae
AY150045, Roseomonas gilardii subsp. gilardii, type sp., Acetobacteraceae
AJ871428, Belnapia moabensis, type sp., Acetobacteraceae
HQ641379, Belnapia rosea, Acetobacteraceae
D85828, Craurococcus roseus, type sp., Acetobacteraceae
D85827, Paracraurococcus ruber, type sp., Acetobacteraceae
AJ633644, Rhodovarius lipocyclicus, type sp., Acetobacteraceae
EU012448, Roseococcus suduntuyensis, Acetobacteraceae
X72908, Roseococcus thiosulfatophilus, type sp., Acetobacteraceae
AF465832, Rubritepida flocculans, type sp., Acetobacteraceae

EF519867, Elioraea tepidiphila, type sp., Unclassified Rhodospirillales

AF179678, Defluviicoccus vanus, type sp., Rhodospirillaceae
DQ022958, Azospirillum melinis, Rhodospirillaceae
AB185396, Azospirillum oryzae, Rhodospirillaceae
Z29619, Azospirillum lipoferum, type sp., Rhodospirillaceae
DQ682470, Azospirillum zeae, Rhodospirillaceae
AJ238567, Azospirillum doebereinerae, Rhodospirillaceae
EU678791, Azospirillum thiophilum, Rhodospirillaceae
AM922283, Azospirillum picis, Rhodospirillaceae
GU256444, Azospirillum formosense, Rhodospirillaceae
AY324110, Azospirillum brasilense, Rhodospirillaceae
DQ393891, Azospirillum canadense, Rhodospirillaceae
AM419042, Azospirillum rugosum, Rhodospirillaceae
X79731, Azospirillum halopraeferens, Rhodospirillaceae
EU678309, Elstera litoralis, type sp., Rhodospirillaceae
DQ672568, Skermanella aerolata, Rhodospirillaceae
X90760, Skermanella parooensis, type sp., Rhodospirillaceae
HQ315828, Skermanella stibiiresistens, Rhodospirillaceae
EU833987, Desertibacter roseus, type sp., Rhodospirillaceae
EU586202, Skermanella xinjiangensis, Rhodospirillaceae
D12701, Rhodocista centenaria, type sp., Rhodospirillaceae
AF523824, Rhodocista pekingensis, Rhodospirillaceae
Z29583, Azospirillum irakense, Rhodospirillaceae
GU256437, Azospirillum amazonense, Rhodospirillaceae
X71837, Caedibacter caryophilus, Unclassified Thiotrichales
AB510913, Constrictibacter antarcticus, type sp., Rhodospirillaceae
AJ535710, Stella humosa, type sp., Acetobacteraceae
AJ535711, Stella vacuolata, Acetobacteraceae
AB245352, Inquilinus ginsengisoli, Rhodospirillaceae
AY043374, Inquilinus limosus, type sp., Rhodospirillaceae
DQ665838, Nisaea denitrificans, type sp., Rhodospirillaceae
DQ665839, Nisaea nitritireducens, Rhodospirillaceae
EU008565, Thalassobaculum salexigens, Rhodospirillaceae
EF203900, Thalassobaculum litoreum, type sp., Rhodospirillaceae
EU656113, Oceanibaculum indicum, type sp., Rhodospirillaceae
FJ463255, Oceanibaculum pacificum, Rhodospirillaceae
EF394922, Reyranella massiliensis, type sp., Unclassified Rhodospirillales
FJ455532, Dongia mobilis, type sp., Rhodospirillaceae
AM779061, Phaeospirillum chandramohanii, Rhodospirillaceae
AM901294, Phaeospirillum oryzae, Rhodospirillaceae
D14433, Phaeospirillum fulvum, type sp., Rhodospirillaceae
FR733695, Phaeospirillum molischianum, Rhodospirillaceae
FN675262, Phaeospirillum tilakii, Rhodospirillaceae
FJ562215, Aquaspirillum polymorphum, Neisseriaceae
Y10109, Magnetospirillum gryphiswaldense, type sp., Rhodospirillaceae
Y10110, Magnetospirillum magnetotacticum, Rhodospirillaceae
AF524863, Telmatospirillum siberiense, type sp., Rhodospirillaceae

EF493243, Mariprofundus ferrooxydans, type sp., Mariprofundaceae

Spirochaetes (82)

Spirochaetaceae (55)
AF033306, Treponema socranskii subsp. socranskii, Spirochaetaceae
AF033305, Treponema socranskii subsp. buccale, Spirochaetaceae
AF033307, Treponema socranskii subsp. paredis, Spirochaetaceae
Y09959, Treponema amylovorum, Spirochaetaceae
AF302937, Treponema parvum, Spirochaetaceae
AY518274, Treponema porcinum, Spirochaetaceae
M57738, Treponema succinifaciens, Spirochaetaceae
FR749895, Treponema bryantii, Spirochaetaceae
AY230217, Treponema berlinense, Spirochaetaceae
GU562449, Treponema pectinovorum, Spirochaetaceae
M71238, Treponema saccharophilum, Spirochaetaceae
Y16568, Treponema brennaborense, Spirochaetaceae
X87139, Treponema lecithinolyticum, Spirochaetaceae
X87140, Treponema maltophilum, Spirochaetaceae
AF139203, Treponema denticola, Spirochaetaceae
AJ543428, Treponema putidum, Spirochaetaceae
EF061268, Treponema pedis, Spirochaetaceae
D85437, Treponema medium, Spirochaetaceae
FR749929, Spirochaeta zuelzerae, Spirochaetaceae
AF320287, Treponema azotonutricium, Spirochaetaceae
AF093252, Treponema primitia, Spirochaetaceae
AM182455, Treponema isoptericolens, Spirochaetaceae
EU580141, Spirochaeta caldaria, Spirochaetaceae
FR733664, Spirochaeta stenostrepta, Spirochaetaceae
X93926, Spirochaeta asiatica, Spirochaetaceae
AY995150, Spirochaeta dissipatitropha, Spirochaetaceae
X93928, Spirochaeta africana, Spirochaetaceae
X93927, Spirochaeta alkalica, Spirochaetaceae
AF373921, Spirochaeta americana, Spirochaetaceae
M88722, Spirochaeta halophila, Spirochaetaceae
AF357916, Sphaerochaeta globosa, type sp., Spirochaetaceae
AF357917, Sphaerochaeta pleomorpha, Spirochaetaceae
AJ698092, Spirochaeta coccoides, Spirochaetaceae
FR749903, Spirochaeta thermophila, Spirochaetaceae
AJ698859, Spirochaeta bajacaliforniensis, Spirochaetaceae
 U80597, Spirochaeta smaragdinae, Spirochaetaceae
M59293, Borrelia burgdorferi, Spirochaetaceae
EU085407, Borrelia carolinensis, Spirochaetaceae
L40597, Borrelia japonica, Spirochaetaceae
AB022101, Borrelia sinica, Spirochaetaceae
D67018, Borrelia garinii, Spirochaetaceae
X98228, Borrelia lusitaniae, Spirochaetaceae
EU081285, Borrelia americana, Spirochaetaceae
D67022, Borrelia turdi, Spirochaetaceae
X98232, Borrelia valaisiana, Spirochaetaceae
FR733687, Borrelia afzelii, Spirochaetaceae
D67023, Borrelia tanukii, Spirochaetaceae
U42286, Borrelia coriaceae, Spirochaetaceae
D45192, Borrelia miyamotoi, Spirochaetaceae
AB111849, Borrelia turcica, Spirochaetaceae
FR749896, Spirochaeta aurantia subsp. aurantia, Spirochaetaceae
FR749931, Spirochaeta isovalerica, Spirochaetaceae
AY337318, Spirochaeta perfilievii, Spirochaetaceae
FR733665, Spirochaeta litoralis, Spirochaetaceae
EU448140, Spirochaeta cellobiosiphila, Spirochaetaceae

AB364473, Exilispira thermophila, type sp., Unclassified Spirochaetales

Brachyspiraceae (7)
EF455559, Brachyspira alvinipulli, Brachyspiraceae
AY155458, Brachyspira pilosicoli, Brachyspiraceae
U23033, Brachyspira intermedia, Brachyspiraceae
U14930, Brachyspira hyodysenteriae, Brachyspiraceae
U14920, Brachyspira innocens, Brachyspiraceae
AY312492, Brachyspira murdochii, Brachyspiraceae
Z22781, Brachyspira aalborgi, type sp., Brachyspiraceae

GU993264, Brevinema andersonii, type sp., Brevinemataceae

Leptospiraceae (18)
AY887899, Leptospira borgpetersenii , Leptospiraceae
AY631883, Leptospira santarosai, Leptospiraceae
AY631877, Leptospira weilii , Leptospiraceae
AY631880, Leptospira alexanderi, Leptospiraceae
Z12817, Leptospira interrogans, type sp., Leptospiraceae
AY631895, Leptospira kirschneri , Leptospiraceae
AY631886, Leptospira noguchii , Leptospiraceae
AB279549, Leptospira kmetyi, Leptospiraceae
AY796065, Leptospira broomii, Leptospiraceae
AY631885, Leptospira fainei, Leptospiraceae
EF612284, Leptospira licerasiae, Leptospiraceae
EF025496, Leptospira wolffii, Leptospiraceae
Z21634, Leptospira inadai, Leptospiraceae
AY631876, Leptospira biflexa , Leptospiraceae
AY631878, Leptospira meyeri , Leptospiraceae
AY631879, Leptospira wolbachii , Leptospiraceae
AY714984, Leptonema illini, type sp., Leptospiraceae
AY293856, Turneriella parva, type sp., Leptospiraceae

Fusobacteria (38)

Fusobacteriaceae (28)
X55406, Filifactor alocis, Peptostreptococcaceae
X55404, Fusobacterium nucleatum subsp. animalis, Fusobacteriaceae
M58685, Fusobacterium simiae, Fusobacteriaceae
AE009951, Fusobacterium nucleatum subsp. nucleatum, type sp., Fusobacteriaceae
X55403, Fusobacterium nucleatum subsp. fusiforme, Fusobacteriaceae
AABF01000111, Fusobacterium nucleatum subsp. vincentii , Fusobacteriaceae
AY162221, Fusobacterium canifelinum, Fusobacteriaceae
X55405, Fusobacterium periodonticum, Fusobacteriaceae
AF287812, Fusobacterium nucleatum subsp. polymorphum, Fusobacteriaceae
M58681, Fusobacterium russii, Fusobacteriaceae
AJ867039, Fusobacterium necrophorum subsp. necrophorum, Fusobacteriaceae
AB525413, Fusobacterium necrophorum subsp. funduliforme, Fusobacteriaceae
AJ295750, Fusobacterium equinum, Fusobacteriaceae
X55410, Fusobacterium gonidiaformans, Fusobacteriaceae
X55412, Fusobacterium ulcerans, Fusobacteriaceae
AJ867036, Fusobacterium varium, Fusobacteriaceae
X77850, Clostridium rectum, Clostridiaceae
AJ867032, Fusobacterium mortiferum, Fusobacteriaceae
AJ867034, Fusobacterium necrogenes, Fusobacteriaceae
M58684, Fusobacterium perfoetens, Fusobacteriaceae
AJ438155, Cetobacterium somerae, Fusobacteriaceae
X78419, Cetobacterium ceti, type sp., Fusobacteriaceae
AJ307980, Ilyobacter insuetus, Fusobacteriaceae
X54275, Propionigenium modestum, type sp., Fusobacteriaceae
CP002281, Ilyobacter polytropus, type sp., Fusobacteriaceae
X84049, Propionigenium maris, Fusobacteriaceae
AJ307982, Ilyobacter tartaricus, Fusobacteriaceae
AY579753, Psychrilyobacter atlanticus, type sp., Fusobacteriaceae

Leptotrichiaceae (10)
EU919515, Leptotrichia hongkongensis, Leptotrichiaceae
AF206305, Leptotrichia trevisanii, Leptotrichiaceae
AY029806, Leptotrichia shahii, Leptotrichiaceae
AY029802, Leptotrichia wadei, Leptotrichiaceae
CP001685, Leptotrichia buccalis, type sp., Leptotrichiaceae
AY029803, Leptotrichia hofstadii, Leptotrichiaceae
AY029807, Leptotrichia goodfellowii, Leptotrichiaceae
CP001739, Sebaldella termitidis, type sp., Leptotrichiaceae
CP001779, Streptobacillus moniliformis, type sp., Leptotrichiaceae
AJ344093, Sneathia sanguinegens, type sp., Leptotrichiaceae

AB529679, Armatimonas rosea, type sp., Armatimonadaceae

AM749780, Chthonomonas calidirosea, type.sp, Chthonomonadaceae
AM490846, Elusimicrobium minutum, type sp., Elusimicrobiaceae

Deferribacteres (10)
X95744, Geovibrio ferrireducens, type sp., Deferribacteraceae
AJ299402, Geovibrio thiophilus, Deferribacteraceae
AF146526, Denitrovibrio acetiphilus, type sp., Deferribacteraceae
AY387670, Mucispirillum schaedleri, type sp., Deferribacteraceae
AB364234, Calditerrivibrio nitroreducens, type sp., Deferribacteraceae
AJ515882, Deferribacter abyssi, Deferribacteraceae
EU407777, Deferribacter autotrophicus, Deferribacteraceae
AB086060, Deferribacter desulfuricans, Deferribacteraceae
U75602, Deferribacter thermophilus, type sp., Deferribacteraceae
M59231, Flexistipes sinusarabici, type sp., Deferribacteraceae
 Chrysiogenetes (4)
DQ991965, Desulfurispirillum indicum, Chrysiogenaceae
DQ666683, Desulfurispirillum alkaliphilum, type sp., Chrysiogenaceae
GQ922842, Desulfurispira natronophila, type sp., Chrysiogenaceae
X81319, Chrysiogenes arsenatis, type sp., Chrysiogenaceae

Acidobacteria (17)
AM887756, Granulicella aggregans, Acidobacteriaceae
AM887759, Granulicella rosea, Acidobacteriaceae
AM887757, Granulicella pectinivorans, Acidobacteriaceae
AM887758, Granulicella paludicola, type sp., Acidobacteriaceae
DQ660892, Terriglobus roseus, type sp., Acidobacteriaceae
HM214537, Terriglobus saanensis, Acidobacteriaceae
DQ528761, Edaphobacter aggregans, Acidobacteriaceae
DQ528760, Edaphobacter modestus, type sp., Acidobacteriaceae
FR666706, Bryocella elongata, type sp., Acidobacteriaceae
FR774763, Acidicapsa borealis, type sp., Acidobacteriaceae
EU780204, Acidicapsa ligni, Acidobacteriaceae
AM887760, Telmatobacter bradus, type sp., Acidobacteriaceae
CP001472, Acidobacterium capsulatum, type sp., Acidobacteriaceae
AM162405, Bryobacter aggregatus, type sp., Unclassified Acidobacteria
U41563, Geothrix fermentans, type sp., Holophagaceae
X77215, Holophaga foetida, type sp., Holophagaceae
AB303221, Acanthopleuribacter pedis, type sp., Acanthopleuribacteraceae

Epsilonproteobacteria (97)

Campylobacterales (87)

Campylobacteraceae (48)
U03022, Campylobacter helveticus, Campylobacteraceae
DQ174157, Campylobacter upsaliensis, Campylobacteraceae
EU623473, Campylobacter avium, Campylobacteraceae
DQ400345, Campylobacter cuniculorum, Campylobacteraceae
EF621894, Campylobacter canadensis, Campylobacteraceae
AM922331, Campylobacter peloridis, Campylobacteraceae
AY621114, Campylobacter lari subsp. lari, Campylobacteraceae
FM883694, Campylobacter volucris, Campylobacteraceae
AM933371, Campylobacter subantarcticus, Campylobacteraceae
AM922330, Campylobacter lari subsp. concheus, Campylobacteraceae
DQ174183, Campylobacter insulaenigrae, Campylobacteraceae
DQ174144, Campylobacter jejuni subsp. doylei, Campylobacteraceae
AF372091, Campylobacter jejuni subsp. jejuni, Campylobacteraceae
AF372092, Campylobacter coli, Campylobacteraceae
AF097685, Campylobacter hyointestinalis subsp. lawsonii, Campylobacteraceae
AF043425, Campylobacter lanienae, Campylobacteraceae
AF097689, Campylobacter hyointestinalis subsp. hyointestinalis, Campylobacteraceae
DQ174131, Campylobacter fetus subsp. venerealis, Campylobacteraceae
DQ174127, Campylobacter fetus subsp. fetus, type sp., Campylobacteraceae
DQ174173, Campylobacter mucosalis, Campylobacteraceae
L04321, Campylobacter ureolyticus, Campylobacteraceae
AJ251584, Campylobacter hominis, Campylobacteraceae
DQ174168, Campylobacter gracilis, Campylobacteraceae
X67775, Campylobacter sputorum subsp. sputorum, Campylobacteraceae
DQ174151, Campylobacter sputorum subsp. bubulus, Campylobacteraceae
DQ174169, Campylobacter rectus, Campylobacteraceae
DQ174155, Campylobacter showae, Campylobacteraceae
DQ174165, Campylobacter curvus, Campylobacteraceae
DQ174166, Campylobacter concisus, Campylobacteraceae
U85964, Sulfurospirillum arsenophilum, Campylobacteraceae
AF218076, Sulfurospirillum halorespirans, Campylobacteraceae
X82931, Sulfurospirillum multivorans, Campylobacteraceae
AF038843, Sulfurospirillum barnesii, Campylobacteraceae
Y13671, Sulfurospirillum deleyianum, type sp., Campylobacteraceae
AB246781, Sulfurospirillum cavolei, Campylobacteraceae
Y11561, Sulfurospirillum arcachonense, Campylobacteraceae
AY314753, Arcobacter thereius, Campylobacteraceae
FN650333, Arcobacter trophiarum, Campylobacteraceae
L14625, Arcobacter skirrowii, Campylobacteraceae
L14624, Arcobacter cryaerophilus, Campylobacteraceae
AJ607391, Arcobacter cibarius, Campylobacteraceae
AY621116, Arcobacter butzleri, Campylobacteraceae
HQ115595, Arcobacter defluvii, Campylobacteraceae
L14627, Arcobacter nitrofigilis, type sp., Campylobacteraceae
EU512920, Arcobacter marinus , Campylobacteraceae
FR675874, Arcobacter molluscorum, Campylobacteraceae
AF513455, Arcobacter halophilus, Campylobacteraceae
EU669904, Arcobacter mytili, Campylobacteraceae

Helicobacteraceae (33)
Y09404, Helicobacter bizzozeronii, Helicobacteraceae
DQ004689, Helicobacter cynogastricus, Helicobacteraceae
U89351, Helicobacter salomonis, Helicobacteraceae
M57398, Helicobacter felis, Helicobacteraceae
EF070342, Helicobacter baculiformis, Helicobacteraceae
HM625820, Helicobacter heilmannii, Helicobacteraceae
EF204589, Helicobacter suis, Helicobacteraceae
M88148, Helicobacter acinonychis, Helicobacteraceae
U01330, Helicobacter pylori, type sp., Helicobacteraceae
AF292378, Helicobacter cetorum, Helicobacteraceae
DQ415545, Helicobacter anseris, Helicobacteraceae
M35048, Helicobacter mustelae, Helicobacteraceae
DQ415546, Helicobacter brantae, Helicobacteraceae
AY686606, Helicobacter cholecystus, Helicobacteraceae
M88147, Helicobacter pametensis, Helicobacteraceae
M88154, Helicobacter fennelliae, Helicobacteraceae
U65103, Helicobacter trogontum, Helicobacteraceae
AF333341, Helicobacter marmotae, Helicobacteraceae
AY742307, Helicobacter mastomyrinus, Helicobacteraceae
AF297868, Helicobacter aurati, Helicobacteraceae
M80205, Helicobacter muridarum, Helicobacteraceae
AF127912, Helicobacter typhlonius, Helicobacteraceae
U07574, Helicobacter hepaticus, Helicobacteraceae
DQ307735, Helicobacter equorum, Helicobacteraceae
AY631956, Helicobacter pullorum, Helicobacteraceae
AF262037, Helicobacter canadensis, Helicobacteraceae
U18766, Helicobacter bilis, Helicobacteraceae
M88150, Helicobacter cinaedi, Helicobacteraceae
AY631945, Helicobacter canis, Helicobacteraceae
AF000221, Helicobacter ganmani, Helicobacteraceae
AF072471, Helicobacter mesocricetorum, Helicobacteraceae
U96296, Helicobacter rodentium, Helicobacteraceae
M88159, Wolinella succinogenes, type sp., Helicobacteraceae
 AB088431, Sulfurimonas autotrophica, type sp., Helicobacteraceae
CP000153, Sulfurimonas denitrificans, Helicobacteraceae
AB252048, Sulfurimonas paralvinellae, Helicobacteraceae
AB175500, Nitratifractor salsuginis, type sp., Nautiliaceae
AB091292, Sulfurovum lithotrophicum, type sp., Helicobacteraceae
AB105048, Hydrogenimonas thermophila, type sp., Hydrogenimonaceae

AB175499, Nitratiruptor tergarcus, type sp., Nautiliaceae

Nautiliaceae (9)
AM937002, Nautilia abyssi, Nautiliaceae
AF357197, Nautilia profundicola, Nautiliaceae
AJ404370, Nautilia lithotrophica, type sp., Nautiliaceae
FJ532475, Nautilia nitratireducens, Nautiliaceae
AB167820, Lebetimonas acidiphila, type sp., Nautiliaceae
AJ309655, Caminibacter hydrogeniphilus, type sp., Nautiliaceae
AY691430, Caminibacter mediatlanticus, Nautiliaceae
AJ535664, Caminibacter profundus, Nautiliaceae
AB175498, Thioreductor micantisoli, type sp., Nautiliaceae

Desulfurellaceae (7)
Y16943, Desulfurella multipotens, Desulfurellaceae
Y16942, Desulfurella propionica, Desulfurellaceae
X72768, Desulfurella acetivorans, type sp., Desulfurellaceae
Y16941, Desulfurella kamchatkensis, Desulfurellaceae
Y18292, Hippea maritima, type sp., Desulfurellaceae
FR754498, Hippea jasoniae, Desulfurellaceae
FR754500, Hippea alviniae, Desulfurellaceae

Desulfovibrionales (88)

Desulfovibrionaceae (63)
Y12254, Desulfovibrio intestinalis, Desulfovibrionaceae
FR733678, Desulfovibrio simplex, Desulfovibrionaceae
AF192153, Desulfovibrio desulfuricans subsp. desulfuricans, Desulfovibrionaceae
AF192152, Desulfovibrio piger, Desulfovibrionaceae
AJ867049, Bilophila wadsworthia, type sp., Desulfovibrionaceae
L15739, Lawsonia intracellularis, type sp., Desulfovibrionaceae
DQ122124, Desulfovibrio oxamicus, Desulfovibrionaceae
X87409, Desulfovibrio termitidis, Desulfovibrionaceae
Z24450, Desulfovibrio longreachensis, Desulfovibrionaceae
AF418179, Desulfovibrio vulgaris, Desulfovibrionaceae
X99501, Desulfovibrio cuneatus, Desulfovibrionaceae
X99504, Desulfovibrio litoralis, Desulfovibrionaceae
U32578, Desulfovibrio acrylicus, Desulfovibrionaceae
FJ655909, Desulfovibrio desulfuricans subsp. aestuarii, Desulfovibrionaceae
AB353727, Desulfovibrio marinisediminis, Desulfovibrionaceae
AM418397, Desulfovibrio psychrotolerans, Desulfovibrionaceae
Y11984, Desulfovibrio alaskensis, Desulfovibrionaceae
X93994, Desulfovibrio vietnamensis, Desulfovibrionaceae
Y09504, Desulfovibrio indonesiensis, Desulfovibrionaceae
DQ365924, Desulfovibrio marinus, Desulfovibrionaceae
U31080, Desulfovibrio gabonensis, Desulfovibrionaceae
FR749898, Desulfovibrio giganteus, Desulfovibrionaceae
DQ447183, Desulfovibrio gigas, Desulfovibrionaceae
AY726757, Desulfovibrio paquesii, Desulfovibrionaceae
AF230530, Desulfovibrio dechloracetivorans, Desulfovibrionaceae
AB110541, Desulfovibrio portus, Desulfovibrionaceae
FR733706, Desulfovibrio profundus, Desulfovibrionaceae
HM852532, Desulfovibrio piezophilus, Desulfovibrionaceae
X95230, Desulfovibrio aespoeensis, Desulfovibrionaceae
EF577029, Desulfovibrio tunisiensis, Desulfovibrionaceae
U48243, Desulfovibrio halophilus, Desulfovibrionaceae
U33316, Desulfovibrio oxyclinae, Desulfovibrionaceae
U53464, Desulfovibrio gracilis, Desulfovibrionaceae
AY359867, Desulfovibrio longus, Desulfovibrionaceae
DQ148944, Desulfovibrio ferrireducens, Desulfovibrionaceae
DQ148943, Desulfovibrio frigidus, Desulfovibrionaceae
AF458778, Desulfovibrio hydrothermalis, Desulfovibrionaceae
CP001649, Desulfovibrio salexigens, Desulfovibrionaceae
Y18049, Desulfovibrio zosterae, Desulfovibrionaceae
AY359868, Desulfovibrio bastinii, Desulfovibrionaceae
DQ296030, Desulfovibrio arcticus, Desulfovibrionaceae
AJ582755, Desulfovibrio idahonensis, Desulfovibrionaceae
AF227984, Desulfovibrio mexicanus, Desulfovibrionaceae
AF067964, Desulfovibrio aminophilus, Desulfovibrionaceae
DQ422859, Desulfovibrio bizertensis, Desulfovibrionaceae
HQ697913, Desulfobaculum xiamenensis, type sp., Desulfovibrionaceae
AF050100, Desulfovibrio senezii, Desulfovibrionaceae
DQ841177, Desulfocurvus vexinensis, type sp., Desulfovibrionaceae
AY649785, Desulfovibrio alkalitolerans, Desulfovibrionaceae
AY626035, Desulfovibrio carbinolicus, Desulfovibrionaceae
D43944, Desulfovibrio magneticus, Desulfovibrionaceae
AF053752, Desulfovibrio burkinensis, Desulfovibrionaceae
AY746987, Desulfovibrio aerotolerans, Desulfovibrionaceae
DQ186200, Desulfovibrio carbinoliphilus, Desulfovibrionaceae
AF050101, Desulfovibrio fructosivorans, Desulfovibrionaceae
AM947130, Desulfovibrio marrakechensis, Desulfovibrionaceae
AF053751, Desulfovibrio alcoholivorans, Desulfovibrionaceae
Y17764, Desulfovibrio sulfodismutans, Desulfovibrionaceae
AF177276, Desulfovibrio inopinatus, Desulfovibrionaceae
AB303305, Desulfovibrio butyratiphilus , Desulfovibrionaceae
AY574979, Desulfovibrio putealis, Desulfovibrionaceae
EU659693, Desulfovibrio africanus subsp. uniflagellum, Desulfovibrionaceae
X99236, Desulfovibrio africanus, Desulfovibrionaceae

Desulfonatronaceae (5)
AF418171, Desulfonatronum lacustre, type sp., Desulfonatronaceae
AF373920, Desulfonatronum thiodismutans, Desulfonatronaceae
FJ469577, Desulfonatronum thioautotrophicum, Desulfonatronaceae
FJ469578, Desulfonatronum thiosulfatophilum, Desulfonatronaceae
AY725424, Desulfonatronum cooperativum, Desulfonatronaceae

Desulfomicrobiaceae (7)
U64865, Desulfomicrobium apsheronum, Desulfomicrobiaceae
AJ277886, Desulfomicrobium escambiense, Desulfomicrobiaceae
AJ277897, Desulfomicrobium norvegicum, Desulfomicrobiaceae
AJ237604, Desulfomicrobium macestii, Desulfomicrobiaceae
AJ277894, Desulfomicrobium baculatum, type sp., Desulfomicrobiaceae
AJ251623, Desulfomicrobium orale, Desulfomicrobiaceae
AY464939, Desulfomicrobium thermophilum, Desulfomicrobiaceae

Desulfohalobiaceae (13)
 FJ194951, Desulfonauticus autotrophicus, Desulfohalobiaceae
AF524933, Desulfonauticus submarinus, type sp., Desulfohalobiaceae
X80922, Desulfothermus naphthae, type sp., Desulfohalobiaceae
AB264617, Desulfothermus okinawensis, Desulfohalobiaceae
DQ139408, Desulfovermiculus halophilus, type sp., Desulfohalobiaceae
DQ067421, Desulfohalobium utahense, Desulfohalobiaceae
X99235, Desulfohalobium retbaense, type sp., Desulfohalobiaceae
GU196831, Desulfonatronovibrio magnus, Desulfohalobiaceae
FJ469579, Desulfonatronovibrio thiodismutans, Desulfohalobiaceae
X99234, Desulfonatronovibrio hydrogenovorans, type sp., Desulfohalobiaceae
GQ922847, Desulfonatronovibrio halophilus, Desulfohalobiaceae
EU296539, Desulfonatronospira delicata, Desulfohalobiaceae
EU296537, Desulfonatronospira thiodismutans, type sp., Desulfohalobiaceae

Deltaproteobacteria (152)

Desulfobacteraceae (41)
AJ277887, Desulfococcus biacutus, Desulfobacteraceae
AF418173, Desulfococcus multivorans, type sp., Desulfobacteraceae
U45989, Desulfonema magnum, Desulfobacteraceae
U45990, Desulfonema limicola, type sp., Desulfobacteraceae
DQ067422, Desulfosalsimonas propionicica, type sp., Desulfobacteraceae
U45992, Desulfonema ishimotonii, Desulfobacteraceae
Y17286, Desulfosarcina ovata, Desulfobacteraceae
M34407, Desulfosarcina variabilis, type sp., Desulfobacteraceae
AJ237603, Desulfosarcina cetonica, Desulfobacteraceae
AY184360, Desulfatibacillum aliphaticivorans, type sp., Desulfobacteraceae
AY493562, Desulfatibacillum alkenivorans, Desulfobacteraceae
AJ237607, Desulfobacterium indolicum, type sp., Desulfobacteraceae
DQ146482, Desulfatirhabdium butyrativorans, type sp., Desulfobacteraceae
FR733666, Desulfobotulus sapovorans, type sp., Desulfobacteraceae
FJ789839, Desulfobotulus sapovorans, type sp., Desulfobacteraceae
FJ788523, Desulfobotulus alkaliphilus, Desulfobacteraceae
AF022936, Desulfocella halophila, type sp., Desulfobacteraceae
AF243334, Desulforegula conservatrix, type sp., Desulfobacteraceae
DQ826724, Desulfatiferula olefinivorans, type sp., Desulfobacteraceae
EF187256, Desulfoluna spongiiphila, Desulfobacteraceae
AB110540, Desulfoluna butyratoxydans, type sp., Desulfobacteraceae
AF099065, Desulfofrigus fragile, Desulfobacteraceae
AF099064, Desulfofrigus oceanense, type sp., Desulfobacteraceae
AF099063, Desulfofaba gelida, type sp., Desulfobacteraceae
AF321820, Desulfofaba hansenii, Desulfobacteraceae
AY268891, Desulfofaba fastidiosa, Desulfobacteraceae
AF418175, Desulfobacter curvatus, Desulfobacteraceae
AF418180, Desulfobacter postgatei, type sp., Desulfobacteraceae
Y14745, Desulfobacter halotolerans, Desulfobacteraceae
AJ441315, Desulfobacter latus, Desulfobacteraceae
FR733673, Desulfobacter hydrogenophilus, Desulfobacteraceae
U12254, Desulfobacter vibrioformis, Desulfobacteraceae
X99637, Desulfospira joergensenii, type sp., Desulfobacteraceae
AF418176, Desulfotignum balticum, type sp., Desulfobacteraceae
EF207157, Desulfotignum toluenicum, Desulfobacteraceae
AF420288, Desulfotignum phosphitoxidans, Desulfobacteraceae
AJ237606, Desulfobacula phenolica, Desulfobacteraceae
AJ441316, Desulfobacula toluolica, type sp., Desulfobacteraceae
FR733668, Desulfobacterium niacini, Desulfobacteraceae
AF418178, Desulfobacterium vacuolatum, Desulfobacteraceae
AF418177, Desulfobacterium autotrophicum, Desulfobacteraceae

Syntrophaceae (4)
X85131, Syntrophus buswellii, type sp., Syntrophaceae
X85132, Syntrophus gentianae, Syntrophaceae
CP000252, Syntrophus aciditrophicus, Syntrophaceae
AF126282, Smithella propionica, type sp., Syntrophaceae

AJ292759, Bdellovibrio bacteriovorus, type sp., Bdellovibrionaceae

Syntrophobacteraceae (11)
X82874, Syntrophobacter fumaroxidans, Syntrophobacteraceae
X82875, Syntrophobacter pfennigii, Syntrophobacteraceae
X83274, Desulforhabdus amnigena, type sp., Syntrophobacteraceae
AJ237605, Desulfovirga adipica, type sp., Syntrophobacteraceae
X70905, Syntrophobacter wolinii, type sp., Syntrophobacteraceae
AY651787, Syntrophobacter sulfatireducens, Syntrophobacteraceae
FJ491989, Desulfosoma caldarium, type sp., Syntrophobacteraceae
U25627, Thermodesulforhabdus norvegica, type sp., Syntrophobacteraceae
L27426, Desulfacinum infernum, type sp., Syntrophobacteraceae
AF170417, Desulfacinum hydrothermale, Syntrophobacteraceae
DQ303457, Desulfoglaeba alkanexedens, type sp., Syntrophobacteraceae

AF002671, Desulfobacca acetoxidans, type sp., Syntrophaceae

AJ237601, Desulfobacterium anilini, Desulfobacteraceae
AF418174, Desulfarculus baarsii, type sp., Desulfarculaceae
AF230531, Desulfomonile limimaris, Syntrophaceae
AM086646, Desulfomonile tiedjei, type sp., Syntrophaceae

Desulfobulbaceae (16)
Y13672, Desulfocapsa sulfexigens, Desulfobulbaceae
X95181, Desulfocapsa thiozymogenes, type sp., Desulfobulbaceae
AM774321, Desulfopila inferna, Desulfobulbaceae
AB110542, Desulfopila aestuarii, type sp., Desulfobulbaceae
AF118453, Desulforhopalus singaporensis, Desulfobulbaceae
X99707, Desulfofustis glycolicus, type sp., Desulfobulbaceae
L42613, Desulforhopalus vacuolatus, type sp., Desulfobulbaceae
AJ237602, Desulfobacterium catecholicum, Desulfobacteraceae
AF099061, Desulfotalea arctica, Desulfobulbaceae
AF099062, Desulfotalea psychrophila, type sp., Desulfobulbaceae
X95180, Desulfobulbus elongatus, Desulfobulbaceae
AY548789, Desulfobulbus propionicus, type sp., Desulfobulbaceae
U12253, Desulfobulbus rhabdoformis, Desulfobulbaceae
AB110549, Desulfobulbus japonicus, Desulfobulbaceae
AF354663, Desulfobulbus mediterraneus, Desulfobulbaceae
EF422413, Desulfurivibrio alkaliphilus, type sp., Desulfobulbaceae

Bacteriovoracaceae (4)
AF084859, Bacteriovorax litoralis, Bacteriovoracaceae
AF084854, Bacteriovorax marinus, Bacteriovoracaceae
AJ288899, Bacteriovorax stolpii, type sp., Bacteriovoracaceae
AF084852, Peredibacter starrii, type sp., Bacteriovoracaceae

Desulfuromonadales (37)

Desulfuromonadaceae (22)
X79412, Desulfuromusa bakii, Desulfuromonadaceae
X79414, Desulfuromusa kysingii, type sp., Desulfuromonadaceae
 X79415, Desulfuromusa succinoxidans, Desulfuromonadaceae
AY835392, Desulfuromusa ferrireducens, Desulfuromonadaceae
AY187303, Geopsychrobacter electrodiphilus, type sp., Geobacteraceae
Y17712, Malonomonas rubra, type sp., Desulfuromonadaceae
DQ991964, Pelobacter seleniigenes, Desulfuromonadaceae
X77216, Pelobacter acidigallici, type sp., Desulfuromonadaceae
FR749901, Pelobacter massiliensis, Desulfuromonadaceae
AY155599, Geothermobacter ehrlichii, type sp., Geobacteraceae
DQ309326, Geoalkalibacter ferrihydriticus, type sp., Geobacteraceae
EU182247, Geoalkalibacter subterraneus, Geobacteraceae
U28172, Desulfuromonas palmitatis, Desulfuromonadaceae
U23140, Desulfuromonas acetexigens, Desulfuromonadaceae
U49748, Desulfuromonas chloroethenica, Desulfuromonadaceae
AF357915, Desulfuromonas michiganensis, Desulfuromonadaceae
X70955, Pelobacter acetylenicus, Desulfuromonadaceae
U41562, Pelobacter venetianus, Desulfuromonadaceae
CP000142, Pelobacter carbinolicus , Desulfuromonadaceae
AAEW02000008, Desulfuromonas acetoxidans, type sp., Desulfuromonadaceae
AY835388, Desulfuromonas svalbardensis, Desulfuromonadaceae
Y11560, Desulfuromonas thiophila, Desulfuromonadaceae

Geobacteraceae (15)
AY187307, Geobacter bemidjiensis, Geobacteraceae
U96917, Geobacter bremensis, Geobacteraceae
EF527427, Geobacter uraniireducens, Geobacteraceae
EU660516, Geobacter daltonii , Geobacteraceae
U41561, Geobacter chapellei, Geobacteraceae
CP000482, Pelobacter propionicus , Desulfuromonadaceae
AY653549, Geobacter psychrophilus, Geobacteraceae
AF223382, Geobacter thiogenes, Geobacteraceae
U96918, Geobacter pelophilus, Geobacteraceae
DQ145534, Geobacter argillaceus, Geobacteraceae
U28173, Geobacter hydrogenophilus, Geobacteraceae
L07834, Geobacter metallireducens, type sp., Geobacteraceae
AF335183, Geobacter grbiciae, Geobacteraceae
U13928, Geobacter sulfurreducens, Geobacteraceae
DQ145535, Geobacter pickeringii, Geobacteraceae

Myxococcales (33)

Cystobacteraceae and Myxococcaceae (20)

Myxococcaceae (8)
DQ768119, Myxococcus virescens, Myxococcaceae
DQ768116, Myxococcus xanthus, Myxococcaceae
AJ811623, Corallococcus macrosporus, Myxococcaceae
DQ768117, Myxococcus fulvus, type sp., Myxococcaceae
DQ768123, Pyxidicoccus fallax, type sp., Myxococcaceae
AJ811588, Corallococcus coralloides, type sp., Myxococcaceae
DQ768126, Melittangium lichenicola, Cystobacteraceae
AJ811598, Corallococcus exiguus, Myxococcaceae

DQ768108, Cystobacter badius, Cystobacteraceae

DQ768109, Cystobacter fuscus, type sp., Cystobacteraceae
DQ768115, Cystobacter velatus, Cystobacteraceae
DQ768107, Cystobacter armeniaca, Cystobacteraceae
DQ768111, Cystobacter miniatus, Cystobacteraceae
DQ768106, Archangium gephyra, type sp., Cystobacteraceae
DQ768114, Cystobacter violaceus, Cystobacteraceae
DQ768124, Hyalangium minutum, type sp., Cystobacteraceae
DQ768127, Stigmatella aurantiaca, type sp., Cystobacteraceae
AJ970180, Stigmatella erecta, Cystobacteraceae
DQ768129, Stigmatella hybrida, Cystobacteraceae
AF382396, Anaeromyxobacter dehalogenans, type sp., Cystobacteraceae

Nannocystaceae (4)
AB097590, Enhygromyxa salina, type sp., Nannocystaceae
AB083432, Plesiocystis pacifica, type sp., Nannocystaceae
AB084253, Nannocystis exedens, type sp., Nannocystaceae
FR749907, Nannocystis pusilla, Nannocystaceae

Haliangiaceae (2)
AB016470, Haliangium ochraceum, type sp., Haliangiaceae
AB062751, Haliangium tepidum, Haliangiaceae

AJ233944, Kofleria flava, type sp., Kofleriaceae

AJ833647, Byssovorax cruenta, type sp., Polyangiaceae
EU545827, Phaselicystis flava, type sp., Phaselicystidaceae
EU240497, Sorangium cellulosum, type sp., Polyangiaceae
AJ233942, Chondromyces robustus, Polyangiaceae
GU207876, Jahnella thaxteri, Polyangiaceae
HQ540311, Sandaracinus amylolyticus, type sp., Sandaracinaceae

AB212873, Syntrophorhabdus aromaticivorans, type sp., Syntrophorhabdaceae

Bacteroidetes (835)

Flavobacteriaceae (391)
EU221275, Tamlana agarivorans, Flavobacteriaceae
AM286230, Tamlana crocina, type sp., Flavobacteriaceae
HQ336487, Postechiella marina, type sp., Flavobacteriaceae
DQ361033, Flaviramulus basaltis, type sp., Flavobacteriaceae
EF217419, Hyunsoonleella jejuensis, type sp., Flavobacteriaceae
EU443204, Jejuia pallidilutea, type sp., Flavobacteriaceae
HM475133, Snuella lapsa, type.sp, Flavobacteriaceae
EF108219, Gaetbulibacter marinus, Flavobacteriaceae
AY682382, Yeosuana aromativorans, type sp., Flavobacteriaceae
AJ628046, Mariniflexile fucanivorans, Flavobacteriaceae
DQ312294, Mariniflexile gromovii, type sp., Flavobacteriaceae
HQ144198, Mariniflexile aquimaris, Flavobacteriaceae
GU552681, Gaetbulibacter aestuarii, Flavobacteriaceae
AY883937, Gaetbulibacter saemankumensis, type sp., Flavobacteriaceae
AM491809, Algibacter mikhailovii, Flavobacteriaceae
HM475134, Pontirhabdus pectinivorans, type.sp, Flavobacteriaceae
AY187689, Algibacter lectus, type sp., Flavobacteriaceae
DQ167238, Lacinutrix algicola, Flavobacteriaceae
DQ167239, Lacinutrix mariniflava, Flavobacteriaceae
AY694001, Lacinutrix copepodicola, type sp., Flavobacteriaceae
FJ886713, Olleya aquimaris, Flavobacteriaceae
AB265181, Mesoflavibacter zeaxanthinifaciens, type sp., Flavobacteriaceae
HM475138, Flavivirga amylovorans, Flavobacteriaceae
HM475139, Flavivirga jejuensis, type sp., Flavobacteriaceae
DQ001321, Psychroserpens mesophilus, Flavobacteriaceae
U62913, Psychroserpens burtonensis, type sp., Flavobacteriaceae
 EU021217, Bizionia argentinensis, Flavobacteriaceae
AY694002, Bizionia myxarmorum, Flavobacteriaceae
AY694003, Bizionia algoritergicola, Flavobacteriaceae
AY693998, Subsaximicrobium saxinquilinus, Flavobacteriaceae
AY693997, Subsaximicrobium wynnwilliamsii, type sp., Flavobacteriaceae
FJ716799, Bizionia echini, Flavobacteriaceae
AY694004, Bizionia gelidisalsuginis, Flavobacteriaceae
AY694005, Bizionia saleffrena, Flavobacteriaceae
AY651070, Bizionia paragorgiae, type sp., Flavobacteriaceae
AY187688, Formosa agariphila, Flavobacteriaceae
AY228461, Formosa algae, type sp., Flavobacteriaceae
FJ348469, Formosa spongicola, Flavobacteriaceae
HQ257254, Corallibacter vietnamensis, type sp., Flavobacteriaceae
FJ360684, Meridianimaribacter flavus, type sp., Flavobacteriaceae
U64013, Winogradskyella rapida, Flavobacteriaceae
AB438962, Winogradskyella arenosi, Flavobacteriaceae
GQ181061, Winogradskyella pacifica, Flavobacteriaceae
AY521223, Winogradskyella thalassocola, type sp., Flavobacteriaceae
AY521224, Winogradskyella epiphytica, Flavobacteriaceae
AY521225, Winogradskyella eximia, Flavobacteriaceae
FJ919968, Winogradskyella lutea, Flavobacteriaceae
EU727254, Winogradskyella echinorum, Flavobacteriaceae
HQ456127, Winogradskyella ulvae, Flavobacteriaceae
AY848823, Winogradskyella poriferorum, Flavobacteriaceae
HM368527, Winogradskyella aquimaris, Flavobacteriaceae
FJ595484, Winogradskyella exilis, Flavobacteriaceae
U62914, Gelidibacter algens, type sp., Flavobacteriaceae
AF001369, Gelidibacter gilvus, Flavobacteriaceae
AJ344133, Gelidibacter mesophilus, Flavobacteriaceae
AY694009, Gelidibacter salicanalis, Flavobacteriaceae
AY693999, Subsaxibacter broadyi, type sp., Flavobacteriaceae
AB255369, Sediminibacter furfurosus, type sp., Flavobacteriaceae
AJ278780, Leeuwenhoekiella aequorea, Flavobacteriaceae
AF203475, Leeuwenhoekiella marinoflava, type sp., Flavobacteriaceae
FJ405187, Leeuwenhoekiella palythoae, Flavobacteriaceae
DQ294291, Leeuwenhoekiella blandensis, Flavobacteriaceae
CP002046, Croceibacter atlanticus, type sp., Flavobacteriaceae
AY445073, Muricauda flavescens, Flavobacteriaceae
AF218782, Muricauda ruestringensis, type sp., Flavobacteriaceae
EU156065, Muricauda lutimaris, Flavobacteriaceae
AY445075, Muricauda aquimarina, Flavobacteriaceae
EU888117, Muricauda olearia, Flavobacteriaceae
EU564844, Muricauda lutaonensis, Flavobacteriaceae
HM355805, Muricauda beolgyonensis, Flavobacteriaceae
DQ191182, Croceitalea dokdonensis, Flavobacteriaceae
DQ191183, Croceitalea eckloniae, type sp., Flavobacteriaceae
FJ348473, Spongiibacterium flavum, type sp., Flavobacteriaceae
DQ191180, Flagellimonas eckloniae, type sp., Flavobacteriaceae
DQ167246, Costertonia aggregata, type sp., Flavobacteriaceae
AB121974, Zobellia amurskyensis, Flavobacteriaceae
AB121975, Zobellia laminariae, Flavobacteriaceae
AB121976, Zobellia russellii, Flavobacteriaceae
M62799, Zobellia uliginosa, Flavobacteriaceae
AF208293, Zobellia galactanivorans, type sp., Flavobacteriaceae
AB084262, Kriegella aquimaris, type sp., Flavobacteriaceae
FN554868, Euzebyella saccharophila, type sp., Flavobacteriaceae
AB084261, Pseudozobellia thermophila, type sp., Flavobacteriaceae
EU443206, Muriicola jejuensis, type sp., Flavobacteriaceae
AB264057, Zeaxanthinibacter enoshimensis, type sp., Flavobacteriaceae
AM745437, Eudoraea adriatica, type sp., Flavobacteriaceae
CP001712, Robiginitalea biformata, type sp., Flavobacteriaceae
AB270585, Robiginitalea myxolifaciens, Flavobacteriaceae
AY960749, Maribacter dokdonensis, Flavobacteriaceae
AY271623, Maribacter sedimenticola, type sp., Flavobacteriaceae
EU246691, Maribacter stanieri, Flavobacteriaceae
AM712900, Maribacter forsetii, Flavobacteriaceae
AY271626, Maribacter ulvicola, Flavobacteriaceae
AY271624, Maribacter orientalis, Flavobacteriaceae
AY271625, Maribacter aquivivus, Flavobacteriaceae
AY576654, Pibocella ponti, type sp., Flavobacteriaceae
EU512921, Maribacter antarcticus, Flavobacteriaceae
AY771762, Maribacter arcticus, Flavobacteriaceae
AM497875, Maribacter polysiphoniae, Flavobacteriaceae
AJ575643, Arenibacter palladensis, Flavobacteriaceae
AB080771, Arenibacter troitsensis, Flavobacteriaceae
EF536748, Arenibacter echinorum, Flavobacteriaceae
AY271622, Arenibacter certesii, Flavobacteriaceae
AF052742, Arenibacter latericius, type sp., Flavobacteriaceae
EU999955, Arenibacter nanhaiticus, Flavobacteriaceae
AF001366, Cellulophaga algicola, Flavobacteriaceae
AJ005972, Cellulophaga baltica, Flavobacteriaceae
AB100840, Cellulophaga pacifica, Flavobacteriaceae
EU443205, Cellulophaga tyrosinoxydans, Flavobacteriaceae
AB206957, Sediminicola luteus, type sp., Flavobacteriaceae
CP002534, Cellulophaga lytica, type sp., Flavobacteriaceae
HQ596527, Cellulophaga geojensis, Flavobacteriaceae
AJ005973, Cellulophaga fucicola, Flavobacteriaceae
AY027806, Aequorivita crocea, Flavobacteriaceae
AY027805, Aequorivita lipolytica, Flavobacteriaceae
AY027802, Aequorivita antarctica, type sp., Flavobacteriaceae
EU290153, Aequorivita capsosiphonis, Flavobacteriaceae
AF170749, Aequorivita sublithincola, Flavobacteriaceae
EU642844, Vitellibacter aestuarii, Flavobacteriaceae
AB071382, Vitellibacter vladivostokensis, type sp., Flavobacteriaceae
AB261012, Marixanthomonas ophiurae, type sp., Flavobacteriaceae
EF554364, Ulvibacter antarcticus, Flavobacteriaceae
AY243096, Ulvibacter litoralis, type sp., Flavobacteriaceae
AB602429, Aureitalea marina, type sp., Flavobacteriaceae
AY608409, Gramella echinicola, type sp., Flavobacteriaceae
GQ857650, Gramella gaetbulicola, Flavobacteriaceae
DQ002871, Gramella portivictoriae, Flavobacteriaceae
AY753911, Gramella marina, Flavobacteriaceae
AF536383, Mesonia algae, type sp., Flavobacteriaceae
HM234095, Mesonia ostreae, Flavobacteriaceae
DQ367409, Mesonia mobilis, Flavobacteriaceae
FM882228, Mesonia phycicola , Flavobacteriaceae
DQ191176, Salegentibacter agarivorans, Flavobacteriaceae
AB116148, Salegentibacter holothuriorum, Flavobacteriaceae
M92279, Salegentibacter salegens, type sp., Flavobacteriaceae
EF486353, Salegentibacter salarius, Flavobacteriaceae
AY576653, Salegentibacter mishustinae, Flavobacteriaceae
EF612764, Salegentibacter salinarum, Flavobacteriaceae
AY682200, Salegentibacter flavus, Flavobacteriaceae
FR849911, Psychroflexus gondwanensis, Flavobacteriaceae
 U85881, Psychroflexus torquis, type sp., Flavobacteriaceae
EU135715, Psychroflexus sediminis, Flavobacteriaceae
AF513434, Psychroflexus tropicus, Flavobacteriaceae
EU874390, Psychroflexus salinarum, Flavobacteriaceae
FR714910, Psychroflexus halocasei, Flavobacteriaceae
DQ855467, Zunongwangia profunda, type sp., Flavobacteriaceae
EU135614, Salinimicrobium terrae, Flavobacteriaceae
EF520007, Salinimicrobium xinjiangense, Flavobacteriaceae
GQ866112, Salinimicrobium marinum, Flavobacteriaceae
JF340052, Salinimicrobium gaetbulicola, Flavobacteriaceae
DQ640642, Salinimicrobium catena, type sp., Flavobacteriaceae
AY694008, Gillisia illustrilutea, Flavobacteriaceae
AY694007, Gillisia sandarakina, Flavobacteriaceae
AJ440991, Gillisia limnaea, type sp., Flavobacteriaceae
DQ202393, Gillisia myxillae, Flavobacteriaceae
AY694006, Gillisia hiemivivida, Flavobacteriaceae
AY576655, Gillisia mitskevichiae, Flavobacteriaceae
FJ750453, Aquimarina agarilytica, Flavobacteriaceae
HM475137, Aquimarina addita, Flavobacteriaceae
AB517144, Aquimarina macrocephali, Flavobacteriaceae
AY608406, Aquimarina muelleri, type sp., Flavobacteriaceae
M58769, Aquimarina latercula, Flavobacteriaceae
AM113977, Aquimarina intermedia, Flavobacteriaceae
FJ882164, Aquimarina salinaria, Flavobacteriaceae
FJ348470, Aquimarina spongiae, Flavobacteriaceae
HM998910, Aquimarina mytili, Flavobacteriaceae
AY987367, Aquimarina brevivitae, Flavobacteriaceae
DQ003276, Dokdonia donghaensis, type sp., Flavobacteriaceae
AB198086, Dokdonia genika, type sp., Flavobacteriaceae
AB198089, Dokdonia diaphoros, Flavobacteriaceae
AB198088, Dokdonia eikasta, Flavobacteriaceae
AY581113, Flavobacterium antarcticum, Flavobacteriaceae
U85887, Flavobacterium tegetincola, Flavobacteriaceae
AJ440996, Flavobacterium gelidilacus, Flavobacteriaceae
GQ370387, Flavobacterium ponti, Flavobacteriaceae
AJ557887, Flavobacterium frigoris, Flavobacteriaceae
U85889, Flavobacterium gillisiae, Flavobacteriaceae
AJ557886, Flavobacterium degerlachei, Flavobacteriaceae
HQ436467, Flavobacterium urumqiense, Flavobacteriaceae
AF433173, Flavobacterium xinjiangense, Flavobacteriaceae
FJ654474, Flavobacterium sinopsychrotolerans, Flavobacteriaceae
AF030380, Flavobacterium xanthum, Flavobacteriaceae
AB075230, Flavobacterium limicola, Flavobacteriaceae
AB078060, Flavobacterium psychrophilum, Flavobacteriaceae
AM934651, Flavobacterium swingsii, Flavobacteriaceae
EU036219, Flavobacterium tiangeerense, Flavobacteriaceae
AF162266, Flavobacterium frigidarium, Flavobacteriaceae
AB455265, Flavobacterium algicola, Flavobacteriaceae
AJ811961, Flavobacterium fryxellicola, Flavobacteriaceae
AF433174, Flavobacterium omnivorum, Flavobacteriaceae
AJ585428, Flavobacterium psychrolimnae, Flavobacteriaceae
HQ436466, Flavobacterium xueshanense, Flavobacteriaceae
AJ557888, Flavobacterium micromati, Flavobacteriaceae
AM230490, Flavobacterium pectinovorum, Flavobacteriaceae
AB183888, Flavobacterium frigidimaris, Flavobacteriaceae
AM177392, Flavobacterium aquidurense, Flavobacteriaceae
FR774916, Flavobacterium araucananum, Flavobacteriaceae
AM230486, Flavobacterium flevense, Flavobacteriaceae
GQ148878, Flavobacterium myungsuense, Flavobacteriaceae
GQ144413, Flavobacterium yonginense, Flavobacteriaceae
AY581115, Flavobacterium segetis, Flavobacteriaceae
AY581114, Flavobacterium weaverense, Flavobacteriaceae
EU046269, Flavobacterium anhuiense, Flavobacteriaceae
GU564236, Flavobacterium phragmitis, Flavobacteriaceae
AJ318907, Flavobacterium denitrificans, Flavobacteriaceae
DQ372986, Flavobacterium defluvii, Flavobacteriaceae
AM230489, Flavobacterium johnsoniae, Flavobacteriaceae
M62792, Flexibacter aurantiacus, Cytophagaceae
GQ281770, Flavobacterium banpakuense, Flavobacteriaceae
GU138377, Flavobacterium ginsenosidimutans, Flavobacteriaceae
HM627539, Flavobacterium chungbukense, Flavobacteriaceae
GQ281769, Flavobacterium compostarboris, Flavobacteriaceae
DQ222427, Flavobacterium daejeonense, Flavobacteriaceae
EU672803, Flavobacterium glycines, Flavobacteriaceae
DQ178976, Flavobacterium soli, Flavobacteriaceae
EF575563, Flavobacterium resistens, Flavobacteriaceae
EU924275, Flavobacterium chungangense, Flavobacteriaceae
FR774915, Flavobacterium chilense, Flavobacteriaceae
FN669776, Flavobacterium oncorhynchi, Flavobacteriaceae
AM265623, Flavobacterium hercynium, Flavobacteriaceae
AM230491, Flavobacterium saccharophilum, Flavobacteriaceae
M58764, Flavobacterium hydatis, Flavobacteriaceae
L39067, Flavobacterium hibernum, Flavobacteriaceae
AM177616, Flavobacterium reichenbachii, Flavobacteriaceae
DQ515962, Flavobacterium glaciei, Flavobacteriaceae
EU109724, Flavobacterium fluvii, Flavobacteriaceae
AM230492, Flavobacterium succinicans, Flavobacteriaceae
AB180738, Flavobacterium granuli, Flavobacteriaceae
GU295968, Flavobacterium cheonanense, Flavobacteriaceae
GU295967, Flavobacterium koreense, Flavobacteriaceae
GU295971, Flavobacterium chungnamense, Flavobacteriaceae
FJ593904, Flavobacterium macrobrachii, Flavobacteriaceae
DQ889724, Flavobacterium terrigena, Flavobacteriaceae
AM230485, Flavobacterium aquatile, type sp., Flavobacteriaceae
EF407880, Flavobacterium cheniae, Flavobacteriaceae
EU423319, Flavobacterium sasangense, Flavobacteriaceae
EF126993, Flavobacterium cucumis, Flavobacteriaceae
DQ372982, Flavobacterium croceum, Flavobacteriaceae
DQ021903, Flavobacterium saliperosum, Flavobacteriaceae
EU521691, Flavobacterium cauense, Flavobacteriaceae
DQ222428, Flavobacterium suncheonense, Flavobacteriaceae
AB078047, Flavobacterium columnare, Flavobacteriaceae
EF117329, Flavobacterium terrae, Flavobacteriaceae
EU313814, Flavobacterium caeni, Flavobacteriaceae
EF424395, Flavobacterium lindanitolerans, Flavobacteriaceae
M58777, Myroides odoratus, type sp., Flavobacteriaceae
AB176662, Myroides pelagicus, Flavobacteriaceae
GU253339, Myroides phaeus, Flavobacteriaceae
AJ854059, Myroides odoratimimus, Flavobacteriaceae
EU204978, Myroides profundi, Flavobacteriaceae
GQ857652, Myroides marinus, Flavobacteriaceae
AM292800, Flavobacterium ceti, Flavobacteriaceae
AY904351, Flavobacterium indicum, Flavobacteriaceae
 GQ988780, Flavobacterium haoranii, Flavobacteriaceae
GU073293, Flavobacterium dongtanense, Flavobacteriaceae
AM934661, Flavobacterium rivuli, Flavobacteriaceae
AM934666, Flavobacterium subsaxonicum, Flavobacteriaceae
GQ245972, Flavobacterium beibuense, Flavobacteriaceae
DQ372981, Flavobacterium filum, Flavobacteriaceae
DQ009623, Capnocytophaga leadbetteri, Flavobacteriaceae
X67609, Capnocytophaga sputigena, Flavobacteriaceae
U41350, Capnocytophaga ochracea, type sp., Flavobacteriaceae
X97247, Capnocytophaga haemolytica, Flavobacteriaceae
AY643075, Capnocytophaga canimorsus, Flavobacteriaceae
AY643076, Capnocytophaga cynodegmi, Flavobacteriaceae
X67608, Capnocytophaga gingivalis, Flavobacteriaceae
U41347, Capnocytophaga granulosa, Flavobacteriaceae
Y17612, Coenonia anatina, type sp., Flavobacteriaceae
AB255367, Galbibacter mesophilus, type sp., Flavobacteriaceae
EF660761, Joostella marina, type sp., Flavobacteriaceae
DQ423479, Zhouia amylolytica, type sp., Flavobacteriaceae
FJ463655, Gangjinia marincola, type sp., Flavobacteriaceae
AB362212, Leptobacterium flavescens, type sp., Flavobacteriaceae
EU287913, Lutaonella thermophila, type sp., Flavobacteriaceae
AB255368, Gilvibacter sediminis, type sp., Flavobacteriaceae
HM475136, Nonlabens agnitus, Flavobacteriaceae
GU902979, Nonlabens ulvanivorans, Flavobacteriaceae
DQ017065, Nonlabens dokdonensis, Flavobacteriaceae
FR733714, Nonlabens xylanidelens, type sp., Flavobacteriaceae
DQ064789, Nonlabens spongiae, type sp., Flavobacteriaceae
AY987349, Nonlabens tegetincola, type sp., Flavobacteriaceae
AB206954, Nonlabens sediminis, type sp., Flavobacteriaceae
AY195836, Kordia algicida, type sp., Flavobacteriaceae
GU233518, Kordia periserrulae, Flavobacteriaceae
AB294107, Fulvibacter tottoriensis, type sp., Flavobacteriaceae
EU239499, Aestuariicola saemankumensis, type sp., Flavobacteriaceae
EF108218, Lutimonas vermicola, type sp., Flavobacteriaceae
EF670651, Actibacter sediminis, type sp., Flavobacteriaceae
AM411030, Tenacibaculum discolor, Flavobacteriaceae
AY962294, Tenacibaculum litoreum, Flavobacteriaceae
AM746477, Tenacibaculum gallaicum, Flavobacteriaceae
AM412314, Tenacibaculum adriaticum, Flavobacteriaceae
EU428783, Tenacibaculum crassostreae, Flavobacteriaceae
AY661691, Tenacibaculum lutimaris, Flavobacteriaceae
AB032505, Tenacibaculum amylolyticum, Flavobacteriaceae
AF469612, Tenacibaculum skagerrakense, Flavobacteriaceae
AB032501, Tenacibaculum mesophilum, Flavobacteriaceae
AB078058, Tenacibaculum ovolyticum, Flavobacteriaceae
FN545354, Tenacibaculum dicentrarchi, Flavobacteriaceae
AM746476, Tenacibaculum soleae, Flavobacteriaceae
EF416572, Tenacibaculum aiptasiae, Flavobacteriaceae
DQ314760, Tenacibaculum aestuarii, Flavobacteriaceae
HQ401023, Tenacibaculum geojense, Flavobacteriaceae
FJ490366, Tenacibaculum jejuense, Flavobacteriaceae
DQ822567, Tenacibaculum litopenaei, Flavobacteriaceae
AY189722, Polaribacter butkevichii, Flavobacteriaceae
M61002, Polaribacter irgensii, Flavobacteriaceae
U73726, Polaribacter filamentus, type sp., Flavobacteriaceae
U14586, Polaribacter franzmannii, Flavobacteriaceae
DQ004686, Polaribacter dokdonensis, Flavobacteriaceae
AB078057, Tenacibaculum maritimum, type sp., Flavobacteriaceae
FJ425213, Polaribacter gangjinensis, Flavobacteriaceae
AY962293, Lutibacter litoralis, type sp., Flavobacteriaceae
FJ598048, Lutibacter maritimus , Flavobacteriaceae
HM234096, Lutibacter aestuarii, Flavobacteriaceae
EU290161, Maritimimonas rapanae, type sp., Flavobacteriaceae
EF204460, Epilithonimonas lactis , Flavobacteriaceae
AF493696, Epilithonimonas tenax, type sp., Flavobacteriaceae
DQ166169, Chryseobacterium xinjiangense, Flavobacteriaceae
EU869190, Chryseobacterium piscicola, Flavobacteriaceae
AM748690, Chryseobacterium aquaticum, Flavobacteriaceae
FJ932652, Chryseobacterium greenlandense, Flavobacteriaceae
EU999735, Chryseobacterium piperi, Flavobacteriaceae
EF591302, Chryseobacterium soli, Flavobacteriaceae
GU138380, Chryseobacterium ginsenosidimutans, Flavobacteriaceae
AY883415, Chryseobacterium soldanellicola, Flavobacteriaceae
AY468447, Chryseobacterium balustinum, Flavobacteriaceae
AM040439, Chryseobacterium piscium, Flavobacteriaceae
AJ271009, Chryseobacterium scophthalmum, Flavobacteriaceae
AY468448, Chryseobacterium indoltheticum, Flavobacteriaceae
EF076759, Chryseobacterium daeguense, Flavobacteriaceae
AM773820, Chryseobacterium gregarium, Flavobacteriaceae
DQ673672, Chryseobacterium hagamense, Flavobacteriaceae
AY883416, Chryseobacterium taeanense, Flavobacteriaceae
AJ843132, Chryseobacterium taichungense, Flavobacteriaceae
DQ318789, Chryseobacterium taiwanense, Flavobacteriaceae
DQ256729, Chryseobacterium wanjuense, Flavobacteriaceae
AJ457206, Chryseobacterium daecheongense, Flavobacteriaceae
AJ309324, Chryseobacterium defluvii, Flavobacteriaceae
AM232810, Chryseobacterium gambrini, Flavobacteriaceae
AY315443, Chryseobacterium formosense, Flavobacteriaceae
AM489609, Chryseobacterium luteum, Flavobacteriaceae
AB193101, Chryseobacterium shigense, Flavobacteriaceae
AJ871397, Chryseobacterium vrystaatense, Flavobacteriaceae
DQ673671, Chryseobacterium elymi, Flavobacteriaceae
DQ673674, Chryseobacterium lathyri, Flavobacteriaceae
EF204451, Chryseobacterium oranimense, Flavobacteriaceae
DQ673670, Chryseobacterium rhizosphaerae, Flavobacteriaceae
FN674441, Chryseobacterium oncorhynchi, Flavobacteriaceae
AM232806, Chryseobacterium ureilyticum, Flavobacteriaceae
AJ271010, Chryseobacterium joostei, Flavobacteriaceae
EF591303, Chryseobacterium jejuense, Flavobacteriaceae
HM212415, Chryseobacterium vietnamense, Flavobacteriaceae
EF644913, Chryseobacterium aquifrigidense, Flavobacteriaceae
EF154516, Chryseobacterium flavum, Flavobacteriaceae
AM232812, Chryseobacterium gleum, type sp., Flavobacteriaceae
FN398101, Chryseobacterium arthrosphaerae, Flavobacteriaceae
AM232813, Chryseobacterium indologenes, Flavobacteriaceae
FN554975, Chryseobacterium culicis, Flavobacteriaceae
DQ336714, Chryseobacterium caeni, Flavobacteriaceae
EF685359, Chryseobacterium hungaricum, Flavobacteriaceae
AM159183, Chryseobacterium hispanicum, Flavobacteriaceae
EF204446, Chryseobacterium bovis, Flavobacteriaceae
AM261868, Chryseobacterium hominis, Flavobacteriaceae
GQ259742, Chryseobacterium yonginense, Flavobacteriaceae
GU345045, Chryseobacterium chaponense, Flavobacteriaceae
EU360967, Chryseobacterium palustre, Flavobacteriaceae
 AY553293, Chryseobacterium antarcticum, Flavobacteriaceae
AY553294, Chryseobacterium jeonii, Flavobacteriaceae
FN297836, Chryseobacterium treverense, Flavobacteriaceae
EU516352, Chryseobacterium solincola, Flavobacteriaceae
AM982786, Chryseobacterium anthropi, Flavobacteriaceae
AF344179, Chryseobacterium koreense, Flavobacteriaceae
EF204450, Chryseobacterium haifense, Flavobacteriaceae
EU360966, Chryseobacterium humi, Flavobacteriaceae
EF554366, Chryseobacterium marinum, Flavobacteriaceae
AM232809, Chryseobacterium pallidum, Flavobacteriaceae
AJ534853, Chryseobacterium molle, Flavobacteriaceae
AJ575430, Cloacibacterium normanense, type sp., Flavobacteriaceae
EU581834, Cloacibacterium rupense, Flavobacteriaceae
U60101, Riemerella anatipestifer, type sp., Flavobacteriaceae
AF181448, Riemerella columbina, Flavobacteriaceae
EU718058, Planobacterium taklimakanense, type sp., Flavobacteriaceae
FJ713810, Soonwooa buanensis, type sp., Flavobacteriaceae
EF426425, Elizabethkingia anophelis, type sp., Flavobacteriaceae
AB071953, Elizabethkingia miricola, Flavobacteriaceae
AJ704540, Elizabethkingia meningoseptica, type sp., Flavobacteriaceae
AM177497, Empedobacter brevis, type sp., Flavobacteriaceae
AM084341, Wautersiella falsenii, type sp., Flavobacteriaceae
CP002455, Weeksella virosa, type sp., Flavobacteriaceae
U87101, Ornithobacterium rhinotracheale, type sp., Flavobacteriaceae

FJ424814, Wandonia haliotis , Cryomorphaceae

AF493694, Fluviicola taffensis, type sp., Cryomorphaceae
AF521195, Brumimicrobium glaciale, type sp., Cryomorphaceae
AB176674, Lishizhenia caseinilytica, type sp., Cryomorphaceae
EU183317, Lishizhenia tianjinensis, Cryomorphaceae
AB078042, Crocinitomix catalasitica, type sp., Cryomorphaceae

Bacteroidales (143)

Bacteroidaceae and Prevotellaceae (89)

Prevotellaceae (50)
X81877, Hallella seregens, type sp., Prevotellaceae
X81876, Prevotella dentalis, Prevotellaceae
AY350613, Prevotella bergensis, Prevotellaceae
AY840553, Prevotella baroniae, Prevotellaceae
L16477, Prevotella buccae, Prevotellaceae
AB477014, Prevotella dentasini, Prevotellaceae
AY323524, Prevotella denticola, Prevotellaceae
AB182483, Prevotella multiformis, Prevotellaceae
FJ545433, Prevotella fusca, Prevotellaceae
FJ545434, Prevotella scopos, Prevotellaceae
CP002122, Prevotella melaninogenica, type sp., Prevotellaceae
L16473, Prevotella veroralis, Prevotellaceae
EU126661, Prevotella histicola, Prevotellaceae
EF534314, Prevotella maculosa, Prevotellaceae
L16474, Prevotella oris, Prevotellaceae
AB108826, Prevotella salivae, Prevotellaceae
AJ011683, Prevotella albensis, Prevotellaceae
L16472, Prevotella oulorum, Prevotellaceae
AB064923, Prevotella copri, Prevotellaceae
AB429504, Prevotella falsenii, Prevotellaceae
X73963, Prevotella nigrescens, Prevotellaceae
X73965, Prevotella intermedia, Prevotellaceae
AB480534, Prevotella aurantiaca , Prevotellaceae
Y13105, Prevotella pallens, Prevotellaceae
L16483, Prevotella disiens, Prevotellaceae
L16465, Prevotella corporis, Prevotellaceae
AM422125, Prevotella amnii, Prevotellaceae
L16475, Prevotella bivia, Prevotellaceae
AB078827, Prevotella paludivivens, Prevotellaceae
AY836508, Prevotella loescheii, Prevotellaceae
AB108825, Prevotella shahii, Prevotellaceae
AF481227, Prevotella marshii, Prevotellaceae
FJ825149, Prevotella saccharolytica, Prevotellaceae
AY323522, Prevotella oralis, Prevotellaceae
AJ005635, Prevotella enoeca, Prevotellaceae
AB278593, Prevotella pleuritidis, Prevotellaceae
AB244774, Prevotella stercorea, Prevotellaceae
L16476, Prevotella buccalis, Prevotellaceae
DQ518919, Prevotella timonensis, Prevotellaceae
AF481228, Prevotella micans, Prevotellaceae
AY957555, Prevotella nanceiensis, Prevotellaceae
AJ011682, Prevotella brevis, Prevotellaceae
L16482, Prevotella ruminicola, Prevotellaceae
AB200414, Prevotella multisaccharivorax, Prevotellaceae
AJ006457, Prevotella bryantii, Prevotellaceae
AB078826, Xylanibacter oryzae, type sp., Prevotellaceae
AJ005634, Prevotella tannerae, Prevotellaceae
AB331896, Paraprevotella clara, type sp., Prevotellaceae
AB331897, Paraprevotella xylaniphila, Prevotellaceae
EU694176, Phocaeicola abscessus, type sp., Unclassified Bacteroidales

AB253731, Bacteroides salanitronis, Bacteroidaceae

AB253726, Bacteroides barnesiae, Bacteroidaceae
AB260026, Bacteroides coprophilus, Bacteroidaceae
AB200224, Bacteroides coprocola, Bacteroidaceae
AB200217, Bacteroides plebeius, Bacteroidaceae
AB242142, Bacteroides dorei, Bacteroidaceae
AJ867050, Bacteroides vulgatus, Bacteroidaceae
AY126616, Bacteroides massiliensis, Bacteroidaceae
GQ456204, Bacteroides sartorii, Bacteroidaceae
AB298727, Bacteroides paurosaccharolyticus, Bacteroidaceae
AB200227, Bacteroides helcogenes, Bacteroidaceae
L16487, Prevotella heparinolytica, Prevotellaceae
L16488, Prevotella zoogleoformans, Prevotellaceae
AB490802, Bacteroides fluxus, Bacteroidaceae
AB531489, Bacteroides rodentium, Bacteroidaceae
AB050110, Bacteroides uniformis, Bacteroidaceae
AB363973, Bacteroides graminisolvens, Bacteroidaceae
AY608696, Bacteroides salyersiae, Bacteroidaceae
AY608697, Bacteroides nordii, Bacteroidaceae
AE015928, Bacteroides thetaiotaomicron , Bacteroidaceae
GQ496624, Bacteroides faecis, Bacteroidaceae
AB200229, Bacteroides pyogenes, Bacteroidaceae
AB222699, Bacteroides finegoldii, Bacteroidaceae
AB021164, Bacteroides acidifaciens, Bacteroidaceae
AB574480, Bacteroides faecichinchillae, Bacteroidaceae
X83951, Bacteroides caccae, Bacteroidaceae
AB050108, Bacteroides ovatus, Bacteroidaceae
 AM230650, Bacteroides xylanisolvens, Bacteroidaceae
CR626927, Bacteroides fragilis , type sp., Bacteroidaceae
AB490803, Bacteroides oleiciplenus, Bacteroidaceae
AB574481, Bacteroides stercorirosoris, Bacteroidaceae
AJ583243, Bacteroides cellulosilyticus, Bacteroidaceae
AB214328, Bacteroides intestinalis, Bacteroidaceae
AB490801, Bacteroides clarus, Bacteroidaceae
AB253732, Bacteroides gallinarum, Bacteroidaceae
X83953, Bacteroides stercoris, Bacteroidaceae
AB050107, Bacteroides eggerthii, Bacteroidaceae
AF319778, Bacteroides coprosuis, Bacteroidaceae
AB264625, Bacteroides propionicifaciens, Bacteroidaceae

Porphyromonadaceae (31)
L26102, Porphyromonas circumdentaria, Porphyromonadaceae
GU233445, Porphyromonas gingivicanis, Porphyromonadaceae
AY253728, Porphyromonas endodontalis, Porphyromonadaceae
L16490, Porphyromonas asaccharolytica, type sp., Porphyromonadaceae
AY570514, Porphyromonas uenonis, Porphyromonadaceae
L16494, Porphyromonas macacae, Porphyromonadaceae
L16493, Porphyromonas levii, Porphyromonadaceae
AY968205, Porphyromonas somerae, Porphyromonadaceae
EU414673, Porphyromonas bennonis, Porphyromonadaceae
X76259, Porphyromonas cangingivalis, Porphyromonadaceae
AB525416, Porphyromonas canoris, Porphyromonadaceae
X76260, Porphyromonas cansulci, Porphyromonadaceae
GU233446, Porphyromonas crevioricanis, Porphyromonadaceae
AB035459, Porphyromonas gingivalis, Porphyromonadaceae
AF208290, Porphyromonas gulae, Porphyromonadaceae
X82823, Porphyromonas catoniae, Porphyromonadaceae
AB035460, Tannerella forsythia, type sp., Porphyromonadaceae
AB261128, Parabacteroides johnsonii, Porphyromonadaceae
AB238928, Parabacteroides merdae, Porphyromonadaceae
AB238922, Parabacteroides distasonis, type sp., Porphyromonadaceae
AY974070, Parabacteroides goldsteinii, Porphyromonadaceae
AB470343, Parabacteroides gordonii, Porphyromonadaceae
Y18530, Dysgonomonas gadei, type sp., Porphyromonadaceae
FN356023, Dysgonomonas hofstadii, Porphyromonadaceae
AJ319867, Dysgonomonas mossii, Porphyromonadaceae
AY570690, Petrimonas sulfuriphila, type sp., Porphyromonadaceae
AY742226, Proteiniphilum acetatigenes, type sp., Porphyromonadaceae
U41355, Dysgonomonas capnocytophagoides, Porphyromonadaceae
AB078842, Paludibacter propionicigenes, type sp., Porphyromonadaceae
AB370251, Barnesiella intestinihominis, Porphyromonadaceae
AB267809, Barnesiella viscericola, type sp., Porphyromonadaceae

AB443948, Butyricimonas synergistica, type sp., Porphyromonadaceae

AB443949, Butyricimonas virosa, Porphyromonadaceae
AY560020, Odoribacter denticanis, Porphyromonadaceae
AB490805, Odoribacter laneus, Porphyromonadaceae
L16496, Odoribacter splanchnicus, type sp., Porphyromonadaceae
HQ697914, Mangroviflexus xiamenensis, type sp., Marinilabiliaceae
AB362265, Geofilum rubicundum, type sp., Marinilabiliaceae
GQ922844, Natronoflexus pectinivorans, type sp., Marinilabiliaceae
FR733683, Cytophaga xylanolytica, Cytophagaceae
AJ418048, Anaerophaga thermohalophila, type sp., Marinilabiliaceae
AB517713, Marinilabilia salmonicolor, type sp., Marinilabiliaceae
AJ784993, Alkaliflexus imshenetskii, type sp., Marinilabiliaceae
GU269545, Meniscus glaucopis, type sp., Cytophagaceae
AY918928, Prolixibacter bellariivorans, type sp., Unclassified Bacteroidetes
GQ200190, Sunxiuqinia elliptica, type sp., Unclassified Bacteroidales
FJ394546, Marinifilum fragile, type sp., Unclassified Bacteroidetes
M58766, Cytophaga fermentans, Cytophagaceae

Rikenellaceae (6)
AY643083, Alistipes finegoldii, Rikenellaceae
AY974072, Alistipes shahii, Rikenellaceae
L16497, Alistipes putredinis, type sp., Rikenellaceae
AY974071, Alistipes onderdonkii, Rikenellaceae
AB490804, Alistipes indistinctus, Rikenellaceae
L16498, Rikenella microfusus, type sp., Rikenellaceae

Cryomorphaceae (3)
AB125062, Owenweeksia hongkongensis, type sp., Cryomorphaceae
HQ172900, Schleiferia thermophila, Schleiferiaceae
AF170738, Cryomorpha ignava, type sp., Cryomorphaceae

Chitinophagaceae (37)
FJ177532, Ferruginibacter lapsinanis, Chitinophagaceae
FJ177530, Ferruginibacter alkalilentus, type sp., Chitinophagaceae
EU521690, Lacibacter cauensis, type sp., Chitinophagaceae
HM130561, Flavitalea populi, type sp., Chitinophagaceae
AB267476, Flavisolibacter ginsengiterrae, type sp., Chitinophagaceae
AB267477, Flavisolibacter ginsengisoli, Chitinophagaceae
DQ244077, Niastella koreensis, type sp., Chitinophagaceae
DQ244076, Niastella yeongjuensis, Chitinophagaceae
EU877262, Niastella populi , Chitinophagaceae
DQ457019, Niabella aurantiaca, type sp., Chitinophagaceae
GU291295, Niabella tibetensis, Chitinophagaceae
EF592608, Niabella soli, Chitinophagaceae
EU616816, Niabella ginsengisoli, Chitinophagaceae
FJ457040, Niabella yanshanensis, Chitinophagaceae
AM230484, Terrimonas ferruginea, type sp., Chitinophagaceae
FJ347757, Terrimonas aquatica, Chitinophagaceae
AB192292, Terrimonas lutea, Chitinophagaceae
AB267478, Segetibacter koreensis, type sp., Chitinophagaceae
GQ421847, Segetibacter aerophilus, Chitinophagaceae
FN665659, Hydrotalea flava, type sp., Chitinophagaceae
EF407879, Sediminibacterium salmoneum, type sp., Chitinophagaceae
AB362776, Filimonas lacunae, type sp., Chitinophagaceae
EU877263, Parasegetibacter luojiensis, type sp., Chitinophagaceae
EU854577, Flavihumibacter petaseus, type sp., Chitinophagaceae
AM237311, Chitinophaga arvensicola, Chitinophagaceae
AB264798, Chitinophaga ginsengisegetis, Chitinophagaceae
EU714260, Chitinophaga niastensis, Chitinophagaceae
FJ750951, Chitinophaga eiseniae, Chitinophagaceae
AB278570, Chitinophaga terrae, Chitinophagaceae
AB078055, Chitinophaga japonensis, Chitinophagaceae
FM865977, Chitinophaga rupis, Chitinophagaceae
AB078049, Chitinophaga filiformis, Chitinophagaceae
AB245374, Chitinophaga ginsengisoli, Chitinophagaceae
AF078775, Chitinophaga pinensis, type sp., Chitinophagaceae
DQ062743, Chitinophaga skermanii, Chitinophagaceae
 AB078066, Chitinophaga sancti, Chitinophagaceae
EU714259, Chitinophaga niabensis, Chitinophagaceae

Saprospiraceae (10)
EF554367, Lewinella antarctica, Saprospiraceae
AB301494, Lewinella lutea, Saprospiraceae
AM286229, Lewinella agarilytica, Saprospiraceae
AB301495, Lewinella marina, Saprospiraceae
AF039295, Lewinella persica, Saprospiraceae
AF039292, Lewinella cohaerens, type sp., Saprospiraceae
AF039294, Lewinella nigricans, Saprospiraceae
AJ784892, Haliscomenobacter hydrossis, type sp., Saprospiraceae
AB245933, Aureispira marina, type sp., Saprospiraceae
AB278130, Aureispira maritima, Saprospiraceae

Sphingobacteriaceae (86)
AM491371, Pedobacter hartonius, Sphingobacteriaceae
AM491369, Pedobacter westerhofensis, Sphingobacteriaceae
AJ438174, Pedobacter piscium, Sphingobacteriaceae
HM448033, Sphingobacterium antarcticum, Sphingobacteriaceae
AJ438170, Pedobacter cryoconitis, Sphingobacteriaceae
AJ583425, Pedobacter himalayensis, Sphingobacteriaceae
EF100697, Pedobacter insulae, Sphingobacteriaceae
DQ092871, Pedobacter koreensis, Sphingobacteriaceae
HM640986, Pedobacter boryungensis, Sphingobacteriaceae
AB245371, Pedobacter ginsengisoli, Sphingobacteriaceae
AJ786798, Pedobacter caeni, Sphingobacteriaceae
AM491372, Pedobacter steynii, Sphingobacteriaceae
AM491368, Pedobacter duraquae, Sphingobacteriaceae
AM491370, Pedobacter metabolipauper, Sphingobacteriaceae
AJ438171, Pedobacter africanus, Sphingobacteriaceae
AJ438172, Pedobacter heparinus, type sp., Sphingobacteriaceae
AB245368, Pedobacter panaciterrae, Sphingobacteriaceae
EU030686, Pedobacter nyackensis, Sphingobacteriaceae
AM114396, Pedobacter aquatilis, Sphingobacteriaceae
EU030688, Pedobacter alluvionis, Sphingobacteriaceae
DQ112353, Pedobacter roseus, Sphingobacteriaceae
DQ235228, Pedobacter sandarakinus, Sphingobacteriaceae
EF660751, Pedobacter agri, Sphingobacteriaceae
AM279215, Pedobacter soli, Sphingobacteriaceae
EU030687, Pedobacter borealis, Sphingobacteriaceae
DQ097274, Pedobacter suwonensis, Sphingobacteriaceae
DQ889723, Pedobacter terrae, Sphingobacteriaceae
AM279214, Pedobacter rhizosphaerae, Sphingobacteriaceae
AB264126, Nubsella zeaxanthinifaciens, type sp., Sphingobacteriaceae
AB267722, Pedobacter daechungensis, Sphingobacteriaceae
EF446146, Pedobacter lentus, Sphingobacteriaceae
EF446147, Pedobacter terricola, Sphingobacteriaceae
HM051286, Pedobacter arcticus, Sphingobacteriaceae
AJ438173, Pedobacter saltans, Sphingobacteriaceae
EU585748, Pedobacter glucosidilyticus, Sphingobacteriaceae
AJ438175, Flavobacterium mizutaii, Flavobacteriaceae
AB249372, Sphingobacterium daejeonense, Sphingobacteriaceae
FN908501, Sphingobacterium lactis, Sphingobacteriaceae
GQ339910, Sphingobacterium bambusae, Sphingobacteriaceae
FJ816788, Sphingobacterium shayense, Sphingobacteriaceae
GQ988781, Sphingobacterium wenxiniae, Sphingobacteriaceae
AB244764, Sphingobacterium composti, Sphingobacteriaceae
FN908502, Sphingobacterium alimentarium, Sphingobacteriaceae
JF731241, Sphingobacterium nematocida, Sphingobacteriaceae
EF090267, Sphingobacterium spiritivorum, type sp., Sphingobacteriaceae
AB100738, Sphingobacterium multivorum, Sphingobacteriaceae
EU046272, Sphingobacterium siyangense, Sphingobacteriaceae
AY787820, Sphingobacterium canadense, Sphingobacteriaceae
AJ438177, Sphingobacterium thalpophilum, Sphingobacteriaceae
EU364817, Sphingobacterium anhuiense, Sphingobacteriaceae
AB361248, Sphingobacterium kitahiroshimense, Sphingobacteriaceae
AJ438176, Sphingobacterium faecium, Sphingobacteriaceae
AB267716, Olivibacter ginsengisoli, Sphingobacteriaceae
AB267714, Olivibacter terrae, Sphingobacteriaceae
AB267715, Olivibacter soli, Sphingobacteriaceae
AM407725, Pseudosphingobacterium domesticum, type sp., Sphingobacteriaceae
DQ680836, Parapedobacter koreensis, type sp., Sphingobacteriaceae
EF151805, Parapedobacter soli, Sphingobacteriaceae
FJ754320, Parapedobacter luteus, Sphingobacteriaceae
DQ421387, Olivibacter sitiensis, type sp., Sphingobacteriaceae
HM021726, Olivibacter oleidegradans, Sphingobacteriaceae
GQ161990, Pedobacter bauzanensis, Sphingobacteriaceae
AB267720, Pedobacter composti, Sphingobacteriaceae
EU109726, Pedobacter oryzae, Sphingobacteriaceae
HM627214, Mucilaginibacter angelicae, Sphingobacteriaceae
HM748604, Mucilaginibacter polysacchareus, Sphingobacteriaceae
EU672804, Mucilaginibacter gossypii, Sphingobacteriaceae
EU672805, Mucilaginibacter gossypiicola, Sphingobacteriaceae
EU109722, Mucilaginibacter oryzae, Sphingobacteriaceae
AB330392, Mucilaginibacter kameinonensis, Sphingobacteriaceae
GQ144415, Mucilaginibacter myungsuensis, Sphingobacteriaceae
EU729366, Mucilaginibacter ximonensis, Sphingobacteriaceae
AB267719, Mucilaginibacter composti, Sphingobacteriaceae
GU139697, Mucilaginibacter dorajii, Sphingobacteriaceae
AM490403, Mucilaginibacter gracilis, Sphingobacteriaceae
AM490402, Mucilaginibacter paludis, type sp., Sphingobacteriaceae
HM061614, Mucilaginibacter boryungensis, Sphingobacteriaceae
FN400859, Mucilaginibacter mallensis, Sphingobacteriaceae
DQ234446, Mucilaginibacter lappiensis, Sphingobacteriaceae
JF701183, Mucilaginibacter soli, Sphingobacteriaceae
HQ455786, Mucilaginibacter lutimaris, Sphingobacteriaceae
EU747841, Mucilaginibacter rigui, Sphingobacteriaceae
FN400860, Mucilaginibacter frigoritolerans, Sphingobacteriaceae
AB267717, Mucilaginibacter daejeonensis, Sphingobacteriaceae
AB078046, Solitalea canadensis, Sphingobacteriaceae
EU787448, Solitalea koreensis, type sp., Sphingobacteriaceae

Cytophagaceae and Cyclobacteriaceae (81)

Cyclobacteriaceae (37)
AJ744861, Aquiflexum balticum, type sp., Cyclobacteriaceae
FN421478, Fontibacter flavus, type sp., Cyclobacteriaceae
FM883672, Indibacter alkaliphilus, type sp., Cyclobacteriaceae
EU685336, Belliella pelovolcani, Cyclobacteriaceae
AJ564643, Belliella baltica, type sp., Cyclobacteriaceae
FM991866, Nitritalea halalkaliphila, type sp., Cyclobacteriaceae
DQ112660, Rhodonellum psychrophilum, type sp., Cytophagaceae
GU254164, Litoribacter ruber, type sp., Cytophagaceae
 AY960985, Cyclobacterium amurskyense, Cyclobacteriaceae
AY533665, Cyclobacterium marinum, type sp., Cyclobacteriaceae
DQ534063, Cyclobacterium lianum, Cyclobacteriaceae
DQ185611, Echinicola pacifica, type sp., Cyclobacteriaceae
DQ645421, Echinicola vietnamensis, Cyclobacteriaceae
GU339180, Echinicola jeungdonensis, Cyclobacteriaceae
AY533663, Algoriphagus marincola, Cyclobacteriaceae
EF488486, Algoriphagus hitonicola, Cyclobacteriaceae
EF392675, Algoriphagus vanfongensis, Cyclobacteriaceae
AY264840, Algoriphagus ornithinivorans, Cyclobacteriaceae
GU072591, Algoriphagus faecimaris, Cyclobacteriaceae
HQ401024, Algoriphagus namhaensis, Cyclobacteriaceae
AJ575265, Algoriphagus chordae, Cyclobacteriaceae
AY835922, Algoriphagus locisalis, Cyclobacteriaceae
AJ575263, Algoriphagus winogradskyi, Cyclobacteriaceae
AY699794, Algoriphagus yeomjeoni, Cyclobacteriaceae
AJ575264, Algoriphagus aquimarinus, Cyclobacteriaceae
AJ608641, Algoriphagus ratkowskyi, type sp., Cyclobacteriaceae
AJ577141, Algoriphagus antarcticus, Cyclobacteriaceae
AY264839, Algoriphagus halophilus, Cyclobacteriaceae
FJ669216, Algoriphagus lutimaris, Cyclobacteriaceae
AB197852, Algoriphagus boritolerans, Cyclobacteriaceae
EF217418, Algoriphagus jejuensis, Cyclobacteriaceae
DQ178979, Algoriphagus terrigena, Cyclobacteriaceae
AJ717393, Algoriphagus alkaliphilus, Cyclobacteriaceae
EU161637, Algoriphagus aquaeductus, Cyclobacteriaceae
EU313811, Algoriphagus aquatilis, Cyclobacteriaceae
AY264838, Algoriphagus mannitolivorans, Cyclobacteriaceae
FJ231215, Algoriphagus olei, Cyclobacteriaceae

HM140980, Mongoliitalea lutea, type sp., Cyclobacteriaceae

EU360597, Dyadobacter alkalitolerans, Cytophagaceae
GQ131577, Dyadobacter psychrophilus, Cytophagaceae
AB245369, Dyadobacter ginsengisoli, Cytophagaceae
EF017660, Dyadobacter koreensis, Cytophagaceae
AB272165, Persicitalea jodogahamensis, type sp., Cytophagaceae
AJ619978, Dyadobacter hamtensis, Cytophagaceae
AJ821885, Dyadobacter crusticola, Cytophagaceae
DQ335125, Dyadobacter beijingensis, Cytophagaceae
GQ241324, Dyadobacter soli, Cytophagaceae
AF137029, Dyadobacter fermentans, type sp., Cytophagaceae
DQ372980, Runella defluvii, Cytophagaceae
DQ372985, Runella limosa, Cytophagaceae
AF137381, Runella zeae, Cytophagaceae
M62786, Runella slithyformis, type sp., Cytophagaceae
AM000023, Spirosoma linguale, type sp., Cytophagaceae
EF507900, Spirosoma rigui, Cytophagaceae
EF451726, Spirosoma luteum, Cytophagaceae
EF451725, Spirosoma spitsbergense, Cytophagaceae
EU370956, Spirosoma panaciterrae, Cytophagaceae
GQ355622, Fibrisoma limi, type sp., Cytophagaceae
GQ141052, Fibrella aestuarina, type sp., Cytophagaceae
EF635010, Rudanella lutea, type sp., Cytophagaceae
FN391025, Larkinella arboricola, Cytophagaceae
AM000022, Larkinella insperata, type sp., Cytophagaceae
GQ246692, Larkinella bovis, Cytophagaceae
AJ535729, Arcicella aquatica, type sp., Cytophagaceae
AM948969, Arcicella rosea, Cytophagaceae
FJ593908, Arcicella aurantiaca, Cytophagaceae
M62787, Flectobacillus major, type sp., Cytophagaceae
EU420062, Flectobacillus roseus, Cytophagaceae
DQ112352, Flectobacillus lacus, Cytophagaceae
FJ177421, Siphonobacter aquaeclarae, type sp., Cytophagaceae
AB245370, Emticicia ginsengisoli, Cytophagaceae
AY904352, Emticicia oligotrophica, type sp., Cytophagaceae
AY854022, Leadbetterella byssophila, type sp., Cytophagaceae
AB078065, Flexibacter ruber, Cytophagaceae
GU117702, Ohtaekwangia koreensis, type sp., Unclassified Bacteroidetes
GU117703, Ohtaekwangia kribbensis, Unclassified Bacteroidetes
M62794, Flexibacter flexilis, type sp., Cytophagaceae
D12658, Cytophaga aurantiaca, Cytophagaceae
CP000383, Cytophaga hutchinsonii , type sp., Cytophagaceae
AJ310654, Sporocytophaga myxococcoides, type sp., Cytophagaceae
EU004198, Rhodocytophaga aerolata, type sp., Cytophagaceae

FN396961, Cesiribacter andamanensis, type sp., Flammeovirgaceae

HM775387, Cesiribacter roseus, Flammeovirgaceae
AB078072, Marivirga tractuosa, type sp., Flammeovirgaceae
AB078081, Marivirga sericea, Flammeovirgaceae
AB058919, Reichenbachiella agariperforans, type sp., Flammeovirgaceae
GU143096, Reichenbachiella faecimaris, Flammeovirgaceae
DQ836305, Fulvivirga kasyanovii, type sp., Flammeovirgaceae
DQ080995, Fabibacter halotolerans, type sp., Flammeovirgaceae
DQ080996, Roseivirga spongicola, Flammeovirgaceae
AY753206, Roseivirga echinicomitans, Flammeovirgaceae
AY608410, Roseivirga ehrenbergii, type sp., Flammeovirgaceae
AB078079, Marinoscillum furvescens, Flammeovirgaceae
DQ660388, Marinoscillum pacificum, type sp., Flammeovirgaceae
AM746475, Ekhidna lutea, type sp., Cytophagaceae
AB078048, Flexibacter elegans, Cytophagaceae
AB078062, Flexibacter roseolus, Cytophagaceae
AB078080, Microscilla marina, type sp., Cytophagaceae

Flammeovirgaceae (13)
AB247553, Flammeovirga aprica, type sp., Flammeovirgaceae
AB078078, Flammeovirga arenaria, Flammeovirgaceae
AB251933, Flammeovirga kamogawensis, Flammeovirgaceae
HQ412594, Flammeovirga pacifica, Flammeovirgaceae
AB247554, Flammeovirga yaeyamensis, Flammeovirgaceae
AB276355, Perexilibacter aurantiacus, type sp., Flammeovirgaceae
AB359907, Limibacter armeniacum, type sp., Flammeovirgaceae
AB255370, Sediminitomix flava, type sp., Flammeovirgaceae
AB078077, Flexithrix dorotheae, type sp., Flammeovirgaceae
AB265192, Rapidithrix thailandica, type sp., Flammeovirgaceae
AB260929, Persicobacter diffluens, type sp., Flammeovirgaceae
AB260934, Persicobacter psychrovividus, Flammeovirgaceae
AB572584, Aureibacter tunicatorum, type.sp, Flammeovirgaceae

AB078056, Flexibacter litoralis, Cytophagaceae

AB078059, Flexibacter polymorphus, Cytophagaceae
Y08956, Thermonema rossianum, Flammeovirgaceae
EU155012, Hymenobacter antarcticus, Cytophagaceae
GQ454806, Hymenobacter glaciei, Cytophagaceae
AB251884, Hymenobacter soli, Cytophagaceae
HM032898, Hymenobacter metalli, Cytophagaceae
 HM032897, Hymenobacter flocculans, Cytophagaceae
DQ888329, Hymenobacter xinjiangensis, Cytophagaceae
DQ089669, Hymenobacter rigui, Cytophagaceae
HM032896, Hymenobacter perfusus, Cytophagaceae
Y18836, Hymenobacter gelipurpurascens, Cytophagaceae
GU808562, Hymenobacter yonginensis, Cytophagaceae
DQ177475, Hymenobacter psychrotolerans, Cytophagaceae
AJ276901, Hymenobacter aerophilus, Cytophagaceae
GQ131579, Hymenobacter psychrophilus, Cytophagaceae
Y17356, Hymenobacter actinosclerus, Cytophagaceae
AJ549285, Hymenobacter norwichensis, Cytophagaceae
Y18837, Hymenobacter chitinivorans, Cytophagaceae
GQ454797, Hymenobacter elongatus, Cytophagaceae
Y18833, Hymenobacter roseosalivarius, type sp., Cytophagaceae
EU155009, Hymenobacter algoricola, Cytophagaceae
EU155015, Hymenobacter fastidiosus, Cytophagaceae
EU370958, Hymenobacter daecheongensis, Cytophagaceae
EU325941, Hymenobacter deserti, Cytophagaceae
Y18835, Hymenobacter ocellatus, Cytophagaceae
EU682684, Adhaeribacter terreus, Cytophagaceae
AJ626894, Adhaeribacter aquaticus, type sp., Cytophagaceae
GQ421846, Adhaeribacter aerolatus, Cytophagaceae
GQ421850, Adhaeribacter aerophilus, Cytophagaceae
FJ897494, Pontibacter niistensis, Cytophagaceae
HQ223078, Pontibacter populi, Cytophagaceae
DQ888330, Pontibacter korlensis, Cytophagaceae
AM049256, Pontibacter roseus, Cytophagaceae
AY989908, Pontibacter actiniarum, type sp., Cytophagaceae
DQ672723, Pontibacter akesuensis, Cytophagaceae
FJ004994, Pontibacter xinjiangensis, Cytophagaceae
EU008564, Balneola alkaliphila, Chitinophagaceae
AY576749, Balneola vulgaris, type sp., Chitinophagaceae
EF988655, Gracilimonas tropica, type sp., Chitinophagaceae
HM153810, Fodinibius salinus, type sp., Unclassified Sphingobacteriales

Rhodothermaceae (7)
HQ197982, Salinibacter iranicus, Rhodothermaceae
HQ197983, Salinibacter luteus, Rhodothermaceae
CP000159, Salinibacter ruber, type sp., Rhodothermaceae
EU426570, Salisaeta longa, type sp., Rhodothermaceae
AB545808, Rubricoccus marinus, type sp., Rhodothermaceae
X80994, Rhodothermus marinus, type sp., Rhodothermaceae
FJ624399, Rhodothermus profundi, Rhodothermaceae

Chlorobi (12)

Chlorobia or Chlorobea (11)

Y08108, Chlorobium clathratiforme, Chlorobiaceae
CP000492, Chlorobium phaeobacteroides , Chlorobiaceae
CP001097, Chlorobium limicola, type sp., Chlorobiaceae
Y08105, Chlorobium phaeovibrioides, Chlorobiaceae
CP000096, Chlorobium luteolum, Chlorobiaceae
M58468, Chlorobaculum tepidum, type sp., Chlorobiaceae
Y08102, Chlorobaculum thiosulfatiphilum, Chlorobiaceae
Y10649, Chlorobium chlorovibrioides, Chlorobiaceae
CP001108, Prosthecochloris aestuarii, type sp., Chlorobiaceae
M62791, Prosthecochloris vibrioformis, Chlorobiaceae
AF170103, Chloroherpeton thalassium, type sp., Chlorobiaceae

AB478415, Ignavibacterium album, type sp., Ignavibacteriaceae

Verrucomicrobia (34)

Rubritaleaceae (6)
AB297805, Rubritalea spongiae, Rubritaleaceae
AB297806, Rubritalea tangerina, Rubritaleaceae
DQ302104, Rubritalea marina, type sp., Rubritaleaceae
AB543683, Rubritalea halochordaticola, Rubritaleaceae
AB277853, Rubritalea squalenifaciens, Rubritaleaceae
AB353310, Rubritalea sabuli, Rubritaleaceae

AB331886, Persicirhabdus sediminis, type sp., Verrucomicrobiaceae

AB331888, Roseibacillus ishigakijimensis, type sp., Verrucomicrobiaceae
AB331889, Roseibacillus ponti, Verrucomicrobiaceae
AB331890, Roseibacillus persicicus, Verrucomicrobiaceae
AB372852, Haloferula harenae, Verrucomicrobiaceae
AB372853, Haloferula rosea, type sp., Verrucomicrobiaceae
AB372854, Haloferula phyci, Verrucomicrobiaceae
AB372855, Haloferula helveola, Verrucomicrobiaceae
AB372856, Haloferula sargassicola, Verrucomicrobiaceae
FJ032193, Haloferula luteola, Verrucomicrobiaceae
AB331893, Luteolibacter algae, Verrucomicrobiaceae
AB331895, Luteolibacter pohnpeiensis, type sp., Verrucomicrobiaceae
AY271254, Akkermansia muciniphila, type sp., Akkermansiaceae

Verrucomicrobiaceae (6)
U60014, Prosthecobacter debontii, Verrucomicrobiaceae
U60015, Prosthecobacter fusiformis, type sp., Verrucomicrobiaceae
U60012, Prosthecobacter dejongeii, Verrucomicrobiaceae
AB305640, Prosthecobacter fluviatilis, Verrucomicrobiaceae
U60013, Prosthecobacter vanneervenii, Verrucomicrobiaceae
X90515, Verrucomicrobium spinosum, type sp., Verrucomicrobiaceae

Puniceicoccaceae and Opitutaceae (9)

AB286016, Pelagicoccus albus, Puniceicoccaceae
AB286017, Pelagicoccus litoralis, Puniceicoccaceae
AB286015, Pelagicoccus mobilis, type sp., Puniceicoccaceae
AB297922, Pelagicoccus croceus, Puniceicoccaceae

Opitutaceae (2)
AF075271, Alterococcus agarolyticus, type sp., Opitutaceae
AJ229235, Opitutus terrae, type sp., Opitutaceae

AB292183, Cerasicoccus arenae, type sp., Puniceicoccaceae

DQ539046, Puniceicoccus vermicola, type sp., Puniceicoccaceae
AB266750, Coraliomargarita akajimensis, type sp., Puniceicoccaceae

Lentisphaerae (2)
AY390428, Lentisphaera araneosa, type sp., Lentisphaeraceae
AY049713, Victivallis vadensis, type sp., Victivallaceae

Chlamydiae (13)

Chlamydiaceae (9)
D85709, Chlamydophila abortus, Chlamydiaceae
 D85708, Chlamydophila caviae, Chlamydiaceae
U68447, Chlamydophila psittaci, type sp., Chlamydiaceae
D85701, Chlamydophila felis, Chlamydiaceae
D89067, Chlamydia trachomatis, type sp., Chlamydiaceae
U73110, Chlamydia suis, Chlamydiaceae
D85718, Chlamydia muridarum, Chlamydiaceae
D88317, Chlamydophila pecorum, Chlamydiaceae
Z49873, Chlamydophila pneumoniae, Chlamydiaceae

Parachlamydiaceae (2)
AF177275, Neochlamydia hartmannellae, type sp., Parachlamydiaceae
Y07556, Parachlamydia acanthamoebae, type sp., Parachlamydiaceae

U68460, Simkania negevensis, type sp., Simkaniaceae

AF042496, Waddlia chondrophila, type sp., Waddliaceae

Planctomycetes (15)
AM850678, Singulisphaera acidiphila, type sp., Planctomycetaceae
FN391026, Singulisphaera rosea, Planctomycetaceae
DQ986200, Aquisphaera giovannonii, type sp., Planctomycetaceae
CP002353, Isosphaera pallida, type sp., Planctomycetaceae
AM162406, Zavarzinella formosa, type sp., Planctomycetaceae
JN880417, Telmatocola sphagniphila, type sp., Planctomycetaceae
X56305, Gemmata obscuriglobus, type sp., Planctomycetaceae
X62912, Blastopirellula marina, type sp., Planctomycetaceae
CP001848, Pirellula staleyi, Planctomycetaceae
BX294149, Rhodopirellula baltica, type sp., Planctomycetaceae
CP002546, Planctomyces brasiliensis, Planctomycetaceae
AJ231184, Planctomyces maris, Planctomycetaceae
X62911, Planctomyces limnophilus, Planctomycetaceae
AM162407, Schlesneria paludicola, type sp., Planctomycetaceae
AB447464, Phycisphaera mikurensis, type sp., Phycisphaeraceae

Fibrobacteres (3)
GU269553, Fibrobacter succinogenes subsp. elongatus, Fibrobacteraceae
AJ496032, Fibrobacter succinogenes subsp. succinogenes, type sp., Fibrobacteraceae
AJ496284, Fibrobacter intestinalis, Fibrobacteraceae

AB072735, Gemmatimonas aurantiaca, type sp., Gemmatimonadaceae

AJ430587, Caldithrix abyssi, type sp., Unclassified Deferribacterales
FJ999729, Caldithrix palaeochoryensis, Unclassified Deferribacterales

Deinococcus−Thermus (74)

Deinococcales (48)

Deinococcaceae (47)
AB087288, Deinococcus aerius, Deinococcaceae
AB087287, Deinococcus aetherius, Deinococcaceae
AY743264, Deinococcus apachensis, Deinococcaceae
CP000359, Deinococcus geothermalis , Deinococcaceae
Y13041, Deinococcus murrayi, Deinococcaceae
AY743262, Deinococcus hopiensis, Deinococcaceae
AJ585981, Deinococcus frigens, Deinococcaceae
AJ585984, Deinococcus saxicola, Deinococcaceae
AJ585986, Deinococcus marmoris, Deinococcaceae
Y11334, Deinococcus radiopugnans, Deinococcaceae
EU622978, Deinococcus aerolatus, Deinococcaceae
EU622979, Deinococcus aerophilus, Deinococcaceae
DQ344634, Deinococcus yunweiensis, Deinococcaceae
DQ017708, Deinococcus aquaticus, Deinococcaceae
AB264134, Deinococcus depolymerans, Deinococcaceae
DQ017709, Deinococcus caeni, Deinococcaceae
Y11332, Deinococcus radiodurans, type sp., Deinococcaceae
EU025028, Deinococcus wulumuqiensis, Deinococcaceae
AJ549111, Deinococcus indicus, Deinococcaceae
Y11329, Deinococcus grandis, Deinococcaceae
JF806527, Deinococcus daejeonensis, Deinococcaceae
AY743256, Deinococcus hohokamensis, Deinococcaceae
AY743259, Deinococcus navajonensis, Deinococcaceae
AY876378, Deinococcus deserti, Deinococcaceae
AM940971, Deinococcus aquatilis, Deinococcaceae
AY941086, Deinococcus ficus, Deinococcaceae
EU427464, Deinococcus gobiensis, Deinococcaceae
HM214546, Deinococcus reticulitermitis, Deinococcaceae
EU626561, Deinococcus xinjiangensis, Deinococcaceae
DQ683348, Deinococcus piscis, Deinococcaceae
Y11331, Deinococcus proteolyticus, Deinococcaceae
Y11333, Deinococcus radiophilus, Deinococcaceae
EF635408, Deinococcus alpinitundrae, Deinococcaceae
AB265180, Deinococcus aquiradiocola, Deinococcaceae
EF635406, Deinococcus claudionis, Deinococcaceae
EF635407, Deinococcus altitudinis, Deinococcaceae
EF635404, Deinococcus radiomollis, Deinococcaceae
AY743283, Deinococcus sonorensis, Deinococcaceae
AY743274, Deinococcus maricopensis, Deinococcaceae
DQ883809, Deinococcus cellulosilyticus, Deinococcaceae
AB264136, Deinococcus roseus, Deinococcaceae
AB264135, Deinococcus misasensis, Deinococcaceae
AY743280, Deinococcus papagonensis, Deinococcaceae
AY743279, Deinococcus yavapaiensis, Deinococcaceae
EF141348, Deinococcus peraridilitoris, Deinococcaceae
AY743277, Deinococcus pimensis, Deinococcaceae
AM988777, Deinobacterium chartae, type sp., Deinococcaceae

DQ022076, Truepera radiovictrix, type sp., Trueperaceae

Thermaceae (26)
EU247889, Thermus arciformis, Thermaceae
EU753247, Thermus islandicus, Thermaceae
L09663, Thermus aquaticus, type sp., Thermaceae
Z15062, Thermus brockianus, Thermaceae
Y18406, Thermus igniterrae, Thermaceae
Y18411, Thermus antranikianii, Thermaceae
AF032127, Thermus scotoductus, Thermaceae
EU701067, Thermus composti, Thermaceae
X07998, Thermus thermophilus, Thermaceae
FR749951, Thermus filiformis, Thermaceae
Y18416, Thermus oshimai, Thermaceae
EU247891, Meiothermus cateniformans, Thermaceae
AF418001, Meiothermus taiwanensis, Thermaceae
Z15059, Meiothermus ruber, type sp., Thermaceae
Y13594, Meiothermus cerbereus, Thermaceae
FN178496, Meiothermus rufus, Thermaceae
GU584097, Meiothermus granaticius, Thermaceae
 AB586707, Meiothermus hypogaeus, Thermaceae
X84212, Meiothermus chliarophilus, Thermaceae
AJ871168, Meiothermus timidus, Thermaceae
CP002042, Meiothermus silvanus, Thermaceae
AB079382, Marinithermus hydrothermalis, type sp., Thermaceae
AB107956, Oceanithermus desulfurans, Thermaceae
AJ430586, Oceanithermus profundus, type sp., Thermaceae
HM856631, Rhabdothermus arcticus, type sp., Thermaceae
AJ507298, Vulcanithermus mediatlanticus, type sp., Thermaceae

Nitrospira (8)
X96726, Thermodesulfovibrio islandicus, Nitrospiraceae
AB231858, Thermodesulfovibrio yellowstonii, type sp., Nitrospiraceae
AB231857, Thermodesulfovibrio thiophilus, Nitrospiraceae
AB021302, Thermodesulfovibrio aggregans, Nitrospiraceae
EF081294, Thermodesulfovibrio hydrogeniphilus, Nitrospiraceae
AF356829, Leptospirillum ferriphilum, Nitrospiraceae
X86776, Leptospirillum ferrooxidans, type sp., Nitrospiraceae
X82558, Nitrospira moscoviensis, Nitrospiraceae

Actinobacteria (2449)

Micrococcaceae and Bifidobacteriaceae (157)

Bifidobacteriaceae (53)
M58733, Bifidobacterium coryneforme, Bifidobacteriaceae
D86188, Bifidobacterium indicum, Bifidobacteriaceae
FJ858731, Bifidobacterium actinocoloniiforme, Bifidobacteriaceae
EF187235, Bifidobacterium asteroides, Bifidobacteriaceae
EU127549, Bifidobacterium bombi, Bifidobacteriaceae
GU361834, Bifidobacterium thermophilum, Bifidobacteriaceae
AY148470, Bifidobacterium thermacidophilum subsp. porcinum, Bifidobacteriaceae
AB016246, Bifidobacterium thermacidophilum subsp. thermacidophilum, Bifidobacteriaceae
D86190, Bifidobacterium boum, Bifidobacteriaceae
AB613259, Bifidobacterium reuteri, Bifidobacteriaceae
D89332, Scardovia inopinata, type sp., Bifidobacteriaceae
AY278626, Scardovia wiggsiae, Bifidobacteriaceae
D89331, Parascardovia denticolens, type sp., Bifidobacteriaceae
AM419460, Alloscardovia omnicolens, type sp., Bifidobacteriaceae
AB241105, Metascardovia criceti, type sp., Bifidobacteriaceae
AY174107, Aeriscardovia aeriphila, type sp., Bifidobacteriaceae
AB241106, Bifidobacterium tsurumiense, Bifidobacteriaceae
AP009256, Bifidobacterium adolescentis , Bifidobacteriaceae
FJ611793, Bifidobacterium stercoris, Bifidobacteriaceae
D86197, Bifidobacterium ruminantium, Bifidobacteriaceae
D86182, Bifidobacterium angulatum, Bifidobacteriaceae
D86192, Bifidobacterium merycicum, Bifidobacteriaceae
AB559503, Bifidobacterium callitrichos, Bifidobacteriaceae
AF432082, Bifidobacterium catenulatum, Bifidobacteriaceae
D86187, Bifidobacterium pseudocatenulatum, Bifidobacteriaceae
D86183, Bifidobacterium dentium, Bifidobacteriaceae
AB425276, Bifidobacterium kashiwanohense, Bifidobacteriaceae
AB559505, Bifidobacterium stellenboschense, Bifidobacteriaceae
AB559506, Bifidobacterium biavatii, Bifidobacteriaceae
AJ307005, Bifidobacterium scardovii, Bifidobacteriaceae
U25952, Bifidobacterium bifidum, type sp., Bifidobacteriaceae
AB050136, Bifidobacterium animalis subsp. lactis, Bifidobacteriaceae
D86185, Bifidobacterium animalis subsp. animalis, Bifidobacteriaceae
D86186, Bifidobacterium choerinum, Bifidobacteriaceae
D86194, Bifidobacterium pseudolongum subsp. globosum, Bifidobacteriaceae
D86195, Bifidobacterium pseudolongum subsp. pseudolongum, Bifidobacteriaceae
D86193, Bifidobacterium magnum, Bifidobacteriaceae
GU361818, Bifidobacterium cuniculi, Bifidobacteriaceae
D86189, Bifidobacterium gallicum, Bifidobacteriaceae
M58739, Bifidobacterium longum subsp. longum, Bifidobacteriaceae
M58743, Bifidobacterium longum subsp. suis, Bifidobacteriaceae
D86184, Bifidobacterium longum subsp. infantis, Bifidobacteriaceae
AB559504, Bifidobacterium saguini, Bifidobacteriaceae
AB006658, Bifidobacterium breve, Bifidobacteriaceae
D86191, Bifidobacterium gallinarum, Bifidobacteriaceae
D89328, Bifidobacterium saeculare, Bifidobacteriaceae
D86196, Bifidobacterium pullorum, Bifidobacteriaceae
M58744, Gardnerella vaginalis, type sp., Bifidobacteriaceae
D89378, Bifidobacterium subtile, Bifidobacteriaceae
M58741, Bifidobacterium minimum, Bifidobacteriaceae
FJ858736, Bifidobacterium bohemicum, Bifidobacteriaceae
AB433856, Bifidobacterium mongoliense, Bifidobacteriaceae
AY174108, Bifidobacterium psychraerophilum, Bifidobacteriaceae

EU086805, Arthrobacter sanguinis, Micrococcaceae

AJ812213, Acaricomes phytoseiuli, type sp., Micrococcaceae
AF180950, Renibacterium salmoninarum, type sp., Micrococcaceae
AB071950, Arthrobacter russicus, Micrococcaceae
GQ406811, Arthrobacter livingstonensis, Micrococcaceae
GU784867, Arthrobacter cryoconiti, Micrococcaceae
AJ640198, Arthrobacter stackebrandtii, Micrococcaceae
GQ227413, Arthrobacter alpinus, Micrococcaceae
AB588633, Arthrobacter psychrochitiniphilus, Micrococcaceae
AF134179, Arthrobacter psychrolactophilus, Micrococcaceae
AM176541, Arthrobacter phenanthrenivorans, Micrococcaceae
X80741, Arthrobacter polychromogenes, Micrococcaceae
X83408, Arthrobacter oxydans, Micrococcaceae
AF330692, Arthrobacter scleromae, Micrococcaceae
AJ278870, Arthrobacter roseus, Micrococcaceae
AM409361, Arthrobacter defluvii, Micrococcaceae
AB248526, Arthrobacter niigatensis, Micrococcaceae
FN673551, Arthrobacter equi, Micrococcaceae
AF102267, Arthrobacter chlorophenolicus, Micrococcaceae
AF235091, Arthrobacter sulfonivorans, Micrococcaceae
AM039435, Arthrobacter ramosus, Micrococcaceae
X80744, Arthrobacter ureafaciens, Micrococcaceae
X80743, Arthrobacter nicotinovorans, Micrococcaceae
X83406, Arthrobacter histidinolovorans, Micrococcaceae
JQ955626, Corynebacterium ilicis, Corynebacteriaceae
X83407, Arthrobacter ilicis, Micrococcaceae
X83405, Arthrobacter aurescens, Micrococcaceae
AJ512504, Arthrobacter nitroguajacolicus, Micrococcaceae
AJ639826, Arthrobacter castelli, Micrococcaceae
AJ639827, Arthrobacter pigmenti, Micrococcaceae
AJ315070, Arthrobacter monumenti, Micrococcaceae
X80737, Arthrobacter citreus, Micrococcaceae
AJ316140, Arthrobacter gandavensis, Micrococcaceae
AY116496, Arthrobacter koreensis, Micrococcaceae
 AJ243422, Arthrobacter luteolus, Micrococcaceae
AB248527, Arthrobacter alkaliphilus, Micrococcaceae
AF235090, Arthrobacter methylotrophus, Micrococcaceae
AB279890, Arthrobacter humicola, Micrococcaceae
AB279889, Arthrobacter oryzae, Micrococcaceae
AJ639830, Arthrobacter parietis, Micrococcaceae
AJ315069, Arthrobacter tumbae, Micrococcaceae
DQ097525, Arthrobacter subterraneus, Micrococcaceae
AJ639829, Arthrobacter tecti, Micrococcaceae
AB537168, Arthrobacter flavus, Micrococcaceae
X80748, Arthrobacter agilis, Micrococcaceae
X80740, Arthrobacter pascens, Micrococcaceae
X80736, Arthrobacter globiformis, type sp., Micrococcaceae
X93353, Arthrobacter woluwensis, Micrococcaceae
AJ616763, Arthrobacter psychrophenolicus, Micrococcaceae
X83409, Arthrobacter sulfureus, Micrococcaceae
AJ606062, Arthrobacter kerguelensis, Micrococcaceae
AM931709, Arthrobacter antarcticus, Micrococcaceae
AJ606061, Arthrobacter gangotriensis, Micrococcaceae
Y15885, Arthrobacter rhombi, Micrococcaceae
DQ372937, Zhihengliuella halotolerans, type sp., Micrococcaceae
EU847536, Zhihengliuella alba, Micrococcaceae
GQ406812, Arthrobacter cryotolerans, Micrococcaceae
AJ617482, Arthrobacter mysorens, Micrococcaceae
X83410, Arthrobacter uratoxydans, Micrococcaceae
X80739, Arthrobacter nicotianae, Micrococcaceae
AJ609628, Arthrobacter arilaitensis, Micrococcaceae
AJ551163, Arthrobacter ardleyensis, Micrococcaceae
AJ609630, Arthrobacter bergerei, Micrococcaceae
X80745, Arthrobacter protophormiae, Micrococcaceae
EF660748, Arthrobacter soli, Micrococcaceae
D88211, Arthrobacter creatinolyticus, Micrococcaceae
AY376164, Citricoccus alkalitolerans, Micrococcaceae
AJ344143, Citricoccus muralis, type sp., Micrococcaceae
FM992367, Citricoccus parietis, Micrococcaceae
EU305672, Citricoccus zhacaiensis , Micrococcaceae
GU797177, Citricoccus nitrophenolicus, Micrococcaceae
DQ491453, Micrococcus flavus, Micrococcaceae
AJ536198, Micrococcus luteus, type sp., Micrococcaceae
FJ214355, Micrococcus yunnanensis, Micrococcaceae
AJ005932, Micrococcus antarcticus, Micrococcaceae
EU005372, Micrococcus endophyticus, Micrococcaceae
X80750, Micrococcus lylae, Micrococcaceae
FJ423763, Micrococcus terreus, Micrococcaceae
FN673681, Micrococcus lactis, Micrococcaceae
EU939716, Zhihengliuella aestuarii, Micrococcaceae
AB248533, Sinomonas albida, Micrococcaceae
X80746, Sinomonas atrocyanea, Micrococcaceae
HQ605707, Sinomonas soli, Micrococcaceae
EU370704, Sinomonas flava, type sp., Micrococcaceae
AB248531, Sinomonas echigonensis, Micrococcaceae
AY684123, Yaniella flava, Micrococcaceae
AY228479, Yaniella halotolerans, type sp., Micrococcaceae
FJ871122, Yaniella fodinae, Micrococcaceae
FN554542, Auritidibacter ignavus, type sp., Micrococcaceae
AJ243421, Arthrobacter albus, Micrococcaceae
X93354, Arthrobacter cumminsii, Micrococcaceae
AY226510, Nesterenkonia xinjiangensis, Micrococcaceae
EU566871, Nesterenkonia alba, Micrococcaceae
AY574575, Nesterenkonia aethiopica, Micrococcaceae
EF680886, Nesterenkonia flava, Micrococcaceae
AJ290397, Nesterenkonia lacusekhoensis, Micrococcaceae
X80747, Nesterenkonia halobia, type sp., Micrococcaceae
AY820953, Nesterenkonia halophila, Micrococcaceae
AY226508, Nesterenkonia halotolerans, Micrococcaceae
AY588277, Nesterenkonia sandarakina, Micrococcaceae
AY928901, Nesterenkonia jeotgali, Micrococcaceae
AY588278, Nesterenkonia lutea, Micrococcaceae
AJ292364, Arthrobacter nasiphocae, Micrococcaceae
X80738, Arthrobacter crystallopoietes, Micrococcaceae

Brevibacteriaceae (24)
AJ620364, Brevibacterium picturae, Brevibacteriaceae
FN293377, Brevibacterium sandarakinum, Brevibacteriaceae
AM421807, Brevibacterium marinum, Brevibacteriaceae
AY243344, Brevibacterium antiquum, Brevibacteriaceae
X76566, Brevibacterium aurantiacum, Brevibacteriaceae
AY228463, Brevibacterium celere, Brevibacteriaceae
AJ564859, Brevibacterium sanguinis, Brevibacteriaceae
AJ251418, Brevibacterium casei, Brevibacteriaceae
Y17962, Brevibacterium avium, Brevibacteriaceae
AM158906, Brevibacterium oceani, Brevibacteriaceae
X76565, Brevibacterium epidermidis, Brevibacteriaceae
X83813, Brevibacterium iodinum, Brevibacteriaceae
X77451, Brevibacterium linens, type sp., Brevibacteriaceae
AY243343, Brevibacterium permense, Brevibacteriaceae
AJ488509, Brevibacterium luteolum, Brevibacteriaceae
AF133534, Brevibacterium otitidis, Brevibacteriaceae
X93594, Brevibacterium mcbrellneri, Brevibacteriaceae
AJ251463, Brevibacterium paucivorans, Brevibacteriaceae
EU086793, Brevibacterium ravenspurgense, Brevibacteriaceae
EU868814, Brevibacterium massiliense, Brevibacteriaceae
DQ344485, Brevibacterium samyangense, Brevibacteriaceae
EU484189, Brevibacterium pityocampae, Brevibacteriaceae
EF158852, Brevibacterium album, Brevibacteriaceae
GU117109, Brevibacterium salitolerans, Brevibacteriaceae

AJ622907, Kocuria carniphila, Micrococcaceae

EU286964, Kocuria gwangalliensis, Micrococcaceae
AY211385, Kocuria marina, Micrococcaceae
GQ352404, Kocuria salsicia, Micrococcaceae
X87754, Kocuria varians, Micrococcaceae
Y16264, Kocuria rhizophila, Micrococcaceae
FJ607311, Kocuria atrinae, Micrococcaceae
Y16263, Kocuria palustris, Micrococcaceae
AB071952, Rothia aeria, Micrococcaceae
M59055, Rothia dentocariosa, type sp., Micrococcaceae
X87758, Rothia mucilaginosa, Micrococcaceae
AJ131121, Rothia nasimurium, Micrococcaceae
DQ822568, Rothia terrae, Micrococcaceae
AY043359, Rothia amarae, Micrococcaceae
DQ979377, Kocuria halotolerans, Micrococcaceae
FJ607312, Kocuria koreensis, Micrococcaceae
X80749, Kocuria kristinae, Micrococcaceae
 EF602041, Kocuria flava, Micrococcaceae
AJ278868, Kocuria polaris, Micrococcaceae
X87756, Kocuria rosea, type sp., Micrococcaceae
AY987383, Kocuria himachalensis, Micrococcaceae
DQ059617, Kocuria aegyptia, Micrococcaceae
DQ531634, Kocuria turfanensis, Micrococcaceae

Dermabacteraceae (17)
AB537169, Brachybacterium conglomeratum, Dermabacteraceae
AJ415377, Brachybacterium paraconglomeratum, Dermabacteraceae
X83810, Brachybacterium faecium, type sp., Dermabacteraceae
EU937750, Brachybacterium saurashtrense, Dermabacteraceae
AJ415384, Brachybacterium sacelli, Dermabacteraceae
X91031, Brachybacterium alimentarium, Dermabacteraceae
X91657, Brachybacterium tyrofermentans, Dermabacteraceae
AJ415378, Brachybacterium fresconis, Dermabacteraceae
X91034, Dermabacter hominis, type sp., Dermabacteraceae
EU477050, Helcobacillus massiliensis, type sp., Dermabacteraceae
EU009865, Devriesea agamarum, type sp., Dermabacteraceae
DQ822566, Brachybacterium phenoliresistens, Dermabacteraceae
EF125186, Brachybacterium zhongshanense, Dermabacteraceae
GQ339911, Brachybacterium squillarum, Dermabacteraceae
AJ537574, Brachybacterium muris, Dermabacteraceae
AJ415376, Brachybacterium rhamnosum, Dermabacteraceae
X91033, Brachybacterium nesterenkovii, Dermabacteraceae

Demequinaceae (7)
AB471559, Demequina salsinemoris, Demequinaceae
AB522643, Demequina globuliformis, Demequinaceae
AB522641, Demequina aurantiaca, Demequinaceae
AB522640, Demequina oxidasica, Demequinaceae
EF451745, Demequina lutea, Demequinaceae
DQ010160, Demequina aestuarii, type sp., Demequinaceae
AB639012, Lysinimicrobium mangrovi, type sp., Demequinaceae

Actinomycetaceae (59)
X80414, Actinomyces gerencseriae, Actinomycetaceae
X82450, Actinomyces israelii, Actinomycetaceae
EF558367, Actinomyces massiliensis, Actinomycetaceae
AJ697609, Actinomyces dentalis, Actinomycetaceae
DQ072005, Actinomyces ruminicola, Actinomycetaceae
AJ507295, Actinomyces oricola, Actinomycetaceae
X80411, Actinomyces howellii, Actinomycetaceae
AB545935, Actinomyces oris, Actinomycetaceae
X82453, Actinomyces viscosus, Actinomycetaceae
X81062, Actinomyces naeslundii, Actinomycetaceae
AB545933, Actinomyces johnsonii, Actinomycetaceae
AJ234039, Actinomyces bowdenii, Actinomycetaceae
AJ234066, Actinomyces slackii, Actinomycetaceae
X80412, Actinomyces denticolens, Actinomycetaceae
EU484334, Actinomyces timonensis, Actinomycetaceae
X81061, Actinomyces bovis, type sp., Actinomycetaceae
FN552454, Actinomyces weissii, Actinomycetaceae
AJ243791, Actinomyces urogenitalis, Actinomycetaceae
AJ276805, Actinomyces catuli, Actinomycetaceae
AJ251986, Actinomyces radicidentis, Actinomycetaceae
AJ540309, Actinomyces graevenitzii, Actinomycetaceae
Y08828, Actinomyces europaeus, Actinomycetaceae
FJ617539, Actinomyces hominis, Actinomycetaceae
AJ249326, Actinomyces coleocanis, Actinomycetaceae
AM084228, Actinomyces neuii subsp. neuii, Actinomycetaceae
AM084229, Actinomyces neuii subsp. anitratus, Actinomycetaceae
AJ428402, Varibaculum cambriense, type sp., Actinomycetaceae
AJ427624, Mobiluncus curtisii subsp. holmesii, Actinomycetaceae
AJ318408, Mobiluncus curtisii subsp. curtisii, type sp., Actinomycetaceae
AJ318410, Mobiluncus mulieris, Actinomycetaceae
FJ234421, Actinomyces naturae, Actinomycetaceae
X78719, Actinomyces radingae, Actinomycetaceae
X69616, Actinomyces hyovaginalis, Actinomycetaceae
AJ277385, Actinomyces suimastitidis, Actinomycetaceae
AJ404889, Actinomyces funkei, Actinomycetaceae
X80413, Actinomyces georgiae, Actinomycetaceae
X82451, Actinomyces meyeri, Actinomycetaceae
AJ234040, Actinomyces odontolyticus, Actinomycetaceae
AJ421779, Actinomyces cardiffensis, Actinomycetaceae
AJ427451, Actinomyces vaccimaxillae, Actinomycetaceae
X78720, Actinomyces turicensis, Actinomycetaceae
AJ243891, Actinomyces canis, Actinomycetaceae
AF433168, Actinomyces hongkongensis, Actinomycetaceae
AJ276405, Actinomyces marimammalium, Actinomycetaceae
X82448, Actinomyces hordeovulneris, Actinomycetaceae
AJ508455, Actinomyces nasicola, Actinomycetaceae
AB305159, Trueperella abortisuis, Actinomycetaceae
X79224, Trueperella bernardiae, Actinomycetaceae
X79225, Trueperella pyogenes, type sp., Actinomycetaceae
AJ879696, Trueperella bialowiezense, Actinomycetaceae
AJ879697, Trueperella bonasi, Actinomycetaceae
AF487679, Actinobaculum massiliense, Actinomycetaceae
S83623, Actinobaculum suis, type sp., Actinomycetaceae
Y12329, Actinobaculum schaalii, Actinomycetaceae
AJ439453, Actinobaculum urinale, Actinomycetaceae
FR749960, Arcanobacterium phocae, Actinomycetaceae
AJ250959, Arcanobacterium pluranimalium, Actinomycetaceae
AJ234059, Arcanobacterium haemolyticum, type sp., Actinomycetaceae
AJ300767, Arcanobacterium hippocoleae, Actinomycetaceae

FJ969847, Haloactinobacterium album, type sp., Ruaniaceae

DQ343153, Ruania albidiflava, type sp., Ruaniaceae

Beutenbergiaceae (4)
Y18378, Beutenbergia cavernae, type sp., Beutenbergiaceae
AB522642, Miniimonas arenae, type sp., Beutenbergiaceae
AB455532, Serinibacter salmoneus, type sp., Beutenbergiaceae
AJ400627, Salana multivorans, type sp., Beutenbergiaceae

Bogoriellaceae (7)
FN356976, Georgenia soli, Bogoriellaceae
HQ246163, Georgenia daeguensis, Bogoriellaceae
X94155, Georgenia muralis, type sp., Bogoriellaceae
DQ203185, Georgenia ruanii, Bogoriellaceae
AB436534, Georgenia thermotolerans, Bogoriellaceae
FJ717681, Georgenia halophila, Bogoriellaceae
Y09911, Bogoriella caseilytica, type sp., Bogoriellaceae
 Jonesiaceae (2)
X78420, Jonesia denitrificans, type sp., Jonesiaceae
AJ626896, Jonesia quinghaiensis, Jonesiaceae

Rarobacteraceae (2)
Y17870, Rarobacter faecitabidus, type sp., Rarobacteraceae
AB056129, Rarobacter incanus, Rarobacteraceae

X79451, Sanguibacter inulinus, Sanguibacteraceae

X79452, Sanguibacter suarezii, Sanguibacteraceae
X79450, Sanguibacter keddieii, type sp., Sanguibacteraceae
EF211071, Sanguibacter antarcticus, Sanguibacteraceae
AJ783958, Sanguibacter marinus, Sanguibacteraceae
EF547937, Sanguibacter soli, Sanguibacteraceae
FM995611, Koreibacter algae, type sp., Unclassified Suborder Micrococcineae
AB445007, Paraoerskovia marina, type sp., Cellulomonadaceae
AJ314851, Oerskovia paurometabola, Cellulomonadaceae
X79454, Oerskovia turbata, type sp., Cellulomonadaceae
AJ314848, Oerskovia jenensis, Cellulomonadaceae
X83807, Oerskovia enterophila, Cellulomonadaceae

Promicromonosporaceae (25)
EU910872, Myceligenerans halotolerans, Promicromonosporaceae
AY354285, Myceligenerans xiligouense, type sp., Promicromonosporaceae
FR733716, Myceligenerans crystallogenes, Promicromonosporaceae
AY789835, Isoptericola halotolerans, Promicromonosporaceae
FJ469988, Isoptericola chiayiensis, Promicromonosporaceae
DQ387860, Isoptericola dokdonensis, Promicromonosporaceae
EU852101, Isoptericola jiangsuensis, Promicromonosporaceae
AF105422, Xylanimicrobium pachnodae, type sp., Promicromonosporaceae
AY273185, Xylanibacterium ulmi, type sp., Promicromonosporaceae
AF403541, Xylanimonas cellulosilytica, type sp., Promicromonosporaceae
AJ854061, Isoptericola hypogeus, Promicromonosporaceae
HQ222356, Isoptericola nanjingensis, Promicromonosporaceae
AJ298873, Isoptericola variabilis, type sp., Promicromonosporaceae
FJ214352, Promicromonospora xylanilytica, Promicromonosporaceae
GU434253, Promicromonospora endophytica, Promicromonosporaceae
AJ487303, Promicromonospora aerolata, Promicromonosporaceae
AJ487302, Promicromonospora vindobonensis, Promicromonosporaceae
AM709608, Promicromonospora kroppenstedtii, Promicromonosporaceae
FN293378, Promicromonospora umidemergens , Promicromonosporaceae
AB023375, Promicromonospora sukumoe, Promicromonosporaceae
X83808, Promicromonospora citrea, type sp., Promicromonosporaceae
AM992980, Promicromonospora flava, Promicromonosporaceae
EF076760, Cellulosimicrobium terreum, Promicromonosporaceae
X83809, Cellulosimicrobium cellulans, type sp., Promicromonosporaceae
AY501364, Cellulosimicrobium funkei, Promicromonosporaceae

AB489904, Luteimicrobium subarcticum, Unclassified Suborder Micrococcineae

Cellulomonadaceae (17)
EU560979, Cellulomonas aerilata, Cellulomonadaceae
X83804, Cellulomonas cellasea, Cellulomonadaceae
X83802, Cellulomonas biazotea, Cellulomonadaceae
X83803, Cellulomonas fimi, Cellulomonadaceae
AB268586, Cellulomonas chitinilytica, Cellulomonadaceae
AB166887, Cellulomonas composti, Cellulomonadaceae
X79461, Cellulomonas gelida, Cellulomonadaceae
AF064701, Cellulomonas persica, Cellulomonadaceae
X83801, Cellulomonas uda, Cellulomonadaceae
AF064702, Cellulomonas iranensis, Cellulomonadaceae
X79463, Cellulomonas flavigena, type sp., Cellulomonadaceae
AM902253, Cellulomonas phragmiteti, Cellulomonadaceae
X82449, Cellulomonas humilata, Cellulomonadaceae
AY303668, Cellulomonas xylanilytica, Cellulomonadaceae
AY884570, Cellulomonas terrae, Cellulomonadaceae
AY501362, Cellulomonas denverensis, Cellulomonadaceae
X82598, Cellulomonas hominis, Cellulomonadaceae

Microbacteriaceae (209)
X77441, Microbacterium lacticum, type sp., Microbacteriaceae
Y17237, Microbacterium schleiferi, Microbacteriaceae
AB286029, Microbacterium flavum, Microbacteriaceae
AY962574, Microbacterium koreense, Microbacteriaceae
AB234028, Microbacterium aoyamense, Microbacteriaceae
AB274908, Microbacterium hatanonis, Microbacteriaceae
AM949677, Microbacterium invictum, Microbacteriaceae
AB286030, Microbacterium lacus, Microbacteriaceae
Y17229, Microbacterium aurum, Microbacteriaceae
AB004721, Microbacterium terregens, Microbacteriaceae
AB234025, Microbacterium terricola, Microbacteriaceae
AB248875, Microbacterium pygmaeum, Microbacteriaceae
AB234027, Microbacterium pumilum, Microbacteriaceae
AB234026, Microbacterium deminutum, Microbacteriaceae
AB286028, Microbacterium fluvii, Microbacteriaceae
AB286027, Microbacterium awajiense, Microbacteriaceae
Y17230, Microbacterium dextranolyticum, Microbacteriaceae
Y17234, Microbacterium laevaniformans, Microbacteriaceae
GQ351351, Microbacterium mitrae, Microbacteriaceae
AB004726, Microbacterium aurantiacum, Microbacteriaceae
AB013907, Microbacterium kitamiense, Microbacteriaceae
AB004725, Microbacterium chocolatum, Microbacteriaceae
AB004724, Microbacterium ketosireducens, Microbacteriaceae
AB004720, Microbacterium terrae, Microbacteriaceae
AM181507, Microbacterium thalassium, Microbacteriaceae
EF567306, Microbacterium binotii, Microbacteriaceae
AY376165, Microbacterium halotolerans, Microbacteriaceae
FN547412, Microbacterium yannicii, Microbacteriaceae
FN870023, Microbacterium arthrosphaerae, Microbacteriaceae
AM181504, Microbacterium hominis, Microbacteriaceae
GQ246683, Microbacterium suwonense, Microbacteriaceae
EF593038, Microbacterium soli , Microbacteriaceae
AJ853908, Microbacterium xylanilyticum, Microbacteriaceae
AB004714, Microbacterium halophilum, Microbacteriaceae
EU239498, Microbacterium insulae, Microbacteriaceae
Y17240, Microbacterium trichothecenolyticum, Microbacteriaceae
Y17232, Microbacterium flavescens, Microbacteriaceae
X77443, Microbacterium arborescens, Microbacteriaceae
AB271048, Microbacterium ginsengisoli, Microbacteriaceae
X77442, Microbacterium imperiale, Microbacteriaceae
GQ329713, Microbacterium radiodurans, Microbacteriaceae
AY062021, Microbacterium ulmi, Microbacteriaceae
AB286020, Microbacterium marinilacus, Microbacteriaceae
AJ853909, Microbacterium paludicola, Microbacteriaceae
AB286021, Microbacterium sediminicola, Microbacteriaceae
 EF466125, Microbacterium kribbense, Microbacteriaceae
AF263563, Microbacterium gubbeenense, Microbacteriaceae
AM158907, Microbacterium indicum, Microbacteriaceae
X77446, Microbacterium barkeri, Microbacteriaceae
AM747814, Microbacterium luticocti, Microbacteriaceae
X77445, Microbacterium testaceum, Microbacteriaceae
AM778449, Microbacterium aquimaris, Microbacteriaceae
FJ865214, Microbacterium pseudoresistens, Microbacteriaceae
Y14699, Microbacterium resistens, Microbacteriaceae
AJ698726, Microbacterium hydrocarbonoxydans, Microbacteriaceae
AJ277840, Microbacterium phyllosphaerae, Microbacteriaceae
AJ249780, Microbacterium foliorum, Microbacteriaceae
AJ853910, Microbacterium maritypicum, Microbacteriaceae
Y17227, Microbacterium oxydans, Microbacteriaceae
X77444, Microbacterium liquefaciens, Microbacteriaceae
AB004718, Microbacterium luteolum, Microbacteriaceae
AB004719, Microbacterium saperdae, Microbacteriaceae
AB004717, Microbacterium keratanolyticum, Microbacteriaceae
EF623999, Microbacterium profundi, Microbacteriaceae
AJ698725, Microbacterium oleivorans, Microbacteriaceae
AY566291, Microbacterium natoriense, Microbacteriaceae
AJ309929, Microbacterium aerolatum, Microbacteriaceae
EU873314, Microbacterium ginsengiterrae, Microbacteriaceae
AJ491806, Microbacterium paraoxydans, Microbacteriaceae
EU912487, Microbacterium azadirachtae, Microbacteriaceae
Y17228, Microbacterium arabinogalactanolyticum, Microbacteriaceae
Y17231, Microbacterium esteraromaticum, Microbacteriaceae
EU873539, Microbacterium lindanitolerans, Microbacteriaceae
FJ807673, Microbacterium agarici, Microbacteriaceae
FJ865215, Microbacterium humi, Microbacteriaceae
AB012648, Mycetocola lacteus, Microbacteriaceae
AB012647, Mycetocola saprophilus, type sp., Microbacteriaceae
AB012646, Mycetocola tolaasinivorans, Microbacteriaceae
DQ062097, Mycetocola reblochoni, Microbacteriaceae
AB177868, Plantibacter auratus, Microbacteriaceae
AJ310417, Plantibacter flavus, type sp., Microbacteriaceae
AB042094, Okibacterium fritillariae, type sp., Microbacteriaceae
X77449, Agromyces mediolanus, Microbacteriaceae
GQ241325, Agromyces soli, Microbacteriaceae
AF389342, Agromyces aurantiacus, Microbacteriaceae
FJ529717, Agromyces flavus, Microbacteriaceae
AB454378, Agromyces tropicus, Microbacteriaceae
AB023359, Agromyces bracchium, Microbacteriaceae
AB023356, Agromyces luteolus, Microbacteriaceae
AY427830, Agromyces ulmi, Microbacteriaceae
AY618215, Agromyces italicus, Microbacteriaceae
AY618217, Agromyces lapidis, Microbacteriaceae
DQ673873, Agromyces allii, Microbacteriaceae
AY507129, Agromyces salentinus, Microbacteriaceae
EF363711, Agromyces terreus, Microbacteriaceae
AY618216, Agromyces humatus, Microbacteriaceae
AY507128, Agromyces neolithicus, Microbacteriaceae
FJ972171, Agromyces bauzanensis, Microbacteriaceae
AY737778, Agromyces subbeticus, Microbacteriaceae
X77447, Agromyces ramosus, type sp., Microbacteriaceae
AF503917, Agromyces albus, Microbacteriaceae
AY277619, Agromyces cerinus subsp. nitratus, Microbacteriaceae
D45061, Agromyces hippuratus, Microbacteriaceae
D45060, Agromyces cerinus subsp. cerinus, Microbacteriaceae
FJ607310, Agromyces atrinae, Microbacteriaceae
AB023357, Agromyces rhizospherae, Microbacteriaceae
D45057, Leifsonia aquatica, type sp., Microbacteriaceae
DQ232612, Leifsonia naganoensis, Microbacteriaceae
DQ232614, Leifsonia shinshuensis, Microbacteriaceae
AB016985, Leifsonia xyli subsp. cynodontis, Microbacteriaceae
EU912483, Leifsonia soli, Microbacteriaceae
AB278552, Leifsonia lichenia, Microbacteriaceae
AF116342, Leifsonia poae, Microbacteriaceae
AB046363, Curtobacterium albidum, Microbacteriaceae
X77436, Curtobacterium citreum, type sp., Microbacteriaceae
AB266597, Curtobacterium ammoniigenes, Microbacteriaceae
AJ312209, Curtobacterium flaccumfaciens, Microbacteriaceae
AJ310413, Curtobacterium herbarum, Microbacteriaceae
GU269547, Flavobacterium oceanosedimentum, Flavobacteriaceae
AJ784400, Curtobacterium pusillum, Microbacteriaceae
X77437, Curtobacterium luteum, Microbacteriaceae
EF587758, Curtobacterium ginsengisoli, Microbacteriaceae
AM494541, Humibacter albus, type sp., Microbacteriaceae
AB362159, Schumannella luteola, type sp., Microbacteriaceae
AJ438585, Leifsonia rubra, Microbacteriaceae
AJ459101, Rhodoglobus vestalii, type sp., Microbacteriaceae
AJ438586, Rhodoglobus aureus, Microbacteriaceae
AF539697, Salinibacterium amurskyense, type sp., Microbacteriaceae
DQ515964, Salinibacterium xinjiangense, Microbacteriaceae
EF466124, Leifsonia bigeumensis, Microbacteriaceae
AF159363, Agreia bicolorata, type sp., Microbacteriaceae
AJ310412, Agreia pratensis, Microbacteriaceae
AF224722, Subtercola boreus, type sp., Microbacteriaceae
AF224723, Subtercola frigoramans, Microbacteriaceae
AJ717385, Microcella alkaliphila, Microbacteriaceae
AJ717388, Microcella putealis, type sp., Microbacteriaceae
DQ256087, Yonghaparkia alkaliphila, type sp., Microbacteriaceae
EF373534, Chryseoglobus frigidaquae, type sp., Microbacteriaceae
EF466129, Leifsonia kribbensis, Microbacteriaceae
DQ473536, Herbiconiux ginsengi, type sp., Microbacteriaceae
FN432340, Herbiconiux solani, Microbacteriaceae
AB583921, Herbiconiux flava, Microbacteriaceae
FJ828659, Herbiconiux moechotypicola, Microbacteriaceae
AM072820, Leucobacter alluvii, Microbacteriaceae
GU390657, Leucobacter chromiiresistens, Microbacteriaceae
EU346911, Leucobacter chironomi, Microbacteriaceae
GQ504012, Leucobacter celer, Microbacteriaceae
AB012594, Leucobacter albus, Microbacteriaceae
D45063, Leucobacter komagatae, type sp., Microbacteriaceae
AJ781047, Leucobacter aridicollis, Microbacteriaceae
AM040493, Leucobacter iarius, Microbacteriaceae
GQ246672, Leucobacter denitrificans, Microbacteriaceae
DQ845457, Leucobacter chromiireducens subsp. solipictus, Microbacteriaceae
AJ781046, Leucobacter chromiireducens subsp. chromiireducens, Microbacteriaceae
AM072819, Leucobacter luti, Microbacteriaceae
FN597581, Leucobacter aerolatus, Microbacteriaceae
GQ352403, Leucobacter salsicius, Microbacteriaceae
AB514037, Leucobacter exalbidus, Microbacteriaceae
 AM940158, Leucobacter tardus, Microbacteriaceae
AM900767, Leifsonia pindariensis, Microbacteriaceae
AB282862, Microterricola viridarii, type sp., Microbacteriaceae
AM286414, Phycicola gilvus, type sp., Microbacteriaceae
AB279547, Agrococcus citreus, Microbacteriaceae
X92492, Agrococcus jenensis, type sp., Microbacteriaceae
DQ156908, Agrococcus lahaulensis, Microbacteriaceae
AB279548, Agrococcus baldri, Microbacteriaceae
GQ504748, Agrococcus carbonis, Microbacteriaceae
AM396260, Agrococcus jejuensis, Microbacteriaceae
AM940157, Agrococcus versicolor, Microbacteriaceae
FJ423764, Agrococcus terreus, Microbacteriaceae
DQ168427, Agrococcus casei, Microbacteriaceae
AB378301, Glaciibacter superstes, type sp., Microbacteriaceae
AM931710, Leifsonia antarctica, Microbacteriaceae
AM889135, Leifsonia kafniensis, Microbacteriaceae
GQ406810, Leifsonia psychrotolerans, Microbacteriaceae
GQ496083, Marisediminicola antarctica, type sp., Microbacteriaceae
FN666417, Frondihabitans cladoniiphilus, Microbacteriaceae
DQ525859, Frondihabitans australicus, type sp., Microbacteriaceae
FM998017, Frondihabitans peucedani, Microbacteriaceae
Y18807, Frigoribacterium faeni, type sp., Microbacteriaceae
EF466126, Frigoribacterium mesophilum, Microbacteriaceae
AM849034, Clavibacter michiganensis subsp. sepedonicus, Microbacteriaceae
U09761, Clavibacter michiganensis subsp. insidiosus, Microbacteriaceae
U30254, Clavibacter michiganensis subsp. tessellarius, Microbacteriaceae
X77435, Clavibacter michiganensis subsp. michiganensis, type sp., Microbacteriaceae
X77434, Clavibacter michiganensis subsp. nebraskensis, Microbacteriaceae
AM410684, Rathayibacter iranicus, Microbacteriaceae
D84127, Rathayibacter toxicus, Microbacteriaceae
AF159364, Rathayibacter caricis, Microbacteriaceae
X77439, Rathayibacter rathayi, type sp., Microbacteriaceae
AM410683, Rathayibacter festucae, Microbacteriaceae
X77438, Rathayibacter tritici, Microbacteriaceae
EF467640, Cryobacterium roopkundense, Microbacteriaceae
AJ544063, Cryobacterium psychrophilum, type sp., Microbacteriaceae
HQ845193, Cryobacterium luteum, Microbacteriaceae
HQ845195, Cryobacterium flavum, Microbacteriaceae
DQ515963, Cryobacterium psychrotolerans, Microbacteriaceae
GQ406814, Cryobacterium arcticum, Microbacteriaceae
FJ527819, Amnibacterium kyonggiense, type sp., Microbacteriaceae
DQ533552, Labedella gwakjiensis, type sp., Microbacteriaceae
EF466127, Cryobacterium mesophilum, Microbacteriaceae
AY372075, Klugiella xanthotipulae, type sp., Microbacteriaceae
AJ306835, Gulosibacter molinativorax, type sp., Microbacteriaceae
HQ268603, Gulosibacter chungangensis, Microbacteriaceae
AF300651, Zimmermannella faecalis, Microbacteriaceae
AB012595, Zimmermannella bifida, Microbacteriaceae
X77440, Pseudoclavibacter helvolus, type sp., Microbacteriaceae
FJ514934, Pseudoclavibacter chungangensis, Microbacteriaceae
AB012590, Zimmermannella alba, Microbacteriaceae

AF251035, Tropheryma whipplei, type sp., Cellulomonadaceae

HQ266601, Pseudoclavibacter caeni, Microbacteriaceae
AB329630, Pseudoclavibacter soli, Microbacteriaceae
X79458, Actinotalea fermentans, type sp., Cellulomonadaceae
HQ702749, Cellulomonas carbonis, Cellulomonadaceae
X92152, Cellulomonas bogoriensis, Cellulomonadaceae
AJ277650, Ornithinimicrobium humiphilum, type sp., Intrasporangiaceae
DQ512860, Ornithinimicrobium pekingense, Intrasporangiaceae
AY636111, Ornithinimicrobium kibberense, Intrasporangiaceae
HM068886, Serinicoccus chungangensis, Intrasporangiaceae
EU603762, Serinicoccus profundi, Intrasporangiaceae
AY382898, Serinicoccus marinus, type sp., Intrasporangiaceae
AB520822, Branchiibius hedensis, type sp., Dermacoccaceae
Y14152, Demetria terragena, type sp., Dermacoccaceae

Dermacoccaceae (6)
AY894328, Dermacoccus barathri, Dermacoccaceae
AY894329, Dermacoccus profundi, Dermacoccaceae
AY894323, Dermacoccus abyssi, Dermacoccaceae
X87757, Dermacoccus nishinomiyaensis, type sp., Dermacoccaceae
AB468971, Luteipulveratus mongoliensis , type sp., Dermacoccaceae
AB539735, Flexivirga alba, type sp., Dermacoccaceae

EF187228, Calidifontibacter indicus, type.sp, Dermacoccaceae

FJ528304, Yimella lutea , type sp., Dermacoccaceae

Dermatophilaceae (7)
AJ558133, Arsenicicoccus bolidensis, type sp., Intrasporangiaceae
AB521998, Arsenicicoccus piscis, Intrasporangiaceae
AJ243919, Austwickia chelonae, type sp., Dermatophilaceae
AF109792, Kineosphaera limosa, type sp., Dermatophilaceae
AB550799, Piscicoccus intestinalis, type sp., Dermatophilaceae
AB550798, Mobilicoccus pelagius, type sp., Dermatophilaceae
AJ243918, Dermatophilus congolensis, type sp., Dermatophilaceae

FJ487951, Intrasporangium chromatireducens, Intrasporangiaceae

Y08539, Janibacter limosus, type sp., Intrasporangiaceae
AF176948, Janibacter terrae, Intrasporangiaceae
FR749912, Janibacter hoylei, Intrasporangiaceae
AY837752, Janibacter anophelis, Intrasporangiaceae
AB286023, Janibacter corallicola, Intrasporangiaceae
AJ297722, Kytococcus schroeteri, Dermacoccaceae
FM992368, Kytococcus aerolatus, Dermacoccaceae
X87755, Kytococcus sedentarius, type sp., Dermacoccaceae
AB286025, Marihabitans asiaticum, type sp., Intrasporangiaceae
AY522568, Janibacter melonis, Intrasporangiaceae
DQ372707, Kribbia dieselivorans, type sp., Intrasporangiaceae
AJ566282, Intrasporangium calvum, type sp., Intrasporangiaceae
HQ204221, Intrasporangium mesophilum, Intrasporangiaceae
AB282887, Intrasporangium oryzae, type sp., Intrasporangiaceae
Y11928, Terracoccus luteus, type sp., Intrasporangiaceae
EU573947, Terrabacter aeriphilus, Intrasporangiaceae
AB282888, Humibacillus xanthopallidus, type sp., Intrasporangiaceae
AF005023, Terrabacter tumescens, type sp., Intrasporangiaceae
EU332827, Terrabacter ginsenosidimutans, Intrasporangiaceae
FJ717334, Terrabacter carboxydivorans, Intrasporangiaceae
AM690744, Terrabacter lapilli, Intrasporangiaceae
EF212039, Terrabacter aerolatus, Intrasporangiaceae
FJ423552, Terrabacter terrigena, Intrasporangiaceae
AY944176, Terrabacter terrae, Intrasporangiaceae
EF493847, Phycicoccus aerophilus, Intrasporangiaceae
EU332824, Phycicoccus ginsenosidimutans, Intrasporangiaceae
EF555583, Phycicoccus dokdonensis, Intrasporangiaceae
EF466128, Phycicoccus bigeumensis, Intrasporangiaceae
 DQ345443, Phycicoccus jejuensis, type sp., Intrasporangiaceae
FJ529696, Phycicoccus cremeus, Intrasporangiaceae
FJ796074, Ornithinibacter aureus, type sp., Intrasporangiaceae
EU878005, Fodinibacter luteus, type sp., Intrasporangiaceae
EF553529, Knoellia aerolata, Intrasporangiaceae
HQ401007, Knoellia flava, Intrasporangiaceae
AJ294412, Knoellia sinensis, type sp., Intrasporangiaceae
AJ294413, Knoellia subterranea, Intrasporangiaceae
HQ171909, Knoellia locipacati, Intrasporangiaceae
AF125091, Tetrasphaera australiensis, Intrasporangiaceae
DQ007321, Tetrasphaera jenkinsii, Intrasporangiaceae
Y14595, Tetrasphaera veronensis, Intrasporangiaceae
DQ007320, Tetrasphaera vanveenii, Intrasporangiaceae
AB030911, Tetrasphaera elongata, Intrasporangiaceae
AB072496, Tetrasphaera duodecadis, Intrasporangiaceae
AF125092, Tetrasphaera japonica, type sp., Intrasporangiaceae
AB537173, Tetrasphaera remsis, Intrasporangiaceae
AM398397, Lapillicoccus jejuensis, type sp., Intrasporangiaceae
AB193172, Oryzihumus leptocrescens, type sp., Intrasporangiaceae
Y17869, Ornithinicoccus hortensis, type sp., Intrasporangiaceae
AB512285, Angustibacter luteus, type sp., Kineosporiaceae

Kineosporiaceae (11)
AB377116, Kineosporia babensis, Kineosporiaceae
AB377117, Kineosporia mikuniensis, Kineosporiaceae
AF095336, Kineosporia aurantiaca, type sp., Kineosporiaceae
AB003932, Kineosporia succinea, Kineosporiaceae
FJ214362, Kineosporia mesophila, Kineosporiaceae
FR749986, Kineosporia rhizophila, Kineosporiaceae
AB003935, Kineosporia rhamnosa, Kineosporiaceae
DQ200982, Pseudokineococcus marinus, Kineosporiaceae
FN824365, Pseudokineococcus lusitanus, type.sp, Kineosporiaceae
FM179321, Aquipuribacter hungaricus, type sp., Intrasporangiaceae
AY831385, Quadrisphaera granulorum, type sp., Kineosporiaceae

X77958, Kineococcus aurantiacus, type sp., Kineosporiaceae

FM210338, Kineococcus rhizosphaerae, Kineosporiaceae
AF247813, Kineococcus radiotolerans, Kineosporiaceae
EF667339, Kineococcus gynurae, Kineosporiaceae
EU543662, Kineococcus xinjiangensis, Kineosporiaceae

Nakamurellaceae (3)
DQ321750, Humicoccus flavidus, type sp., Nakamurellaceae
AM778124, Saxeibacter lacteus, type sp., Nakamurellaceae
Y08541, Nakamurella multipartita, type sp., Nakamurellaceae

D85465, Cryptosporangium arvum, type sp., Cryptosporangiaceae

D85466, Cryptosporangium japonicum, Cryptosporangiaceae
AJ293746, Cryptosporangium aurantiacum, Cryptosporangiaceae
AB037007, Cryptosporangium minutisporangium, Cryptosporangiaceae
EF490376, Fodinicola feengrottensis, type sp., Cryptosporangiaceae

Sporichthyaceae (2)
AB006164, Sporichthya brevicatena, Sporichthyaceae
AB025317, Sporichthya polymorpha, type sp., Sporichthyaceae

Geodermatophilaceae (8)
EU181225, Modestobacter marinus, Geodermatophilaceae
AJ871304, Modestobacter versicolor, Geodermatophilaceae
Y18646, Modestobacter multiseptatus, type sp., Geodermatophilaceae
DQ200983, Blastococcus jejuensis, Geodermatophilaceae
X92356, Geodermatophilus obscurus, type sp., Geodermatophilaceae
EU438905, Geodermatophilus ruber, Geodermatophilaceae
L40614, Blastococcus aggregatus, type sp., Geodermatophilaceae
FN600641, Blastococcus saxobsidens, Geodermatophilaceae

Streptomycetaceae (563)
AB184869, Streptomyces bambergiensis, Streptomycetaceae
DQ026658, Streptomyces prasinus, Streptomycetaceae
AB184882, Streptomyces cyanoalbus, Streptomycetaceae
DQ462649, Streptomyces emeiensis, Streptomycetaceae
AB249968, Streptomyces prasinopilosus, Streptomycetaceae
FR692091, Streptomyces herbaceus, Streptomycetaceae
FR692095, Streptomyces incanus, Streptomycetaceae
FR692098, Streptomyces pratens, Streptomycetaceae
DQ445792, Streptomyces poonensis, Streptomycetaceae
DQ442499, Streptomyces fumigatiscleroticus, Streptomycetaceae
AB184251, Streptomyces roseiscleroticus, Streptomycetaceae
AB184604, Streptomyces ruber, Streptomycetaceae
EF178683, Streptomyces spiralis, Streptomycetaceae
AB231805, Streptomyces nogalater, Streptomycetaceae
AB184390, Streptomyces prasinosporus, Streptomycetaceae
DQ442529, Streptomyces naganishii, Streptomycetaceae
AY999807, Streptomyces griseoviridis, Streptomycetaceae
GU225938, Streptomyces zinciresistens, Streptomycetaceae
AB249981, Streptomyces brasiliensis, Streptomycetaceae
AB184188, Streptomyces aurantiogriseus, Streptomycetaceae
AB018095, Streptomyces thermodiastaticus, Streptomycetaceae
AB184237, Streptomyces rochei, Streptomycetaceae
AY999929, Streptomyces vinaceusdrappus, Streptomycetaceae
AY999922, Streptomyces plicatus, Streptomycetaceae
EF178679, Streptomyces mutabilis, Streptomycetaceae
DQ442501, Streptomyces geysiriensis, Streptomycetaceae
EF178696, Streptomyces minutiscleroticus, Streptomycetaceae
AY999851, Streptomyces ghanaensis, Streptomycetaceae
AB184402, Streptomyces anandii, Streptomycetaceae
AB184137, Streptomyces griseomycini, Streptomycetaceae
AB184140, Streptomyces griseostramineus, Streptomycetaceae
AJ781333, Streptomyces graminearus, Streptomycetaceae
AB184665, Streptomyces glaucus, Streptomycetaceae
AF333113, Streptomyces thermospinosisporus, Streptomycetaceae
DQ442556, Streptomyces viridosporus, Streptomycetaceae
AB184706, Streptomyces asterosporus, Streptomycetaceae
AB184710, Streptomyces aureorectus, Streptomycetaceae
DQ442554, Streptomyces virens, Streptomycetaceae
AB184329, Streptomyces calvus, Streptomycetaceae
EF178674, Streptomyces azureus, Streptomycetaceae
AB184657, Streptomyces djakartensis, Streptomycetaceae
DQ442541, Streptomyces pseudogriseolus, Streptomycetaceae
X80824, Streptomyces caelestis, Streptomycetaceae
DQ442516, Streptomyces lavendulocolor, Streptomycetaceae
AY999854, Streptomyces viridiviolaceus, Streptomycetaceae
AB184273, Streptomyces fumanus, Streptomycetaceae
AB184574, Streptomyces carpinensis, Streptomycetaceae
AY999844, Streptomyces fimbriatus, Streptomycetaceae
 AB184660, Streptomyces gancidicus, Streptomycetaceae
AY999810, Streptomyces rubiginosus, Streptomycetaceae
DQ442495, Streptomyces cellulosae, Streptomycetaceae
AB184577, Streptomyces capillispiralis, Streptomycetaceae
AB184670, Streptomyces levis, Streptomycetaceae
AB184847, Streptomyces afghaniensis, Streptomycetaceae
AY208912, Streptomyces africanus, Streptomycetaceae
AB184690, Streptomyces tuirus, Streptomycetaceae
AB184255, Streptomyces albidoflavus, Streptomycetaceae
DQ442497, Streptomyces daghestanicus, Streptomycetaceae
AB184868, Streptomyces hydrogenans, Streptomycetaceae
AJ399491, Streptomyces griseochromogenes, Streptomycetaceae
AY999737, Streptomyces violascens, Streptomycetaceae
AJ399472, Streptomyces resistomycificus, Streptomycetaceae
AY079156, Streptomyces koyangensis, Streptomycetaceae
FN429653, Streptomyces tacrolimicus, Streptomycetaceae
AJ399485, Streptomyces arenae, Streptomycetaceae
AB184316, Streptomyces violarus, Streptomycetaceae
AB184143, Streptomyces hawaiiensis, Streptomycetaceae
AB184152, Streptomyces massasporeus, Streptomycetaceae
AB184379, Streptomyces luteogriseus, Streptomycetaceae
AB184851, Streptomyces janthinus, Streptomycetaceae
AB184315, Streptomyces violaceus, Streptomycetaceae
AJ781327, Streptomyces albosporeus subsp. albosporeus, Streptomycetaceae
AJ399484, Streptomyces roseoviolaceus, Streptomycetaceae
AB184842, Streptomyces flavoviridis, Streptomycetaceae
AB184161, Streptomyces pilosus, Streptomycetaceae
DQ026672, Streptomyces atrovirens, Streptomycetaceae
AF361786, Streptomyces niveiscabiei, Streptomycetaceae
HM748598, Streptomyces gramineus, Streptomycetaceae
AB184507, Streptomyces cinerochromogenes, Streptomycetaceae
AB184648, Streptomyces cinereospinus, Streptomycetaceae
DQ026668, Streptomyces coeruleofuscus, Streptomycetaceae
AB249966, Streptomyces mexicanus, Streptomycetaceae
AJ007402, Streptomyces thermocoprophilus, Streptomycetaceae
Z68094, Streptomyces thermovulgaris, Streptomycetaceae
AB249980, Streptomyces thermogriseus, Streptomycetaceae
AB249909, Streptomyces thermoalcalitolerans, Streptomycetaceae
Z68095, Streptomyces thermoviolaceus subsp. apingens, Streptomycetaceae
AB184194, Streptomyces chromofuscus, Streptomycetaceae
AB184421, Streptomyces bluensis, Streptomycetaceae
U94489, Streptomyces thermocarboxydovorans, Streptomycetaceae
Z68096, Streptomyces thermoviolaceus subsp. thermoviolaceus, Streptomycetaceae
FM998652, Streptomyces hyderabadensis, Streptomycetaceae
AB184673, Streptomyces lomondensis, Streptomycetaceae
AB184651, Streptomyces coeruleoprunus, Streptomycetaceae
AJ007403, Streptomyces somaliensis, Streptomycetaceae
DQ026630, Streptomyces fradiae, Streptomycetaceae
AB249917, Streptomyces glomeratus, Streptomycetaceae
AY750056, Streptomyces bangladeshensis, Streptomycetaceae
AY999821, Streptomyces rameus, Streptomycetaceae
AB184419, Streptomyces griseosporeus, Streptomycetaceae
AB184553, Streptomyces indiaensis, Streptomycetaceae
AJ399486, Streptomyces purpurascens, Streptomycetaceae
AB184877, Streptomyces iakyrus, Streptomycetaceae
AY999720, Streptomyces coerulescens, Streptomycetaceae
AB184849, Streptomyces bellus, Streptomycetaceae
AB184424, Streptomyces lusitanus, Streptomycetaceae
U94490, Streptomyces thermocarboxydus, Streptomycetaceae
AF452714, Streptomyces speibonae, Streptomycetaceae
AB184440, Streptomyces longispororuber, Streptomycetaceae
AY999852, Streptomyces viridodiastaticus, Streptomycetaceae
AY999719, Streptomyces coeruleorubidus, Streptomycetaceae
AB249954, Streptomyces malachitospinus, Streptomycetaceae
AB184326, Streptomyces parvulus, Streptomycetaceae
AB184578, Streptomyces spinoverrucosus, Streptomycetaceae
AB184743, Streptomyces olivaceus, Streptomycetaceae
AB184398, Streptomyces pactum, Streptomycetaceae
AB184631, Streptomyces anthocyanicus, Streptomycetaceae
AB184687, Streptomyces tricolor, Streptomycetaceae
AF503496, Streptomyces coelescens, Streptomycetaceae
AF503491, Streptomyces humiferus, Streptomycetaceae
AF503497, Streptomyces violaceolatus, Streptomycetaceae
AF503492, Streptomyces violaceoruber, Streptomycetaceae
AB184650, Streptomyces coelicoflavus, Streptomycetaceae
AY999917, Streptomyces fragilis, Streptomycetaceae
AB184681, Streptomyces rubrogriseus, Streptomycetaceae
AJ781374, Streptomyces violaceorubidus, Streptomycetaceae
D63873, Streptomyces tendae, Streptomycetaceae
DQ026631, Streptomyces diastaticus subsp. ardesiacus, Streptomycetaceae
DQ345779, Streptomyces tritolerans, Streptomycetaceae
AY295791, Streptomyces chattanoogensis, Streptomycetaceae
AJ781353, Streptomyces lienomycini, Streptomycetaceae
AY177662, Streptomyces albogriseolus, Streptomycetaceae
AJ965470, Streptomyces marokkonensis, Streptomycetaceae
FM202482, Streptomyces thinghirensis, Streptomycetaceae
AY999846, Streptomyces achromogenes subsp. rubradiris, Streptomycetaceae
AY999808, Streptomyces althioticus, Streptomycetaceae
AB184221, Streptomyces matensis, Streptomycetaceae
AB184139, Streptomyces griseorubens, Streptomycetaceae
AB184704, Streptomyces labedae, Streptomycetaceae
DQ442551, Streptomyces variabilis, Streptomycetaceae
AJ781328, Streptomyces erythrogriseus, Streptomycetaceae
AJ781321, Streptomyces griseoincarnatus, Streptomycetaceae
AB184712, Streptomyces heliomycini, Streptomycetaceae
AY999757, Streptomyces albaduncus, Streptomycetaceae
AB184275, Streptomyces griseoloalbus, Streptomycetaceae
AB184282, Streptomyces malachitofuscus, Streptomycetaceae
AJ781322, Streptomyces griseoflavus, Streptomycetaceae
AB184742, Streptomyces gougerotii, Streptomycetaceae
AB184170, Streptomyces rutgersensis, Streptomycetaceae
AB184785, Streptomyces diastaticus subsp. diastaticus, Streptomycetaceae
AB184277, Streptomyces intermedius, Streptomycetaceae
AY999774, Streptomyces aureoverticillatus, Streptomycetaceae
EU812170, Streptomyces silaceus, Streptomycetaceae
AB184359, Streptomyces flavofungini, Streptomycetaceae
AB184787, Streptomyces fulvissimus, Streptomycetaceae
AB184393, Streptomyces spectabilis, Streptomycetaceae
EF178699, Streptomyces alboflavus, Streptomycetaceae
AJ781371, Streptomyces variegatus, Streptomycetaceae
AF184081, Streptomyces scopiformis, Streptomycetaceae
AB184676, Streptomyces griseoaurantiacus, Streptomycetaceae
AY314783, Streptomyces jietaisiensis, Streptomycetaceae
AB184123, Streptomyces collinus, Streptomycetaceae
 AB184628, Streptomyces paradoxus, Streptomycetaceae
AY999867, Streptomyces violaceochromogenes, Streptomycetaceae
AB184182, Streptomyces ambofaciens, Streptomycetaceae
D63870, Streptomyces eurythermus, Streptomycetaceae
AF114033, Streptomyces nodosus, Streptomycetaceae
DQ442555, Streptomyces viridochromogenes, Streptomycetaceae
AB184843, Streptomyces glaucescens, Streptomycetaceae
AY699792, Streptomyces pharetrae, Streptomycetaceae
AB184764, Streptomyces flaveolus, Streptomycetaceae
EF178678, Streptomyces misionensis, Streptomycetaceae
AJ391814, Streptomyces phaeoluteichromatogenes, Streptomycetaceae
AB184206, Streptomyces griseofuscus, Streptomycetaceae
AB184155, Streptomyces murinus, Streptomycetaceae
AB249939, Streptomyces costaricanus, Streptomycetaceae
AJ391813, Streptomyces phaeogriseichromatogenes, Streptomycetaceae
AJ399465, Streptomyces echinatus, Streptomycetaceae
AB184845, Streptomyces lanatus, Streptomycetaceae
AY999785, Streptomyces durhamensis, Streptomycetaceae
AB184198, Streptomyces filipinensis, Streptomycetaceae
AF361785, Streptomyces puniciscabiei, Streptomycetaceae
DQ026652, Streptomyces yokosukanensis, Streptomycetaceae
AY999742, Streptomyces cellostaticus, Streptomycetaceae
X79852, Streptomyces galbus, Streptomycetaceae
AB184580, Streptomyces longwoodensis, Streptomycetaceae
AB184696, Streptomyces bungoensis, Streptomycetaceae
AB045877, Streptomyces capoamus, Streptomycetaceae
DQ026649, Streptomyces regensis, Streptomycetaceae
AB184267, Streptomyces corchorusii, Streptomycetaceae
AB184288, Streptomyces olivaceoviridis, Streptomycetaceae
AB184396, Streptomyces canarius, Streptomycetaceae
DQ442522, Streptomyces lucensis, Streptomycetaceae
DQ445796, Streptomyces niveoruber, Streptomycetaceae
AB184109, Streptomyces achromogenes subsp. achromogenes, Streptomycetaceae
AJ781339, Streptomyces griseorubiginosus, Streptomycetaceae
DQ026666, Streptomyces phaeopurpureus, Streptomycetaceae
DQ026659, Streptomyces prunicolor, Streptomycetaceae
BA000030, Streptomyces avermitilis , Streptomycetaceae
EU812169, Streptomyces atriruber, Streptomycetaceae
AB184412, Streptomyces mirabilis, Streptomycetaceae
AY094370, Streptomyces olivochromogenes, Streptomycetaceae
AB184072, Streptomyces cinereus, Streptomycetaceae
DQ026643, Streptomyces flaveus, Streptomycetaceae
DQ442552, Streptomyces vastus, Streptomycetaceae
EF157833, Streptomyces indicus, Streptomycetaceae
AY999861, Streptomyces aureocirculatus, Streptomycetaceae
AB184357, Streptomyces novaecaesareae, Streptomycetaceae
AB184328, Streptomyces bobili, Streptomycetaceae
AB045878, Streptomyces galilaeus, Streptomycetaceae
AJ391815, Streptomyces phaeoluteigriseus, Streptomycetaceae
EF178691, Streptomyces flavovariabilis, Streptomycetaceae
AB184839, Streptomyces chartreusis, Streptomycetaceae
FJ613126, Streptomyces osmaniensis, Streptomycetaceae
EU526954, Streptomyces plumbiresistens, Streptomycetaceae
AY845349, Streptomyces alboniger, Streptomycetaceae
AY999751, Streptomyces griseoluteus, Streptomycetaceae
AB184165, Streptomyces recifensis, Streptomycetaceae
AB249970, Streptomyces seoulensis, Streptomycetaceae
AB184233, Streptomyces pseudovenezuelae, Streptomycetaceae
AY999775, Streptomyces canus, Streptomycetaceae
AB184208, Streptomyces ciscaucasicus, Streptomycetaceae
GQ329712, Streptomyces caeruleatus, Streptomycetaceae
AB184279, Streptomyces lincolnensis, Streptomycetaceae
FJ465151, Streptomyces shaanxiensis, Streptomycetaceae
DQ067287, Streptomyces durmitorensis, Streptomycetaceae
DQ026660, Streptomyces rectiviolaceus, Streptomycetaceae
AY094368, Streptomyces aureus, Streptomycetaceae
DQ442511, Streptomyces kanamyceticus, Streptomycetaceae
AY999824, Streptomyces ederensis, Streptomycetaceae
AB184305, Streptomyces umbrinus, Streptomycetaceae
AB184738, Streptomyces phaeochromogenes, Streptomycetaceae
AB045879, Streptomyces tauricus, Streptomycetaceae
AJ781383, Streptomyces aurantiacus, Streptomycetaceae
AB249983, Streptomyces glomeroaurantiacus, Streptomycetaceae
AB184262, Streptomyces bottropensis, Streptomycetaceae
AJ007429, Streptomyces stelliscabiei, Streptomycetaceae
DQ026644, Streptomyces cacaoi subsp. asoensis, Streptomycetaceae
DQ442508, Streptomyces humidus, Streptomycetaceae
EF178682, Streptomyces rishiriensis, Streptomycetaceae
AJ007428, Streptomyces reticuliscabiei, Streptomycetaceae
AB026221, Streptomyces turgidiscabies, Streptomycetaceae
AB184560, Streptomyces hygroscopicus subsp. ossamyceticus, Streptomycetaceae
AJ781367, Streptomyces torulosus, Streptomycetaceae
AB184857, Streptomyces ipomoeae, Streptomycetaceae
EU170127, Streptomyces decoyicus, Streptomycetaceae
D63869, Streptomyces neyagawaensis, Streptomycetaceae
D63867, Streptomyces diastatochromogenes, Streptomycetaceae
AY207598, Streptomyces europaeiscabiei, Streptomycetaceae
D63862, Streptomyces scabiei, Streptomycetaceae
EF219459, Streptomyces deccanensis, Streptomycetaceae
AY999758, Streptomyces cinereoruber subsp. fructofermentans, Streptomycetaceae
AB184360, Streptomyces phaeofaciens, Streptomycetaceae
DQ442542, Streptomyces puniceus, Streptomycetaceae
AF346475, Streptomyces cyaneus, Streptomycetaceae
D63865, Streptomyces acidiscabies, Streptomycetaceae
AB498741, Streptomyces spongiae, Streptomycetaceae
AB184209, Streptomyces griseoruber, Streptomycetaceae
AY999776, Streptomyces antibioticus, Streptomycetaceae
AB184442, Streptomyces alanosinicus, Streptomycetaceae
AB184266, Streptomyces cinnabarinus, Streptomycetaceae
DQ442513, Streptomyces kunmingensis, Streptomycetaceae
AB184841, Streptomyces curacoi, Streptomycetaceae
AB184270, Streptomyces flavidovirens, Streptomycetaceae
AJ399475, Streptomyces longisporus, Streptomycetaceae
AB500703, Streptomyces coacervatus, Streptomycetaceae
AJ781342, Streptomyces laurentii, Streptomycetaceae
AB184302, Streptomyces termitum, Streptomycetaceae
AB184327, Streptomyces roseofulvus, Streptomycetaceae
AB184168, Streptomyces roseolus, Streptomycetaceae
AB184130, Streptomyces filamentosus, Streptomycetaceae
AB184389, Streptomyces showdoensis, Streptomycetaceae
AJ781372, Streptomyces viridobrunneus, Streptomycetaceae
AB184239, Streptomyces roseoviridis, Streptomycetaceae
DQ317411, Streptomyces gulbargensis, Streptomycetaceae
 AB249953, Streptomyces albidochromogenes, Streptomycetaceae
AB249930, Streptomyces enissocaesilis, Streptomycetaceae
AY999787, Streptomyces chryseus, Streptomycetaceae
AB184367, Streptomyces helvaticus, Streptomycetaceae
EU196762, Streptomyces hypolithicus, Streptomycetaceae
AB184638, Streptomyces albosporeus subsp. labilomyceticus, Streptomycetaceae
AB184286, Streptomyces nashvillensis, Streptomycetaceae
AY999771, Streptomyces cinereoruber subsp. cinereoruber, Streptomycetaceae
DQ442506, Streptomyces hirsutus, Streptomycetaceae
AB184314, Streptomyces violaceorectus, Streptomycetaceae
X79851, Streptomyces bikiniensis, Streptomycetaceae
DQ311081, Streptomyces vietnamensis, Streptomycetaceae
AB184149, Streptomyces litmocidini, Streptomycetaceae
EF178684, Streptomyces yerevanensis, Streptomycetaceae
EF178697, Streptomyces omiyaensis, Streptomycetaceae
DQ442557, Streptomyces wedmorensis, Streptomycetaceae
EF178685, Streptomyces zaomyceticus, Streptomycetaceae
AB184324, Streptomyces exfoliatus, Streptomycetaceae
DQ445794, Streptomyces narbonensis, Streptomycetaceae
AJ781326, Streptomyces lateritius, Streptomycetaceae
AB045890, Streptomyces venezuelae, Streptomycetaceae
AJ781355, Streptomyces nojiriensis, Streptomycetaceae
AB184394, Streptomyces vinaceus, Streptomycetaceae
AJ781370, Streptomyces spororaveus, Streptomycetaceae
DQ442560, Streptomyces xanthophaeus, Streptomycetaceae
AY999794, Streptomyces cirratus, Streptomycetaceae
AB184395, Streptomyces avidinii, Streptomycetaceae
X80825, Streptomyces subrutilus, Streptomycetaceae
AY999841, Streptomyces lavendulae subsp. grasserius, Streptomycetaceae
DQ442544, Streptomyces sporoverrucosus, Streptomycetaceae
EF178693, Streptomyces goshikiensis, Streptomycetaceae
DQ026646, Streptomyces colombiensis, Streptomycetaceae
D85116, Streptomyces lavendulae subsp. lavendulae, Streptomycetaceae
AB184707, Streptomyces cinnamonensis, Streptomycetaceae
AB184175, Streptomyces virginiae, Streptomycetaceae
AJ781330, Streptomyces globosus, Streptomycetaceae
DQ442548, Streptomyces toxytricini, Streptomycetaceae
AY999915, Streptomyces flavotricini, Streptomycetaceae
AB184292, Streptomyces polychromogenes, Streptomycetaceae
DQ026656, Streptomyces racemochromogenes, Streptomycetaceae
AB184409, Streptomyces katrae, Streptomycetaceae
AY999718, Streptomyces clavuligerus, Streptomycetaceae
AB184325, Streptomyces kurssanovii, Streptomycetaceae
AB184349, Streptomyces xantholiticus, Streptomycetaceae
AB045887, Streptomyces peucetius, Streptomycetaceae
FJ261968, Streptomyces sanyensis, Streptomycetaceae
AY999744, Streptomyces cremeus, Streptomycetaceae
AB184814, Streptomyces spiroverticillatus, Streptomycetaceae
AB249945, Streptomyces sanglieri, Streptomycetaceae
AB006159, Streptomyces yanii, Streptomycetaceae
DQ026638, Streptomyces atratus, Streptomycetaceae
DQ026636, Streptomyces gelaticus, Streptomycetaceae
AB184806, Streptomyces pulveraceus, Streptomycetaceae
FR692106, Streptomyces laculatispora, Streptomycetaceae
FR692104, Streptomyces brevispora, Streptomycetaceae
AF385681, Streptomyces beijiangensis, Streptomycetaceae
AB249957, Streptomyces drozdowiczii, Streptomycetaceae
AB249958, Streptomyces albovinaceus, Streptomycetaceae
EF178686, Streptomyces globisporus, Streptomycetaceae
AB184240, Streptomyces rubiginosohelvolus, Streptomycetaceae
AY999856, Streptomyces tanashiensis, Streptomycetaceae
DQ442540, Streptomyces pluricolorescens, Streptomycetaceae
AJ494864, Streptomyces flavogriseus, Streptomycetaceae
DQ026635, Streptomyces flavovirens, Streptomycetaceae
EF178680, Streptomyces nitrosporeus, Streptomycetaceae
AB184768, Streptomyces griseolus, Streptomycetaceae
EF178695, Streptomyces halstedii, Streptomycetaceae
AB184646, Streptomyces cinereorectus, Streptomycetaceae
AB184711, Streptomyces fulvorobeus, Streptomycetaceae
DQ445795, Streptomyces microflavus, Streptomycetaceae
AY207604, Streptomyces griseus, Streptomycetaceae
AB184860, Streptomyces cyaneofuscatus, Streptomycetaceae
DQ026637, Streptomyces anulatus, Streptomycetaceae
AB184120, Streptomyces chrysomallus subsp. chrysomallus, Streptomycetaceae
AY999784, Streptomyces fimicarius, Streptomycetaceae
AY999894, Streptomyces griseoplanus, Streptomycetaceae
AY999783, Streptomyces badius, Streptomycetaceae
AB184759, Streptomyces sindenensis, Streptomycetaceae
DQ442537, Streptomyces parvus, Streptomycetaceae
AJ781320, Streptomyces atroolivaceus, Streptomycetaceae
DQ026670, Streptomyces clavifer, Streptomycetaceae
AB249951, Streptomyces mutomycini, Streptomycetaceae
AY999788, Streptomyces finlayi, Streptomycetaceae
DQ026663, Streptomyces candidus, Streptomycetaceae
AB184425, Streptomyces albolongus, Streptomycetaceae
DQ445791, Streptomyces cavourensis, Streptomycetaceae
AB184439, Streptomyces bacillaris, Streptomycetaceae
AB184652, Streptomyces crystallinus, Streptomycetaceae
AB184413, Streptomyces avellaneus, Streptomycetaceae
AY999862, Streptomyces psammoticus, Streptomycetaceae
AY207608, Streptomyces aureofaciens, Streptomycetaceae
AY189976, Kitasatospora putterlickiae, Streptomycetaceae
AY260167, Kitasatospora sampliensis, Streptomycetaceae
AB184645, Streptomyces chrysomallus subsp. fumigatus, Streptomycetaceae
AJ781324, Streptomyces purpureus, Streptomycetaceae
AY999858, Streptomyces xanthocidicus, Streptomycetaceae
AY999886, Streptomyces aburaviensis, Streptomycetaceae
AB278569, Kitasatospora kazusensis, Streptomycetaceae
U93324, Kitasatospora mediocidica, Streptomycetaceae
AY442265, Kitasatospora gansuensis, Streptomycetaceae
DQ026645, Kitasatospora atroaurantiaca, Streptomycetaceae
AJ781364, Streptomyces purpeofuscus, Streptomycetaceae
AB184801, Streptomyces herbaricolor, Streptomycetaceae
AB184214, Streptomyces indigoferus, Streptomycetaceae
U93312, Kitasatospora azatica, Streptomycetaceae
AY442263, Kitasatospora nipponensis, Streptomycetaceae
U93322, Kitasatospora kifunensis, Streptomycetaceae
AB022875, Kitasatospora cineracea, Streptomycetaceae
AB249960, Kitasatospora niigatensis, Streptomycetaceae
U93332, Kitasatospora setae, type sp., Streptomycetaceae
U93316, Kitasatospora cochleata, Streptomycetaceae
U93328, Kitasatospora paracochleata, Streptomycetaceae
AY999887, Kitasatospora cystarginea, Streptomycetaceae
U93320, Kitasatospora griseola, Streptomycetaceae
 AF050493, Kitasatospora cheerisanensis, Streptomycetaceae
AB022869, Kitasatospora phosalacinea, Streptomycetaceae
AY442267, Kitasatospora arboriphila, Streptomycetaceae
AY613990, Kitasatospora viridis, Streptomycetaceae
AB278568, Kitasatospora saccharophila, Streptomycetaceae
AY442266, Kitasatospora terrestris, Streptomycetaceae
AY442268, Kitasatospora paranensis, Streptomycetaceae
DQ904546, Streptacidiphilus anmyonensis, Streptomycetaceae
AB249948, Streptacidiphilus jiangxiensis, Streptomycetaceae
DQ994689, Streptacidiphilus melanogenes, Streptomycetaceae
DQ904547, Streptacidiphilus rugosus, Streptomycetaceae
AB249949, Streptacidiphilus neutrinimicus, Streptomycetaceae
AF074415, Streptacidiphilus albus, type sp., Streptomycetaceae
AF074412, Streptacidiphilus carbonis, Streptomycetaceae
EF657884, Streptomyces scopuliridis, Streptomycetaceae
AB184579, Streptomyces sannanensis, Streptomycetaceae
AB184153, Streptomyces michiganensis, Streptomycetaceae
DQ442559, Streptomyces xanthochromogenes, Streptomycetaceae
AB184532, Streptomyces mauvecolor, Streptomycetaceae
DQ141528, Streptomyces polyantibioticus, Streptomycetaceae
AB184222, Streptomyces melanogenes, Streptomycetaceae
AB184287, Streptomyces noboritoensis, Streptomycetaceae
AY999781, Streptomyces amakusaensis, Streptomycetaceae
AB184445, Streptomyces inusitatus, Streptomycetaceae
DQ442523, Streptomyces luridus, Streptomycetaceae
AB184167, Streptomyces roseolilacinus, Streptomycetaceae
AB184666, Streptomyces gobitricini, Streptomycetaceae
AJ781336, Streptomyces lavendofoliae, Streptomycetaceae
DQ442558, Streptomyces werraensis, Streptomycetaceae
AY999790, Streptomyces eurocidicus, Streptomycetaceae
EF178671, Streptomyces netropsis, Streptomycetaceae
AB184720, Streptomyces stramineus, Streptomycetaceae
AB184636, Streptomyces olivoverticillatus, Streptomycetaceae
AB184866, Streptomyces orinoci, Streptomycetaceae
AJ781349, Streptomyces morookaense, Streptomycetaceae
GQ184344, Streptomyces lacticiproducens, Streptomycetaceae
DQ442515, Streptomyces lavenduligriseus, Streptomycetaceae
AB184850, Streptomyces cinnamoneus, Streptomycetaceae
AB184100, Streptomyces pseudoechinosporeus, Streptomycetaceae
AB184819, Streptomyces lilacinus, Streptomycetaceae
DQ442525, Streptomyces luteosporeus, Streptomycetaceae
AB184864, Streptomyces ardus, Streptomycetaceae
AY999802, Streptomyces blastmyceticus, Streptomycetaceae
AB184789, Streptomyces hiroshimensis, Streptomycetaceae
EF178675, Streptomyces caeruleus, Streptomycetaceae
X99943, Streptomyces griseocarneus, Streptomycetaceae
DQ442509, Streptomyces angustmyceticus, Streptomycetaceae
AY999834, Streptomyces abikoensis, Streptomycetaceae
DQ026653, Streptomyces varsoviensis, Streptomycetaceae
AB249969, Streptomyces luteireticuli, Streptomycetaceae
AB184753, Streptomyces thioluteus, Streptomycetaceae
X79323, Streptomyces mashuensis, Streptomycetaceae
DQ442528, Streptomyces mobaraensis, Streptomycetaceae
AB184094, Streptomyces ochraceiscleroticus, Streptomycetaceae
AJ621604, Streptomyces purpurogeneiscleroticus, Streptomycetaceae
AJ621605, Streptomyces violens, Streptomycetaceae
AJ621607, Streptomyces niger, Streptomycetaceae
AJ621606, Streptomyces olivaceiscleroticus, Streptomycetaceae
DQ445790, Streptomyces monomycini, Streptomycetaceae
AB184640, Streptomyces caniferus, Streptomycetaceae
AY999883, Streptomyces hygroscopicus subsp. decoyicus, Streptomycetaceae
AJ781351, Streptomyces libani subsp. rufus, Streptomycetaceae
AB184479, Streptomyces hygroscopicus subsp. glebosus, Streptomycetaceae
AB045882, Streptomyces platensis, Streptomycetaceae
Y15507, Streptomyces lydicus, Streptomycetaceae
AB184414, Streptomyces libani subsp. libani, Streptomycetaceae
AJ621612, Streptomyces tubercidicus, Streptomycetaceae
DQ026662, Streptomyces ramulosus, Streptomycetaceae
AJ621608, Streptomyces sclerotialus, Streptomycetaceae
AB045883, Streptomyces rimosus subsp. rimosus, Streptomycetaceae
AB045880, Streptomyces albofaciens, Streptomycetaceae
AJ621609, Streptomyces chrestomyceticus, Streptomycetaceae
AJ621610, Streptomyces rimosus subsp. paromomycinus, Streptomycetaceae
AJ621613, Streptomyces catenulae, Streptomycetaceae
AB217605, Streptomyces misakiensis, Streptomycetaceae
DQ094838, Streptomyces lunalinharesii, Streptomycetaceae
AJ391816, Streptomyces auratus, Streptomycetaceae
FR692111, Streptomyces staurosporininus, Streptomycetaceae
DQ442530, Streptomyces nigrescens, Streptomycetaceae
DQ026654, Streptomyces sioyaensis, Streptomycetaceae
AY999753, Streptomyces albospinus, Streptomycetaceae
AB024440, Streptomyces albulus, Streptomycetaceae
AB184678, Streptomyces noursei, Streptomycetaceae
AF346818, Streptomyces yunnanensis, Streptomycetaceae
AB184476, Streptomyces celluloflavus, Streptomycetaceae
AB024441, Streptomyces kasugaensis, Streptomycetaceae
FN421338, Streptomyces youssoufiensis, Streptomycetaceae
DQ442546, Streptomyces sulphureus, Streptomycetaceae
AB184090, Streptomyces cuspidosporus, Streptomycetaceae
AB184301, Streptomyces sparsogenes, Streptomycetaceae
EU170123, Streptomyces aldersoniae, Streptomycetaceae
EU170126, Streptomyces milbemycinicus, Streptomycetaceae
EU170124, Streptomyces wellingtoniae, Streptomycetaceae
EU170121, Streptomyces ascomycinicus, Streptomycetaceae
AB249974, Streptomyces sulfonofaciens, Streptomycetaceae
EF408733, Streptomyces rapamycinicus, Streptomycetaceae
AB249918, Streptomyces malaysiensis, Streptomycetaceae
EU077190, Streptomyces samsunensis, Streptomycetaceae
FJ472862, Streptomyces iranensis, Streptomycetaceae
AB184428, Streptomyces hygroscopicus subsp. hygroscopicus, Streptomycetaceae
AB249933, Streptomyces sporocinereus, Streptomycetaceae
AY999911, Streptomyces endus, Streptomycetaceae
DQ334782, Streptomyces demainii, Streptomycetaceae
AJ391812, Streptomyces albiflaviniger, Streptomycetaceae
AB184420, Streptomyces violaceusniger, Streptomycetaceae
AB249942, Streptomyces yogyakartensis, Streptomycetaceae
AJ391818, Streptomyces griseiniger, Streptomycetaceae
AJ391833, Streptomyces javensis, Streptomycetaceae
AJ391831, Streptomyces cangkringensis, Streptomycetaceae
DQ334783, Streptomyces indonesiensis, Streptomycetaceae
AB249947, Streptomyces asiaticus, Streptomycetaceae
AB249941, Streptomyces rhizosphaericus, Streptomycetaceae
DQ334781, Streptomyces geldanamycininus, Streptomycetaceae
AB249962, Streptomyces yatensis, Streptomycetaceae
 AJ271887, Streptomyces melanosporofaciens, Streptomycetaceae
AB184185, Streptomyces antimycoticus, Streptomycetaceae
AB249934, Streptomyces sporoclivatus, Streptomycetaceae
AY508511, Streptomyces castelarensis, Streptomycetaceae
EF408735, Streptomyces mordarskii, Streptomycetaceae
EF408736, Streptomyces himastatinicus, Streptomycetaceae
AB184624, Streptomyces aculeolatus, Streptomycetaceae
EF121313, Streptomyces synnematoformans, Streptomycetaceae
AB184501, Streptomyces albus subsp. pathocidicus, Streptomycetaceae
AY277529, Streptomyces hebeiensis, Streptomycetaceae
AM934703, Streptomyces specialis, Streptomycetaceae
EU925562, Streptomyces sedi, Streptomycetaceae
EU399234, Streptomyces avicenniae, Streptomycetaceae
AM398645, Streptomyces hainanensis, Streptomycetaceae
EU200683, Streptomyces mayteni, Streptomycetaceae
DQ442494, Streptomyces carpaticus, Streptomycetaceae
AY822606, Streptomyces cheonanensis, Streptomycetaceae
EF012099, Streptomyces xiamenensis, Streptomycetaceae
AY236339, Streptomyces sodiiphilus, Streptomycetaceae
AB473557, Streptomyces rubrus, Streptomycetaceae
AB473554, Streptomyces marinus, Streptomycetaceae
EU589334, Streptomyces nanshensis, Streptomycetaceae
AB473556, Streptomyces haliclonae, Streptomycetaceae
AB473555, Streptomyces tateyamensis, Streptomycetaceae
FR692107, Streptomyces cocklensis, Streptomycetaceae
AB184771, Streptomyces almquistii, Streptomycetaceae
AB184663, Streptomyces gibsonii, Streptomycetaceae
AB184295, Streptomyces rangoonensis, Streptomycetaceae
AJ621602, Streptomyces albus subsp. albus, type sp., Streptomycetaceae
AB184272, Streptomyces flocculus, Streptomycetaceae
HQ660227, Streptomyces qinglanensis, Streptomycetaceae
AB184115, Streptomyces cacaoi subsp. cacaoi, Streptomycetaceae
AB018092, Streptomyces armeniacus, Streptomycetaceae
EU200685, Streptomyces artemisiae, Streptomycetaceae
FR693804, Streptomyces pharmamarensis, Streptomycetaceae
AB245388, Streptomyces panacagri, Streptomycetaceae
AY999901, Streptomyces albiaxialis, Streptomycetaceae
AY262826, Streptomyces ferralitis, Streptomycetaceae
EF577247, Streptomyces xinghaiensis, Streptomycetaceae
AY876941, Streptomyces rubidus, Streptomycetaceae
AF101415, Streptomyces yeochonensis, Streptomycetaceae
EU683612, Streptomyces axinellae, Streptomycetaceae
DQ460470, Streptomyces alni, Streptomycetaceae
AY876943, Streptomyces paucisporeus, Streptomycetaceae
AY876940, Streptomyces yanglinensis, Streptomycetaceae
AB249964, Streptomyces glauciniger, Streptomycetaceae
AY876942, Streptomyces guanduensis, Streptomycetaceae
AB441718, Streptomyces baliensis, Streptomycetaceae
AJ849545, Streptomyces sparsus, Streptomycetaceae
Z68099, Streptomyces macrosporus, Streptomycetaceae
AB184617, Streptomyces megasporus, Streptomycetaceae
AB184664, Streptomyces glaucosporus, Streptomycetaceae
GU356598, Streptomyces fenghuangensis, Streptomycetaceae
GQ871748, Streptomyces nanhaiensis, Streptomycetaceae
DQ912930, Streptomyces radiopugnans, Streptomycetaceae
Z68097, Streptomyces thermolineatus, Streptomycetaceae
AB184589, Streptomyces vitaminophilus, Streptomycetaceae
DQ208700, Streptacidiphilus oryzae, Streptomycetaceae
AB030585, Streptomyces scabrisporus, Streptomycetaceae
AB522686, Streptomyces aomiensis, Streptomycetaceae

FM998003, Motilibacter peucedani, type sp., Unclassified suborder Frankineae

Catenulisporaceae (4)
AJ865857, Catenulispora acidiphila, type sp., Catenulisporaceae
AB180773, Catenulispora rubra, Catenulisporaceae
AB327248, Catenulispora subtropica, Catenulisporaceae
AB327250, Catenulispora yoronensis, Catenulisporaceae

Actinospicaceae (2)
AJ865861, Actinospica acidiphila, Actinospicaceae
AJ865863, Actinospica robiniae, type sp., Actinospicaceae

Mycobacteriaceae (151)
X52934, Mycobacterium avium subsp. paratuberculosis, Mycobacteriaceae
EF521891, Mycobacterium avium subsp. silvaticum, Mycobacteriaceae
AJ536037, Mycobacterium avium subsp. avium, Mycobacteriaceae
EU834055, Mycobacterium vulneris, Mycobacteriaceae
EF591053, Mycobacterium bouchedurhonense, Mycobacteriaceae
AM062764, Mycobacterium colombiense, Mycobacteriaceae
FJ042897, Mycobacterium mantenii, Mycobacteriaceae
EF054881, Mycobacterium arosiense, Mycobacteriaceae
AJ536036, Mycobacterium intracellulare, Mycobacteriaceae
AJ548480, Mycobacterium chimaera, Mycobacteriaceae
EU266632, Mycobacterium marseillense, Mycobacteriaceae
GQ153270, Mycobacterium paraffinicum, Mycobacteriaceae
AF480604, Mycobacterium scrofulaceum, Mycobacteriaceae
DQ536403, Mycobacterium seoulense, Mycobacteriaceae
DQ536404, Mycobacterium paraseoulense, Mycobacteriaceae
X52930, Mycobacterium malmoense, Mycobacteriaceae
AY368456, Mycobacterium nebraskense, Mycobacteriaceae
U84502, Mycobacterium bohemicum, Mycobacteriaceae
AJ131120, Mycobacterium caprae, Mycobacteriaceae
X58890, Mycobacterium tuberculosis, type sp., Mycobacteriaceae
AF480605, Mycobacterium africanum, Mycobacteriaceae
AF480584, Mycobacterium microti, Mycobacteriaceae
AF502574, Mycobacterium pinnipedii, Mycobacteriaceae
AF456240, Mycobacterium marinum, Mycobacteriaceae
AB548725, Mycobacterium ulcerans, Mycobacteriaceae
AY570988, Mycobacterium pseudoshottsii, Mycobacteriaceae
AY005147, Mycobacterium shottsii, Mycobacteriaceae
AB268503, Mycobacterium shinjukuense, Mycobacteriaceae
AF406783, Mycobacterium lacus, Mycobacteriaceae
AF480602, Mycobacterium gastri, Mycobacteriaceae
AJ536035, Mycobacterium kansasii, Mycobacteriaceae
X67847, Mycobacterium intermedium, Mycobacteriaceae
AJ012756, Mycobacterium botniense, Mycobacteriaceae
AJ536033, Mycobacterium xenopi, Mycobacteriaceae
AF174290, Mycobacterium heckeshornense, Mycobacteriaceae
EU239955, Mycobacterium noviomagense, Mycobacteriaceae
AJ005005, Mycobacterium shimoidei, Mycobacteriaceae
EU274642, Mycobacterium riyadhense, Mycobacteriaceae
X52926, Mycobacterium szulgai, Mycobacteriaceae
 X88922, Mycobacterium conspicuum, Mycobacteriaceae
AJ616230, Mycobacterium florentinum, Mycobacteriaceae
AM884331, Mycobacterium stomatepiae, Mycobacteriaceae
AF330038, Mycobacterium montefiorense, Mycobacteriaceae
X60070, Mycobacterium genavense, Mycobacteriaceae
U57632, Mycobacterium triplex, Mycobacteriaceae
AF466821, Mycobacterium parmense, Mycobacteriaceae
AJ000684, Mycobacterium heidelbergense, Mycobacteriaceae
AF480583, Mycobacterium lentiflavum, Mycobacteriaceae
X52931, Mycobacterium simiae, Mycobacteriaceae
AY353699, Mycobacterium sherrisii, Mycobacteriaceae
HM022196, Mycobacterium europaeum, Mycobacteriaceae
AY337273, Mycobacterium parascrofulaceum, Mycobacteriaceae
AF133902, Mycobacterium kubicae, Mycobacteriaceae
AJ308603, Mycobacterium palustre, Mycobacteriaceae
HM037998, Mycobacterium interjectum, Mycobacteriaceae
AY208856, Mycobacterium saskatchewanense, Mycobacteriaceae
X52923, Mycobacterium gordonae, Mycobacteriaceae
AF480595, Mycobacterium asiaticum, Mycobacteriaceae
AF480574, Mycobacterium branderi, Mycobacteriaceae
AB370111, Mycobacterium kyorinense, Mycobacteriaceae
L08169, Mycobacterium celatum, Mycobacteriaceae
X53896, Mycobacterium cookii, Mycobacteriaceae
DQ157760, Mycobacterium arupense, Mycobacteriaceae
X52928, Mycobacterium nonchromogenicum, Mycobacteriaceae
X67096, Mycobacterium hiberniae, Mycobacteriaceae
DQ536408, Mycobacterium senuense, Mycobacteriaceae
AB239925, Mycobacterium kumamotonense, Mycobacteriaceae
GU564404, Mycobacterium algericum, Mycobacteriaceae
M29568, Mycobacterium terrae, Mycobacteriaceae
X55603, Mycobacterium chitae, Mycobacteriaceae
AF480600, Mycobacterium fallax, Mycobacteriaceae
JF271826, Mycobacterium koreense, Mycobacteriaceae
DQ058405, Mycobacterium triviale, Mycobacteriaceae
AF480576, Mycobacterium brumae, Mycobacteriaceae
AJ010747, Mycobacterium elephantis, Mycobacteriaceae
AJ310467, Mycobacterium holsaticum, Mycobacteriaceae
AJ429046, Mycobacterium pulveris, Mycobacteriaceae
AJ634379, Mycobacterium confluentis, Mycobacteriaceae
AB537170, Mycobacterium madagascariense, Mycobacteriaceae
U49401, Mycobacterium hassiacum, Mycobacteriaceae
X55602, Mycobacterium thermoresistibile, Mycobacteriaceae
AJ429044, Mycobacterium moriokaense, Mycobacteriaceae
AB537171, Mycobacterium murale, Mycobacteriaceae
AF480590, Mycobacterium tokaiense, Mycobacteriaceae
X55594, Mycobacterium gadium, Mycobacteriaceae
Y12872, Mycobacterium goodii, Mycobacteriaceae
AJ131761, Mycobacterium smegmatis, Mycobacteriaceae
AJ699399, Mycobacterium mageritense, Mycobacteriaceae
AY457083, Mycobacterium wolinskyi, Mycobacteriaceae
U94745, Mycobacterium duvalii, Mycobacteriaceae
AJ429045, Mycobacterium agri, Mycobacteriaceae
X52932, Mycobacterium flavescens, Mycobacteriaceae
DQ370011, Mycobacterium rutilum, Mycobacteriaceae
X55595, Mycobacterium aurum, Mycobacteriaceae
AJ431371, Mycobacterium pyrenivorans, Mycobacteriaceae
X93182, Mycobacterium austroafricanum, Mycobacteriaceae
X84977, Mycobacterium vanbaalenii, Mycobacteriaceae
AF480591, Mycobacterium vaccae, Mycobacteriaceae
AF264700, Mycobacterium doricum, Mycobacteriaceae
AF107039, Mycobacterium monacense, Mycobacteriaceae
GU997640, Mycobacterium litorale, Mycobacteriaceae
U96747, Mycobacterium novocastrense, Mycobacteriaceae
AF058299, Mycobacterium tusciae, Mycobacteriaceae
AF480597, Mycobacterium chubuense, Mycobacteriaceae
AY943385, Mycobacterium rufum, Mycobacteriaceae
X79292, Mycobacterium chlorophenolicum, Mycobacteriaceae
AF480589, Mycobacterium poriferae, Mycobacteriaceae
AJ534886, Mycobacterium psychrotolerans, Mycobacteriaceae
X55597, Mycobacterium obuense, Mycobacteriaceae
X93183, Mycobacterium parafortuitum, Mycobacteriaceae
X81996, Mycobacterium gilvum, Mycobacteriaceae
X55598, Mycobacterium aichiense, Mycobacteriaceae
AY943386, Mycobacterium aromaticivorans, Mycobacteriaceae
AJ429047, Mycobacterium rhodesiae, Mycobacteriaceae
AF023664, Mycobacterium alvei, Mycobacteriaceae
AY457069, Mycobacterium peregrinum, Mycobacteriaceae
AY457070, Mycobacterium septicum, Mycobacteriaceae
AY457077, Mycobacterium porcinum, Mycobacteriaceae
AY457068, Mycobacterium neworleansense, Mycobacteriaceae
AY859684, Mycobacterium conceptionense, Mycobacteriaceae
X55591, Mycobacterium komossense, Mycobacteriaceae
AY012573, Mycobacterium boenickei, Mycobacteriaceae
FR733720, Mycobacterium fortuitum subsp. acetamidolyticum, Mycobacteriaceae
AY457066, Mycobacterium fortuitum subsp. fortuitum, Mycobacteriaceae
EF138818, Mycobacterium setense, Mycobacteriaceae
AY457067, Mycobacterium houstonense, Mycobacteriaceae
AY457081, Mycobacterium senegalense, Mycobacteriaceae
AY457084, Mycobacterium farcinogenes, Mycobacteriaceae
AJ617741, Mycobacterium fluoranthenivorans, Mycobacteriaceae
AJ276274, Mycobacterium frederiksbergense, Mycobacteriaceae
AF480599, Mycobacterium diernhoferi, Mycobacteriaceae
X93184, Mycobacterium hodleri, Mycobacteriaceae
AY012577, Mycobacterium brisbanense, Mycobacteriaceae
AY255478, Mycobacterium canariasense, Mycobacteriaceae
AY449728, Mycobacterium cosmeticum, Mycobacteriaceae
AF480593, Mycobacterium neoaurum, Mycobacteriaceae
AY457071, Mycobacterium abscessus subsp. abscessus, Mycobacteriaceae
AY859681, Mycobacterium abscessus subsp. bolletii, Mycobacteriaceae
AY457072, Mycobacterium chelonae, Mycobacteriaceae
DQ866768, Mycobacterium salmoniphilum, Mycobacteriaceae
AY859683, Mycobacterium aubagnense, Mycobacteriaceae
AJ746070, Mycobacterium llatzerense, Mycobacteriaceae
AY457074, Mycobacterium mucogenicum, Mycobacteriaceae
AY859682, Mycobacterium phocaicum, Mycobacteriaceae
DQ534008, Mycobacterium crocinum, Mycobacteriaceae
DQ370008, Mycobacterium pallens, Mycobacteriaceae
EU605695, Mycobacterium insubricum, Mycobacteriaceae
AF480603, Mycobacterium phlei, Mycobacteriaceae
FR733719, Mycobacterium sphagni, Mycobacteriaceae
EF564379, Amycolicicoccus subflavus , Mycobacteriaceae
FJ179485, Hoyosella altamirensis, type sp., Unclassified suborder Corynebacterineae

AB491283, Tomitella biformata, type sp., Unclassified suborder Corynebacterineae

Tsukamurellaceae (11)
AY238513, Tsukamurella pseudospumae, Tsukamurellaceae
AF150494, Tsukamurella sunchonensis, Tsukamurellaceae
X92981, Tsukamurella pulmonis, Tsukamurellaceae
AY714239, Tsukamurella spongiae, Tsukamurellaceae
EU521689, Tsukamurella carboxydivorans, Tsukamurellaceae
AY238514, Tsukamurella tyrosinosolvens, Tsukamurellaceae
AF283283, Tsukamurella strandjordii, Tsukamurellaceae
Z37150, Tsukamurella spumae, Tsukamurellaceae
AF283281, Tsukamurella inchonensis, Tsukamurellaceae
AF283280, Tsukamurella paurometabola, type sp., Tsukamurellaceae
FJ917743, Tsukamurella soli, Tsukamurellaceae

Corynebacteriaceae (88)
X96497, Corynebacterium coyleae, Corynebacteriaceae
FN295567, Corynebacterium pilbarense, Corynebacteriaceae
AM397636, Corynebacterium ureicelerivorans, Corynebacteriaceae
X82055, Corynebacterium afermentans subsp. lipophilum, Corynebacteriaceae
X82054, Corynebacterium afermentans subsp. afermentans, Corynebacteriaceae
Y11200, Corynebacterium mucifaciens, Corynebacteriaceae
X86688, Corynebacterium glucuronolyticum, Corynebacteriaceae
FJ185225, Corynebacterium pyruviciproducens, Corynebacteriaceae
X84252, Corynebacterium cystitidis, Corynebacteriaceae
AJ297402, Corynebacterium capitovis, Corynebacteriaceae
X84241, Corynebacterium mycetoides, Corynebacteriaceae
Y09045, Corynebacterium lipophiloflavum, Corynebacteriaceae
X81873, Corynebacterium auris, Corynebacteriaceae
EF217055, Corynebacterium timonense, Corynebacteriaceae
Y09655, Corynebacterium sundsvallense, Corynebacteriaceae
AF010474, Corynebacterium thomssenii, Corynebacteriaceae
Y09044, Corynebacterium imitans, Corynebacteriaceae
Y14651, Corynebacterium riegelii, Corynebacteriaceae
AJ431634, Corynebacterium glaucum, Corynebacteriaceae
AJ314919, Corynebacterium appendicis, Corynebacteriaceae
AY677186, Corynebacterium tuscaniense, Corynebacteriaceae
Y09569, Corynebacterium camporealensis, Corynebacteriaceae
AJ555193, Corynebacterium ciconiae, Corynebacteriaceae
EF217056, Corynebacterium massiliense, Corynebacteriaceae
AJ438050, Corynebacterium tuberculostearicum, Corynebacteriaceae
AJ439346, Corynebacterium accolens, Corynebacteriaceae
AJ439345, Corynebacterium macginleyi, Corynebacteriaceae
X84438, Corynebacterium propinquum, Corynebacteriaceae
AJ439343, Corynebacterium pseudodiphtheriticum, Corynebacteriaceae
Y15886, Corynebacterium confusum, Corynebacteriaceae
X84678, Corynebacterium minutissimum, Corynebacteriaceae
Y10999, Corynebacterium singulare, Corynebacteriaceae
AJ309207, Corynebacterium aurimucosum, Corynebacteriaceae
AJ012837, Corynebacterium simulans, Corynebacteriaceae
X84442, Corynebacterium striatum, Corynebacteriaceae
AF267152, Corynebacterium casei, Corynebacteriaceae
FJ172667, Corynebacterium stationis, Corynebacteriaceae
X84440, Corynebacterium ammoniagenes, Corynebacteriaceae
Y10076, Corynebacterium phocae, Corynebacteriaceae
X84441, Corynebacterium flavescens, Corynebacteriaceae
AJ441057, Corynebacterium atypicum, Corynebacteriaceae
X73976, Turicella otitidis, type sp., Corynebacteriaceae
Z97069, Corynebacterium durum, Corynebacteriaceae
Y09806, Corynebacterium mastitidis, Corynebacteriaceae
AJ566641, Corynebacterium caspium, Corynebacteriaceae
X81909, Corynebacterium renale, Corynebacteriaceae
FJ157329, Corynebacterium freiburgense, Corynebacteriaceae
GQ871934, Corynebacterium canis, Corynebacteriaceae
AJ429234, Corynebacterium spheniscorum, Corynebacteriaceae
EU998655, Corynebacterium doosanense, Corynebacteriaceae
AY226509, Corynebacterium halotolerans, Corynebacteriaceae
FJ423600, Corynebacterium maris, Corynebacteriaceae
FM173119, Corynebacterium lubricantis, Corynebacteriaceae
X81908, Corynebacterium pilosum, Corynebacteriaceae
X81916, Corynebacterium pseudotuberculosis, Corynebacteriaceae
X84256, Corynebacterium ulcerans, Corynebacteriaceae
X81871, Corynebacterium kutscheri, Corynebacteriaceae
X82065, Corynebacterium matruchotii, Corynebacteriaceae
FJ374773, Corynebacterium mustelae, Corynebacteriaceae
X84248, Corynebacterium diphtheriae, type sp., Corynebacteriaceae
AJ401282, Corynebacterium felinum, Corynebacteriaceae
AJ295841, Corynebacterium testudinoris, Corynebacteriaceae
AJ496733, Corynebacterium aquilae, Corynebacteriaceae
X83955, Corynebacterium argentoratense, Corynebacteriaceae
DQ219354, Corynebacterium marinum, Corynebacteriaceae
GQ421281, Corynebacterium humireducens, Corynebacteriaceae
AF314192, Corynebacterium glutamicum, Corynebacteriaceae
HQ612241, Corynebacterium deserti, Corynebacteriaceae
X84251, Corynebacterium callunae, Corynebacteriaceae
AB055963, Corynebacterium efficiens, Corynebacteriaceae
AJ243819, Corynebacterium auriscanis, Corynebacteriaceae
AB128981, Corynebacterium resistens, Corynebacteriaceae
AJ504424, Corynebacterium suicordis, Corynebacteriaceae
X84250, Corynebacterium jeikeium, Corynebacteriaceae
X81913, Corynebacterium urealyticum, Corynebacteriaceae
Y13024, Corynebacterium falsenii, Corynebacteriaceae
X84444, Corynebacterium bovis, Corynebacteriaceae
HM165487, Corynebacterium nuruki, Corynebacteriaceae
AJ222815, Corynebacterium variabile, Corynebacteriaceae
AB004730, Corynebacterium terpenotabidum, Corynebacteriaceae
Y10077, Corynebacterium kroppenstedtii, Corynebacteriaceae
AJ292762, Corynebacterium freneyi, Corynebacteriaceae
X81914, Corynebacterium xerosis, Corynebacteriaceae
AM946639, Corynebacterium hansenii, Corynebacteriaceae
X82057, Corynebacterium amycolatum, Corynebacteriaceae
AM930556, Corynebacterium sputi, Corynebacteriaceae
AJ440964, Corynebacterium sphenisci, Corynebacteriaceae
AM922112, Corynebacterium ulceribovis, Corynebacteriaceae

Dietziaceae (13)
EU375846, Dietzia cercidiphylli, Dietziaceae
X92157, Dietzia natronolimnaea, Dietziaceae
AB049630, Dietzia psychralcaliphila, Dietziaceae
EU821598, Dietzia lutea, Dietziaceae
X79290, Dietzia maris, type sp., Dietziaceae
EU375845, Dietzia schimae, Dietziaceae
AY972480, Dietzia kunjamensis, Dietziaceae
GQ368824, Dietzia alimentaria, Dietziaceae
FR821260, Dietzia aurantiaca, Dietziaceae
 FM995533, Dietzia aerolata, Dietziaceae
AJ920289, Dietzia cinnamea, Dietziaceae
AY643401, Dietzia papillomatosis, Dietziaceae
AB377289, Dietzia timorensis, Dietziaceae

Nocardiaceae 2 (41)
X80635, Gordonia amarae, Nocardiaceae
AB162799, Gordonia effusa, Nocardiaceae
X87340, Gordonia hydrophobica, Nocardiaceae
AM406674, Gordonia malaquae, Nocardiaceae
FN561544, Gordonia humi, Nocardiaceae
FJ938167, Gordonia neofelifaecis, Nocardiaceae
EU244645, Gordonia cholesterolivorans, Nocardiaceae
AJ416151, Gordonia sihwensis, Nocardiaceae
X93485, Gordonia hirsuta, Nocardiaceae
DQ420167, Gordonia shandongensis, Nocardiaceae
AF101418, Gordonia amicalis, Nocardiaceae
AF101416, Gordonia desulfuricans, Nocardiaceae
AF432348, Gordonia paraffinivorans, Nocardiaceae
AY995557, Gordonia rubripertincta, Nocardiaceae
Y18054, Gordonia alkanivorans, Nocardiaceae
AJ312907, Gordonia westfalica, Nocardiaceae
AF380930, Gordonia namibiensis, Nocardiaceae
EF151959, Gordonia lacunae, Nocardiaceae
X79286, Gordonia terrae, Nocardiaceae
AB162800, Gordonia araii, Nocardiaceae
AY650265, Gordonia defluvii, Nocardiaceae
AM883151, Gordonia kroppenstedtii, Nocardiaceae
AB122026, Gordonia otitidis, Nocardiaceae
X80634, Gordonia sputi, Nocardiaceae
X80633, Gordonia aichiensis, Nocardiaceae
AB004729, Gordonia rhizosphera, Nocardiaceae
X79287, Gordonia bronchialis, type sp., Nocardiaceae
AF380834, Gordonia sinesedis, Nocardiaceae
AY894336, Williamsia marianensis, Nocardiaceae
Y17384, Williamsia muralis, type sp., Nocardiaceae
HQ157192, Williamsia limnetica, Nocardiaceae
DQ157929, Williamsia faeni, Nocardiaceae
AB010909, Williamsia maris, Nocardiaceae
FR691321, Williamsia phyllosphaerae, Nocardiaceae
AJ920290, Williamsia deligens, Nocardiaceae
AM283464, Williamsia serinedens, Nocardiaceae
FJ572038, Gordonia hankookensis, Nocardiaceae
AY995560, Gordonia soli, Nocardiaceae
Y18310, Gordonia polyisoprenivorans, Nocardiaceae
AY534742, Millisia brevis, type sp., Nocardiaceae
Z35435, Skermania piniformis, type sp., Nocardiaceae

AY233201, Rhodococcus gordoniae, Nocardiaceae

AF173005, Rhodococcus pyridinivorans, Nocardiaceae
GU367155, Rhodococcus artemisiae, Nocardiaceae
X79288, Rhodococcus rhodochrous, type sp., Nocardiaceae
U93340, Rhodococcus coprophilus, Nocardiaceae
AF447391, Rhodococcus aetherivorans, Nocardiaceae
X80625, Rhodococcus ruber, Nocardiaceae
AF191343, Rhodococcus zopfii, Nocardiaceae
AY533293, Rhodococcus phenolicus, Nocardiaceae
AF430066, Rhodococcus corynebacterioides, Nocardiaceae
AY726605, Rhodococcus kroppenstedtii, Nocardiaceae
AY525785, Rhodococcus imtechensis, Nocardiaceae
AF124342, Rhodococcus koreensis, Nocardiaceae
Z37138, Rhodococcus wratislaviensis, Nocardiaceae
X80630, Rhodococcus opacus, Nocardiaceae
X92114, Rhodococcus percolatus, Nocardiaceae
X80617, Rhodococcus marinonascens, Nocardiaceae
AB046357, Rhodococcus jostii, Nocardiaceae
AF416566, Rhodococcus maanshanensis, Nocardiaceae
AB067734, Rhodococcus tukisamuensis, Nocardiaceae
DQ090961, Rhodococcus qingshengii, Nocardiaceae
DQ185597, Rhodococcus jialingiae, Nocardiaceae
AB071951, Rhodococcus baikonurensis, Nocardiaceae
FR733721, Nocardia coeliaca, Nocardiaceae
X79289, Rhodococcus erythropolis, Nocardiaceae
FR749915, Nocardia globerula, Nocardiaceae
X80619, Rhodococcus globerulus, Nocardiaceae
AB269261, Rhodococcus kyotonensis, Nocardiaceae
AY602219, Rhodococcus yunnanensis, Nocardiaceae
X79186, Rhodococcus fascians, Nocardiaceae
X80621, Rhodococcus rhodnii, Nocardiaceae
AJ854055, Rhodococcus triatomae, Nocardiaceae

Nocardiaceae 1 (87)
AB126880, Nocardia concava, Nocardiaceae
AF430039, Nocardia seriolae, Nocardiaceae
AF430067, Nocardia otitidiscaviarum, Nocardiaceae
AF430044, Nocardia uniformis, Nocardiaceae
AB092560, Nocardia inohanensis, Nocardiaceae
AB092561, Nocardia yamanashiensis, Nocardiaceae
DQ659910, Nocardia niigatensis, Nocardiaceae
AM402972, Nocardia acidivorans, Nocardiaceae
AF430049, Nocardia crassostreae, Nocardiaceae
AF430028, Nocardia nova, Nocardiaceae
FR733723, Nocardia mexicana, Nocardiaceae
HQ157184, Nocardia thraciensis, Nocardiaceae
GU367157, Nocardia artemisiae, Nocardiaceae
AB201298, Nocardia terpenica, Nocardiaceae
AF430042, Nocardia pseudobrasiliensis, Nocardiaceae
AY639902, Nocardia jiangxiensis, Nocardiaceae
AY639901, Nocardia miyunensis, Nocardiaceae
AY779043, Nocardia lijiangensis, Nocardiaceae
AY626158, Nocardia polyresistens, Nocardiaceae
AY333115, Nocardia xishanensis, Nocardiaceae
AB158277, Nocardia takedensis, Nocardiaceae
AB187522, Nocardia exalbida, Nocardiaceae
DQ235272, Nocardia gamkensis, Nocardiaceae
EU006090, Nocardia altamirensis, Nocardiaceae
AF430038, Nocardia brasiliensis, Nocardiaceae
DQ925490, Nocardia iowensis, Nocardiaceae
AJ556157, Nocardia tenerifensis, Nocardiaceae
AF430052, Nocardia cummidelens, Nocardiaceae
AF430051, Nocardia soli, Nocardiaceae
AF277204, Nocardia fluminea, Nocardiaceae
AF430050, Nocardia salmonicida, Nocardiaceae
DQ235688, Nocardia coubleae, Nocardiaceae
 AJ303008, Nocardia ignorata, Nocardiaceae
AY964666, Nocardia jejuensis, Nocardiaceae
DQ235687, Nocardia ninae, Nocardiaceae
AY222321, Nocardia alba, Nocardiaceae
AF430046, Nocardia pseudovaccinii, Nocardiaceae
AB024312, Nocardia vinacea, Nocardiaceae
AB162801, Nocardia anaemiae, Nocardiaceae
AF459443, Nocardia caishijiensis, Nocardiaceae
HQ157183, Nocardia goodfellowii, Nocardiaceae
AY282603, Nocardia neocaledoniensis, Nocardiaceae
AF430019, Nocardia asteroides, type sp., Nocardiaceae
AF430035, Nocardia carnea, Nocardiaceae
EF418604, Nocardia rhamnosiphila, Nocardiaceae
AB121770, Nocardia sienata, Nocardiaceae
AB192415, Nocardia testacea, Nocardiaceae
AF219974, Nocardia pigrifrangens, Nocardiaceae
Z46754, Nocardia flavorosea, Nocardiaceae
DQ462650, Nocardia jinanensis, Nocardiaceae
AM422449, Nocardia speluncae, Nocardiaceae
FR729900, Nocardia grenadensis, Nocardiaceae
FJ805428, Nocardia callitridis, Nocardiaceae
HM153801, Nocardia endophytica, Nocardiaceae
DQ282122, Nocardia harenae, Nocardiaceae
AF430040, Nocardia brevicatena, Nocardiaceae
AF430041, Nocardia paucivorans, Nocardiaceae
AF430027, Nocardia cyriacigeorgica, Nocardiaceae
AF218292, Nocardia abscessus, Nocardiaceae
AB126876, Nocardia aobensis, Nocardiaceae
AF060790, Nocardia cerradoensis, Nocardiaceae
EU484388, Nocardia mikamii, Nocardiaceae
AY441974, Nocardia kruczakiae, Nocardiaceae
AF430055, Nocardia veterana, Nocardiaceae
AF430054, Nocardia africana, Nocardiaceae
AJ854057, Nocardia elegans, Nocardiaceae
AB126873, Nocardia vermiculata, Nocardiaceae
AF430045, Nocardia vaccinii, Nocardiaceae
AB126874, Nocardia thailandica, Nocardiaceae
AB108775, Nocardia shimofusensis, Nocardiaceae
AB108778, Nocardia higoensis, Nocardiaceae
AJ508748, Nocardia puris, Nocardiaceae
AB108779, Nocardia araoensis, Nocardiaceae
FJ765056, Nocardia niwae, Nocardiaceae
AB108781, Nocardia arthritidis, Nocardiaceae
AB275164, Nocardia amamiensis, Nocardiaceae
AB108780, Nocardia pneumoniae, Nocardiaceae
AB184754, Streptomyces gardneri, Streptomycetaceae
AF154129, Nocardia beijingensis, Nocardiaceae
AB092566, Nocardia asiatica, Nocardiaceae
EU099360, Nocardia blacklockiae, Nocardiaceae
AF430047, Nocardia transvalensis, Nocardiaceae
EU099357, Nocardia wallacei, Nocardiaceae
Z36936, Nocardia farcinica, Nocardiaceae
DQ997045, Rhodococcus kunmingensis, Nocardiaceae
AF490539, Rhodococcus equi, Nocardiaceae
AB243007, Smaragdicoccus niigatensis, type sp., Nocardiaceae

Segniliparaceae (2)
AY608918, Segniliparus rotundus, type sp., Segniliparaceae
AY608920, Segniliparus rugosus, Segniliparaceae

Pseudonocardiaceae (218)
AY957506, Amycolatopsis benzoatilytica, Pseudonocardiaceae
AB248537, Amycolatopsis niigatensis, Pseudonocardiaceae
AB248535, Amycolatopsis echigonensis, Pseudonocardiaceae
AJ252832, Amycolatopsis albidoflavus, Pseudonocardiaceae
DQ000196, Amycolatopsis halotolerans, Pseudonocardiaceae
HQ021204, Amycolatopsis equina, Pseudonocardiaceae
HQ021203, Amycolatopsis hippodromi, Pseudonocardiaceae
HQ021202, Amycolatopsis circi, Pseudonocardiaceae
AF222022, Amycolatopsis rubida, Pseudonocardiaceae
AJ508240, Amycolatopsis vancoresmycina, Pseudonocardiaceae
AJ293757, Amycolatopsis tolypomycina, Pseudonocardiaceae
AY262825, Amycolatopsis plumensis, Pseudonocardiaceae
AY183358, Amycolatopsis lexingtonensis, Pseudonocardiaceae
AY183356, Amycolatopsis pretoriensis, Pseudonocardiaceae
AY083603, Amycolatopsis rifamycinica, Pseudonocardiaceae
AY183357, Amycolatopsis kentuckyensis, Pseudonocardiaceae
AJ508239, Amycolatopsis balhimycina, Pseudonocardiaceae
AJ293754, Amycolatopsis mediterranei, Pseudonocardiaceae
AY129753, Amycolatopsis australiensis, Pseudonocardiaceae
AJ293753, Amycolatopsis coloradensis, Pseudonocardiaceae
AF051340, Amycolatopsis alba, Pseudonocardiaceae
FJ581021, Amycolatopsis thailandensis, Pseudonocardiaceae
AJ400711, Amycolatopsis orientalis, type sp., Pseudonocardiaceae
AY129760, Amycolatopsis regifaucium, Pseudonocardiaceae
AJ508238, Amycolatopsis keratiniphila subsp. nogabecina, Pseudonocardiaceae
AJ278496, Amycolatopsis keratiniphila subsp. keratiniphila, Pseudonocardiaceae
AJ508237, Amycolatopsis decaplanina, Pseudonocardiaceae
AJ508236, Amycolatopsis japonica, Pseudonocardiaceae
AJ293755, Amycolatopsis lurida, Pseudonocardiaceae
AJ400709, Amycolatopsis azurea, Pseudonocardiaceae
DQ076482, Amycolatopsis minnesotensis, Pseudonocardiaceae
DQ486888, Amycolatopsis nigrescens, Pseudonocardiaceae
GQ381310, Amycolatopsis samaneae, Pseudonocardiaceae
DQ792500, Amycolatopsis saalfeldensis, Pseudonocardiaceae
FJ529702, Amycolatopsis xylanica, Pseudonocardiaceae
DQ000200, Amycolatopsis jejuensis, Pseudonocardiaceae
AJ293756, Amycolatopsis sulphurea, Pseudonocardiaceae
FM177516, Amycolatopsis ultiminotia, Pseudonocardiaceae
EU329845, Amycolatopsis marina, Pseudonocardiaceae
AF479268, Amycolatopsis palatopharyngis, Pseudonocardiaceae
FJ606836, Amycolatopsis halophila, Pseudonocardiaceae
HQ436534, Amycolatopsis salitolerans, Pseudonocardiaceae
AF223354, Amycolatopsis sacchari, Pseudonocardiaceae
AB588632, Micropolyspora internatus, Nocardiaceae
Z38007, Saccharomonospora viridis, type sp., Pseudonocardiaceae
Z38003, Saccharomonospora glauca, Pseudonocardiaceae
Z38018, Saccharomonospora cyanea, Pseudonocardiaceae
AJ306300, Saccharomonospora xinjiangensis, Pseudonocardiaceae
Z38017, Saccharomonospora azurea, Pseudonocardiaceae
DQ367416, Saccharomonospora saliphila, Pseudonocardiaceae
FJ812357, Saccharomonospora marina, Pseudonocardiaceae
AJ278497, Saccharomonospora halophila, Pseudonocardiaceae
 AF540959, Saccharomonospora paurometabolica, Pseudonocardiaceae
FJ444992, Prauserella salsuginis, Pseudonocardiaceae
FJ444995, Prauserella sediminis, Pseudonocardiaceae
FJ444993, Prauserella flava, Pseudonocardiaceae
AF435077, Prauserella alba, Pseudonocardiaceae
AF466190, Prauserella halophila, Pseudonocardiaceae
FJ444994, Prauserella aidingensis, Pseudonocardiaceae
AF051342, Prauserella rugosa, type sp., Pseudonocardiaceae
FJ444996, Prauserella marina, Pseudonocardiaceae
FM956091, Prauserella muralis, Pseudonocardiaceae
AJ000285, Amycolatopsis eurytherma, Pseudonocardiaceae
DQ886938, Amycolatopsis tucumanensis, Pseudonocardiaceae
AJ249135, Amycolatopsis methanolica, Pseudonocardiaceae
AF052390, Amycolatopsis thermoflava, Pseudonocardiaceae
HQ668524, Amycolatopsis ruanii, Pseudonocardiaceae
AY129774, Amycolatopsis thermophila, Pseudonocardiaceae
AF466095, Amycolatopsis viridis, Pseudonocardiaceae
AF466101, Amycolatopsis granulosa, Pseudonocardiaceae
HQ668525, Amycolatopsis thermalba, Pseudonocardiaceae
AB327253, Amycolatopsis helveola, Pseudonocardiaceae
DQ160215, Amycolatopsis taiwanensis, Pseudonocardiaceae
AB327254, Amycolatopsis pigmentata, Pseudonocardiaceae
X79183, Thermocrispum agreste, Pseudonocardiaceae
X79184, Thermocrispum municipale, type sp., Pseudonocardiaceae
GQ366705, Haloechinothrix alba, type sp., Pseudonocardiaceae
FJ526746, Yuhushiella deserti, type sp., Pseudonocardiaceae
EU503139, Sciscionella marina, type sp., Pseudonocardiaceae
EU267029, Saccharopolyspora hirsuta subsp. kobensis, Pseudonocardiaceae
EF143926, Saccharopolyspora jiangxiensis, Pseudonocardiaceae
EF693956, Saccharopolyspora antimicrobica, Pseudonocardiaceae
DQ381814, Saccharopolyspora hirsuta subsp. hirsuta, type sp., Pseudonocardiaceae
FN179275, Saccharopolyspora hordei, Pseudonocardiaceae
EF104116, Saccharopolyspora shandongensis, Pseudonocardiaceae
AF002818, Saccharopolyspora spinosa, Pseudonocardiaceae
AF127526, Saccharopolyspora thermophila, Pseudonocardiaceae
GQ381309, Saccharopolyspora phatthalungensis, Pseudonocardiaceae
AM992060, Saccharopolyspora rosea, Pseudonocardiaceae
AM420293, Saccharopolyspora erythraea, Pseudonocardiaceae
Y09571, Saccharopolyspora spinosporotrichia, Pseudonocardiaceae
AF002819, Saccharopolyspora taberi, Pseudonocardiaceae
EU005371, Saccharopolyspora gloriosae, Pseudonocardiaceae
X76962, Saccharopolyspora gregorii, Pseudonocardiaceae

Actinopolysporaceae (5)
GQ480940, Actinopolyspora alba, Actinopolysporaceae
GU479394, Actinopolyspora xinjiangensis, Actinopolysporaceae
GQ480939, Actinopolyspora erythraea, Actinopolysporaceae
DQ883812, Actinopolyspora mortivallis, Actinopolysporaceae
X54287, Actinopolyspora halophila, type sp., Actinopolysporaceae

JN010255, Saccharopolyspora rectivirgula, Pseudonocardiaceae

EF687715, Saccharopolyspora qijiaojingensis, Pseudonocardiaceae
AF154128, Saccharopolyspora flava, Pseudonocardiaceae
FJ214364, Saccharopolyspora tripterygii, Pseudonocardiaceae
DQ923129, Saccharopolyspora halophila, Pseudonocardiaceae
EF030715, Saccharopolyspora cebuensis, Pseudonocardiaceae
AB511316, Actinophytocola corallina, Pseudonocardiaceae
AB511315, Actinophytocola timorensis, Pseudonocardiaceae
AB535095, Actinophytocola burenkhanensis, Pseudonocardiaceae
EU420070, Actinophytocola oryzae, type sp., Pseudonocardiaceae
EU274339, Actinophytocola xinjiangensis, Pseudonocardiaceae
AB514520, Actinomycetospora cinnamomea, Pseudonocardiaceae
AB514519, Actinomycetospora chlora, Pseudonocardiaceae
AB514517, Actinomycetospora chibensis, Pseudonocardiaceae
AB514518, Actinomycetospora straminea, Pseudonocardiaceae
AB514514, Actinomycetospora succinea, Pseudonocardiaceae
AB514515, Actinomycetospora lutea, Pseudonocardiaceae
AM398646, Actinomycetospora chiangmaiensis, type sp., Pseudonocardiaceae
AB514513, Actinomycetospora corticicola, Pseudonocardiaceae
AB581530, Actinomycetospora rishiriensis, Pseudonocardiaceae
AB581531, Actinomycetospora iriomotensis, Pseudonocardiaceae
EU921261, Pseudonocardia acaciae, Pseudonocardiaceae
Y08536, Pseudonocardia asaccharolytica, Pseudonocardiaceae
AB514449, Pseudonocardia babensis, Pseudonocardiaceae
GU227146, Pseudonocardia artemisiae, Pseudonocardiaceae
EU722520, Pseudonocardia xinjiangensis, Pseudonocardiaceae
AJ252828, Pseudonocardia petroleophila, Pseudonocardiaceae
AJ252829, Pseudonocardia saturnea, Pseudonocardiaceae
FR733722, Pseudonocardia alaniniphila, Pseudonocardiaceae
AJ252822, Pseudonocardia yunnanensis, Pseudonocardiaceae
FR749916, Pseudonocardia aurantiaca, Pseudonocardiaceae
AB521672, Pseudonocardia khuvsgulensis, Pseudonocardiaceae
EF588218, Pseudonocardia thermophila, type sp., Pseudonocardiaceae
FJ805427, Pseudonocardia adelaidensis, Pseudonocardiaceae
AF325725, Pseudonocardia zijingensis, Pseudonocardiaceae
FJ817377, Pseudonocardia kunmingensis, Pseudonocardiaceae
AF454510, Pseudonocardia chloroethenivorans, Pseudonocardiaceae
AB521671, Pseudonocardia mongoliensis, Pseudonocardiaceae
DQ887489, Pseudonocardia endophytica, Pseudonocardiaceae
AJ252833, Pseudonocardia kongjuensis, Pseudonocardiaceae
AY500143, Pseudonocardia ammonioxydans, Pseudonocardiaceae
AJ252824, Pseudonocardia autotrophica, Pseudonocardiaceae
AJ252825, Pseudonocardia compacta, Pseudonocardiaceae
X55609, Pseudonocardia nitrificans, Pseudonocardiaceae
AJ252823, Pseudonocardia alni, Pseudonocardiaceae
EF114314, Pseudonocardia carboxydivorans, Pseudonocardiaceae
AJ576010, Pseudonocardia antarctica, Pseudonocardiaceae
GQ906587, Pseudonocardia tropica, Pseudonocardiaceae
FM863703, Pseudonocardia parietis, Pseudonocardiaceae
AB547126, Pseudonocardia spinosa, Pseudonocardiaceae
AJ249206, Pseudonocardia spinosispora, Pseudonocardiaceae
FJ805426, Pseudonocardia eucalypti, Pseudonocardiaceae
DQ344632, Pseudonocardia ailaonensis, Pseudonocardiaceae
DQ343154, Pseudonocardia oroxyli, Pseudonocardiaceae
AJ252827, Pseudonocardia halophobica, Pseudonocardiaceae
AJ556156, Pseudonocardia benzenivorans, Pseudonocardiaceae
AY340622, Pseudonocardia dioxanivorans, Pseudonocardiaceae
AJ249200, Pseudonocardia tetrahydrofuranoxydans, Pseudonocardiaceae
AJ252826, Pseudonocardia hydrocarbonoxydans, Pseudonocardiaceae
Y08537, Pseudonocardia sulfidoxydans, Pseudonocardiaceae
FM998036, Labedaea rhizosphaerae, type sp., Pseudonocardiaceae
AJ512463, Kibdelosporangium aridum subsp. largum, Pseudonocardiaceae
AJ512464, Kibdelosporangium philippinense, Pseudonocardiaceae
AJ311174, Kibdelosporangium aridum subsp. aridum, type sp., Pseudonocardiaceae
JN005785, Actinokineospora soli, Pseudonocardiaceae
D85497, Streptoalloteichus hindustanus, type sp., Pseudonocardiaceae
AB184722, Streptoalloteichus tenebrarius, Pseudonocardiaceae
X76966, Saccharothrix mutabilis subsp. mutabilis, Pseudonocardiaceae
X76965, Saccharothrix mutabilis subsp. capreolus, Pseudonocardiaceae
GQ917213, Saccharothrix variisporea, Pseudonocardiaceae
AF114807, Saccharothrix espanaensis, Pseudonocardiaceae
AF114814, Saccharothrix texasensis, Pseudonocardiaceae
AF114803, Saccharothrix australiensis, type sp., Pseudonocardiaceae
AB284261, Saccharothrix violaceirubra, Pseudonocardiaceae
AY054972, Saccharothrix algeriensis, Pseudonocardiaceae
AF114805, Saccharothrix coeruleofusca, Pseudonocardiaceae
AF114812, Saccharothrix syringae, Pseudonocardiaceae
AY135693, Saccharothrix xinjiangensis, Pseudonocardiaceae
AF114809, Saccharothrix longispora, Pseudonocardiaceae
AF328679, Actinosynnema mirum, type sp., Pseudonocardiaceae
AB303364, Actinosynnema pretiosum subsp. auranticum, Pseudonocardiaceae
AF114800, Actinosynnema pretiosum subsp. pretiosum, Pseudonocardiaceae
AF114804, Lechevalieria aerocolonigenes, type sp., Pseudonocardiaceae
DQ898283, Lechevalieria xinjiangensis, Pseudonocardiaceae
AJ512462, Allokutzneria albata, type sp., Pseudonocardiaceae
AF114808, Lechevalieria flava, Pseudonocardiaceae
AF328680, Lentzea albidocapillata, type sp., Pseudonocardiaceae
AJ242633, Lentzea violacea, Pseudonocardiaceae
AF183957, Lentzea flaviverrucosa, Pseudonocardiaceae
AB020029, Lentzea waywayandensis, Pseudonocardiaceae
AF174435, Lentzea californiensis, Pseudonocardiaceae
AB006176, Lentzea albida, Pseudonocardiaceae
DQ291145, Lentzea kentuckyensis, Pseudonocardiaceae
AY114175, Lechevalieria fradiae, Pseudonocardiaceae
EU551683, Lechevalieria roselyniae, Pseudonocardiaceae
EU551684, Lechevalieria atacamensis, Pseudonocardiaceae
AB447489, Actinokineospora cibodasensis, Pseudonocardiaceae
EU438907, Alloactinosynnema album, type sp., Pseudonocardiaceae
AF114797, Actinokineospora diospyrosa, Pseudonocardiaceae
AB473945, Actinokineospora cianjurensis, Pseudonocardiaceae
AB058396, Actinokineospora auranticolor, Pseudonocardiaceae
AB447488, Actinokineospora baliensis, Pseudonocardiaceae
AF114798, Actinokineospora globicatena, Pseudonocardiaceae
AB058394, Actinokineospora terrae, Pseudonocardiaceae
AB058395, Actinokineospora enzanensis, Pseudonocardiaceae
AF114799, Actinokineospora inagensis, Pseudonocardiaceae
AF114802, Actinokineospora riparia, type sp., Pseudonocardiaceae
GQ200601, Actinokineospora fastidiosa, Pseudonocardiaceae
AB020031, Umezawaea tangerina, type sp., Pseudonocardiaceae
EF543522, Kutzneria albida, Pseudonocardiaceae
AF114801, Kutzneria kofuensis, Pseudonocardiaceae
U58530, Kutzneria viridogrisea, type sp., Pseudonocardiaceae
AB006178, Actinoalloteichus cyanogriseus, type sp., Pseudonocardiaceae
AY426714, Actinoalloteichus spitiensis, Pseudonocardiaceae
DQ144222, Actinoalloteichus hymeniacidonis, Pseudonocardiaceae
GQ926935, Actinoalloteichus nanshanensis, Pseudonocardiaceae
DQ093349, Goodfellowiella coeruleoviolacea, type sp., Pseudonocardiaceae
AF114806, Crossiella cryophila, type sp., Pseudonocardiaceae
AF245017, Crossiella equi, Pseudonocardiaceae

Micromonosporaceae (136)
AB036996, Actinoplanes consettensis, Micromonosporaceae
AB037004, Actinoplanes humidus, Micromonosporaceae
FR733685, Actinoplanes friuliensis, Micromonosporaceae
AB037000, Actinoplanes digitatis, Micromonosporaceae
AJ277568, Actinoplanes durhamensis, Micromonosporaceae
X93188, Actinoplanes regularis, Micromonosporaceae
AJ277573, Actinoplanes palleronii, Micromonosporaceae
AB047494, Actinoplanes octamycinicus, Micromonosporaceae
AB047495, Actinoplanes ianthinogenes, Micromonosporaceae
AJ277574, Actinoplanes utahensis, Micromonosporaceae
U58526, Actinoplanes auranticolor, Micromonosporaceae
EU531458, Actinoplanes sichuanensis, Micromonosporaceae
AB037006, Actinoplanes lobatus, Micromonosporaceae
AB036995, Actinoplanes campanulatus, Micromonosporaceae
AB013495, Actinoplanes capillaceus, Micromonosporaceae
AB036997, Actinoplanes cyaneus, Micromonosporaceae
AJ865471, Actinoplanes liguriensis, Micromonosporaceae
AB037005, Actinoplanes italicus, Micromonosporaceae
AM400230, Actinoplanes couchii, Micromonosporaceae
AB037010, Actinoplanes rectilineatus, Micromonosporaceae
AB036999, Actinoplanes derwentensis, Micromonosporaceae
EU531457, Actinoplanes xinjiangensis, Micromonosporaceae
AJ277572, Actinoplanes missouriensis, Micromonosporaceae
U58525, Actinoplanes philippinensis, type sp., Micromonosporaceae
AB047513, Actinoplanes teichomyceticus, Micromonosporaceae
X92594, Micromonospora chalcea, type sp., Micromonosporaceae
AB196712, Micromonospora marina , Micromonosporaceae
X92604, Micromonospora aurantiaca, Micromonosporaceae
X92601, Micromonospora halophytica, Micromonosporaceae
X92611, Micromonospora purpureochromogenes, Micromonosporaceae
AB241455, Micromonospora coxensis, Micromonosporaceae
GU459068, Micromonospora humi, Micromonosporaceae
AB241454, Micromonospora chokoriensis, Micromonosporaceae
AJ783996, Micromonospora lupini, Micromonosporaceae
AJ626950, Micromonospora mirobrigensis, Micromonosporaceae
AB193565, Micromonospora siamensis, Micromonosporaceae
AY561829, Micromonospora rifamycinica, Micromonosporaceae
AF152109, Micromonospora matsumotoense, Micromonosporaceae
AJ783993, Micromonospora saelicesensis, Micromonosporaceae
AB196716, Micromonospora krabiensis, Micromonosporaceae
X92599, Micromonospora carbonacea, Micromonosporaceae
AM232832, Planosporangium flavigriseum, type sp., Micromonosporaceae
GU126491, Planosporangium mesophilum, Micromonosporaceae
X93185, Actinoplanes brasiliensis, Micromonosporaceae
HQ157185, Actinoplanes abujensis, Micromonosporaceae
AJ277569, Actinoplanes ferrugineus, Micromonosporaceae
AB468944, Actinoplanes tereljensis, Micromonosporaceae
AB468943, Actinoplanes toevensis, Micromonosporaceae
AB048219, Actinoplanes globisporus, Micromonosporaceae
AJ277565, Actinoplanes deccanensis, Micromonosporaceae
AB236956, Krasilnikovia cinnamomea, type sp., Micromonosporaceae
AB302183, Pseudosporangium ferrugineum, type sp., Micromonosporaceae
X93202, Couchioplanes caeruleus subsp. azureus, Micromonosporaceae
D85479, Couchioplanes caeruleus subsp. caeruleus, type sp., Micromonosporaceae
AB490769, Phytohabitans suffuscus, type sp., Micromonosporaceae
AB112081, Asanoa iriomotensis, Micromonosporaceae
AJ294715, Asanoa ishikariensis, Micromonosporaceae
 AF152108, Asanoa ferruginea, type sp., Micromonosporaceae
FJ155992, Asanoa hainanensis, Micromonosporaceae
EU560726, Jishengella endophytica, type sp., Micromonosporaceae
AB588634, Catenuloplanes castaneus, Micromonosporaceae
X93201, Catenuloplanes japonicus, type sp., Micromonosporaceae
AJ294716, Catenuloplanes atrovinosus, Micromonosporaceae
AJ294717, Catenuloplanes indicus, Micromonosporaceae
AB588635, Catenuloplanes niger, Micromonosporaceae
AB024701, Catenuloplanes crispus, Micromonosporaceae
FJ715941, Catenuloplanes nepalensis, Micromonosporaceae
EF191199, Verrucosispora lutea, Micromonosporaceae
EU870859, Verrucosispora sediminis, Micromonosporaceae
Y15523, Verrucosispora gifhornensis, type sp., Micromonosporaceae
AY528866, Verrucosispora maris, Micromonosporaceae
AB200231, Catellatospora chokoriensis, Micromonosporaceae
AF152107, Catellatospora methionotrophica, Micromonosporaceae
AF152106, Catellatospora citrea, type sp., Micromonosporaceae
AB200232, Catellatospora coxensis, Micromonosporaceae
AF171700, Catelliglobosispora koreensis, Micromonosporaceae
FN386736, Allocatelliglobosispora scoriae, type sp., Micromonosporaceae
AB200233, Catellatospora bangladeshensis, Micromonosporaceae
AF152110, Hamadaea tsunoensis, Micromonosporaceae
AB089241, Longispora albida, type sp., Micromonosporaceae
AB489859, Longispora fulva, Micromonosporaceae
X92607, Micromonospora echinospora, Micromonosporaceae
X92620, Micromonospora fulviviridis, Micromonosporaceae
X92629, Micromonospora inyonensis, Micromonosporaceae
X92624, Micromonospora sagamiensis, Micromonosporaceae
X92610, Micromonospora inositola, Micromonosporaceae
X92618, Micromonospora echinaurantiaca, Micromonosporaceae
X92613, Micromonospora olivasterospora, Micromonosporaceae
X92623, Micromonospora viridifaciens, Micromonosporaceae
X92608, Micromonospora pallida, Micromonosporaceae
X92609, Micromonospora nigra, Micromonosporaceae
X92598, Micromonospora coerulea, Micromonosporaceae
AJ784008, Micromonospora coriariae, Micromonosporaceae
X92625, Micromonospora echinofusca, Micromonosporaceae
X92603, Micromonospora peucetia, Micromonosporaceae
X92617, Micromonospora citrea, Micromonosporaceae
X92628, Micromonospora chersina, Micromonosporaceae
AJ560635, Micromonospora endolithica, Micromonosporaceae
AB159779, Micromonospora auratinigra, Micromonosporaceae
X92631, Micromonospora rosaria, Micromonosporaceae
EU196562, Micromonospora tulbaghiae, Micromonosporaceae
FJ261956, Micromonospora rhizosphaerae, Micromonosporaceae
AB196710, Micromonospora chaiyaphumensis, Micromonosporaceae
GU002071, Micromonospora yangpuensis, Micromonosporaceae
AB107231, Micromonospora eburnea, Micromonosporaceae
AB193559, Micromonospora narathiwatensis, Micromonosporaceae
AB275607, Micromonospora pattaloongensis, Micromonosporaceae
AM944497, Micromonospora pisi, Micromonosporaceae
AY040619, Salinispora arenicola, type sp., Micromonosporaceae
AY040617, Salinispora tropica, Micromonosporaceae
AB454379, Actinaurispora siamensis, type sp., Micromonosporaceae
AB223089, Polymorphospora rubra, type sp., Micromonosporaceae
FJ214343, Plantactinospora mayteni, type sp., Micromonosporaceae
D63912, Spirilliplanes yamanashiensis, type sp., Micromonosporaceae
X93192, Dactylosporangium fulvum, Micromonosporaceae
X93194, Dactylosporangium roseum, Micromonosporaceae
X92630, Dactylosporangium thailandense, Micromonosporaceae
FM882231, Dactylosporangium darangshiense, Micromonosporaceae
FJ973605, Dactylosporangium luridum, Micromonosporaceae
FJ973604, Dactylosporangium luteum, Micromonosporaceae
X93191, Dactylosporangium aurantiacum, type sp., Micromonosporaceae
AB495209, Dactylosporangium maewongense, Micromonosporaceae
X93193, Dactylosporangium matsuzakiense, Micromonosporaceae
X93196, Dactylosporangium vinaceum, Micromonosporaceae
FJ973607, Dactylosporangium salmoneum, Micromonosporaceae
AB454508, Dactylosporangium tropicum, Micromonosporaceae
AB236959, Luedemannella flava, Micromonosporaceae
AB236957, Luedemannella helvata, type sp., Micromonosporaceae
FM208262, Rugosimonospora africana, Micromonosporaceae
FM208261, Rugosimonospora acidiphila, type sp., Micromonosporaceae
X93189, Pilimelia anulata, Micromonosporaceae
X93190, Pilimelia terevasa, type sp., Micromonosporaceae
AB548688, Pilimelia columellifera subsp. columellifera, Micromonosporaceae
AB006169, Virgisporangium aurantiacum, Micromonosporaceae
AB006167, Virgisporangium ochraceum, type sp., Micromonosporaceae
AB548616, Virgisporangium aliadipatigenens, Micromonosporaceae

Glycomycetaceae (13)
AY462041, Glycomyces lechevalierae, Glycomycetaceae
AJ293748, Glycomyces rutgersensis, Glycomycetaceae
AY462044, Glycomyces algeriensis, Glycomycetaceae
EU200681, Glycomyces endophyticus, Glycomycetaceae
D85483, Glycomyces harbinensis, type sp., Glycomycetaceae
DQ460469, Glycomyces sambucus, Glycomycetaceae
EU200682, Glycomyces scopariae, Glycomycetaceae
EU814511, Glycomyces mayteni, Glycomycetaceae
AY462042, Glycomyces arizonensis, Glycomycetaceae
D85482, Glycomyces tenuis, Glycomycetaceae
EU660053, Haloglycomyces albus, type sp., Glycomycetaceae
AY650268, Stackebrandtia nassauensis, type sp., Glycomycetaceae
DQ985165, Stackebrandtia albiflava, Glycomycetaceae

GU367156, Phytomonospora endophytica, type sp., Micromonosporaceae

AB107233, Actinocatenispora thailandica, type sp., Micromonosporaceae
AB263096, Actinocatenispora sera, Micromonosporaceae
AM980986, Actinocatenispora rupis, Micromonosporaceae

Jiangellaceae (5)
FN645214, Jiangella muralis, Jiangellaceae
FJ157186, Jiangella alba, Jiangellaceae
AM422451, Jiangella alkaliphila, Jiangellaceae
AY631071, Jiangella gansuensis, type sp., Jiangellaceae
FJ969846, Haloactinopolyspora alba, type sp., Jiangellaceae

Thermomonosporaceae (71)
AJ293701, Actinocorallia aurantiaca, Thermomonosporaceae
U49007, Actinocorallia libanotica, Thermomonosporaceae
D85473, Actinocorallia herbida, type sp., Thermomonosporaceae
AB006177, Actinocorallia aurea, Thermomonosporaceae
AJ293704, Actinocorallia glomerata, Thermomonosporaceae
AJ293707, Actinocorallia longicatena, Thermomonosporaceae
 AY966427, Actinocorallia cavernae, Thermomonosporaceae
AF163123, Spirillospora rubra, Thermomonosporaceae
DQ285420, Actinomadura rudentiformis, Thermomonosporaceae
AJ420137, Actinomadura fulvescens, Thermomonosporaceae
D85498, Spirillospora albida, type sp., Thermomonosporaceae
AJ293702, Actinomadura fibrosa, Thermomonosporaceae
EU637009, Actinomadura keratinilytica, Thermomonosporaceae
EF116925, Actinomadura miaoliensis, Thermomonosporaceae
EU637008, Actinomadura rubrobrunea, Thermomonosporaceae
D86943, Actinomadura viridilutea, Thermomonosporaceae
AF163118, Actinomadura oligospora, Thermomonosporaceae
FM210337, Actinomadura rupiterrae, Thermomonosporaceae
X97890, Actinomadura kijaniata, Thermomonosporaceae
AJ420134, Actinomadura namibiensis, Thermomonosporaceae
AJ293705, Actinomadura hibisca, Thermomonosporaceae
AY035999, Actinomadura nitritigenes, Thermomonosporaceae
AJ293703, Actinomadura formosensis, Thermomonosporaceae
U49000, Actinomadura atramentaria, Thermomonosporaceae
FJ157185, Actinomadura flavalba, Thermomonosporaceae
AY568292, Actinomadura napierensis, Thermomonosporaceae
AY273787, Actinomadura meyerae, Thermomonosporaceae
HQ157187, Actinomadura geliboluensis, Thermomonosporaceae
U49008, Actinomadura luteofluorescens, Thermomonosporaceae
U49011, Actinomadura verrucosospora, Thermomonosporaceae
U49010, Actinomadura rugatobispora, Thermomonosporaceae
U49009, Actinomadura macra, Thermomonosporaceae
U49002, Actinomadura coerulea, Thermomonosporaceae
AJ293710, Actinomadura pelletieri, Thermomonosporaceae
FN646663, Actinomadura meridiana, Thermomonosporaceae
U49003, Actinomadura rifamycini, Thermomonosporaceae
AB557596, Actinomadura apis, Thermomonosporaceae
AF134067, Actinomadura cremea subsp. cremea, Thermomonosporaceae
JF272484, Actinomadura sediminis, Thermomonosporaceae
AB184612, Actinomadura glauciflava, Thermomonosporaceae
AJ420139, Actinomadura citrea, Thermomonosporaceae
AF277195, Actinomadura mexicana, Thermomonosporaceae
X97889, Actinomadura madurae, type sp., Thermomonosporaceae
AY035998, Actinomadura latina, Thermomonosporaceae
AB331652, Actinomadura bangladeshensis, Thermomonosporaceae
AB331730, Actinomadura chokoriensis, Thermomonosporaceae
AF134070, Actinomadura vinacea, Thermomonosporaceae
AJ420141, Actinomadura viridis, Thermomonosporaceae
AF163122, Actinomadura yumaensis, Thermomonosporaceae
AB264086, Actinomadura chibensis, Thermomonosporaceae
AF154127, Actinomadura catellatispora, Thermomonosporaceae
AJ293706, Actinomadura livida, Thermomonosporaceae
DQ076484, Actinomadura hallensis, Thermomonosporaceae
FM957483, Actinomadura sputi, Thermomonosporaceae
AJ293713, Actinomadura umbrina, Thermomonosporaceae
D86945, Thermomonospora curvata, type sp., Thermomonosporaceae
AJ420135, Actinomadura echinospora, Thermomonosporaceae
AB364579, Actinoallomurus coprocola, Thermomonosporaceae
EU420071, Actinoallomurus oryzae, Thermomonosporaceae
AB364586, Actinoallomurus iriomotensis, Thermomonosporaceae
AB578855, Actinoallomurus radicium, Thermomonosporaceae
EU429322, Actinoallomurus acaciae , Thermomonosporaceae
AB364589, Actinoallomurus caesius, Thermomonosporaceae
AB364583, Actinoallomurus amamiensis, Thermomonosporaceae
AB364582, Actinoallomurus fulvus, Thermomonosporaceae
AB364584, Actinoallomurus yoronensis, Thermomonosporaceae
AB364585, Actinoallomurus luridus, Thermomonosporaceae
AB364588, Actinoallomurus purpureus, Thermomonosporaceae
AF163120, Actinoallomurus spadix, type sp., Thermomonosporaceae
FM210339, Actinomadura scrupuli, Thermomonosporaceae
DQ985164, Actinomadura alba, Thermomonosporaceae

Nocardiopsaceae (50)
AY028325, Nocardiopsis exhalans, Nocardiopsaceae
AY336503, Nocardiopsis valliformis, Nocardiopsaceae
AY336513, Nocardiopsis ganjiahuensis, Nocardiopsaceae
AJ420769, Nocardiopsis metallicus, Nocardiopsaceae
X97884, Nocardiopsis prasina, Nocardiopsaceae
AY230848, Nocardiopsis alkaliphila, Nocardiopsaceae
X97887, Nocardiopsis listeri, Nocardiopsaceae
X97883, Nocardiopsis alba, Nocardiopsaceae
AF105971, Nocardiopsis tropica, Nocardiopsaceae
AY036001, Nocardiopsis umidischolae, Nocardiopsaceae
AJ539401, Nocardiopsis aegyptia, Nocardiopsaceae
X97886, Nocardiopsis dassonvillei subsp. dassonvillei, type sp., Nocardiopsaceae
Y13593, Nocardiopsis synnemataformans, Nocardiopsaceae
X97882, Nocardiopsis dassonvillei subsp. albirubida, Nocardiopsaceae
AJ290448, Nocardiopsis halotolerans, Nocardiopsaceae
EU410477, Nocardiopsis arvandica, Nocardiopsaceae
EU410476, Nocardiopsis sinuspersici, Nocardiopsaceae
EF597511, Nocardiopsis quinghaiensis, Nocardiopsaceae
X97888, Nocardiopsis lucentensis, Nocardiopsaceae
AF195412, Nocardiopsis kunsanensis, Nocardiopsaceae
EU583726, Nocardiopsis litoralis, Nocardiopsaceae
AF251709, Nocardiopsis xinjiangensis, Nocardiopsaceae
AY373031, Nocardiopsis salina, Nocardiopsaceae
AB491226, Nocardiopsis nikkonensis, Nocardiopsaceae
GU997639, Nocardiopsis flavescens, Nocardiopsaceae
AY619716, Nocardiopsis baichengensis, Nocardiopsaceae
AJ421018, Nocardiopsis halophila, Nocardiopsaceae
AY619715, Nocardiopsis chromatogenes, Nocardiopsaceae
AY619714, Nocardiopsis rhodophaea, Nocardiopsaceae
AY619713, Nocardiopsis rosea, Nocardiopsaceae
AY619712, Nocardiopsis gilva, Nocardiopsaceae
JN006759, Nocardiopsis coralliicola, Nocardiopsaceae
FM253114, Nocardiopsis potens, Nocardiopsaceae
AF360734, Nocardiopsis composta, Nocardiopsaceae
AF105972, Nocardiopsis trehalosi, Nocardiopsaceae
AF462347, Streptomonospora alba, Nocardiopsaceae
EU442553, Streptomonospora flavalba, Nocardiopsaceae
EU442551, Streptomonospora amylolytica, Nocardiopsaceae
AF178988, Streptomonospora salina, type sp., Nocardiopsaceae
EF095149, Nocardiopsis arabia, Nocardiopsaceae
EF423989, Streptomonospora halophila, Nocardiopsaceae
DQ923130, Haloactinospora alba, type sp., Nocardiopsaceae
GU253338, Salinactinospora qingdaonensis, type sp., Nocardiopsaceae
EU698029, Marinactinospora thermotolerans, type sp., Nocardiopsaceae
FN393755, Murinocardiopsis flavida, type sp., Nocardiopsaceae
GU112453, Spinactinospora alkalitolerans, type sp., Nocardiopsaceae
AJ298058, Thermobifida cellulosilytica, Nocardiopsaceae
 AF028245, Thermobifida fusca, Nocardiopsaceae
AF002260, Thermobifida alba, type sp., Nocardiopsaceae
EU250489, Thermobifida halotolerans, Nocardiopsaceae

Streptosporangiaceae (83)
AB039961, Nonomuraea roseoviolacea subsp. carminata, Streptosporangiaceae
AB039959, Nonomuraea roseoviolacea subsp. roseoviolacea, Streptosporangiaceae
GU002054, Nonomuraea maritima, Streptosporangiaceae
FJ418910, Nonomuraea jiangxiensis, Streptosporangiaceae
FJ157184, Nonomuraea antimicrobica, Streptosporangiaceae
AF277200, Nonomuraea rubra, Streptosporangiaceae
U48843, Nonomuraea angiospora, Streptosporangiaceae
U48983, Nonomuraea spiralis, Streptosporangiaceae
U48975, Nonomuraea helvata, Streptosporangiaceae
U48845, Nonomuraea ferruginea, Streptosporangiaceae
U48977, Nonomuraea polychroma, Streptosporangiaceae
AB274967, Nonomuraea coxensis, Streptosporangiaceae
U48844, Nonomuraea fastidiosa, Streptosporangiaceae
AB274966, Nonomuraea bangladeshensis, Streptosporangiaceae
FJ261959, Nonomuraea wenchangensis, Streptosporangiaceae
AJ746362, Nonomuraea kuesteri, Streptosporangiaceae
AB290014, Nonomuraea maheshkhaliensis, Streptosporangiaceae
AB018787, Nonomuraea longicatena, Streptosporangiaceae
GU367158, Nonomuraea endophytica, Streptosporangiaceae
X97892, Nonomuraea salmonea, Streptosporangiaceae
DQ285421, Nonomuraea candida, Streptosporangiaceae
AF277201, Nonomuraea turkmeniaca, Streptosporangiaceae
AB018046, Microbispora corallina, Streptosporangiaceae
FJ199993, Microbispora siamensis, Streptosporangiaceae
D86936, Microbispora rosea subsp. rosea, type sp., Streptosporangiaceae
U48984, Microbispora rosea subsp. aerata, Streptosporangiaceae
AF002266, Microbispora mesophila, Streptosporangiaceae
AB370244, Planotetraspora thailandica, Streptosporangiaceae
AB112082, Planotetraspora silvatica, Streptosporangiaceae
D85496, Planotetraspora mira, type sp., Streptosporangiaceae
FJ426333, Planotetraspora kaengkrachanensis, Streptosporangiaceae
AB025318, Acrocarpospora macrocephala, Streptosporangiaceae
AB006174, Acrocarpospora pleiomorpha, type sp., Streptosporangiaceae
AB188150, Acrocarpospora corrugata, Streptosporangiaceae
D85485, Herbidospora cretacea, type sp., Streptosporangiaceae
FJ214356, Herbidospora osyris, Streptosporangiaceae
AY749433, Herbidospora daliensis, Streptosporangiaceae
DQ246623, Herbidospora yilanensis, Streptosporangiaceae
FJ199995, Herbidospora sakaeratensis, Streptosporangiaceae
U48973, Microtetraspora fusca, Streptosporangiaceae
U48976, Microtetraspora niveoalba, Streptosporangiaceae
X97891, Microtetraspora glauca, type sp., Streptosporangiaceae
AB062383, Microtetraspora malaysiensis, Streptosporangiaceae
D85491, Nonomuraea pusilla, type sp., Streptosporangiaceae
X89953, Sphaerisporangium viridialbum, Streptosporangiaceae
AB208714, Sphaerisporangium melleum, Streptosporangiaceae
HM043727, Sphaerisporangium siamense, Streptosporangiaceae
HM037365, Sphaerisporangium krabiense, Streptosporangiaceae
EU499344, Sphaerisporangium album, Streptosporangiaceae
EU499338, Sphaerisporangium flaviroseum, Streptosporangiaceae
AB208718, Sphaerisporangium rubeum, Streptosporangiaceae
X89939, Sphaerisporangium cinnabarinum, Streptosporangiaceae
AB028653, Planomonospora parontospora subsp. antibiotica, Streptosporangiaceae
AB062382, Planomonospora sphaerica, Streptosporangiaceae
D85495, Planomonospora parontospora subsp. parontospora, type sp., Streptosporangiaceae
AB062381, Planomonospora alba, Streptosporangiaceae
D85494, Planobispora longispora, type sp., Streptosporangiaceae
AB028654, Planobispora rosea, Streptosporangiaceae
AB028655, Planomonospora venezuelensis, Streptosporangiaceae
JF742631, Nonomuraea soli, Streptosporangiaceae
AY039253, Thermopolyspora flexuosa, type sp., Streptosporangiaceae
AF191735, Streptosporangium purpuratum, Streptosporangiaceae
AF191733, Streptosporangium yunnanense, Streptosporangiaceae
U48999, Streptosporangium vulgare, Streptosporangiaceae
X89944, Streptosporangium longisporum, Streptosporangiaceae
AB537172, Streptosporangium amethystogenes subsp. fukuiense, Streptosporangiaceae
X89935, Streptosporangium amethystogenes subsp. amethystogenes, Streptosporangiaceae
AB594818, Streptosporangium oxazolinicum, Streptosporangiaceae
X89934, Streptosporangium album, Streptosporangiaceae
X89947, Streptosporangium roseum, type sp., Streptosporangiaceae
AY996844, Streptosporangium canum, Streptosporangiaceae
AF191734, Streptosporangium subroseum, Streptosporangiaceae
X89945, Streptosporangium nondiastaticum, Streptosporangiaceae
X89946, Streptosporangium pseudovulgare, Streptosporangiaceae
U48992, Streptosporangium fragile, Streptosporangiaceae
X89938, Streptosporangium carneum, Streptosporangiaceae
U48997, Streptosporangium violaceochromogenes, Streptosporangiaceae
U48842, Nonomuraea africana, Streptosporangiaceae
U48979, Nonomuraea recticatena, Streptosporangiaceae
AJ278221, Nonomuraea roseola, Streptosporangiaceae
AB006156, Nonomuraea dietziae, Streptosporangiaceae
FN356742, Nonomuraea rosea, Streptosporangiaceae
HM755723, Nonomuraea rhizophila, Streptosporangiaceae

EU438912, Sinosporangium album, type sp., Unclassified Suborder Streptosporangineae

AF116558, Thermomonospora chromogena, Thermomonosporaceae
U58523, Thermobispora bispora, type sp., Pseudonocardiaceae
EF601829, Actinopolymorpha rutila, Nocardioidaceae
EU438909, Actinopolymorpha cephalotaxi, Nocardioidaceae
AF237815, Actinopolymorpha singaporensis, type sp., Nocardioidaceae
FJ805429, Actinopolymorpha pittospori, Nocardioidaceae
EU706350, Actinopolymorpha alba, Nocardioidaceae
AB535715, Thermasporomyces composti, type sp., Nocardioidaceae
FJ805430, Flindersiella endophytica, type sp., Nocardioidaceae

Nocardioidaceae (71)
AB245396, Nocardioides ginsengisoli, Nocardioidaceae
AF005009, Pimelobacter simplex, type sp., Nocardioidaceae
AF005024, Nocardioides nitrophenolicus, Nocardioidaceae
AB087721, Nocardioides aromaticivorans, Nocardioidaceae
DQ218275, Nocardioides kongjuensis, Nocardioidaceae
FJ423551, Nocardioides caeni, Nocardioidaceae
FM997998, Nocardioides ultimimeridianus, Nocardioidaceae
FM998000, Nocardioides maradonensis, Nocardioidaceae
EF623863, Nocardioides humi, Nocardioidaceae
EF466107, Nocardioides tritolerans, Nocardioidaceae
EF466113, Nocardioides agariphilus, Nocardioidaceae
EF466123, Nocardioides islandensis, Nocardioidaceae
AF004988, Nocardioides albus, type sp., Nocardioidaceae
 AF005007, Nocardioides luteus, Nocardioidaceae
DQ401093, Nocardioides marinus, Nocardioidaceae
AB271053, Nocardioides panacihumi, Nocardioidaceae
FJ423762, Nocardioides terrae, Nocardioidaceae
DQ786794, Nocardioides insulae, Nocardioidaceae
AY423719, Nocardioides aestuarii, Nocardioidaceae
AB273624, Nocardioides exalbidus, Nocardioidaceae
AM295258, Nocardioides hwasunensis, Nocardioidaceae
AY423718, Nocardioides ganghwensis, Nocardioidaceae
AJ698724, Nocardioides oleivorans, Nocardioidaceae
DQ411542, Nocardioides furvisabuli, Nocardioidaceae
GU784866, Nocardioides alpinus, Nocardioidaceae
EF466110, Nocardioides sediminis, Nocardioidaceae
EF363712, Nocardioides terrigena, Nocardioidaceae
AF529063, Nocardioides aquiterrae, Nocardioidaceae
U61298, Nocardioides pyridinolyticus, Nocardioidaceae
FJ750845, Nocardioides caricicola, Nocardioidaceae
EF466121, Nocardioides dilutus, Nocardioidaceae
EF466122, Nocardioides halotolerans, Nocardioidaceae
EF555584, Nocardioides hankookensis, Nocardioidaceae
EF626689, Nocardioides fonticola, Nocardioidaceae
AF005008, Nocardioides plantarum, Nocardioidaceae
GQ339904, Nocardioides ginsengagri, Nocardioidaceae
FJ666101, Nocardioides panacisoli, Nocardioidaceae
EF466114, Nocardioides bigeumensis, Nocardioidaceae
DQ121389, Nocardioides lentus, Nocardioidaceae
X94145, Nocardioides aquaticus, Nocardioidaceae
AM981198, Nocardioides hungaricus, Nocardioidaceae
AY835924, Nocardioides kribbensis, Nocardioidaceae
EU143365, Nocardioides basaltis, Nocardioidaceae
DQ401092, Nocardioides salarius, Nocardioidaceae
EF633986, Nocardioides dokdonensis, Nocardioidaceae
AM422448, Nocardioides marinisabuli, Nocardioidaceae
AM398438, Nocardioides daphniae, Nocardioidaceae
AM295338, Marmoricola aequoreus, Nocardioidaceae
FN386723, Marmoricola korecus, Nocardioidaceae
Y18629, Marmoricola aurantiacus, type sp., Nocardioidaceae
FN386750, Marmoricola scoriae, Nocardioidaceae
AB544079, Nocardioides iriomotensis, Nocardioidaceae
EF466117, Nocardioides mesophilus, Nocardioidaceae
EF466120, Marmoricola bigeumensis, Nocardioidaceae
GQ339901, Nocardioides ginsengisegetis, Nocardioidaceae
EF466115, Nocardioides koreensis, Nocardioidaceae
AY633969, Nocardioides alkalitolerans, Nocardioidaceae
AF005006, Nocardioides jensenii, Nocardioidaceae
FJ842646, Nocardioides daedukensis, Nocardioidaceae
AY928902, Nocardioides dubius, Nocardioidaceae
JF937066, Nocardioides daejeonensis, Nocardioidaceae
AB245394, Aeromicrobium ginsengisoli, Nocardioidaceae
AB245387, Aeromicrobium panaciterrae, Nocardioidaceae
AY166703, Aeromicrobium marinum, Nocardioidaceae
AF005022, Aeromicrobium fastidiosum, Nocardioidaceae
AY822044, Aeromicrobium alkaliterrae, Nocardioidaceae
EF133690, Aeromicrobium flavum, Nocardioidaceae
DQ411541, Aeromicrobium tamlense, Nocardioidaceae
AF005021, Aeromicrobium erythreum, type sp., Nocardioidaceae
AM778683, Aeromicrobium ponti, Nocardioidaceae
FJ042789, Aeromicrobium halocynthiae, Nocardioidaceae

Propionibacteriaceae (44)
AJ704570, Propionibacterium acidipropionici, Propionibacteriaceae
AF234623, Propionibacterium microaerophilum, Propionibacteriaceae
AJ704571, Propionibacterium jensenii, Propionibacteriaceae
AJ704572, Propionibacterium thoenii, Propionibacteriaceae
AJ003057, Propionibacterium granulosum, Propionibacteriaceae
AJ003055, Propionibacterium avidum, Propionibacteriaceae
AJ003058, Propionibacterium propionicum, Propionibacteriaceae
AB042288, Propionibacterium acnes, Propionibacteriaceae
EU979537, Propionibacterium acidifaciens, Propionibacteriaceae
AF225962, Propionibacterium australiense, Propionibacteriaceae
D82046, Propionibacterium cyclohexanicum, Propionibacteriaceae
Y10819, Propionibacterium freudenreichii subsp. shermanii, Propionibacteriaceae
X53217, Propionibacterium freudenreichii subsp. freudenreichii, type sp., Propionibacteriaceae
AF038504, Tessaracoccus bendigoensis, type sp., Propionibacteriaceae
AM393882, Tessaracoccus flavescens, Propionibacteriaceae
FM178840, Tessaracoccus lubricantis, Propionibacteriaceae
DQ196625, Brooklawnia cerclae, type sp., Propionibacteriaceae
AJ003056, Propionimicrobium lymphophilum, type sp., Propionibacteriaceae
GU111566, Tessaracoccus oleiagri, Propionibacteriaceae
D85487, Luteococcus japonicus, type sp., Propionibacteriaceae
AJ416758, Luteococcus sanguinis, Propionibacteriaceae
AJ132334, Luteococcus peritonei, Propionibacteriaceae
DQ830982, Aestuariimicrobium kwangyangense, type sp., Propionibacteriaceae
Z78206, Friedmanniella antarctica, type sp., Propionibacteriaceae
AF062535, Friedmanniella spumicola, Propionibacteriaceae
AB445456, Friedmanniella sagamiharensis, Propionibacteriaceae
AB445455, Friedmanniella okinawensis, Propionibacteriaceae
AF084529, Friedmanniella capsulata, Propionibacteriaceae
AJ132943, Friedmanniella lacustris, Propionibacteriaceae
AB445453, Friedmanniella luteola, Propionibacteriaceae
AB445454, Friedmanniella lucida, Propionibacteriaceae
EF601828, Microlunatus aurantiacus, Propionibacteriaceae
Z78207, Microlunatus phosphovorus, type sp., Propionibacteriaceae
AB245389, Microlunatus ginsengisoli, Propionibacteriaceae
FN556016, Microlunatus parietis, Propionibacteriaceae
FJ807672, Microlunatus soli, Propionibacteriaceae
AB271051, Microlunatus panaciterrae, Propionibacteriaceae
FN552748, Auraticoccus monumenti, type sp., Propionibacteriaceae
FR733712, Propionicimonas paludicola, type sp., Propionibacteriaceae
DQ176646, Propionicicella superfundia, type sp., Propionibacteriaceae
AB012607, Micropruina glycogenica, type sp., Propionibacteriaceae
AB298731, Propioniciclava tarda, type sp., Propionibacteriaceae
AY566575, Granulicoccus phenolivorans, type sp., Propionibacteriaceae
AF227165, Propioniferax innocua, type sp., Propionibacteriaceae

EF126967, Kribbella aluminosa, Nocardioidaceae

AY995147, Kribbella swartbergensis, Nocardioidaceae
AY253866, Kribbella jejuensis, Nocardioidaceae
AY253862, Kribbella solani, Nocardioidaceae
EF472955, Kribbella hippodromi, Nocardioidaceae
AM778575, Kribbella catacumbae, Nocardioidaceae
AY995146, Kribbella karoonensis, Nocardioidaceae
AY253864, Kribbella sandramycini, Nocardioidaceae
AY082061, Kribbella yunnanensis, Nocardioidaceae
 AY082063, Kribbella antibiotica, Nocardioidaceae
AB245391, Kribbella ginsengisoli, Nocardioidaceae
Y09159, Kribbella koreensis, Nocardioidaceae
AM778577, Kribbella sancticallisti, Nocardioidaceae
HM368615, Kribbella amoyensis, Nocardioidaceae
AY253863, Kribbella flavida, type sp., Nocardioidaceae
AY082062, Kribbella alba, Nocardioidaceae
AJ811962, Kribbella lupini, Nocardioidaceae
CP000481, Acidothermus cellulolyticus, type sp., Acidothermaceae
AB478418, Euzebya tangerina, type sp., Euzebyaceae
EF422408, Nitriliruptor alkaliphilus, type sp., Nitriliruptoraceae

Acidimicrobiaceae (4)
U75647, Acidimicrobium ferrooxidans, type sp., Acidimicrobiaceae
AF251436, Ferrimicrobium acidiphilum, type sp., Acidimicrobiaceae
AY140237, Ferrithrix thermotolerans, type sp., Acidimicrobiaceae
AB517669, Aciditerrimonas ferrireducens, type sp., Unclassified Acidimicrobineae

AB360448, Iamia majanohamensis, type sp., Iamiaceae

AB360343, Ilumatobacter fluminis, type sp., Acidimicrobiaceae

Coriobacteriaceae (29)
AB306661, Adlercreutzia equolifaciens, type sp., Coriobacteriaceae
AB266102, Asaccharobacter celatus, type sp., Coriobacteriaceae
DQ789120, Enterorhabdus caecimuris, Coriobacteriaceae
AM747811, Enterorhabdus mucosicola, type sp., Coriobacteriaceae
U43492, Denitrobacterium detoxificans, type sp., Coriobacteriaceae
AF292375, Eggerthella lenta, type sp., Coriobacteriaceae
AY321958, Eggerthella sinensis, Coriobacteriaceae
AY288517, Paraeggerthella hongkongensis, type sp., Coriobacteriaceae
AM886059, Gordonibacter pamelaeae, type sp., Coriobacteriaceae
AB019260, Cryptobacterium curtum, type sp., Coriobacteriaceae
AF101240, Slackia exigua, type sp., Coriobacteriaceae
AF101241, Slackia heliotrinireducens, Coriobacteriaceae
EU826403, Slackia isoflavoniconvertens, Coriobacteriaceae
AJ608686, Slackia faecicanis, Coriobacteriaceae
AB490806, Slackia piriformis, Coriobacteriaceae
EU377663, Slackia equolifaciens, Coriobacteriaceae
AB031063, Collinsella intestinalis, Coriobacteriaceae
AB031061, Collinsella stercoris, Coriobacteriaceae
AB011816, Collinsella aerofaciens, type sp., Coriobacteriaceae
AB490807, Collinsella tanakaei, Coriobacteriaceae
X79048, Coriobacterium glomerans, type sp., Coriobacteriaceae
AF292373, Olsenella uli, type sp., Coriobacteriaceae
FN178463, Olsenella umbonata, Coriobacteriaceae
AF292374, Olsenella profusa, Coriobacteriaceae
Y17195, Atopobium vaginae, Coriobacteriaceae
L34620, Atopobium fossor, Coriobacteriaceae
X67148, Atopobium minutum, type sp., Coriobacteriaceae
CP001721, Atopobium parvulum, Coriobacteriaceae
AF292371, Atopobium rimae, Coriobacteriaceae

Solirubrobacterales (7)

Patulibacteraceae (3)
AB193261, Patulibacter minatonensis, type sp., Patulibacteraceae
EU710748, Patulibacter ginsengiterrae, Patulibacteraceae
AJ871306, Patulibacter americanus, Patulibacteraceae

CP001854, Conexibacter woesei, type sp., Conexibacteraceae

Solirubrobacteraceae (3)
AY039806, Solirubrobacter pauli, type sp., Solirubrobacteraceae
AB245334, Solirubrobacter soli, Solirubrobacteraceae
EU332825, Solirubrobacter ginsenosidimutans, Solirubrobacteraceae

AJ458462, Thermoleophilum album, type sp., Thermoleophilaceae

JF423906, Gaiella occulta, type sp., Gaiellaceae

Rubrobacteraceae (3)
U65647, Rubrobacter radiotolerans, type sp., Rubrobacteraceae
AF465803, Rubrobacter taiwanensis, Rubrobacteraceae
CP000386, Rubrobacter xylanophilus , Rubrobacteraceae

Chloroflexi (20)

Chloroflexi (5)

Chloroflexales (3)
CP001337, Chloroflexus aggregans, Chloroflexaceae
D38365, Chloroflexus aurantiacus, type sp., Chloroflexaceae
CP000804, Roseiflexus castenholzii, type sp., Chloroflexaceae

Herpetosiphonales (2)
CP000875, Herpetosiphon aurantiacus, type sp., Herpetosiphonaceae
AF039293, Herpetosiphon geysericola, Herpetosiphonaceae

Thermomicrobia (2)
AJ420142, Sphaerobacter thermophilus, type sp., Sphaerobacteraceae
M34115, Thermomicrobium roseum, type sp., Thermomicrobiaceae

Ktedonobacteria (4)

Ktedonobacterales (2)
AM180156, Ktedonobacter racemifer, type sp., Ktedonobacteraceae
AB500145, Thermosporothrix hazakensis, type sp., Thermosporotrichaceae

Thermogemmatisporales (2)
AB547913, Thermogemmatispora foliorum, Thermogemmatisporaceae
AB547912, Thermogemmatispora onikobensis, type sp., Thermogemmatisporaceae

Anaerolineae (6)
AB243672, Bellilinea caldifistulae, type sp., Anaerolineaceae
AB109439, Levilinea saccharolytica, type sp., Anaerolineaceae
AB243673, Longilinea arvoryzae, type sp., Anaerolineaceae
AB109438, Leptolinea tardivitalis, type sp., Anaerolineaceae
AB046413, Anaerolinea thermophila, type sp., Anaerolineaceae
AB109437, Anaerolinea thermolimosa, Anaerolineaceae

AB067647, Caldilinea aerophila, type sp., Caldilineaceae

HM134893, Caldilinea tarbellica, Caldilineaceae
EU679419, Dehalogenimonas lykanthroporepellens, type sp., Dehalococcoidetes

Firmicutes and Tenericutes (2081)

Bacilli and Tenericutes (1402)

Lactobacillales (407)

Lactobacillaceae and Leuconostocaceae (205)

AB366386, Lactobacillus otakiensis, Lactobacillaceae
AB366385, Lactobacillus sunkii, Lactobacillaceae
AJ621553, Lactobacillus kefiri, Lactobacillaceae
AB205056, Lactobacillus parabuchneri, Lactobacillaceae
AY026750, Lactobacillus parakefiri, Lactobacillaceae
AB205055, Lactobacillus buchneri, Lactobacillaceae
AB366388, Lactobacillus kisonensis, Lactobacillaceae
AB366389, Lactobacillus rapi, Lactobacillaceae
AF264701, Lactobacillus diolivorans, Lactobacillaceae
AB262734, Lactobacillus parafarraginis, Lactobacillaceae
AB262731, Lactobacillus farraginis, Lactobacillaceae
M58821, Lactobacillus hilgardii, Lactobacillaceae
AB602570, Lactobacillus senioris, Lactobacillaceae
X95421, Lactobacillus lindneri, Lactobacillaceae
AB498045, Lactobacillus florum, Lactobacillaceae
X76327, Lactobacillus sanfranciscensis, Lactobacillaceae
X76330, Lactobacillus fructivorans, Lactobacillaceae
AJ621552, Lactobacillus homohiochii, Lactobacillaceae
Y11374, Lactobacillus kunkeei, Lactobacillaceae
AB572588, Lactobacillus ozensis, Lactobacillaceae
FJ904277, Lactobacillus koreensis, Lactobacillaceae
FN185731, Lactobacillus paucivorans, Lactobacillaceae
AM158249, Lactobacillus parabrevis, Lactobacillaceae
AJ632219, Lactobacillus hammesii, Lactobacillaceae
AB297927, Lactobacillus senmaizukei, Lactobacillaceae
M58810, Lactobacillus brevis, Lactobacillaceae
AJ534844, Lactobacillus spicheri, Lactobacillaceae
AJ632158, Lactobacillus acidifarinae, Lactobacillaceae
AJ632157, Lactobacillus zymae, Lactobacillaceae
AM259118, Lactobacillus namurensis, Lactobacillaceae
AB005893, Lactobacillus collinoides, Lactobacillaceae
AJ786665, Lactobacillus paracollinoides, Lactobacillaceae
AB365975, Lactobacillus odoratitofui, Lactobacillaceae
AB282889, Lactobacillus similis, Lactobacillaceae
EU678893, Lactobacillus kimchicus, Lactobacillaceae
AM113783, Lactobacillus malefermentans, Lactobacillaceae
D79211, Lactobacillus pentosus, Lactobacillaceae
AJ965482, Lactobacillus plantarum subsp. plantarum, Lactobacillaceae
AJ640078, Lactobacillus plantarum subsp. argentoratensis, Lactobacillaceae
AJ306297, Lactobacillus paraplantarum, Lactobacillaceae
HM443954, Lactobacillus xiangfangensis, Lactobacillaceae
AM905388, Lactobacillus fabifermentans, Lactobacillaceae
AY253659, Lactobacillus antri, Lactobacillaceae
X94229, Lactobacillus oris, Lactobacillaceae
X94230, Lactobacillus panis, Lactobacillaceae
X76329, Lactobacillus pontis, Lactobacillaceae
AF243177, Lactobacillus vaginalis, Lactobacillaceae
AJ250074, Lactobacillus frumenti, Lactobacillaceae
L23507, Lactobacillus reuteri, Lactobacillaceae
AM113776, Lactobacillus coleohominis, Lactobacillaceae
AM279150, Lactobacillus secaliphilus, Lactobacillaceae
AF333975, Lactobacillus ingluviei, Lactobacillaceae
AB288050, Lactobacillus equigenerosi, Lactobacillaceae
AY253658, Lactobacillus gastricus, Lactobacillaceae
ACGI01000130, Lactobacillus fermentum, Lactobacillaceae
AF126738, Lactobacillus mucosae, Lactobacillaceae
AJ564009, Lactobacillus rossiae, Lactobacillaceae
AB370882, Lactobacillus siliginis, Lactobacillaceae
AY733084, Lactobacillus oligofermentans, Lactobacillaceae
AJ575744, Lactobacillus suebicus, Lactobacillaceae
AJ621556, Lactobacillus vaccinostercus, Lactobacillaceae
AF469172, Lactobacillus casei, Lactobacillaceae
D86516, Lactobacillus zeae, Lactobacillaceae
AB181950, Lactobacillus paracasei subsp. tolerans, Lactobacillaceae
D79212, Lactobacillus paracasei subsp. paracasei, Lactobacillaceae
D16552, Lactobacillus rhamnosus, Lactobacillaceae
AB257864, Lactobacillus camelliae, Lactobacillaceae
AF000162, Lactobacillus manihotivorans, Lactobacillaceae
AB608051, Lactobacillus nasuensis, Lactobacillaceae
AF413523, Lactobacillus pantheris, Lactobacillaceae
AB257863, Lactobacillus thailandensis, Lactobacillaceae
M58831, Lactobacillus sharpeae, Lactobacillaceae
AJ305320, Pediococcus acidilactici, Lactobacillaceae
AB362985, Pediococcus lolii, Lactobacillaceae
AJ305321, Pediococcus pentosaceus, Lactobacillaceae
AJ621555, Pediococcus claussenii, Lactobacillaceae
AJ973157, Pediococcus stilesii, Lactobacillaceae
AM709786, Pediococcus argentinicus, Lactobacillaceae
AY956788, Pediococcus cellicola, Lactobacillaceae
AB258357, Pediococcus siamensis, Lactobacillaceae
AY956789, Pediococcus ethanolidurans, Lactobacillaceae
AJ318414, Pediococcus damnosus, type sp., Lactobacillaceae
AJ271383, Pediococcus inopinatus, Lactobacillaceae
D88528, Pediococcus parvulus, Lactobacillaceae
AB602569, Lactobacillus saniviri, Lactobacillaceae
AF183558, Lactobacillus kimchii, Lactobacillaceae
AB018528, Lactobacillus paralimentarius, Lactobacillaceae
AY681134, Lactobacillus bobalius, Lactobacillaceae
M58804, Lactobacillus alimentarius, Lactobacillaceae
M58817, Lactobacillus farciminis, Lactobacillaceae
HQ322270, Lactobacillus futsaii, Lactobacillaceae
AM285450, Lactobacillus crustorum, Lactobacillaceae
AJ313530, Lactobacillus mindensis, Lactobacillaceae
AY690834, Lactobacillus nantensis, Lactobacillaceae
AJ496791, Lactobacillus versmoldensis, Lactobacillaceae
AB332024, Lactobacillus nodensis, Lactobacillaceae
AJ576006, Lactobacillus tucceti, Lactobacillaceae
AJ575741, Lactobacillus coryniformis subsp. torquens, Lactobacillaceae
M58813, Lactobacillus coryniformis subsp. coryniformis, Lactobacillaceae
AJ576007, Lactobacillus rennini, Lactobacillaceae
AM113777, Lactobacillus curvatus, Lactobacillaceae
AM113784, Lactobacillus sakei subsp. sakei, Lactobacillaceae
AY204889, Lactobacillus sakei subsp. carnosus, Lactobacillaceae
AM113778, Lactobacillus graminis, Lactobacillaceae
AB370875, Lactobacillus fuchuensis, Lactobacillaceae
Y17361, Lactobacillus amylolyticus, Lactobacillaceae
AJ306298, Lactobacillus hamsteri, Lactobacillaceae
AY944408, Lactobacillus amylovorus, Lactobacillaceae
 AB107638, Lactobacillus kitasatonis, Lactobacillaceae
AY773947, Lactobacillus acidophilus, Lactobacillaceae
AM113782, Lactobacillus kefiranofaciens subsp. kefirgranum, Lactobacillaceae
AM113781, Lactobacillus kefiranofaciens subsp. kefiranofaciens, Lactobacillaceae
AF257097, Lactobacillus crispatus, Lactobacillaceae
AY253660, Lactobacillus ultunensis, Lactobacillaceae
AJ417737, Lactobacillus gallinarum, Lactobacillaceae
AM113779, Lactobacillus helveticus, Lactobacillaceae
AY253657, Lactobacillus kalixensis, Lactobacillaceae
FR681899, Lactobacillus gigeriorum, Lactobacillaceae
AJ306299, Lactobacillus intestinalis, Lactobacillaceae
AY773949, Lactobacillus delbrueckii subsp. delbrueckii, type sp., Lactobacillaceae
AY050173, Lactobacillus delbrueckii subsp. lactis, Lactobacillaceae
CR954253, Lactobacillus delbrueckii subsp. bulgaricus , Lactobacillaceae
AY421720, Lactobacillus delbrueckii subsp. indicus, Lactobacillaceae
AB290830, Lactobacillus equicursoris, Lactobacillaceae
M58801, Lactobacillus acetotolerans, Lactobacillaceae
Y18654, Lactobacillus fornicalis, Lactobacillaceae
AF243176, Lactobacillus jensenii, Lactobacillaceae
AJ272391, Lactobacillus psittaci, Lactobacillaceae
AF519171, Lactobacillus gasseri, Lactobacillaceae
AJ002515, Lactobacillus johnsonii, Lactobacillaceae
EU487512, Lactobacillus taiwanensis, Lactobacillaceae
Y16329, Lactobacillus iners, Lactobacillaceae
M58806, Lactobacillus amylophilus, Lactobacillaceae
AM236149, Lactobacillus amylotrophicus, Lactobacillaceae
AY683322, Lactobacillus concavus, Lactobacillaceae
D87679, Lactobacillus dextrinicus, Lactobacillaceae
AB196123, Lactobacillus harbinensis, Lactobacillaceae
Y19167, Lactobacillus perolens, Lactobacillaceae
AB268118, Lactobacillus composti, Lactobacillaceae
AF049745, Paralactobacillus selangorensis, type sp., Lactobacillaceae

Leuconostocaceae (38)
AF175402, Leuconostoc gelidum, Leuconostocaceae
AF173986, Leuconostoc kimchii, Leuconostocaceae
AF439560, Leuconostoc inhae, Leuconostocaceae
AF231131, Leuconostoc gasicomitatum, Leuconostocaceae
AB022925, Leuconostoc carnosum, Leuconostocaceae
HQ263024, Leuconostoc miyukkimchii, Leuconostocaceae
AF111948, Leuconostoc citreum, Leuconostocaceae
AM600682, Leuconostoc holzapfelii, Leuconostocaceae
AB023968, Leuconostoc lactis, Leuconostocaceae
AM940225, Leuconostoc palmae, Leuconostocaceae
AB023237, Leuconostoc pseudomesenteroides, Leuconostocaceae
AB023244, Leuconostoc mesenteroides subsp. dextranicum, Leuconostocaceae
CP000414, Leuconostoc mesenteroides subsp. mesenteroides , type sp., Leuconostocaceae
AB023247, Leuconostoc mesenteroides subsp. cremoris, Leuconostocaceae
HM443957, Leuconostoc mesenteroides subsp. suionicum, Leuconostocaceae
AY169967, Fructobacillus pseudoficulneus, Leuconostocaceae
AB542054, Fructobacillus tropaeoli, Leuconostocaceae
AF360736, Fructobacillus ficulneus, Leuconostocaceae
AJ780981, Fructobacillus durionis, Leuconostocaceae
AF360737, Fructobacillus fructosus, Leuconostocaceae
AF360738, Leuconostoc fallax, Leuconostocaceae
AB221475, Oenococcus kitaharae, Leuconostocaceae
AB022924, Oenococcus oeni, type sp., Leuconostocaceae
AB022926, Weissella halotolerans, Leuconostocaceae
FN813251, Weissella ceti, Leuconostocaceae
AB022920, Weissella minor, Leuconostocaceae
AB023236, Weissella viridescens, type sp., Leuconostocaceae
AB023238, Weissella paramesenteroides, Leuconostocaceae
AB023838, Weissella thailandensis, Leuconostocaceae
S67831, Weissella hellenica, Leuconostocaceae
AB023241, Weissella confusa, Leuconostocaceae
AJ295989, Weissella cibaria, Leuconostocaceae
M23038, Weissella kandleri, Leuconostocaceae
AY035891, Weissella koreensis, Leuconostocaceae
AY028260, Weissella soli, Leuconostocaceae
FM179678, Weissella fabaria, Leuconostocaceae
AM882997, Weissella ghanensis, Leuconostocaceae
EU439435, Weissella beninensis, Leuconostocaceae

AB523780, Lactobacillus floricola, Lactobacillaceae

AB023836, Lactobacillus acidipiscis, Lactobacillaceae
AB326358, Lactobacillus pobuzihii, Lactobacillaceae
M58808, Lactobacillus aviarius subsp. aviarius, Lactobacillaceae
AB267406, Lactobacillus hayakitensis, Lactobacillaceae
AF089108, Lactobacillus salivarius, Lactobacillaceae
AY255802, Lactobacillus saerimneri, Lactobacillaceae
AM292799, Lactobacillus ceti, Lactobacillaceae
M58803, Lactobacillus agilis, Lactobacillaceae
AB048833, Lactobacillus equi, Lactobacillaceae
AB326354, Lactobacillus ruminis, Lactobacillaceae
AB326350, Lactobacillus animalis, Lactobacillaceae
AJ621554, Lactobacillus murinus, Lactobacillaceae
AJ871178, Lactobacillus apodemi, Lactobacillaceae
DQ523489, Lactobacillus ghanensis, Lactobacillaceae
AB162131, Lactobacillus nagelii, Lactobacillaceae
AJ576009, Lactobacillus vini, Lactobacillaceae
AY681127, Lactobacillus oeni, Lactobacillaceae
AB154519, Lactobacillus satsumensis, Lactobacillaceae
AB365976, Lactobacillus capillatus, Lactobacillaceae
AB433982, Lactobacillus sucicola, Lactobacillaceae
DQ664203, Lactobacillus aquaticus, Lactobacillaceae
AY681126, Lactobacillus uvarum, Lactobacillaceae
EU074850, Lactobacillus hordei, Lactobacillaceae
M58824, Lactobacillus mali, Lactobacillaceae
AM905389, Lactobacillus cacaonum, Lactobacillaceae
AB033209, Lactobacillus algidus, Lactobacillaceae

Enterococcaceae and Streptococcaceae (145)

Streptococcaceae (88)
AY099095, Streptococcus oligofermentans, Streptococcaceae
AF432856, Streptococcus sinensis, Streptococcaceae
AY188347, Streptococcus cristatus, Streptococcaceae
AY485604, Streptococcus australis, Streptococcaceae
AF003933, Streptococcus parasanguinis, Streptococcaceae
AF003930, Streptococcus pneumoniae, Streptococcaceae
AY612844, Streptococcus pseudopneumoniae, Streptococcaceae
AF003929, Streptococcus mitis, Streptococcaceae
AY485602, Streptococcus oralis, Streptococcaceae
AY485603, Streptococcus infantis, Streptococcaceae
 AF003928, Streptococcus sanguinis, Streptococcaceae
AY309095, Streptococcus constellatus subsp. pharyngis, Streptococcaceae
AF104676, Streptococcus constellatus subsp. constellatus, Streptococcaceae
AF104671, Streptococcus intermedius, Streptococcaceae
AF104678, Streptococcus anginosus, Streptococcaceae
AY769997, Streptococcus massiliensis, Streptococcaceae
AF003931, Streptococcus gordonii, Streptococcaceae
GU045364, Streptococcus lactarius, Streptococcaceae
AB008314, Streptococcus peroris, Streptococcaceae
AM774228, Streptococcus plurextorum, Streptococcaceae
AM941160, Streptococcus porci, Streptococcaceae
AF009477, Streptococcus suis, Streptococcaceae
AJ307888, Streptococcus gallinaceus, Streptococcaceae
AF201898, Streptococcus hyointestinalis, Streptococcaceae
AF429763, Streptococcus infantarius subsp. coli, Streptococcaceae
AJ297215, Streptococcus lutetiensis, Streptococcaceae
AF177729, Streptococcus infantarius subsp. infantarius, Streptococcaceae
AJ301607, Streptococcus equinus, Streptococcaceae
DQ232528, Streptococcus gallolyticus subsp. pasteurianus, Streptococcaceae
X94337, Streptococcus gallolyticus subsp. gallolyticus, Streptococcaceae
Z94012, Streptococcus gallolyticus subsp. macedonicus, Streptococcaceae
AF201899, Streptococcus alactolyticus, Streptococcaceae
AY188352, Streptococcus salivarius subsp. salivarius, Streptococcaceae
AY188353, Streptococcus vestibularis, Streptococcaceae
AY188354, Streptococcus salivarius subsp. thermophilus, Streptococcaceae
FN643224, Streptococcus porcorum, Streptococcaceae
AJ420201, Streptococcus ratti, Streptococcaceae
AB501126, Streptococcus ursoris, Streptococcaceae
AY188348, Streptococcus mutans, Streptococcaceae
AJ564067, Streptococcus devriesei, Streptococcaceae
AB469560, Streptococcus dentapri, Streptococcaceae
AY188351, Streptococcus macacae, Streptococcaceae
AY058218, Streptococcus ferus, Streptococcaceae
AB002516, Streptococcus equi subsp. zooepidemicus, Streptococcaceae
DQ303186, Streptococcus equi subsp. equi, Streptococcaceae
AJ605748, Streptococcus equi subsp. ruminatorum, Streptococcaceae
AB259061, Streptococcus dentirousetti, Streptococcaceae
AY188350, Streptococcus downei, Streptococcaceae
AY188349, Streptococcus sobrinus, Streptococcaceae
AJ420198, Streptococcus criceti, Streptococcaceae
AB182324, Streptococcus orisuis, Streptococcaceae
AJ409287, Streptococcus entericus, Streptococcaceae
AY232832, Streptococcus minor, Streptococcaceae
Y07601, Streptococcus hyovaginalis, Streptococcaceae
Y09007, Streptococcus thoraltensis, Streptococcaceae
AJ634751, Streptococcus marimammalium, Streptococcaceae
AM396401, Streptococcus merionis, Streptococcaceae
FN813250, Streptococcus rupicaprae, Streptococcaceae
Y17358, Streptococcus ovis, Streptococcaceae
EF364098, Streptococcus caballi, Streptococcaceae
AF124350, Streptococcus orisratti, Streptococcaceae
EF364097, Streptococcus henryi, Streptococcaceae
AB023573, Streptococcus uberis, Streptococcaceae
AJ131965, Streptococcus urinalis, Streptococcaceae
AB002483, Streptococcus canis, Streptococcaceae
AB002521, Streptococcus pyogenes, type sp., Streptococcaceae
DQ462421, Streptococcus ictaluri, Streptococcaceae
AJ606047, Streptococcus castoreus, Streptococcaceae
DQ303209, Streptococcus pseudoporcinus, Streptococcaceae
AB002523, Streptococcus porcinus, Streptococcaceae
AF176103, Streptococcus didelphis, Streptococcaceae
AJ621053, Streptococcus phocae, Streptococcaceae
AB023574, Streptococcus agalactiae, Streptococcaceae
AJ606046, Streptococcus halichoeri, Streptococcaceae
DQ232540, Streptococcus dysgalactiae subsp. equisimilis, Streptococcaceae
AB002485, Streptococcus dysgalactiae subsp. dysgalactiae, Streptococcaceae
AY584477, Streptococcus parauberis, Streptococcaceae
AF335572, Streptococcus iniae, Streptococcaceae
AB100804, Lactococcus lactis subsp. hordniae, Streptococcaceae
AB100803, Lactococcus lactis subsp. lactis, type sp., Streptococcaceae
AB100802, Lactococcus lactis subsp. cremoris, Streptococcaceae
EU770697, Lactococcus lactis subsp. tructae, Streptococcaceae
AB598994, Lactococcus garvieae, Streptococcaceae
AJ439543, Lactovum miscens, type sp., Streptococcaceae
EF694028, Lactococcus chungangensis, Streptococcaceae
EF694030, Lactococcus raffinolactis, Streptococcaceae
DQ343754, Lactococcus piscium, Streptococcaceae
EF694029, Lactococcus plantarum, Streptococcaceae

AY533171, Pilibacter termitis, type sp., Enterococcaceae

AY396047, Enterococcus hermanniensis, Enterococcaceae
DQ411812, Enterococcus pallens, Enterococcaceae
AF133535, Enterococcus avium, Enterococcaceae
Y18296, Enterococcus raffinosus, Enterococcaceae
DQ411810, Enterococcus gilvus, Enterococcaceae
AJ301835, Enterococcus malodoratus, Enterococcaceae
AJ891167, Enterococcus devriesei, Enterococcaceae
AF061002, Enterococcus pseudoavium, Enterococcaceae
HQ378515, Enterococcus viikkiensis, Enterococcaceae
AJ301830, Enterococcus faecium, Enterococcaceae
GU983697, Enterococcus lactis, Enterococcaceae
AF539705, Enterococcus ratti, Enterococcaceae
Y17302, Enterococcus hirae, Enterococcaceae
AJ276354, Enterococcus durans, Enterococcaceae
EF197994, Enterococcus thailandicus, Enterococcaceae
AF061013, Enterococcus mundtii, Enterococcaceae
AJ271329, Enterococcus villorum, Enterococcaceae
AF039903, Enterococcus casseliflavus, Enterococcaceae
AF039900, Enterococcus gallinarum, Enterococcaceae
X76177, Enterococcus canis, Enterococcaceae
AY862507, Melissococcus plutonius, type sp., Enterococcaceae
AJ888906, Enterococcus canintestini, Enterococcaceae
AF061007, Enterococcus dispar, Enterococcaceae
EU522087, Tetragenococcus halophilus subsp. flandriensis, Enterococcaceae
D88668, Tetragenococcus halophilus subsp. halophilus, type sp., Enterococcaceae
AJ301840, Tetragenococcus solitarius, Enterococcaceae
AY690334, Tetragenococcus koreensis, Enterococcaceae
D88824, Tetragenococcus muriaticus, Enterococcaceae
EU522083, Tetragenococcus osmophilus, Enterococcaceae
EF154454, Enterococcus camelliae, Enterococcaceae
AJ582753, Enterococcus italicus, Enterococcaceae
AF061001, Enterococcus sulfureus, Enterococcaceae
AF061004, Enterococcus saccharolyticus, Enterococcaceae
Y11621, Enterococcus asini, Enterococcaceae
 AF061009, Enterococcus cecorum, Enterococcaceae
AF061006, Enterococcus columbae, Enterococcaceae
AJ854484, Catellicoccus marimammalium, type sp., Enterococcaceae
AJ877015, Enterococcus aquimarinus, Enterococcaceae
AY028437, Enterococcus phoeniculicola, Enterococcaceae
AY943820, Enterococcus caccae, Enterococcaceae
AM039966, Enterococcus silesiacus, Enterococcaceae
GU457264, Enterococcus ureasiticus, Enterococcaceae
AF286832, Enterococcus haemoperoxidus, Enterococcaceae
AF286831, Enterococcus moraviensis, Enterococcaceae
HQ847537, Enterococcus plantarum, Enterococcaceae
AB012212, Enterococcus faecalis, type sp., Enterococcaceae
GU457262, Enterococcus quebecensis, Enterococcaceae
AM039968, Enterococcus termitis, Enterococcaceae
AF445297, Vagococcus elongatus, Enterococcaceae
Y17152, Vagococcus lutrae, Enterococcaceae
FJ211190, Vagococcus acidifermentans, Enterococcaceae
FJ360897, Vagococcus penaei, Enterococcaceae
AY179329, Vagococcus carniphilus, Enterococcaceae
Y18098, Vagococcus fluvialis, type sp., Enterococcaceae
Y18097, Vagococcus salmoninarum, Enterococcaceae
AJ243326, Vagococcus fessus, Enterococcaceae

GU459067, Pisciglobus halotolerans, type sp., Carnobacteriaceae

Y17300, Desemzia incerta, type sp., Carnobacteriaceae
AB268549, Alkalibacterium indicireducens, Carnobacteriaceae
AB294166, Alkalibacterium pelagium, Carnobacteriaceae
AB294165, Alkalibacterium thalassium, Carnobacteriaceae
AF143511, Alkalibacterium olivapovliticus, type sp., Carnobacteriaceae
AB188091, Alkalibacterium iburiense, Carnobacteriaceae
AB125938, Alkalibacterium psychrotolerans, Carnobacteriaceae
AB294171, Alkalibacterium kapii, Carnobacteriaceae
AB555562, Alkalibacterium subtropicum, Carnobacteriaceae
AB294167, Alkalibacterium putridalgicola, Carnobacteriaceae
AB247277, Marinilactibacillus piezotolerans, Carnobacteriaceae
AB083406, Marinilactibacillus psychrotolerans, type sp., Carnobacteriaceae
AJ410303, Allofustis seminis, type sp., Carnobacteriaceae
AF445248, Atopostipes suicloacalis, type sp., Carnobacteriaceae
X59765, Alloiococcus otitis, type sp., Carnobacteriaceae
X70907, Dolosigranulum pigrum, type sp., Carnobacteriaceae
AJ634917, Atopococcus tabaci, type sp., Carnobacteriaceae
AB430339, Lacticigenium naphtae, type sp., Carnobacteriaceae
S86170, Carnobacterium funditum, Carnobacteriaceae
AB083414, Carnobacterium mobile, Carnobacteriaceae
Z73313, Carnobacterium inhibens, Carnobacteriaceae
AF425608, Carnobacterium viridans, Carnobacteriaceae
EU817500, Carnobacterium jeotgali, Carnobacteriaceae
AF450136, Carnobacterium pleistocenium, Carnobacteriaceae
AJ302648, Isobaculum melis, type sp., Carnobacteriaceae
AJ387905, Carnobacterium gallinarum, Carnobacteriaceae
M58825, Carnobacterium maltaromaticum, Carnobacteriaceae
M58816, Carnobacterium divergens, type sp., Carnobacteriaceae
AJ306612, Trichococcus collinsii, Carnobacteriaceae
AF394926, Trichococcus patagoniensis, Carnobacteriaceae
X87150, Trichococcus pasteurii, Carnobacteriaceae
AJ306611, Trichococcus flocculiformis, type sp., Carnobacteriaceae
AJ296179, Trichococcus palustris, Carnobacteriaceae
Y16546, Atopobacter phocae, type sp., Carnobacteriaceae
FM177901, Bavariicoccus seileri, type sp., Enterococcaceae
D50540, Granulicatella adiacens, type sp., Carnobacteriaceae
AF016390, Granulicatella elegans, Carnobacteriaceae
Y16547, Granulicatella balaenopterae, Carnobacteriaceae

Aerococcaceae (18)
Y18053, Facklamia languida, Aerococcaceae
AJ277381, Facklamia miroungae, Aerococcaceae
Y10772, Facklamia hominis, type sp., Aerococcaceae
Y15716, Facklamia ignava, Aerococcaceae
Y17820, Facklamia tabacinasalis, Aerococcaceae
Y16426, Ignavigranum ruoffiae, type sp., Aerococcaceae
AJ012666, Dolosicoccus paucivorans, type sp., Aerococcaceae
Y17312, Facklamia sourekii, Aerococcaceae
AJ297627, Globicatella sulfidifaciens, Aerococcaceae
Y17780, Eremococcus coleocola, type sp., Aerococcaceae
D50541, Abiotrophia defectiva, type sp., Aerococcaceae
D87677, Pediococcus urinaeequi, Lactobacillaceae
ADNT01000041, Aerococcus viridans, type sp., Aerococcaceae
AM230658, Aerococcus suis, Aerococcaceae
AJ278341, Aerococcus urinaehominis, Aerococcaceae
Y17005, Aerococcus christensenii, Aerococcaceae
M77819, Aerococcus urinae, Aerococcaceae
AJ276512, Aerococcus sanguinicola, Aerococcaceae

Tenericutes (186)

Mycoplasmatales (109)
M24290, Mycoplasma agalactiae, Mycoplasmataceae
U02968, Mycoplasma bovis, Mycoplasmataceae
AF221118, Mycoplasma primatum, Mycoplasmataceae
U16760, Mycoplasma leopharyngis, Mycoplasmataceae
AF221116, Mycoplasma maculosum, Mycoplasmataceae
U67943, Mycoplasma adleri, Mycoplasmataceae
U15795, Mycoplasma felifaucium, Mycoplasmataceae
AF221117, Mycoplasma opalescens, Mycoplasmataceae
AF221111, Mycoplasma caviae, Mycoplasmataceae
M24289, Mycoplasma fermentans, Mycoplasmataceae
AF221119, Mycoplasma spermatophilum, Mycoplasmataceae
AF221115, Mycoplasma lipofaciens, Mycoplasmataceae
M24291, Mycoplasma bovigenitalium, Mycoplasmataceae
M24582, Mycoplasma californicum, Mycoplasmataceae
U16323, Mycoplasma simbae, Mycoplasmataceae
AM774638, Mycoplasma mucosicanis, Mycoplasmataceae
AF304324, Mycoplasma phocirhinis, Mycoplasmataceae
AF221112, Mycoplasma columbinasale, Mycoplasmataceae
AF221114, Mycoplasma iners, Mycoplasmataceae
AF221113, Mycoplasma columbinum, Mycoplasmataceae
L24105, Mycoplasma gallinarum, Mycoplasmataceae
L24106, Mycoplasma meleagridis, Mycoplasmataceae
U58997, Mycoplasma hyopharyngis, Mycoplasmataceae
M24581, Mycoplasma lipophilum, Mycoplasmataceae
AF412973, Mycoplasma citelli, Mycoplasmataceae
AF412987, Mycoplasma oxoniensis, Mycoplasmataceae
AF412975, Mycoplasma columborale, Mycoplasmataceae
U22013, Mycoplasma sturni, Mycoplasmataceae
 AF412971, Mycoplasma buteonis, Mycoplasmataceae
AF412980, Mycoplasma gallopavonis, Mycoplasmataceae
AF412981, Mycoplasma glycophilum, Mycoplasmataceae
L08054, Mycoplasma corogypsi, Mycoplasmataceae
AF340023, Mycoplasma canis, Mycoplasmataceae
AF412978, Mycoplasma cynos, Mycoplasmataceae
U44766, Mycoplasma bovirhinis, Mycoplasmataceae
U16759, Mycoplasma leonicaptivi, Mycoplasmataceae
X52083, Mycoplasma synoviae, Mycoplasmataceae
U09787, Mycoplasma felis, Mycoplasmataceae
AF412986, Mycoplasma mustelae, Mycoplasmataceae
L24104, Mycoplasma gallinaceum, Mycoplasmataceae
AF412989, Mycoplasma verecundum, Mycoplasmataceae
AF412969, Mycoplasma alligatoris, Mycoplasmataceae
AF412977, Mycoplasma crocodyli, Mycoplasmataceae
AF412970, Mycoplasma anatis, Mycoplasmataceae
U58504, Mycoplasma pullorum, Mycoplasmataceae
AF221121, Mycoplasma elephantis, Mycoplasmataceae
AF221120, Mycoplasma equigenitalium, Mycoplasmataceae
AF125593, Mycoplasma indiense, Mycoplasmataceae
AY796060, Mycoplasma orale, Mycoplasmataceae
U26730, Mycoplasma hyosynoviae, Mycoplasmataceae
AF125590, Mycoplasma faucium, Mycoplasmataceae
AF125588, Mycoplasma subdolum, Mycoplasmataceae
AF125586, Mycoplasma buccale, Mycoplasmataceae
AF125583, Mycoplasma salivarium, Mycoplasmataceae
M24580, Mycoplasma arthritidis, Mycoplasmataceae
AF125585, Mycoplasma equirhinis, Mycoplasmataceae
AF304325, Mycoplasma phocidae, Mycoplasmataceae
AF443616, Mycoplasma hominis, Mycoplasmataceae
AF125581, Mycoplasma arginini, Mycoplasmataceae
U15796, Mycoplasma gateae, Mycoplasmataceae
U44769, Mycoplasma canadense, Mycoplasmataceae
U44764, Mycoplasma alkalescens, Mycoplasmataceae
U67944, Mycoplasma auris, Mycoplasmataceae
AF304323, Mycoplasma phocicerebrale, Mycoplasmataceae
FR682077, Mycoplasma neophronis, Mycoplasmataceae
AF125587, Mycoplasma spumans, Mycoplasmataceae
AF125591, Mycoplasma falconis, Mycoplasmataceae
AF125584, Mycoplasma anseris, Mycoplasmataceae
AF125592, Mycoplasma cloacale, Mycoplasmataceae
AF125589, Mycoplasma gypis, Mycoplasmataceae
U09786, Mycoplasma agassizii, Mycoplasmataceae
U19768, Mycoplasma testudineum, Mycoplasmataceae
AF125582, Mycoplasma pulmonis, Mycoplasmataceae
AF412979, Mycoplasma dispar, Mycoplasmataceae
U44771, Mycoplasma ovipneumoniae, Mycoplasmataceae
X62699, Mycoplasma flocculare, Mycoplasmataceae
AE017243, Mycoplasma hyopneumoniae, Mycoplasmataceae
U44768, Mycoplasma bovoculi, Mycoplasmataceae
U44770, Mycoplasma conjunctivae, Mycoplasmataceae
AF412982, Mycoplasma hyorhinis, Mycoplasmataceae
AF538681, Mycoplasma collis, Mycoplasmataceae
AF412976, Mycoplasma cricetuli, Mycoplasmataceae
M23944, Mycoplasma neurolyticum, Mycoplasmataceae
AF412983, Mycoplasma lagogenitalium, Mycoplasmataceae
AF538683, Mycoplasma molare, Mycoplasmataceae
AY714305, Mycoplasma iguanae, Mycoplasmataceae
AF412984, Mycoplasma moatsii, Mycoplasmataceae
AF412988, Mycoplasma sualvi, Mycoplasmataceae
M24480, Mycoplasma mobile, Mycoplasmataceae
D78651, Ureaplasma felinum, Mycoplasmataceae
D78649, Ureaplasma cati, Mycoplasmataceae
D78648, Ureaplasma canigenitalium, Mycoplasmataceae
D78650, Ureaplasma diversum, Mycoplasmataceae
AF073456, Ureaplasma parvum, Mycoplasmataceae
AF073450, Ureaplasma urealyticum , type sp., Mycoplasmataceae
U62937, Ureaplasma gallorale, Mycoplasmataceae
M24293, Mycoplasma iowae, Mycoplasmataceae
M23939, Mycoplasma muris, Mycoplasmataceae
L10839, Mycoplasma penetrans, Mycoplasmataceae
AF212859, Mycoplasma microti, Mycoplasmataceae
AY531655, Mycoplasma amphoriforme, Mycoplasmataceae
U09788, Mycoplasma testudinis, Mycoplasmataceae
M23940, Mycoplasma pirum, Mycoplasmataceae
U44765, Mycoplasma alvi, Mycoplasmataceae
L24103, Mycoplasma imitans, Mycoplasmataceae
X77334, Mycoplasma genitalium, Mycoplasmataceae
AF132740, Mycoplasma pneumoniae, Mycoplasmataceae
AF125879, Mycoplasma cavipharyngis, Mycoplasmataceae
AF125878, Mycoplasma fastidiosum, Mycoplasmataceae

Entomoplasmatales (59)
DQ860100, Spiroplasma lineolae, Spiroplasmataceae
FR733693, Spiroplasma tabanidicola, Spiroplasmataceae
M24475, Spiroplasma gladiatoris, Spiroplasmataceae
AY189132, Spiroplasma helicoides, Spiroplasmataceae
AY189126, Spiroplasma chinense, Spiroplasmataceae
AY189311, Spiroplasma velocicrescens, Spiroplasmataceae
AY189129, Spiroplasma culicicola, Spiroplasmataceae
AY189307, Spiroplasma montanense, Spiroplasmataceae
GU993267, Spiroplasma apis, Spiroplasmataceae
FR733690, Spiroplasma clarkii, Spiroplasmataceae
AY189306, Spiroplasma litorale, Spiroplasmataceae
AY189310, Spiroplasma turonicum, Spiroplasmataceae
AY189128, Spiroplasma corruscae, Spiroplasmataceae
AY345990, Entomoplasma melaleucae, Entomoplasmataceae
FR733691, Spiroplasma diabroticae, Spiroplasmataceae
AY189131, Spiroplasma floricola, Spiroplasmataceae
GU585673, Spiroplasma monobiae, Spiroplasmataceae
DQ861914, Spiroplasma cantharicola, Spiroplasmataceae
AY189130, Spiroplasma diminutum, Spiroplasmataceae
HM037992, Spiroplasma taiwanense, Spiroplasmataceae
AY189134, Spiroplasma lampyridicola, Spiroplasmataceae
AY189305, Spiroplasma leptinotarsae, Spiroplasmataceae
AY189125, Spiroplasma alleghenense, Spiroplasmataceae
AY189308, Spiroplasma sabaudiense, Spiroplasmataceae
U26046, Mycoplasma capricolum subsp. capricolum, Mycoplasmataceae
U26054, Mycoplasma leachii, Mycoplasmataceae
M94728, Mycoplasma capricolum subsp. capripneumoniae, Mycoplasmataceae
BX293980, Mycoplasma mycoides subsp. mycoides, type sp., Mycoplasmataceae
U26037, Mycoplasma mycoides subsp. capri, Mycoplasmataceae
U67945, Mycoplasma cottewii, Mycoplasmataceae
U67946, Mycoplasma yeatsii, Mycoplasmataceae
 U26055, Mycoplasma putrefaciens, Mycoplasmataceae
AF305693, Mesoplasma entomophilum, Entomoplasmataceae
AY174170, Mesoplasma grammopterae, Entomoplasmataceae
AF300327, Mesoplasma florum, type sp., Entomoplasmataceae
AY187288, Mesoplasma tabanidae, Entomoplasmataceae
DQ514605, Mesoplasma coleopterae, Entomoplasmataceae
AY166704, Mesoplasma chauliocola, Entomoplasmataceae
AY168929, Mesoplasma corruscae, Entomoplasmataceae
AY351331, Mesoplasma seiffertii, Entomoplasmataceae
AY231458, Mesoplasma syrphidae, Entomoplasmataceae
AY177627, Mesoplasma photuris, Entomoplasmataceae
AF036954, Entomoplasma freundtii, Entomoplasmataceae
AY157871, Entomoplasma somnilux, Entomoplasmataceae
AF547212, Entomoplasma lucivorax, Entomoplasmataceae
AY155670, Entomoplasma luminosum, Entomoplasmataceae
AF303132, Mesoplasma lactucae, Entomoplasmataceae

Spiroplasmataceae (10)
X63781, Spiroplasma citri, type sp., Spiroplasmataceae
AY325304, Spiroplasma melliferum, Spiroplasmataceae
GU562447, Spiroplasma kunkelii, Spiroplasmataceae
AY772395, Spiroplasma phoeniceum, Spiroplasmataceae
AY189133, Spiroplasma insolitum, Spiroplasmataceae
AY771927, Spiroplasma penaei, Spiroplasmataceae
M24483, Spiroplasma poulsonii, Spiroplasmataceae
DQ917753, Spiroplasma eriocheiris, Spiroplasmataceae
AY189127, Spiroplasma chrysopicola, Spiroplasmataceae
AY189309, Spiroplasma syrphidicola, Spiroplasmataceae

GU585671, Spiroplasma ixodetis, Spiroplasmataceae

GU993266, Spiroplasma platyhelix, Spiroplasmataceae

Acholeplasmataceae (15)
U14905, Acholeplasma laidlawii, type sp., Acholeplasmataceae
AY257485, Acholeplasma pleciae, Acholeplasmataceae
AY538166, Acholeplasma granularum, Acholeplasmataceae
U14904, Acholeplasma oculi, Acholeplasmataceae
AY538165, Acholeplasma equifetale, Acholeplasmataceae
AY538167, Acholeplasma hippikon, Acholeplasmataceae
AY538164, Acholeplasma cavigenitalium, Acholeplasmataceae
M23933, Acholeplasma modicum, Acholeplasmataceae
AF412968, Acholeplasma axanthum, Acholeplasmataceae
L33734, Acholeplasma palmae, Acholeplasmataceae
AY538170, Acholeplasma parvum, Acholeplasmataceae
U16758, Mycoplasma feliminutum, Mycoplasmataceae
AY538168, Acholeplasma morum, Acholeplasmataceae
AF031479, Acholeplasma vituli, Acholeplasmataceae
AY538163, Acholeplasma brassicae, Acholeplasmataceae

Anaeroplasmataceae (3)
M25049, Anaeroplasma bactoclasticum, Anaeroplasmataceae
M23934, Anaeroplasma varium, Anaeroplasmataceae
M25050, Anaeroplasma abactoclasticum, type sp., Anaeroplasmataceae

AJ417075, Allobaculum stercoricanis, type sp., Erysipelotrichaceae

M59230, Eubacterium biforme, Eubacteriaceae
L34617, Eubacterium cylindroides, Eubacteriaceae
M23730, Streptococcus pleomorphus, Streptococcaceae
M23732, Clostridium innocuum, Clostridiaceae
L34683, Eubacterium tortuosum, Eubacteriaceae
L34682, Eubacterium dolichum, Eubacteriaceae
AF220064, Bulleidia extructa, type sp., Erysipelotrichaceae
AB031056, Solobacterium moorei, type sp., Erysipelotrichaceae
GU585668, Anaerorhabdus furcosa, type sp., Bacteroidaceae
Y11466, Holdemania filiformis, type sp., Erysipelotrichaceae
AB034200, Erysipelothrix rhusiopathiae, type sp., Erysipelotrichaceae
AB055906, Erysipelothrix tonsillarum, Erysipelotrichaceae
AJ550617, Erysipelothrix inopinata, Erysipelotrichaceae
AJ621549, Eggerthia catenaformis, type sp., Erysipelotrichaceae
AB210824, Sharpea azabuensis, type sp., Lactobacillaceae
AB210825, Kandleria vitulina, type sp., Erysipelotrichaceae
AB030224, Catenibacterium mitsuokai, type sp., Erysipelotrichaceae
AB030219, Coprobacillus cateniformis, type sp., Erysipelotrichaceae
Y18188, Clostridium cocleatum, Clostridiaceae
X75908, Clostridium spiroforme, Clostridiaceae
DQ100445, Clostridium saccharogumia, Clostridiaceae
X73440, Clostridium ramosum, Clostridiaceae
M22351, Asteroleplasma anaerobium, type sp., Anaeroplasmataceae
AF349724, Turicibacter sanguinis, type sp., Erysipelotrichaceae
EF999972, Haloplasma contractile, type sp., Haloplasmataceae

Incertae Sedis XI (7)

Y13365, Gemella bergeri, Unclassified Bacillales
AJ251987, Gemella cuniculi, Unclassified Bacillales
Y17280, Gemella palaticanis, Unclassified Bacillales
EU427463, Gemella asaccharolytica, Unclassified Bacillales
L14327, Gemella morbillorum, Unclassified Bacillales
L14326, Gemella haemolysans, type sp., Unclassified Bacillales
Y13364, Gemella sanguinis, Unclassified Bacillales

Staphylococcaceae (87)
AB009938, Staphylococcus delphini, Staphylococcaceae
D83369, Staphylococcus intermedius, Staphylococcaceae
AJ780976, Staphylococcus pseudintermedius, Staphylococcaceae
S83568, Staphylococcus schleiferi subsp. schleiferi, Staphylococcaceae
AB009945, Staphylococcus schleiferi subsp. coagulans, Staphylococcaceae
HM484980, Staphylococcus agnetis, Staphylococcaceae
D83368, Staphylococcus hyicus, Staphylococcaceae
D83360, Staphylococcus chromogenes, Staphylococcaceae
D83364, Staphylococcus felis, Staphylococcaceae
X84731, Staphylococcus lutrae, Staphylococcaceae
EU888120, Staphylococcus microti , Staphylococcaceae
FM242137, Staphylococcus rostri, Staphylococcaceae
FR733703, Staphylococcus muscae, Staphylococcaceae
Y15750, Staphylococcus condimenti, Staphylococcaceae
Y15754, Staphylococcus piscifermentans, Staphylococcaceae
AB233329, Staphylococcus carnosus subsp. utilis, Staphylococcaceae
D83373, Staphylococcus simulans, Staphylococcaceae
AB009934, Staphylococcus carnosus subsp. carnosus, Staphylococcaceae
D83358, Staphylococcus auricularis, Staphylococcaceae
AP008934, Staphylococcus saprophyticus subsp. saprophyticus, Staphylococcaceae
AB233327, Staphylococcus saprophyticus subsp. bovis, Staphylococcaceae
D83374, Staphylococcus xylosus, Staphylococcaceae
AB009933, Staphylococcus arlettae, Staphylococcaceae
 D83366, Staphylococcus gallinarum, Staphylococcaceae
AF527483, Staphylococcus equorum subsp. linens, Staphylococcaceae
AB009939, Staphylococcus equorum subsp. equorum, Staphylococcaceae
AF004220, Staphylococcus succinus subsp. succinus, Staphylococcaceae
AJ320272, Staphylococcus succinus subsp. casei, Staphylococcaceae
AB009940, Staphylococcus kloosii, Staphylococcaceae
AB009936, Staphylococcus cohnii subsp. urealyticus, Staphylococcaceae
D83361, Staphylococcus cohnii subsp. cohnii, Staphylococcaceae
AJ517414, Staphylococcus nepalensis, Staphylococcaceae
EU707796, Staphylococcus massiliensis, Staphylococcaceae
AF322002, Staphylococcus pettenkoferi, Staphylococcaceae
L37599, Staphylococcus capitis subsp. capitis, Staphylococcaceae
AB009935, Staphylococcus caprae, Staphylococcaceae
AB009937, Staphylococcus capitis subsp. urealyticus, Staphylococcaceae
D83363, Staphylococcus epidermidis, Staphylococcaceae
L37602, Staphylococcus saccharolyticus, Staphylococcaceae
L36472, Staphylococcus aureus subsp. aureus, type sp., Staphylococcaceae
AY727530, Staphylococcus simiae, Staphylococcaceae
D83355, Staphylococcus aureus subsp. anaerobius, Staphylococcaceae
AB009944, Staphylococcus pasteuri, Staphylococcaceae
L37603, Staphylococcus warneri, Staphylococcaceae
FJ389206, Staphylococcus devriesei, Staphylococcaceae
AB233326, Staphylococcus hominis subsp. novobiosepticus, Staphylococcaceae
X66101, Staphylococcus hominis subsp. hominis, Staphylococcaceae
X66100, Staphylococcus haemolyticus, Staphylococcaceae
AB009941, Staphylococcus lugdunensis, Staphylococcaceae
AB233332, Staphylococcus sciuri subsp. rodentium, Staphylococcaceae
AB233331, Staphylococcus sciuri subsp. carnaticus, Staphylococcaceae
AJ421446, Staphylococcus sciuri subsp. sciuri, Staphylococcaceae
AB233330, Staphylococcus fleurettii, Staphylococcaceae
AB009946, Staphylococcus vitulinus, Staphylococcaceae
D83370, Staphylococcus lentus, Staphylococcaceae
GQ222244, Staphylococcus stepanovicii, Staphylococcaceae
Y15714, Macrococcus bovicus, Staphylococcaceae
AY119687, Macrococcus lamae, Staphylococcaceae
AY119686, Macrococcus brunensis, Staphylococcaceae
Y15713, Macrococcus carouselicus, Staphylococcaceae
Y15712, Macrococcus equipercicus, type sp., Staphylococcaceae
AY119685, Macrococcus hajekii, Staphylococcaceae
D83359, Macrococcus caseolyticus, Staphylococcaceae
GU295938, Jeotgalicoccus coquinae, Staphylococcaceae
AY028926, Jeotgalicoccus psychrophilus, Staphylococcaceae
GU295939, Jeotgalicoccus aerolatus, Staphylococcaceae
FJ386517, Jeotgalicoccus halophilus, Staphylococcaceae
AY028925, Jeotgalicoccus halotolerans, type sp., Staphylococcaceae
FJ237390, Jeotgalicoccus nanhaiensis, Staphylococcaceae
FJ158840, Jeotgalicoccus huakuii, Staphylococcaceae
EU583727, Jeotgalicoccus marinus, Staphylococcaceae
AJ251530, Jeotgalicoccus pinnipedialis, Staphylococcaceae
EU240886, Nosocomiicoccus ampullae, type sp., Staphylococcaceae
DQ837380, Salinicoccus kunmingensis, Staphylococcaceae
FJ436724, Salinicoccus qingdaonensis, Staphylococcaceae
EF177692, Salinicoccus albus, Staphylococcaceae
AF275710, Salinicoccus alkaliphilus, Staphylococcaceae
DQ471329, Salinicoccus jeotgali, Staphylococcaceae
DQ333949, Salinicoccus salsiraiae, Staphylococcaceae
AB258358, Salinicoccus siamensis, Staphylococcaceae
DQ989633, Salinicoccus halodurans, Staphylococcaceae
FJ182049, Salinicoccus carnicancri , Staphylococcaceae
AY028927, Salinicoccus hispanicus, Staphylococcaceae
FR669114, Salinicoccus sesuvii, Staphylococcaceae
DQ352839, Salinicoccus luteus, Staphylococcaceae
DQ767692, Salinicoccus iranensis, Staphylococcaceae
X94559, Salinicoccus roseus, type sp., Staphylococcaceae

Paenibacillaceae 2 (25)
AB271756, Brevibacillus brevis, type sp., Paenibacillaceae
AB112712, Brevibacillus formosus, Paenibacillaceae
AB112716, Brevibacillus agri, Paenibacillaceae
D78458, Brevibacillus centrosporus, Paenibacillaceae
AB112713, Brevibacillus choshinensis, Paenibacillaceae
AB112715, Brevibacillus reuszeri, Paenibacillaceae
AB112714, Brevibacillus parabrevis, Paenibacillaceae
AB112717, Brevibacillus limnophilus, Paenibacillaceae
AF378232, Brevibacillus invocatus, Paenibacillaceae
EU383033, Brevibacillus panacihumi, Paenibacillaceae
D16271, Brevibacillus laterosporus, Paenibacillaceae
EU375457, Brevibacillus fluminis, Paenibacillaceae
AB112721, Brevibacillus borstelensis, Paenibacillaceae
AB245376, Brevibacillus ginsengisoli, Paenibacillaceae
AJ715378, Brevibacillus levickii, Paenibacillaceae
HQ419073, Brevibacillus aydinogluensis, Paenibacillaceae
Z26921, Brevibacillus thermoruber, Paenibacillaceae
X94194, Aneurinibacillus aneurinilyticus, type sp., Paenibacillaceae
X94195, Aneurinibacillus migulanus, Paenibacillaceae
AB112725, Aneurinibacillus danicus, Paenibacillaceae
AJ715385, Aneurinibacillus terranovensis, Paenibacillaceae
X94196, Aneurinibacillus thermoaerophilus, Paenibacillaceae
Y14578, Ammoniphilus oxalaticus, type sp., Paenibacillaceae
Y14580, Ammoniphilus oxalivorans, Paenibacillaceae
Y14581, Oxalophagus oxalicus, type sp., Paenibacillaceae

Incertae Sedis XII (13)

DQ019166, Exiguobacterium aurantiacum, type sp., Unclassified Bacillales
AM072764, Exiguobacterium mexicanum, Unclassified Bacillales
AY594264, Exiguobacterium aestuarii, Unclassified Bacillales
AY818050, Exiguobacterium profundum, Unclassified Bacillales
AY594266, Exiguobacterium marinum, Unclassified Bacillales
CP001022, Exiguobacterium sibiricum, Unclassified Bacillales
DQ019165, Exiguobacterium undae, Unclassified Bacillales
AM072763, Exiguobacterium artemiae, Unclassified Bacillales
AB105164, Exiguobacterium oxidotolerans, Unclassified Bacillales
DQ019164, Exiguobacterium antarcticum, Unclassified Bacillales
AY864633, Exiguobacterium soli, Unclassified Bacillales
DQ019167, Exiguobacterium acetylicum, Unclassified Bacillales
AJ846291, Exiguobacterium indicum, Unclassified Bacillales

Listeriaceae (11)
X98529, Listeria ivanovii subsp. londoniensis, Listeriaceae
X98528, Listeria ivanovii subsp. ivanovii, Listeriaceae
DQ065845, Listeria seeligeri, Listeriaceae
X56153, Listeria monocytogenes, type sp., Listeriaceae
X98527, Listeria innocua, Listeriaceae
 DQ065846, Listeria welshimeri, Listeriaceae
EU545982, Listeria marthii, Listeriaceae
FJ557241, Listeria rocourtiae, Listeriaceae
X56156, Brochothrix campestris, Listeriaceae
AY543023, Brochothrix thermosphacta, type sp., Listeriaceae
X98526, Listeria grayi, Listeriaceae

AY667496, Bacillus koreensis, Bacillaceae

AJ010478, Anoxybacillus pushchinoensis, type sp., Bacillaceae
FJ438370, Anoxybacillus tengchongensis, Bacillaceae
GQ153549, Anoxybacillus eryuanensis, Bacillaceae
HM016869, Anoxybacillus flavithermus subsp. yunnanensis, Bacillaceae
EF654664, Anoxybacillus mongoliensis, Bacillaceae
Z26932, Anoxybacillus flavithermus subsp. flavithermus, Bacillaceae
AM409184, Anoxybacillus bogrovensis, Bacillaceae
AY122325, Anoxybacillus gonensis, Bacillaceae
AY248711, Anoxybacillus kestanbolensis, Bacillaceae
AF001963, Anoxybacillus ayderensis, Bacillaceae
AF510985, Anoxybacillus kamchatkensis, Bacillaceae
EU326496, Anoxybacillus salavatliensis, Bacillaceae
AJ551330, Anoxybacillus contaminans, Bacillaceae
AB110008, Anoxybacillus voinovskiensis, Bacillaceae
AJ618979, Anoxybacillus amylolyticus, Bacillaceae
AJ879076, Anoxybacillus rupiensis, Bacillaceae
FN428691, Anoxybacillus tepidamans, Bacillaceae
FN428698, Anoxybacillus caldiproteolyticus, Bacillaceae
FR749979, Geobacillus gargensis, Bacillaceae
AY608935, Geobacillus thermocatenulatus, Bacillaceae
AY044055, Geobacillus lituanicus, Bacillaceae
AY312404, Geobacillus jurassicus, Bacillaceae
AF276304, Geobacillus uzenensis, Bacillaceae
AB021196, Geobacillus stearothermophilus, type sp., Bacillaceae
X60618, Geobacillus kaustophilus, Bacillaceae
Z26923, Geobacillus thermoleovorans, Bacillaceae
AJ293805, Geobacillus vulcani, Bacillaceae
AF276306, Geobacillus subterraneus, Bacillaceae
EU477773, Geobacillus thermodenitrificans subsp. calidus, Bacillaceae
AY608961, Geobacillus thermodenitrificans subsp. thermodenitrificans, Bacillaceae
FN428699, Caldibacillus debilis, type sp., Bacillaceae
FR749957, Geobacillus thermantarcticus, Bacillaceae
AY608981, Geobacillus thermoglucosidasius, Bacillaceae
AF326278, Geobacillus toebii, Bacillaceae
L09227, Saccharococcus thermophilus, type sp., Bacillaceae
AY605232, Bacillus alveayuensis, Bacillaceae
Z26930, Aeribacillus pallidus, type sp., Bacillaceae
AY397764, Bacillus thermolactis, Bacillaceae
L27478, Bacillus thermoamylovorans, Bacillaceae
U20385, Bacillus infernus, Bacillaceae
AB112727, Bacillus methanolicus, Bacillaceae
AJ504797, Bacillus aeolius, Bacillaceae
Z26935, Bacillus smithii, Bacillaceae
AY443039, Bacillus fordii, Bacillaceae
AY443038, Bacillus fortis, Bacillaceae
AY443036, Bacillus farraginis, Bacillaceae
AJ535638, Bacillus galactosidilyticus, Bacillaceae
AJ535639, Bacillus ruris, Bacillaceae
GU322908, Bacillus graminis, Bacillaceae
AB021189, Bacillus lentus, Bacillaceae
X77790, Bacillus badius, Bacillaceae
DQ870688, Bacillus canaveralius, Bacillaceae

Planococcaceae (75)
AJ314745, Planococcus antarcticus, Planococcaceae
X62173, Planococcus kocurii, Planococcaceae
EF079063, Planococcus donghaensis, Planococcaceae
JF742665, Planococcus halocryophilus, Planococcaceae
AY437845, Planomicrobium stackebrandtii, Planococcaceae
D55729, Planomicrobium okeanokoites, Planococcaceae
AF041791, Planomicrobium mcmeekinii, Planococcaceae
FJ265708, Planomicrobium flavidum, Planococcaceae
EU036220, Planomicrobium glaciei, Planococcaceae
AF029364, Planomicrobium alkanoclasticum, Planococcaceae
FJ765415, Planococcus salinarum, Planococcaceae
AJ314746, Planomicrobium psychrophilum, Planococcaceae
AF144750, Planomicrobium koreense, type sp., Planococcaceae
AJ697862, Planomicrobium chinense, Planococcaceae
AF500007, Planococcus maritimus, Planococcaceae
JF775504, Planococcus plakortidis, Planococcaceae
X62172, Planococcus citreus, type sp., Planococcaceae
AJ493659, Planococcus rifietoensis, Planococcaceae
AJ966515, Planococcus columbae, Planococcaceae
AJ544622, Planococcus maitriensis, Planococcaceae
X68415, Sporosarcina globispora, Planococcaceae
D16277, Sporosarcina psychrophila, Planococcaceae
AJ292316, Filibacter limicola, type sp., Planococcaceae
DQ073394, Sporosarcina soli, Planococcaceae
HQ676600, Sporosarcina pasteurii, Planococcaceae
FN298444, Sporosarcina contaminans, Planococcaceae
DQ073393, Sporosarcina koreensis, Planococcaceae
AB473560, Sporosarcina luteola, Planococcaceae
GU994085, Sporosarcina newyorkensis, Planococcaceae
AF202057, Sporosarcina ureae, type sp., Planococcaceae
AF202056, Sporosarcina aquimarina, Planococcaceae
AB243859, Sporosarcina saromensis, Planococcaceae
EF371374, Bacillus beijingensis, Bacillaceae
AM286423, Bhargavaea cecembensis, type sp., Planococcaceae
EF371375, Bacillus ginsengi, Bacillaceae
GU937385, Chungangia koreensis, type sp., Unclassified Bacillales
AB199591, Lysinibacillus boronitolerans, type sp., Bacillaceae
AJ628749, Lysinibacillus macroides, Bacillaceae
FJ477040, Lysinibacillus xylanilyticus, Bacillaceae
AJ310083, Lysinibacillus fusiformis, Bacillaceae
AJ310084, Lysinibacillus sphaericus, Bacillaceae
FM178866, Acetobacter pasteurianus subsp. ascendens, Acetobacteraceae
AB300598, Lysinibacillus parviboronicapiens, Bacillaceae
X70314, Caryophanon latum, type sp., Planococcaceae
X70315, Caryophanon tenue, Planococcaceae
AM773821, Bacillus cecembensis, Bacillaceae
AJ006086, Solibacillus silvestris, type sp., Unclassified Bacillales
AF526913, Bacillus odysseyi, Bacillaceae
DQ348071, Ureibacillus composti, Planococcaceae
DQ348072, Ureibacillus thermophilus, Planococcaceae
AY850379, Ureibacillus suwonensis, Planococcaceae
AJ276403, Ureibacillus terrenus, Planococcaceae
 AB101594, Ureibacillus thermosphaericus, type sp., Planococcaceae
AY677116, Bacillus massiliensis, Bacillaceae
DQ465405, Bacillus decisifrondis, Bacillaceae
AJ277983, Psychrobacillus psychrotolerans, Bacillaceae
AJ277984, Psychrobacillus psychrodurans, Bacillaceae
AM980508, Psychrobacillus insolitus, type sp., Bacillaceae
GQ927308, Chryseomicrobium imtechense, type sp., Planococcaceae
AB271738, Kurthia gibsonii, Planococcaceae
AB271740, Kurthia zopfii, type sp., Planococcaceae
AJ605774, Kurthia sibirica, Planococcaceae
AJ627212, Viridibacillus arenosi, Bacillaceae
AJ627211, Viridibacillus arvi, type sp., Bacillaceae
AF169520, Viridibacillus neidei, Bacillaceae
AB271739, Rummeliibacillus pycnus, Unclassified Bacillales
DQ870754, Rummeliibacillus stabekisii, type sp., Unclassified Bacillales
AJ514408, Paenisporosarcina macmurdoensis, Planococcaceae
EF154512, Sporosarcina antarctica, Planococcaceae
DQ333897, Paenisporosarcina quisquiliarum, type sp., Planococcaceae
AY190535, Jeotgalibacillus campisalis, Planococcaceae
AJ237708, Jeotgalibacillus marinus, Planococcaceae
FR693626, Jeotgalibacillus soli, Planococcaceae
AF281158, Jeotgalibacillus alimentarius, type sp., Planococcaceae
EU874389, Jeotgalibacillus salarius, Planococcaceae

AB021192, Bacillus mycoides, Bacillaceae

AB021199, Bacillus weihenstephanensis, Bacillaceae
D16281, Bacillus thuringiensis, Bacillaceae
AE016877, Bacillus cereus, Bacillaceae
AB190217, Bacillus anthracis, Bacillaceae
AF013121, Bacillus pseudomycoides, Bacillaceae
AF483625, Bacillus aquimaris, Bacillaceae
AB099708, Bacillus vietnamensis, Bacillaceae
AF483624, Bacillus marisflavi, Bacillaceae
AY667495, Bacillus seohaeanensis, Bacillaceae
EF014452, Bacillus coahuilensis, Bacillaceae
EU861362, Bacillus horneckiae, Bacillaceae
FN995265, Bacillus kochii, Bacillaceae
FR666703, Bacillus purgationiresistans, Bacillaceae
X76447, Bacillus halmapalus, Bacillaceae
AB043865, Bacillus horikoshii, Bacillaceae
X76437, Bacillus cohnii, Bacillaceae
DQ374637, Bacillus acidiceler, Bacillaceae
AJ419629, Bacillus luciferensis, Bacillaceae
GU434676, Bacillus endoradicis, Bacillaceae
AB021185, Bacillus flexus, Bacillaceae
D16273, Bacillus megaterium, Bacillaceae
AB049195, Bacillus funiculus, Bacillaceae
AB245380, Bacillus panaciterrae, Bacillaceae
AB363732, Bacillus azotoformans, Bacillaceae
AJ316309, Bacillus muralis, Bacillaceae
AM747813, Brevibacterium frigoritolerans, Brevibacteriaceae
AJ439078, Bacillus simplex, Bacillaceae
EF206294, Bacillus butanolivorans, Bacillaceae
AB021195, Bacillus psychrosaccharolyticus, Bacillaceae
AB109209, Bacillus asahii, Bacillaceae
AJ542512, Bacillus novalis, Bacillaceae
AJ542509, Bacillus vireti, Bacillaceae
AJ542506, Bacillus drentensis, Bacillaceae
AJ542508, Bacillus bataviensis, Bacillaceae
AJ542513, Bacillus soli, Bacillaceae
AJ250056, Bacillus fumarioli, Bacillaceae
AB021194, Bacillus niacini, Bacillaceae
AB245377, Bacillus pocheonensis, Bacillaceae
X60615, Bacillus fastidiosus, Bacillaceae
AY608605, Bacillus litoralis, Bacillaceae
AY998119, Bacillus niabensis, Bacillaceae
AJ583158, Bacillus indicus, Bacillaceae
AY550276, Bacillus cibi, Bacillaceae
AY904033, Bacillus idriensis, Bacillaceae
AJ781029, Bacillus herbersteinensis, Bacillaceae
FM162181, Bacillus galliciensis, Bacillaceae
GQ925365, Bacillus luteolus, Bacillaceae
AJ627210, Bacillus humi, Bacillaceae
AY829448, Bacillus alkalitelluris, Bacillaceae
AB198719, Bacillus boroniphilus, Bacillaceae
AB262082, Bacillus selenatarsenatis, Bacillaceae
AF221061, Bacillus jeotgali, Bacillaceae
FR733689, Bacillus subterraneus, Bacillaceae
DQ371431, Bacillus thioparans, Bacillaceae
AJ717382, Bacillus foraminis, Bacillaceae
AY043084, Bacillus circulans, Bacillaceae
EU656111, Bacillus nealsonii, Bacillaceae
EU603328, Bacillus korlensis, Bacillaceae
AF071856, Bacillus siralis, Bacillaceae
X60611, Bacillus benzoevorans, Bacillaceae
D16268, Bacillus firmus, Bacillaceae
AY904032, Bacillus infantis, Bacillaceae
GQ292772, Bacillus oceanisediminis, Bacillaceae
EU364818, Falsibacillus pallidus, type sp., Bacillaceae
DQ280367, Bacillus kribbensis, Bacillaceae

Bacillaceae 1 (21)
AB255669, Bacillus amyloliquefaciens, Bacillaceae
GQ281299, Bacillus siamensis, Bacillaceae
EU194897, Bacillus methylotrophicus, Bacillaceae
AJ276351, Bacillus subtilis subsp. subtilis, type sp., Bacillaceae
EU138467, Bacillus subtilis subsp. inaquosorum, Bacillaceae
AB021191, Bacillus mojavensis, Bacillaceae
AM747812, Brevibacterium halotolerans, Brevibacteriaceae
AF074970, Bacillus subtilis subsp. spizizenii, Bacillaceae
HQ223107, Bacillus tequilensis, Bacillaceae
AB021198, Bacillus vallismortis, Bacillaceae
AJ831844, Bacillus aerophilus, Bacillaceae
AJ831841, Bacillus stratosphericus, Bacillaceae
AJ831842, Bacillus altitudinis, Bacillaceae
AY876289, Bacillus pumilus, Bacillaceae
AF234854, Bacillus safensis, Bacillaceae
AB021181, Bacillus atrophaeus, Bacillaceae
CP000560, Bacillus amyloliquefaciens subsp. plantarum, Bacillaceae
FN597644, Bacillus amyloliquefaciens subsp. amyloliquefaciens, Bacillaceae
AJ831843, Bacillus aerius, Bacillaceae
CP000002, Bacillus licheniformis , Bacillaceae
AF302118, Bacillus sonorensis, Bacillaceae

AB021182, Bacillus carboniphilus, Bacillaceae

 AF295302, Bacillus endophyticus, Bacillaceae
FJ514932, Bacillus chungangensis, Bacillaceae
AM503357, Bacillus isabeliae, Bacillaceae
AB271752, Bacillus coagulans, Bacillaceae
EF379274, Bacillus acidiproducens, Bacillaceae
AY988598, Bacillus oleronius, Bacillaceae
U49078, Bacillus sporothermodurans, Bacillaceae
AF547209, Bacillus acidicola, Bacillaceae
AB245378, Bacillus ginsengihumi, Bacillaceae
AJ250318, Bacillus shackletonii, Bacillaceae
AY793550, Bacillus lehensis, Bacillaceae
AB188090, Bacillus oshimensis, Bacillaceae
AY258614, Bacillus patagoniensis, Bacillaceae
HM054474, Bacillus xiaoxiensis, Bacillaceae
X76440, Bacillus clausii, Bacillaceae
X76446, Bacillus gibsonii, Bacillaceae
AJ880003, Bacillus plakortidis, Bacillaceae
AJ316316, Bacillus murimartini, Bacillaceae
X76449, Bacillus pseudalcaliphilus, Bacillaceae
AB434284, Bacillus trypoxylicola, Bacillaceae
X76436, Bacillus alcalophilus, Bacillaceae
AY376312, Bacillus bogoriensis, Bacillaceae
AB043858, Bacillus akibai, Bacillaceae
AJ606037, Bacillus alkalisediminis, Bacillaceae
AB086897, Bacillus krulwichiae, Bacillaceae
DQ026060, Bacillus okhensis, Bacillaceae
AB043851, Bacillus wakoensis, Bacillaceae
AB043846, Bacillus hemicellulosilyticus, Bacillaceae
GQ292773, Bacillus nanhaiisediminis, Bacillaceae
DQ675454, Anaerobacillus alkalilacustris, Bacillaceae
AY032601, Bacillus macyae, Bacillaceae
AF064705, Anaerobacillus arseniciselenatis, type sp., Bacillaceae
EU143680, Anaerobacillus alkalidiazotrophicus, Bacillaceae
EF422411, Bacillus alkalinitrilicus, Bacillaceae
X76439, Bacillus pseudofirmus, Bacillaceae
EU621902, Bacillus marmarensis, Bacillaceae
AJ302709, Bacillus halodurans, Bacillaceae
AB047684, Bacillus okuhidensis, Bacillaceae

Sporolactobacillaceae (8)
AB101595, Sporolactobacillus inulinus, type sp., Sporolactobacillaceae
AJ634662, Sporolactobacillus terrae, Sporolactobacillaceae
AB374522, Sporolactobacillus putidus, Sporolactobacillaceae
EF581819, Sporolactobacillus vineae, Sporolactobacillaceae
AJ698860, Sporolactobacillus nakayamae subsp. racemicus, Sporolactobacillaceae
AJ634663, Sporolactobacillus nakayamae subsp. nakayamae, Sporolactobacillaceae
D16270, Sporolactobacillus laevolacticus, Sporolactobacillaceae
AB374517, Sporolactobacillus kofuensis, Sporolactobacillaceae

AJ551329, Bacillus gelatini, Bacillaceae

EU046268, Bacillus solisalsi, Bacillaceae
AY373018, Bacillus macauensis, Bacillaceae
EU939689, Bacillus rigui, Bacillaceae
AJ422145, Bacillus barbaricus, Bacillaceae
GU477780, Bacillus nanhaiensis, Bacillaceae
AJ606700, Bacillus arsenicus, Bacillaceae
AJ315075, Bacillus decolorationis, Bacillaceae
JN187498, Bacillus berkeleyi, Bacillaceae
AF541966, Bacillus hwajinpoensis, Bacillaceae
HM460885, Bacillus hemicentroti, Bacillaceae
AY228462, Bacillus algicola, Bacillaceae
AY603978, Bacillus taeanensis, Bacillaceae

Bacillaceae 2 (129)
EF486356, Halobacillus campisalis, Bacillaceae
EF612763, Halobacillus seohaensis, Bacillaceae
AF500003, Halobacillus salinus, Bacillaceae
FJ456889, Halobacillus salsuginis, Bacillaceae
AM295006, Halobacillus alkaliphilus, Bacillaceae
HE717023, Halobacillus halophilus, type sp., Bacillaceae
X94558, Halobacillus litoralis, Bacillaceae
AY881246, Halobacillus yeomjeoni, Bacillaceae
AY190534, Halobacillus locisalis, Bacillaceae
AB243865, Halobacillus faecis, Bacillaceae
AJ310149, Halobacillus trueperi, Bacillaceae
AY351389, Halobacillus aidingensis, Bacillaceae
AB195680, Halobacillus kuroshimensis, Bacillaceae
AB021188, Salimicrobium halophilum, Bacillaceae
DQ227305, Salimicrobium luteum, Bacillaceae
FJ357160, Salimicrobium flavidum, Bacillaceae
FR714935, Salimicrobium salexigens, Bacillaceae
X90834, Salimicrobium album, type sp., Bacillaceae
AB189298, Halobacillus profundi, Bacillaceae
AJ486874, Halobacillus karajensis, Bacillaceae
AY351395, Halobacillus dabanensis, Bacillaceae
DQ888316, Halobacillus mangrovi, Bacillaceae
AY553296, Pontibacillus chungwhensis, type sp., Bacillaceae
AY603977, Pontibacillus marinus, Bacillaceae
EU583724, Pontibacillus litoralis , Bacillaceae
EF533969, Pontibacillus yanchengensis, Bacillaceae
EU583728, Pontibacillus halophilus, Bacillaceae
AJ717299, Thalassobacillus devorans, type sp., Bacillaceae
FM864226, Thalassobacillus cyri, Bacillaceae
EU817571, Thalassobacillus hwangdonensis, Bacillaceae
FN690978, Thalassobacillus pellis, Bacillaceae
DQ989634, Sediminibacillus albus, Bacillaceae
AM905297, Sediminibacillus halophilus, type sp., Bacillaceae
AY616012, Virgibacillus koreensis, Bacillaceae
AB196783, Halolactibacillus halophilus, type sp., Bacillaceae
AB196784, Halolactibacillus miurensis, Bacillaceae
EF554593, Halolactibacillus alkaliphilus, Bacillaceae
FJ746578, Streptohalobacillus salinus, type sp., Bacillaceae
AF418603, Amphibacillus fermentum, Bacillaceae
EU135728, Paraliobacillus quinghaiensis, Bacillaceae
AB243866, Amphibacillus sediminis, Bacillaceae
FJ169626, Amphibacillus jilinensis, Bacillaceae
EU143681, Natronobacillus azotifigens, type sp., Bacillaceae
D82065, Amphibacillus xylanus, type sp., Bacillaceae
AF418602, Amphibacillus tropicus, Bacillaceae
AB087828, Paraliobacillus ryukyuensis, type sp., Bacillaceae
DQ664540, Gracilibacillus lacisalsi, Bacillaceae
FJ182214, Gracilibacillus thailandensis, Bacillaceae
EU784646, Gracilibacillus saliphilus, Bacillaceae
AM040716, Gracilibacillus orientalis, Bacillaceae
AB197126, Gracilibacillus boraciitolerans, Bacillaceae
 HQ439902, Gracilibacillus kekensis, Bacillaceae
AF036922, Gracilibacillus halotolerans, type sp., Bacillaceae
AB101591, Gracilibacillus dipsosauri, Bacillaceae
EU709020, Gracilibacillus ureilyticus, Bacillaceae
EU135704, Gracilibacillus halophilus, Bacillaceae
EF520006, Gracilibacillus bigeumensis, Bacillaceae
DQ359731, Alkalibacillus halophilus, Bacillaceae
AY671976, Alkalibacillus salilacus, Bacillaceae
EU874387, Alkalibacillus flavidus, Bacillaceae
AB264528, Alkalibacillus silvisoli, Bacillaceae
AJ493661, Alkalibacillus filiformis, Bacillaceae
AJ238041, Alkalibacillus haloalkaliphilus, type sp., Bacillaceae
AB194046, Piscibacillus salipiscarius, type sp., Bacillaceae
FM864227, Piscibacillus halophilus, Bacillaceae
AM911047, Aquisalibacillus elongatus, type sp., Bacillaceae
AJ238042, Filobacillus milosensis, type sp., Bacillaceae
AY319933, Tenuibacillus multivorans, type sp., Bacillaceae
AB264529, Halalkalibacillus halophilus, type sp., Bacillaceae
FJ347755, Allobacillus halotolerans, type sp., Bacillaceae
AY321436, Salinibacillus aidingensis, type sp., Bacillaceae
AY321434, Salinibacillus kushneri, Bacillaceae
AM292417, Salirhabdus euzebyi, type sp., Bacillaceae
DQ519571, Terribacillus goriensis, Bacillaceae
AB243845, Terribacillus saccharophilus, type sp., Bacillaceae
AB243849, Terribacillus halophilus, Bacillaceae
FJ386524, Terribacillus aidingensis, Bacillaceae
AY321433, Lentibacillus halodurans, Bacillaceae
AY667493, Lentibacillus salarius, Bacillaceae
EF601571, Lentibacillus salinarum, Bacillaceae
AY057394, Lentibacillus salicampi, type sp., Bacillaceae
FN376846, Lentibacillus persicus, Bacillaceae
AB231905, Lentibacillus kapialis, Bacillaceae
FJ182050, Lentibacillus jeotgali, Bacillaceae
AB191345, Lentibacillus halophilus, Bacillaceae
AB127980, Lentibacillus juripiscarius, Bacillaceae
AY762976, Lentibacillus salis, Bacillaceae
AY667497, Lentibacillus lacisalsi, Bacillaceae
AY121439, Virgibacillus kekensis, Bacillaceae
EF675742, Virgibacillus arcticus, Bacillaceae
AJ316302, Virgibacillus carmonensis, Bacillaceae
AJ315056, Virgibacillus necropolis, Bacillaceae
FJ357159, Virgibacillus byunsanensis, Bacillaceae
FM205010, Virgibacillus salinus, Bacillaceae
FJ746573, Virgibacillus subterraneus, Bacillaceae
AB365482, Virgibacillus siamensis, Bacillaceae
AY543169, Virgibacillus halodenitrificans, Bacillaceae
AY121430, Virgibacillus sediminis, Bacillaceae
DQ664543, Virgibacillus xinjiangensis, Bacillaceae
Y11603, Virgibacillus salexigens, Bacillaceae
AJ009793, Virgibacillus marismortui, Bacillaceae
AB197851, Virgibacillus salarius, Bacillaceae
DQ139839, Virgibacillus olivae, Bacillaceae
AB366005, Oceanobacillus kapialis, Bacillaceae
AJ315060, Oceanobacillus picturae, Bacillaceae
EF101168, Virgibacillus chiguensis, Bacillaceae
AY822043, Virgibacillus dokdonensis, Bacillaceae
D16275, Virgibacillus pantothenticus, type sp., Bacillaceae
AJ012667, Virgibacillus proomii, Bacillaceae
GU202420, Virgibacillus alimentarius, Bacillaceae
GU586225, Virgibacillus campisalis, Bacillaceae
AJ640134, Oceanobacillus oncorhynchi subsp. incaldanensis, Bacillaceae
EU817570, Oceanobacillus locisalsi, Bacillaceae
AB188089, Oceanobacillus oncorhynchi subsp. oncorhynchi, Bacillaceae
EU709018, Oceanobacillus neutriphilus, Bacillaceae
AB473561, Oceanobacillus sojae, Bacillaceae
AB010863, Oceanobacillus iheyensis, type sp., Bacillaceae
GU784860, Oceanobacillus kimchii, Bacillaceae
DQ298074, Oceanobacillus chironomi, Bacillaceae
DQ386635, Oceanobacillus profundus, Bacillaceae
AB275883, Oceanobacillus caeni, Bacillaceae
Z26939, Bacillus thermocloacae, Bacillaceae
AM114102, Paucisalibacillus globulus, type sp., Bacillaceae
Y13066, Ornithinibacillus bavariensis, type sp., Bacillaceae
AF326365, Ornithinibacillus californiensis, Bacillaceae
FN597064, Ornithinibacillus contaminans, Bacillaceae
AB107894, Cerasibacillus quisquiliarum, type sp., Bacillaceae
EU213011, Virgibacillus soli, Bacillaceae
AB243851, Virgibacillus halophilus, Bacillaceae

AB021193, Pullulanibacillus naganoensis, type sp., Sporolactobacillaceae

AB231786, Tuberibacillus calidus, type sp., Sporolactobacillaceae
DQ115802, Bacillus qingdaonensis, Bacillaceae
AM982516, Bacillus halochares, Bacillaceae
DQ504377, Bacillus aidingensis, Bacillaceae
AY667494, Bacillus salarius, Bacillaceae
HQ433452, Bacillus iranensis, Bacillaceae
FM244839, Bacillus persepolensis, Bacillaceae
AB449106, Geomicrobium halophilum, Unclassified Bacillales
AB449109, Natribacillus halophilus, type sp., Bacillaceae
EU581835, Salsuginibacillus halophilus, Bacillaceae
AM492160, Salsuginibacillus kocurii, type sp., Bacillaceae
AY817493, Marinococcus halotolerans, Bacillaceae
FJ214659, Marinococcus luteus, Bacillaceae
X90835, Marinococcus halophilus, type sp., Bacillaceae
DQ168584, Sinobaca qinghaiensis, type sp., Sporolactobacillaceae
FJ825145, Bacillus beveridgei, Bacillaceae
AF064704, Bacillus selenitireducens, Bacillaceae
EU925618, Bacillus neizhouensis, Bacillaceae
X76445, Bacillus agaradhaerens, Bacillaceae
AM492159, Bacillus chagannorensis, Bacillaceae
GU583651, Bacillus daliensis, Bacillaceae
AJ493660, Bacillus saliphilus, Bacillaceae
FR714930, Bacillus locisalis, Bacillaceae
AJ605773, Bacillus aurantiacus, Bacillaceae
Z48306, Bacillus vedderi, Bacillaceae
AB043852, Bacillus cellulosilyticus, Bacillaceae
X76444, Bacillus clarkii, Bacillaceae
AB292819, Bacillus polygoni, Bacillaceae
D87035, Bacillus horti, Bacillaceae
AB043864, Bacillus mannanilyticus, Bacillaceae
AM050346, Vulcanibacillus modesticaldus, type sp., Bacillaceae

Paenibacillaceae 1 (155)
D85396, Paenibacillus amylolyticus, Paenibacillaceae
 EU558281, Paenibacillus xylanexedens, Paenibacillaceae
EU558284, Paenibacillus tundrae, Paenibacillaceae
EU179327, Paenibacillus taichungensis, Paenibacillaceae
AB045094, Paenibacillus pabuli, Paenibacillaceae
AY427832, Paenibacillus xylanilyticus, Paenibacillaceae
AJ716019, Paenibacillus barcinonensis, Paenibacillaceae
AB073192, Paenibacillus illinoisensis, Paenibacillaceae
AY323608, Paenibacillus massiliensis, Paenibacillaceae
AB245384, Paenibacillus panacisoli, Paenibacillaceae
EF212893, Paenibacillus provencensis, Paenibacillaceae
EF212892, Paenibacillus urinalis, Paenibacillaceae
AF273740, Paenibacillus brasilensis, Paenibacillaceae
AF391124, Paenibacillus terrae, Paenibacillaceae
D16276, Paenibacillus polymyxa, type sp., Paenibacillaceae
AF391123, Paenibacillus kribbensis, Paenibacillaceae
AJ320494, Paenibacillus peoriae, Paenibacillaceae
AJ271157, Paenibacillus jamilae, Paenibacillaceae
EU741036, Paenibacillus hunanensis, Paenibacillaceae
AB073189, Paenibacillus glucanolyticus, Paenibacillaceae
AB073188, Paenibacillus lautus, Paenibacillaceae
AY257868, Paenibacillus lactis, Paenibacillaceae
AF021924, Paenibacillus campinasensis, Paenibacillaceae
EU888513, Paenibacillus purispatii, Paenibacillaceae
FN556467, Paenibacillus uliginis, Paenibacillaceae
AJ318909, Paenibacillus anaericanus, Paenibacillaceae
GQ355277, Paenibacillus sediminis, Paenibacillaceae
AB248087, Paenibacillus terrigena, Paenibacillaceae
GQ423056, Paenibacillus pini, Paenibacillaceae
AF378694, Paenibacillus turicensis, Paenibacillaceae
AJ575658, Paenibacillus cineris, Paenibacillaceae
AY751754, Paenibacillus rhizosphaerae, Paenibacillaceae
AY208751, Paenibacillus favisporus, Paenibacillaceae
FJ178001, Paenibacillus cellulositrophicus, Paenibacillaceae
AJ272249, Paenibacillus azoreducens, Paenibacillaceae
AB073194, Paenibacillus chibensis, Paenibacillaceae
AJ250317, Paenibacillus cookii, Paenibacillaceae
AY741810, Paenibacillus motobuensis, Paenibacillaceae
AY167814, Paenibacillus barengoltzii, Paenibacillaceae
EU977789, Paenibacillus phoenicis, Paenibacillaceae
AY323612, Paenibacillus timonensis, Paenibacillaceae
AY323609, Paenibacillus sanguinis, Paenibacillaceae
GU187433, Paenibacillus puldeungensis, Paenibacillaceae
AB073196, Paenibacillus macerans, Paenibacillaceae
EU081509, Paenibacillus konsidensis, Paenibacillaceae
GQ303568, Fontibacillus panacisegetis, Paenibacillaceae
DQ023221, Fontibacillus aquaticus, type sp., Paenibacillaceae
DQ453131, Paenibacillus fonticola, Paenibacillaceae
AY847463, Paenibacillus woosongensis, Paenibacillaceae
AF480935, Paenibacillus nematophilus, Paenibacillaceae
GQ214052, Cohnella luojiensis, Paenibacillaceae
HQ315787, Cohnella arctica, Paenibacillaceae
GU181267, Cohnella suwonensis, Paenibacillaceae
GU181266, Cohnella soli, Paenibacillaceae
EU014872, Cohnella phaseoli, Paenibacillaceae
HQ704069, Cohnella cellulosilytica, Paenibacillaceae
AF433165, Cohnella hongkongensis, Paenibacillaceae
FJ001842, Cohnella terrae, Paenibacillaceae
FJ001841, Cohnella xylanilytica, Paenibacillaceae
AJ971483, Cohnella thermotolerans, type sp., Paenibacillaceae
EU912527, Cohnella damuensis, Paenibacillaceae
FJ001840, Cohnella thailandensis, Paenibacillaceae
AB271056, Cohnella panacarvi, Paenibacillaceae
EF368008, Cohnella yongneupensis , Paenibacillaceae
DQ459874, Cohnella laeviribosi, Paenibacillaceae
AB362828, Cohnella fontinalis, Paenibacillaceae
EU046270, Saccharibacillus kuerlensis, Paenibacillaceae
EU014873, Saccharibacillus sacchari, type sp., Paenibacillaceae
X60625, Paenibacillus macquariensis subsp. macquariensis, Paenibacillaceae
AB360546, Paenibacillus macquariensis subsp. defensor, Paenibacillaceae
AJ605292, Paenibacillus antarcticus, Paenibacillaceae
EU815294, Paenibacillus glacialis, Paenibacillaceae
AJ633647, Paenibacillus wynnii, Paenibacillaceae
AJ223990, Paenibacillus odorifer, Paenibacillaceae
AJ011322, Paenibacillus borealis, Paenibacillaceae
DQ338443, Paenibacillus forsythiae, Paenibacillaceae
DQ338444, Paenibacillus sabinae, Paenibacillaceae
DQ471303, Paenibacillus zanthoxyli, Paenibacillaceae
X77846, Paenibacillus durus, Paenibacillaceae
GQ985395, Paenibacillus sophorae, Paenibacillaceae
AJ316013, Paenibacillus stellifer, Paenibacillaceae
EU257201, Paenibacillus riograndensis, Paenibacillaceae
DQ358736, Paenibacillus sonchi, Paenibacillaceae
AJ223987, Paenibacillus graminis, Paenibacillaceae
GQ985393, Paenibacillus jilunlii, Paenibacillaceae
AB073199, Paenibacillus lentimorbus, Paenibacillaceae
AB073198, Paenibacillus popilliae, Paenibacillaceae
AB073197, Paenibacillus thiaminolyticus, Paenibacillaceae
AY359885, Paenibacillus dendritiformis, Paenibacillaceae
AJ320491, Paenibacillus alvei, Paenibacillaceae
AB073201, Paenibacillus apiarius, Paenibacillaceae
AY884046, Paenibacillus assamensis, Paenibacillaceae
DQ890521, Paenibacillus taiwanensis, Paenibacillaceae
AM411528, Paenibacillus humicus, Paenibacillaceae
AY167820, Paenibacillus pasadenensis, Paenibacillaceae
EU939687, Paenibacillus wooponensis, Paenibacillaceae
GQ423057, Paenibacillus pinihumi, Paenibacillaceae
EF125184, Paenibacillus tarimensis, Paenibacillaceae
AF290916, Paenibacillus daejeonensis, Paenibacillaceae
AB042938, Paenibacillus glycanilyticus, Paenibacillaceae
FJ820995, Paenibacillus prosopidis, Paenibacillaceae
GQ383922, Paenibacillus algorifonticola, Paenibacillaceae
AY839868, Paenibacillus xinjiangensis, Paenibacillaceae
EU099594, Paenibacillus castaneae, Paenibacillaceae
DQ407282, Paenibacillus cellulosilyticus, Paenibacillaceae
AB073202, Paenibacillus curdlanolyticus, Paenibacillaceae
AB073363, Paenibacillus kobensis, Paenibacillaceae
AY598818, Paenibacillus phyllosphaerae, Paenibacillaceae
GU124597, Paenibacillus sacheonensis, Paenibacillaceae
AF537343, Paenibacillus mendelii, Paenibacillaceae
DQ291142, Paenibacillus sepulcri, Paenibacillaceae
AB295646, Paenibacillus montaniterrae, Paenibacillaceae
AB295645, Paenibacillus siamensis, Paenibacillaceae
AF237682, Paenibacillus granivorans, Paenibacillaceae
EU400621, Paenibacillus camelliae, Paenibacillaceae
 AB295647, Paenibacillus septentrionalis, Paenibacillaceae
AB265206, Paenibacillus nanensis, Paenibacillaceae
AB265205, Paenibacillus thailandensis, Paenibacillaceae
AJ345023, Paenibacillus agaridevorans, Paenibacillaceae
GU187432, Paenibacillus chungangensis, Paenibacillaceae
FN394513, Paenibacillus sputi, Paenibacillaceae
AY960748, Paenibacillus alkaliterrae, Paenibacillaceae
AY839867, Paenibacillus harenae, Paenibacillaceae
AJ345020, Paenibacillus agarexedens, Paenibacillaceae
EF626690, Paenibacillus contaminans, Paenibacillaceae
FN293173, Paenibacillus residui, Paenibacillaceae
EF452662, Paenibacillus ginsengihumi, Paenibacillaceae
EU391156, Paenibacillus pueri, Paenibacillaceae
AF353681, Paenibacillus naphthalenovorans, Paenibacillaceae
AB073203, Paenibacillus validus, Paenibacillaceae
AB495094, Paenibacillus xylanisolvens, Paenibacillaceae
AF006076, Paenibacillus edaphicus, Paenibacillaceae
AF164345, Paenibacillus chinjuensis, Paenibacillaceae
GQ423055, Paenibacillus filicis, Paenibacillaceae
AF006077, Paenibacillus mucilaginosus, Paenibacillaceae
EU939688, Paenibacillus rigui, Paenibacillaceae
DQ309072, Paenibacillus soli, Paenibacillaceae
AY116665, Paenibacillus ehimensis, Paenibacillaceae
AF130254, Paenibacillus koreensis, Paenibacillaceae
AY090110, Paenibacillus elgii, Paenibacillaceae
FJ719490, Paenibacillus tianmuensis, Paenibacillaceae
AB073362, Paenibacillus alginolyticus, Paenibacillaceae
D82064, Paenibacillus chondroitinus, Paenibacillaceae
AB245386, Paenibacillus pocheonensis, Paenibacillaceae
EU570250, Paenibacillus aestuarii , Paenibacillaceae
EU391157, Paenibacillus pectinilyticus, Paenibacillaceae
FN689718, Paenibacillus chartarius, Paenibacillaceae
AB045100, Paenibacillus chitinolyticus, Paenibacillaceae
AY839866, Paenibacillus gansuensis, Paenibacillaceae
AB271057, Paenibacillus ginsengarvi, Paenibacillaceae
AB179866, Paenibacillus hodogayensis, Paenibacillaceae
AB041720, Paenibacillus koleovorans, Paenibacillaceae
AY530294, Paenibacillus larvae, Paenibacillaceae
AB254031, Thermobacillus composti, Paenibacillaceae
AJ005795, Thermobacillus xylanilyticus, type sp., Paenibacillaceae

Alicyclobacillaceae (20)
AJ133633, Alicyclobacillus hesperidum, Alicyclobacillaceae
AB264020, Alicyclobacillus sacchari, Alicyclobacillaceae
AB076660, Alicyclobacillus acidiphilus, Alicyclobacillaceae
AB042057, Alicyclobacillus acidoterrestris, Alicyclobacillaceae
AB264021, Alicyclobacillus fastidiosus, Alicyclobacillaceae
AB059674, Alicyclobacillus acidocaldarius subsp. rittmannii, Alicyclobacillaceae
AB084128, Alicyclobacillus sendaiensis, Alicyclobacillaceae
AJ496806, Alicyclobacillus acidocaldarius subsp. acidocaldarius, type sp., Alicyclobacillaceae
AY425985, Alicyclobacillus vulcanalis, Alicyclobacillaceae
AB264025, Alicyclobacillus macrosporangiidus, Alicyclobacillaceae
AB042059, Alicyclobacillus cycloheptanicus, Alicyclobacillaceae
AB264022, Alicyclobacillus kakegawensis, Alicyclobacillaceae
AB264024, Alicyclobacillus shizuokensis, Alicyclobacillaceae
AB042055, Alicyclobacillus herbarius, Alicyclobacillaceae
AB089843, Alicyclobacillus disulfidooxidans, Alicyclobacillaceae
Z21979, Alicyclobacillus tolerans, Alicyclobacillaceae
AB264026, Alicyclobacillus contaminans, Alicyclobacillaceae
AB089840, Alicyclobacillus pomorum, Alicyclobacillaceae
EU137838, Alicyclobacillus ferrooxydans, Alicyclobacillaceae
FM179383, Alicyclobacillus aeris, Alicyclobacillaceae

AB245375, Tumebacillus ginsengisoli, Alicyclobacillaceae

DQ444975, Tumebacillus permanentifrigoris, type sp., Alicyclobacillaceae
AJ564766, Alicyclobacillus pohliae, Alicyclobacillaceae
FN552009, Microaerobacter geothermalis, type sp., Bacillaceae
AJ242495, Thermicanus aegyptius, type sp., Unclassified Bacillales
AY753654, Caldalkalibacillus thermarum, type sp., Bacillaceae
DQ221694, Caldalkalibacillus uzonensis, Bacillaceae

Thermoactinomycetaceae (18)
AM940019, Desmospora activa, type sp., Thermoactinomycetaceae
JN006758, Marininema mesophilum, type sp., Thermoactinomycetaceae
HQ383683, Melghirimyces algeriensis, type sp., Thermoactinomycetaceae
FN665656, Kroppenstedtia eburnea, type sp., Thermoactinomycetaceae
AB239532, Mechercharimyces asporophorigenens, Thermoactinomycetaceae
AB239529, Mechercharimyces mesophilus, type sp., Thermoactinomycetaceae
AF138735, Seinonella peptonophila, type sp., Thermoactinomycetaceae
AB049939, Shimazuella kribbensis, type sp., Thermoactinomycetaceae
AJ251779, Laceyella sacchari, type sp., Thermoactinomycetaceae
FJ426598, Laceyella tengchongensis, Thermoactinomycetaceae
FJ422144, Laceyella sediminis, Thermoactinomycetaceae
AF138736, Laceyella putida, Thermoactinomycetaceae
AF138734, Thermoactinomyces intermedius, Thermoactinomycetaceae
AF138739, Thermoactinomyces vulgaris, type sp., Thermoactinomycetaceae
AF138733, Thermoflavimicrobium dichotomicum, type sp., Thermoactinomycetaceae
AB088362, Planifilum fulgidum, Thermoactinomycetaceae
DQ119659, Planifilum yunnanense, Thermoactinomycetaceae
AB088364, Planifilum fimeticola, type sp., Thermoactinomycetaceae

AB042060, Bacillus schlegelii, Bacillaceae

CP002017, Kyrpidia tusciae, type sp., Alicyclobacillaceae
AB250968, Calditerricola satsumensis, type sp., Bacillaceae
AB308475, Calditerricola yamamurae, Bacillaceae

Clostridia (609)

Clostridiaceae 1 (111)
AB018184, Eubacterium multiforme, Eubacteriaceae
AB018185, Eubacterium nitritogenes, Eubacteriaceae
AB018183, Eubacterium budayi, Eubacteriaceae
X68174, Clostridium baratii, Clostridiaceae
AB161367, Clostridium sardiniense, Clostridiaceae
AB540985, Eubacterium moniliforme, Eubacteriaceae
AJ420008, Clostridium colicanis, Clostridiaceae
X68183, Clostridium aurantibutyricum, Clostridiaceae
X71850, Clostridium chartatabidum, Clostridiaceae
X97432, Clostridium vincentii, Clostridiaceae
X75907, Clostridium paraputrificum, Clostridiaceae
AJ458418, Clostridium diolis, Clostridiaceae
Y18171, Clostridium roseum, Clostridiaceae
X68179, Clostridium beijerinckii, Clostridiaceae
U16122, Clostridium saccharoperbutylacetonicum, Clostridiaceae
 U16147, Clostridium saccharobutylicum, Clostridiaceae
X71857, Clostridium puniceum, Clostridiaceae
AJ458420, Clostridium butyricum, type sp., Clostridiaceae
AY228334, Clostridium chromiireducens, Clostridiaceae
AF092548, Clostridium gasigenes, Clostridiaceae
AJ276992, Clostridium uliginosum, Clostridiaceae
U51843, Clostridium chauvoei, Clostridiaceae
U59278, Clostridium septicum, Clostridiaceae
X98395, Clostridium isatidis, Clostridiaceae
M59091, Clostridium carnis, Clostridiaceae
Y18174, Clostridium tertium, Clostridiaceae
Y18175, Clostridium sartagoforme, Clostridiaceae
X77844, Clostridium celatum, Clostridiaceae
Y18176, Clostridium disporicum, Clostridiaceae
X76745, Clostridium quinii, Clostridiaceae
X76650, Sarcina maxima, Clostridiaceae
X76649, Sarcina ventriculi, type sp., Clostridiaceae
FR733677, Eubacterium tarantellae, Eubacteriaceae
CP000246, Clostridium perfringens , Clostridiaceae
AF069742, Clostridium frigidicarnis, Clostridiaceae
DQ196623, Clostridium hydrogeniformans, Clostridiaceae
X76740, Clostridium intestinale, Clostridiaceae
AF127023, Clostridium algidicarnis, Clostridiaceae
AF127024, Clostridium putrefaciens, Clostridiaceae
M59088, Clostridium fallax, Clostridiaceae
Y18189, Anaerobacter polyendosporus, type sp., Clostridiaceae
EU037903, Clostridium amylolyticum, Clostridiaceae
AB542932, Clostridium cadaveris, Clostridiaceae
FR749900, Acetivibrio multivorans, Ruminococcaceae
DQ852338, Proteiniclasticum ruminis, type sp., Clostridiaceae
DQ196621, Clostridium cavendishii, Clostridiaceae
X71849, Clostridium cellulovorans, Clostridiaceae
CP000673, Clostridium kluyveri, Clostridiaceae
FR733688, Clostridium ljungdahlii, Clostridiaceae
M59113, Clostridium tyrobutyricum, Clostridiaceae
DQ114945, Clostridium aciditolerans, Clostridiaceae
AM261414, Clostridium nitrophenolicum, Clostridiaceae
FR733710, Clostridium carboxidivorans, Clostridiaceae
Y18813, Clostridium drakei, Clostridiaceae
X77835, Clostridium magnum, Clostridiaceae
FR870440, Clostridium pasteurianum, Clostridiaceae
EU816420, Clostridium arbusti, Clostridiaceae
AJ237756, Clostridium acidisoli, Clostridiaceae
AJ237755, Clostridium akagii, Clostridiaceae
AE001437, Clostridium acetobutylicum , Clostridiaceae
AF270501, Clostridium felsineum, Clostridiaceae
X73439, Clostridium collagenovorans, Clostridiaceae
AY858804, Clostridium lundense, Clostridiaceae
DQ241819, Clostridium tetanomorphum, Clostridiaceae
FR749893, Clostridium malenominatum, Clostridiaceae
AJ506115, Clostridium estertheticum subsp. laramiense, Clostridiaceae
AJ506116, Clostridium frigoris, Clostridiaceae
S46734, Clostridium estertheticum subsp. estertheticum, Clostridiaceae
AJ506118, Clostridium lacusfryxellense, Clostridiaceae
AJ297443, Clostridium psychrophilum, Clostridiaceae
AJ506119, Clostridium bowmanii, Clostridiaceae
AY117755, Clostridium algoriphilum, Clostridiaceae
DQ296031, Clostridium tagluense, Clostridiaceae
EF199998, Clostridium sulfidigenes, Clostridiaceae
AY024332, Clostridium thiosulfatireducens, Clostridiaceae
AF241844, Clostridium subterminale, Clostridiaceae
X68316, Clostridium argentinense, Clostridiaceae
AM114453, Clostridium schirmacherense, Clostridiaceae
X96736, Clostridium pascui, Clostridiaceae
AF156796, Clostridium peptidivorans, Clostridiaceae
M59093, Clostridium cochlearium, Clostridiaceae
X74770, Clostridium tetani, Clostridiaceae
X79862, Clostridium acetireducens, Clostridiaceae
AB037910, Clostridium haemolyticum, Clostridiaceae
AB045606, Clostridium novyi, Clostridiaceae
X72869, Clostridium thermopalmarium, Clostridiaceae
X72868, Clostridium thermobutyricum, Clostridiaceae
DQ126679, Clostridium aestuarii, Clostridiaceae
X75272, Clostridium grantii, Clostridiaceae
AY903294, Clostridium ganghwense, Clostridiaceae
X76744, Clostridium homopropionicum, Clostridiaceae
FR733681, Ilyobacter delafieldii, Fusobacteriaceae
L37585, Clostridium botulinum, Clostridiaceae
AY533380, Eubacterium combesii, Eubacteriaceae
X68189, Clostridium sporogenes, Clostridiaceae
EF197795, Clostridium tepidiprofundi, Clostridiaceae
FR870444, Clostridium limosum, Clostridiaceae
X73448, Clostridium proteolyticum, Clostridiaceae
AB566416, Clostridium histolyticum, Clostridiaceae
X77838, Oxobacter pfennigii, type sp., Clostridiaceae
X75788, Caloramator indicus, Clostridiaceae
X99238, Thermobrachium celere, type sp., Clostridiaceae
X90488, Caloramator proteoclasticus, Clostridiaceae
AF104215, Caloramator coolhaasii, Clostridiaceae
EU409943, Caloramator australicus, Clostridiaceae
L09187, Caloramator fervidus, type sp., Clostridiaceae
GU723692, Caloramator mitchellensis, Clostridiaceae
FM244718, Caloramator boliviensis, Clostridiaceae
AF181848, Caloramator viterbiensis, Clostridiaceae
FJ481102, Fervidicella metallireducens, type sp., Clostridiaceae
Y18179, Clostridium cylindrosporum, Clostridiaceae

FR749965, Thermohydrogenium kirishiense, type sp., Syntrophomonadaceae

FR870449, Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterales
X93359, Thermoanaerobacterium aotearoense, Thermoanaerobacterales
FM999998, Thermoanaerobacterium thermostercoris, Thermoanaerobacterales
L09171, Thermoanaerobacterium thermosulfurigenes, type sp., Thermoanaerobacterales
L09172, Thermoanaerobacterium xylanolyticum, Thermoanaerobacterales
L09169, Thermoanaerobacterium saccharolyticum, Thermoanaerobacterales
AY350594, Thermoanaerobacterium aciditolerans, Thermoanaerobacterales
JF262044, Caloribacterium cisternae, type sp., Thermoanaerobacteraceae
U40229, Caldanaerobius polysaccharolyticus, Thermoanaerobacteraceae
U75993, Caldanaerobius zeae, Thermoanaerobacteraceae
EF507903, Caldanaerobius fijiensis, type sp., Thermoanaerobacteraceae
AY331143, Mahella australiensis, type sp., Thermoanaerobacterales

Lachnospiraceae (103)
Y18184, Clostridium indolis, Clostridiaceae
AF067965, Clostridium methoxybenzovorans, Clostridiaceae
AY353957, Clostridium amygdalinum, Clostridiaceae
 Y18185, Clostridium saccharolyticum, Clostridiaceae
AB075772, Clostridium sphenoides, Clostridiaceae
Y11568, Desulfotomaculum guttoideum, Peptococcaceae
X71848, Clostridium celerecrescens, Clostridiaceae
X76163, Clostridium aerotolerans, Clostridiaceae
X76739, Clostridium xylanolyticum, Clostridiaceae
AF092549, Clostridium algidixylanolyticum, Clostridiaceae
AJ311620, Clostridium hathewayi, Clostridiaceae
DQ279736, Clostridium aldenense, Clostridiaceae
DQ279737, Clostridium citroniae, Clostridiaceae
M59089, Clostridium clostridioforme, Clostridiaceae
AJ582080, Clostridium asparagiforme, Clostridiaceae
EF564277, Clostridium lavalense, Clostridiaceae
AJ508452, Clostridium bolteae, Clostridiaceae
M59112, Clostridium symbiosum, Clostridiaceae
HQ223106, Fusobacterium naviforme, Fusobacteriaceae
DQ377947, Moryella indoligenes, type sp., Lachnospiraceae
AY323228, Oribacterium sinus, type sp., Lachnospiraceae
AJ428553, Butyrivibrio hungatei, Lachnospiraceae
U37378, Butyrivibrio proteoclasticus, Lachnospiraceae
U41172, Butyrivibrio fibrisolvens, type sp., Lachnospiraceae
L04165, Clostridium aminophilum, Clostridiaceae
AB525414, Eubacterium saburreum, Eubacteriaceae
X87152, Johnsonella ignava, type sp., Lachnospiraceae
ABWN01000012, Butyrivibrio crossotus, Lachnospiraceae
X71860, Eubacterium cellulosolvens, Eubacteriaceae
AF202264, Syntrophococcus sucromutans, type sp., Lachnospiraceae
AJ505973, Marvinbryantia formatexigens, type sp., Lachnospiraceae
L76602, Ruminococcus lactaris, Ruminococcaceae
L76604, Ruminococcus torques, Ruminococcaceae
FJ611794, Ruminococcus faecis, Ruminococcaceae
AB233029, Clostridium glycyrrhizinilyticum, Clostridiaceae
EF031542, Coprococcus comes, Lachnospiraceae
X73443, Clostridium nexile, Clostridiaceae
AB023973, Clostridium hylemonae, Clostridiaceae
AF262238, Clostridium scindens, Clostridiaceae
L34619, Dorea formicigenerans, type sp., Lachnospiraceae
AJ132842, Dorea longicatena, Lachnospiraceae
AF445239, Hespellia porcina, Lachnospiraceae
AF445264, Hespellia stercorisuis, type sp., Lachnospiraceae
FR749917, Clostridium oroticum, Clostridiaceae
FR749936, Eubacterium fissicatena, Eubacteriaceae
FR749946, Eubacterium contortum, Eubacteriaceae
X94967, Ruminococcus gnavus, Ruminococcaceae
DQ100449, Lactonifactor longoviformis, type sp., Clostridiaceae
EF529620, Ruminococcus gauvreauii, Ruminococcaceae
AJ133124, Blautia luti, Unclassified Clostridiales
X85101, Ruminococcus obeum, Ruminococcaceae
EF036467, Blautia wexlerae, Unclassified Clostridiales
AB439724, Blautia glucerasea, Unclassified Clostridiales
X94965, Blautia schinkii, Unclassified Clostridiales
AB571656, Blautia coccoides, Unclassified Clostridiales
L76595, Blautia producta, Unclassified Clostridiales
AB534168, Blautia hansenii, Unclassified Clostridiales
HM626177, Blautia stercoris, Unclassified Clostridiales
X95624, Blautia hydrogenotrophica, Unclassified Clostridiales
AF445285, Robinsoniella peoriensis, type sp., Lachnospiraceae
GU233441, Roseburia cecicola, type sp., Lachnospiraceae
AJ270482, Roseburia hominis, Lachnospiraceae
AJ312385, Roseburia intestinalis, Lachnospiraceae
AY305310, Roseburia faecis, Lachnospiraceae
AJ270473, Roseburia inulinivorans, Lachnospiraceae
L34627, Eubacterium rectale, Eubacteriaceae
AF298663, Lachnobacterium bovis, type sp., Lachnospiraceae
FR733672, Eubacterium oxidoreducens, Eubacteriaceae
AF399956, Shuttleworthia satelles, type sp., Lachnospiraceae
X95893, Pseudobutyrivibrio ruminis, type sp., Lachnospiraceae
AJ428548, Pseudobutyrivibrio xylanivorans, Lachnospiraceae
DQ497994, Bacteroides galacturonicus, Bacteroidaceae
GU269544, Lactobacillus rogosae, Lactobacillaceae
L34420, Eubacterium eligens, Eubacteriaceae
FR733699, Lachnospira multipara, type sp., Lachnospiraceae
DQ925472, Howardella ureilytica, type sp., Unclassified Clostridiales
AF126687, Clostridium fimetarium, Clostridiaceae
M59083, Acetitomaculum ruminis, type sp., Lachnospiraceae
AB038359, Coprococcus catus, Lachnospiraceae
ABVQ01000036, Bacteroides pectinophilus, Bacteroidaceae
X87151, Catonella morbi, type sp., Lachnospiraceae
AJ270487, Anaerostipes caccae, type sp., Lachnospiraceae
FR749932, Eubacterium hadrum, Eubacteriaceae
FJ947528, Anaerostipes butyraticus, Lachnospiraceae
FR749897, Acetivibrio ethanolgignens, Ruminococcaceae
GU269550, Eubacterium uniforme, Eubacteriaceae
L34421, Eubacterium ventriosum, Eubacteriaceae
AJ272036, Parasporobacterium paucivorans, type sp., Lachnospiraceae
AF116854, Sporobacterium olearium, type sp., Lachnospiraceae
AY494606, Clostridium jejuense, Clostridiaceae
AF116920, Clostridium xylanovorans, Clostridiaceae
X73436, Clostridium aminovalericum, Clostridiaceae
CP000885, Clostridium phytofermentans, Clostridiaceae
X71853, Clostridium populeti, Clostridiaceae
L34418, Clostridium herbivorans, Clostridiaceae
X77839, Clostridium polysaccharolyticum, Clostridiaceae
AY534872, Anaerosporobacter mobilis, type sp., Clostridiaceae
L34628, Eubacterium xylanophilum, Eubacteriaceae
L34621, Eubacterium hallii, Eubacteriaceae
AB008552, Eubacterium ruminantium, Eubacteriaceae
EF031543, Coprococcus eutactus, type sp., Lachnospiraceae
EF382648, Cellulosilyticum ruminicola, Lachnospiraceae
X71851, Cellulosilyticum lentocellum, Lachnospiraceae

HQ020487, Defluviitalea saccharophila, type sp., Defluviitaleaceae

GQ922846, Natranaerovirga pectinivora, Unclassified Clostridiales
GQ863487, Natranaerovirga hydrolytica, type sp., Unclassified Clostridiales
X76746, Clostridium neopropionicum, Clostridiaceae
X77841, Clostridium propionicum, Clostridiaceae
AY033434, Clostridium lactatifermentans, Clostridiaceae
X76748, Clostridium colinum, Clostridiaceae
DQ117465, Gracilibacter thermotolerans, type sp., Gracilibacteraceae
AB186360, Lutispora thermophila, type sp., Clostridiaceae
FR749980, Acetomicrobium faecale, Bacteroidaceae
AB450762, Caldicoprobacter oshimai, type sp., Caldicoprobacteraceae
GU216701, Caldicoprobacter algeriensis, Caldicoprobacteraceae
AB490809, Christensenella minuta, type sp., Christensenellaceae
 Peptostreptococcaceae (29)
AY326462, Peptostreptococcus anaerobius, type sp., Peptostreptococcaceae
DQ160208, Peptostreptococcus stomatis, Peptostreptococcaceae
AY167952, Peptostreptococcus russellii, Peptostreptococcaceae
AB023970, Clostridium hiranonis, Clostridiaceae
AB075770, Clostridium difficile, Clostridiaceae
FR733662, Clostridium mangenotii, Clostridiaceae
X73447, Clostridium irregulare, Clostridiaceae
X76750, Clostridium glycolicum, Clostridiaceae
FR733682, Clostridium mayombei, Clostridiaceae
AY438672, Clostridium bartlettii, Clostridiaceae
M59107, Clostridium lituseburense, Clostridiaceae
AB075769, Clostridium bifermentans, Clostridiaceae
AB542933, Clostridium ghonii, Clostridiaceae
AB075771, Clostridium sordellii, Clostridiaceae
FR749984, Eubacterium tenue, Eubacteriaceae
AY245527, Tepidibacter formicigenes, Peptostreptococcaceae
AY158079, Tepidibacter thalassicus, type sp., Peptostreptococcaceae
GQ231514, Tepidibacter mesophilus, Peptostreptococcaceae
Z69929, Clostridium paradoxum, Clostridiaceae
FR749954, Clostridium thermoalcaliphilum, Clostridiaceae
AY682207, Sporacetigenium mesophilum, type sp., Peptostreptococcaceae
GU269551, Eubacterium yurii subsp. yurii, Eubacteriaceae
AY533381, Eubacterium yurii subsp. margaretiae, Eubacteriaceae
AY533382, Eubacterium yurii subsp. schtitka, Eubacteriaceae
AF537211, Filifactor villosus, type sp., Peptostreptococcaceae
AF450134, Proteocatella sphenisci, type sp., Unclassified Clostridiales
GU562448, Acetoanaerobium noterae, type sp., Unclassified Clostridiales
X77845, Clostridium litorale, Clostridiaceae
AF071416, Eubacterium acidaminophilum, Eubacteriaceae

Clostridiaceae 2 (15)
Y18183, Clostridium aceticum, Clostridiaceae
X77836, Clostridium formicaceticum, Clostridiaceae
AB201750, Anaerovirgula multivorans, type sp., Unclassified Clostridiales
EU878275, Natronincola ferrireducens, Clostridiaceae
EF382661, Natronincola peptidivorans, Clostridiaceae
Y16716, Natronincola histidinovorans, type sp., Clostridiaceae
AF373919, Tindallia californiensis, Clostridiaceae
Y15626, Tindallia magadiensis, type sp., Clostridiaceae
DQ234901, Tindallia texcoconensis, Clostridiaceae
AF522323, Anoxynatronum sibiricum, type sp., Clostridiaceae
DQ250645, Alkaliphilus oremlandii, Clostridiaceae
EU627628, Alkaliphilus halophilus, Clostridiaceae
AF467248, Alkaliphilus crotonatoxidans, Clostridiaceae
EF382660, Alkaliphilus peptidifermentans, Clostridiaceae
AB037677, Alkaliphilus transvaalensis, type sp., Clostridiaceae

Incertae Sedis XIII (14)

U13037, Eubacterium minutum, Eubacteriaceae
Z36274, Eubacterium nodatum, Eubacteriaceae
AJ310135, Eubacterium pyruvativorans, Eubacteriaceae
U13039, Eubacterium infirmum, Eubacteriaceae
AJ006963, Eubacterium sulci, Eubacteriaceae
AB037874, Mogibacterium diversum, Unclassified Clostridiales
AB037875, Mogibacterium neglectum, Unclassified Clostridiales
AB021702, Mogibacterium vescum, Unclassified Clostridiales
Z36296, Mogibacterium timidum, Unclassified Clostridiales
AB021701, Mogibacterium pumilum, type sp., Unclassified Clostridiales
Z36272, Eubacterium brachy, Eubacteriaceae
AJ251215, Anaerovorax odorimutans, type sp., Unclassified Clostridiales
U65987, Eubacterium saphenum, Eubacteriaceae
AF016691, Acidaminobacter hydrogenoformans, type sp., Unclassified Clostridiales

Incertae Sedis XII (3)

AF050099, Fusibacter paucivorans, type sp., Unclassified Clostridiales
FR851323, Fusibacter tunisiensis, Unclassified Clostridiales
AY272039, Guggenheimella bovis, type sp., Unclassified Clostridiales

Clostridiaceae 4 (5)
DQ643978, Geosporobacter subterraneus, type sp., Clostridiaceae
EU443727, Thermotalea metallivorans, type sp., Clostridiaceae
AJ320233, Caminicella sporogenes, type sp., Clostridiaceae
AF458779, Clostridium caminithermale, Clostridiaceae
X77837, Clostridium halophilum, Clostridiaceae

FR749894, Clostridium purinilyticum, Clostridiaceae

L34612, Eubacterium angustum, Eubacteriaceae
EF116488, Proteiniborus ethanoligenes, type sp., Unclassified Clostridiales

Incertae Sedis XI (35)

AF542232, Anaerococcus prevotii, type sp., Unclassified Clostridiales
AF542234, Anaerococcus tetradius, Unclassified Clostridiales
Y07841, Anaerococcus octavius, Unclassified Clostridiales
AF542233, Anaerococcus lactolyticus, Unclassified Clostridiales
DQ911243, Anaerococcus murdochii, Unclassified Clostridiales
ABXA01000039, Anaerococcus hydrogenalis, Unclassified Clostridiales
AF542229, Anaerococcus vaginalis, Unclassified Clostridiales
EU483153, Murdochiella asaccharolytica, type sp., Unclassified Clostridiales
X69837, Helcococcus kunzii, type sp., Unclassified Clostridiales
Y16279, Helcococcus ovis, Unclassified Clostridiales
AJ579914, Helcococcus sueciensis, Unclassified Clostridiales
AF542227, Finegoldia magna, type sp., Unclassified Clostridiales
AB038361, Gallicola barnesae, type sp., Unclassified Clostridiales
AY323523, Parvimonas micra, type sp., Unclassified Clostridiales
DQ911241, Peptoniphilus gorbachii, Unclassified Clostridiales
Y07839, Peptoniphilus harei, Unclassified Clostridiales
DQ911242, Peptoniphilus olsenii, Unclassified Clostridiales
AF542230, Peptoniphilus lacrimalis, Unclassified Clostridiales
AB298735, Anaerosphaera aminiphila, type sp., Peptostreptococcaceae
AF542228, Peptoniphilus asaccharolyticus, type sp., Unclassified Clostridiales
AY153431, Peptoniphilus indolicus, Unclassified Clostridiales
GU440754, Peptoniphilus methioninivorax, Unclassified Clostridiales
Y07840, Peptoniphilus ivorii, Unclassified Clostridiales
AB547639, Bacteroides coagulans, Bacteroidaceae
EF522948, Tepidimicrobium xylanilyticum, Clostridiaceae
AY656718, Tepidimicrobium ferriphilum, type sp., Clostridiaceae
Z69293, Clostridium ultunense, Clostridiaceae
X80227, Tissierella creatinophila, Unclassified Clostridiales
X80832, Tissierella praeacuta, type sp., Unclassified Clostridiales
FR749955, Tissierella creatinini, Unclassified Clostridiales
AY353956, Soehngenia saccharolytica, type sp., Unclassified Clostridiales
AF358114, Sporanaerobacter acetigenes, type sp., Unclassified Clostridiales
 L11305, Sedimentibacter hydroxybenzoicus, type sp., Unclassified Clostridiales
AJ404680, Sedimentibacter saalensis, Unclassified Clostridiales
AB218661, Dethiosulfatibacter aminovorans, type sp., Unclassified Clostridiales

Clostridiaceae 3 (4)
EF026082, Clostridiisalibacter paucivorans, type sp., Clostridiaceae
EU567322, Sporosalibacterium faouarense, type sp., Clostridiaceae
AF113543, Thermohalobacter berrensis, type sp., Clostridiaceae
AJ272422, Caloranaerobacter azorensis, type sp., Clostridiaceae

AY176772, Garciella nitratireducens, type sp., Eubacteriaceae

Eubacteriaceae (16)
X96958, Acetobacterium paludosum, Eubacteriaceae
AJ297449, Acetobacterium tundrae, Eubacteriaceae
X96960, Acetobacterium bakii, Eubacteriaceae
X96959, Acetobacterium fimetarium, Eubacteriaceae
X96956, Acetobacterium carbinolicum, Eubacteriaceae
X96957, Acetobacterium malicum, Eubacteriaceae
X96954, Acetobacterium woodii, type sp., Eubacteriaceae
X96955, Acetobacterium wieringae, Eubacteriaceae
AF073898, Eubacterium aggregans, Eubacteriaceae
M23927, Eubacterium barkeri, Eubacteriaceae
AB036759, Pseudoramibacter alactolyticus, type sp., Eubacteriaceae
X96961, Eubacterium callanderi, Eubacteriaceae
M59120, Eubacterium limosum, type sp., Eubacteriaceae
AY312403, Alkalibacter saccharofermentans, type sp., Eubacteriaceae
FJ438469, Alkalibaculum bacchi, type sp., Eubacteriaceae
AJ518871, Anaerofustis stercorihominis, type sp., Eubacteriaceae

Incertae Sedis XIV (3)

AY064217, Anaerobranca californiensis, Unclassified Clostridiales
EF190921, Anaerobranca zavarzinii, Unclassified Clostridiales
AF203703, Anaerobranca gottschalkii, Unclassified Clostridiales

Ruminococcaceae (48)
AJ305238, Clostridium leptum, Clostridiaceae
X66002, Clostridium sporosphaeroides, Clostridiaceae
L76600, Ruminococcus bromii, Ruminococcaceae
HM037995, Eubacterium coprostanoligenes, Eubacteriaceae
L09177, Clostridium cellulosi, Clostridiaceae
AY295777, Ethanoligenens harbinense, type sp., Ruminococcaceae
GU562446, Gemmiger formicilis, type sp., Hyphomicrobiaceae
AJ518869, Subdoligranulum variabile, type sp., Ruminococcaceae
AJ413954, Faecalibacterium prausnitzii, type sp., Ruminococcaceae
X98011, Anaerofilum agile, Ruminococcaceae
X97852, Anaerofilum pentosovorans, type sp., Ruminococcaceae
AJ315980, Anaerotruncus colihominis, type sp., Ruminococcaceae
EU158190, Hydrogenoanaerobacterium saccharovorans, type sp., Ruminococcaceae
AY487928, Acetanaerobacterium elongatum, type sp., Ruminococcaceae
L76596, Ruminococcus callidus, Ruminococcaceae
L76603, Ruminococcus flavefaciens, type sp., Ruminococcaceae
AJ515913, Ruminococcus champanellensis, Ruminococcaceae
L76598, Ruminococcus albus, Ruminococcaceae
Y18181, Clostridium methylpentosum, Clostridiaceae
L34625, Eubacterium siraeum, Eubacteriaceae
AY136666, Pseudoflavonifractor capillosus, type sp., Unclassified Clostridiales
AY724678, Flavonifractor plautii, type sp., Unclassified Clostridiales
X81125, Clostridium viride, Clostridiaceae
AB238598, Oscillibacter valericigenes, type sp., Oscillospiraceae
AF167711, Papillibacter cinnamivorans, type sp., Ruminococcaceae
Z49863, Sporobacter termitidis, type sp., Ruminococcaceae
EU410376, Butyricicoccus pullicaecorum, type sp., Clostridiaceae
L34618, Eubacterium desmolans, Eubacteriaceae
X71847, Clostridium cellulolyticum, Clostridiaceae
X71852, Clostridium papyrosolvens, Clostridiaceae
FR749966, Clostridium hungatei, Clostridiaceae
AB267266, Clostridium sufflavum, Clostridiaceae
X71856, Clostridium cellobioparum, Clostridiaceae
FR733680, Clostridium termitidis, Clostridiaceae
Y18180, Clostridium thermosuccinogenes, Clostridiaceae
L35517, Bacteroides cellulosolvens, Bacteroidaceae
L35516, Acetivibrio cellulolyticus, type sp., Ruminococcaceae
X71846, Clostridium aldrichii, Clostridiaceae
AY959944, Clostridium alkalicellulosi, Clostridiaceae
AB186359, Clostridium clariflavum, Clostridiaceae
CP000568, Clostridium thermocellum , Clostridiaceae
AB125279, Clostridium straminisolvens, Clostridiaceae
AY949857, Saccharofermentans acetigenes, type sp., Clostridiaceae
AJ575187, Fastidiosipila sanguinis, type sp., Ruminococcaceae
X72870, Clostridium stercorarium subsp. thermolacticum, Clostridiaceae
AF266461, Clostridium stercorarium subsp. leptospartum, Clostridiaceae
AJ310082, Clostridium stercorarium subsp. stercorarium, Clostridiaceae
AB221372, Clostridium caenicola, Clostridiaceae

AJ251214, Pelospora glutarica, type sp., Syntrophomonadaceae

AB274039, Syntrophomonas palmitatica, Syntrophomonadaceae
AY290767, Syntrophomonas curvata, Syntrophomonadaceae
AF022249, Syntrophomonas sapovorans, Syntrophomonadaceae
DQ666175, Syntrophomonas wolfei subsp. saponavida, Syntrophomonadaceae
DQ898277, Syntrophomonas zehnderi, Syntrophomonadaceae
DQ288691, Syntrophomonas cellicola, Syntrophomonadaceae
CP000448, Syntrophomonas wolfei subsp. wolfei, type sp., Syntrophomonadaceae
AY536889, Syntrophomonas erecta, Syntrophomonadaceae
X99980, Thermosyntropha lipolytica, type sp., Syntrophomonadaceae
HM807481, Thermosyntropha tengcongensis, Syntrophomonadaceae
AB021305, Syntrophothermus lipocalidus, type sp., Syntrophomonadaceae
AY538171, Desulfitibacter alkalitolerans, type sp., Peptococcaceae
FJ788525, Desulfitispora alkaliphila, type sp., Peptococcaceae

Veillonellaceae (73)
GQ422716, Selenomonas artemidis, Veillonellaceae
AF287799, Selenomonas noxia, Veillonellaceae
AF287803, Selenomonas flueggei, Veillonellaceae
AF287802, Selenomonas infelix, Veillonellaceae
AF287801, Selenomonas dianae, Veillonellaceae
AJ010963, Centipeda periodontii, type sp., Veillonellaceae
Y09434, Schwartzia succinivorans, type sp., Veillonellaceae
AF479674, Mitsuokella jalaludinii, Veillonellaceae
X81878, Mitsuokella multacida, type sp., Veillonellaceae
M62702, Selenomonas ruminantium subsp. ruminantium, Veillonellaceae
AB003379, Selenomonas ruminantium subsp. lactilytica, Veillonellaceae
EF139191, Selenomonas bovis, Veillonellaceae
AF001901, Selenomonas lipolytica, Veillonellaceae
 AF287793, Selenomonas sputigena, type sp., Veillonellaceae
AB034191, Anaerovibrio lipolyticus, type sp., Veillonellaceae
AB300988, Megamonas funiformis, Veillonellaceae
EU346729, Megamonas rupellensis, Veillonellaceae
AJ420107, Megamonas hypermegale, type sp., Veillonellaceae
FR870446, Pectinatus cerevisiiphilus, type sp., Veillonellaceae
DQ223731, Pectinatus haikarae, Veillonellaceae
AY428574, Pectinatus portalensis, Veillonellaceae
Y18190, Propionispira arboris, type sp., Veillonellaceae
DQ217599, Zymophilus raffinosivorans, type sp., Veillonellaceae
AJ010960, Anaerosinus glycerini, type sp., Veillonellaceae
AJ010962, Dendrosporobacter quercicolus, type sp., Veillonellaceae
AJ508927, Propionispora hippei, Veillonellaceae
AJ279802, Propionispora vibrioides, type sp., Veillonellaceae
DQ145536, Pelosinus fermentans, type sp., Veillonellaceae
AM258975, Pelosinus propionicus, type sp., Veillonellaceae
JF750003, Pelosinus defluvii, Veillonellaceae
AJ010964, Acetonema longum, type sp., Veillonellaceae
AF071415, Anaeromusa acidaminophila, type sp., Veillonellaceae
AJ010961, Anaeroarcus burkinensis, type sp., Veillonellaceae
AF548373, Allisonella histaminiformans, type sp., Veillonellaceae
X82500, Dialister pneumosintes, type sp., Veillonellaceae
AY162469, Dialister invisus, Veillonellaceae
AB370249, Dialister succinatiphilus, Veillonellaceae
AY850119, Dialister propionicifaciens, Veillonellaceae
AF473837, Dialister micraerophilus, Veillonellaceae
FJ715930, Negativicoccus succinicivorans, type sp., Veillonellaceae
DQ223730, Megasphaera paucivorans, Veillonellaceae
DQ223729, Megasphaera sueciensis, Veillonellaceae
L37040, Megasphaera cerevisiae, Veillonellaceae
U95027, Megasphaera elsdenii, type sp., Veillonellaceae
AF338413, Anaeroglobus geminatus, type sp., Veillonellaceae
AF473834, Megasphaera micronuciformis, Veillonellaceae
EF185167, Veillonella denticariosi, Veillonellaceae
AY514996, Veillonella rodentium, Veillonellaceae
AF439641, Veillonella atypica, Veillonellaceae
AY995767, Veillonella parvula, type sp., Veillonellaceae
EF108443, Veillonella rogosae, Veillonellaceae
AF439639, Veillonella dispar, Veillonellaceae
AY355140, Veillonella caviae, Veillonellaceae
AF473836, Veillonella montpellierensis, Veillonellaceae
AF186072, Veillonella criceti, Veillonellaceae
AY355138, Veillonella ratti, Veillonellaceae
EU096495, Veillonella magna, Veillonellaceae
AAWL01000022, Thermosinus carboxydivorans, type sp., Veillonellaceae
FJ169187, Sporolituus thermophilus, type sp., Veillonellaceae
FR749939, Sporomusa paucivorans, Veillonellaceae
AJ279801, Sporomusa sphaeroides, type sp., Veillonellaceae
AJ279798, Sporomusa acidovorans, Veillonellaceae
AJ279799, Sporomusa malonica, Veillonellaceae
AJ279800, Sporomusa ovata, Veillonellaceae
Y09976, Sporomusa silvacetica, Veillonellaceae
AJ506191, Sporomusa aerivorans, Veillonellaceae
AM158322, Sporomusa rhizae, Veillonellaceae
X72865, Phascolarctobacterium faecium, type sp., Acidaminococcaceae
X81137, Succiniclasticum ruminis, type sp., Acidaminococcaceae
AB490811, Phascolarctobacterium succinatutens, Acidaminococcaceae
X78017, Acidaminococcus fermentans, type sp., Acidaminococcaceae
AF473835, Acidaminococcus intestini, Acidaminococcaceae
AJ006980, Succinispira mobilis, type sp., Acidaminococcaceae

Halobacteroidaceae (15)
L37423, Halobacteroides elegans, Halobacteroidaceae
Y14212, Halanaerobacter salinarius, Halobacteroidaceae
X89075, Halanaerobacter lacunarum, Halobacteroidaceae
GU265900, Halanaerobacter jeridensis, Halobacteroidaceae
X89074, Halobacteroides halobius, type sp., Halobacteroidaceae
EU327343, Halanaerobaculum tunisiense, type sp., Halobacteroidaceae
AY014858, Halonatronum saccharophilum, type sp., Halobacteroidaceae
AF152595, Orenia sivashensis, Halobacteroidaceae
X89073, Orenia marismortui, type sp., Halobacteroidaceae
Y18485, Orenia salinaria, Halobacteroidaceae
X95817, Natroniella acetigena, type sp., Halobacteroidaceae
GU452711, Natroniella sulfidigena, Halobacteroidaceae
AF310247, Selenihalanaerobacter shriftii, type sp., Halobacteroidaceae
HQ828140, Fuchsiella alkaliacetigena, type sp., Halobacteroidaceae
CP002105, Acetohalobium arabaticum, type sp., Halobacteroidaceae

Halanaerobiaceae (12)
X89071, Halanaerobium acetethylicum, Halanaerobiaceae
U86446, Halanaerobium kushneri, Halanaerobiaceae
AB022034, Halanaerobium praevalens, type sp., Halanaerobiaceae
X89070, Halanaerobium saccharolyticum subsp. senegalense, Halanaerobiaceae
X89069, Halanaerobium saccharolyticum subsp. saccharolyticum, Halanaerobiaceae
U76632, Halanaerobium congolense, Halanaerobiaceae
AB023308, Halanaerobium fermentans, Halanaerobiaceae
L39787, Halanaerobium lacusrosei, Halanaerobiaceae
L22890, Halanaerobium salsuginis, Halanaerobiaceae
X89072, Halocella cellulosilytica, type sp., Halanaerobiaceae
AY965613, Halarsenatibacter silvermanii, type sp., Halanaerobiaceae
L22016, Halothermothrix orenii, type sp., Halanaerobiaceae

Cyanobacteria (9)
AB115964, Crinalium epipsammum, type sp., Oscillatoriales
HM748317, Iphinoe spelaeobios, type sp., Stigonematales
HM748318, Loriellopsis cavernicola, type sp., Stigonematales
Y18791, Halospirulina tapeticola, type sp., Oscillatoriales
EF126149, Rubidibacter lacunae, type sp., Chroococcales
AB045960, Planktothricoides raciborskii, type sp., Oscillatoriales

Prochlorococcaceae (2)
AF180967, Prochlorococcus marinus subsp. pastoris, Prochlorococcaceae
AE017126, Prochlorococcus marinus subsp. marinus , type sp., Prochlorococcaceae

AM709625, Prochlorothrix hollandica, type sp., Prochlorotrichaceae

HM038000, Vampirovibrio chlorellavorus, type sp., Bdellovibrionaceae

AY603000, Thermincola carboxydiphila, type sp., Peptococcaceae
AY631277, Thermincola ferriacetica, Peptococcaceae
Y11571, Desulfosporosinus hippei, Peptococcaceae
AF076527, Desulfosporosinus meridiei, Peptococcaceae
AJ493051, Desulfosporosinus auripigmenti, Peptococcaceae
AJ582757, Desulfosporosinus lacus, Peptococcaceae
DQ117470, Desulfosporosinus youngiae, Peptococcaceae
 FJ951625, Desulfosporosinus acidiphilus, Peptococcaceae
Y11570, Desulfosporosinus orientis, type sp., Peptococcaceae
CP001336, Desulfitobacterium hafniense, Peptococcaceae
CP001336, Desulfitobacterium hafniense, Peptococcaceae
CP001336, Desulfitobacterium hafniense, Peptococcaceae
U68528, Desulfitobacterium chlororespirans, Peptococcaceae
L28946, Desulfitobacterium dehalogenans, type sp., Peptococcaceae
AF297871, Desulfitobacterium metallireducens, Peptococcaceae
EU711071, Desulfitobacterium aromaticivorans , Peptococcaceae
U84497, Dehalobacter restrictus, type sp., Peptococcaceae

Heliobacteriaceae (8)
AB100837, Heliobacterium gestii, Heliobacteriaceae
CP000930, Heliobacterium modesticaldum, Heliobacteriaceae
AF249678, Heliobacterium sulfidophilum, Heliobacteriaceae
AF249679, Heliobacterium undosum, Heliobacteriaceae
AB100835, Heliobacillus mobilis, type sp., Heliobacteriaceae
M11212, Heliobacterium chlorum, type sp., Heliobacteriaceae
AF249680, Heliorestis baculata, Heliobacteriaceae
AF079102, Heliorestis daurensis, type sp., Heliobacteriaceae

Peptococcaceae 1 (2)
Y18214, Desulfonispora thiosulfatigenes, type sp., Peptococcaceae
X55797, Peptococcus niger, type sp., Peptococcaceae

AY084078, Desulfotomaculum solfataricum, Peptococcaceae

DQ208688, Desulfotomaculum thermosubterraneum, Peptococcaceae
Y11569, Desulfotomaculum kuznetsovii, Peptococcaceae
M96665, Desulfotomaculum australicum, Peptococcaceae
U33455, Desulfotomaculum thermocisternum, Peptococcaceae
DQ208689, Desulfovirgula thermocuniculi, type sp., Thermoanaerobacteraceae
AJ294429, Desulfotomaculum thermobenzoicum subsp. thermobenzoicum, Peptococcaceae
AY007190, Desulfotomaculum thermobenzoicum subsp. thermosyntrophicum, Peptococcaceae
Y11573, Desulfotomaculum thermoacetoxidans, Peptococcaceae
AY548776, Desulfurispora thermophila, type sp., Peptococcaceae
AB232785, Pelotomaculum isophthalicicum, Peptococcaceae
AB091323, Pelotomaculum terephthalicicum, Peptococcaceae
AY327251, Cryptanaerobacter phenolicus, type sp., Peptococcaceae
X91170, Pelotomaculum schinkii, Peptococcaceae
AB154390, Pelotomaculum propionicicum, Peptococcaceae
AB035723, Pelotomaculum thermopropionicum, type sp., Peptococcaceae
Y14845, Sporotomaculum hydroxybenzoicum, type sp., Peptococcaceae
AB076610, Sporotomaculum syntrophicum, Peptococcaceae
AF168365, Desulfotomaculum sapomandens, Peptococcaceae
Z26315, Desulfotomaculum thermosapovorans, Peptococcaceae
Y11576, Desulfotomaculum gibsoniae, Peptococcaceae
AY548778, Desulfotomaculum alcoholivorax, Peptococcaceae
DQ148942, Desulfotomaculum arcticum, Peptococcaceae
AJ294428, Desulfotomaculum geothermicum, Peptococcaceae
AY961415, Desulfotomaculum carboxydivorans, Peptococcaceae
X62176, Desulfotomaculum nigrificans, type sp., Peptococcaceae
EF081293, Desulfotomaculum hydrothermale, Peptococcaceae
AF053929, Desulfotomaculum putei, Peptococcaceae
X98407, Desulfotomaculum aeronauticum, Peptococcaceae
Y11572, Desulfotomaculum ruminis, Peptococcaceae
AF097024, Desulfotomaculum alkaliphilum, Peptococcaceae
U88891, Desulfotomaculum halophilum, Peptococcaceae
Y11566, Desulfotomaculum acetoxidans, Peptococcaceae

Incertae Sedis XVI (3)

AY673988, Carboxydocella sporoproducens, Unclassified Clostridiales
AY061974, Carboxydocella thermautotrophica, type sp., Unclassified Clostridiales
GU584133, Carboxydocella manganica, Unclassified Clostridiales

Thermolithobacteria (2)
DQ095862, Thermolithobacter carboxydivorans, Thermolithobacteraceae
AF282253, Thermolithobacter ferrireducens, type sp., Thermolithobacteraceae

Natranaerobiaceae (3)
EU338490, Natranaerobius trueperi, Natranaerobiaceae
EU338489, Natronovirga wadinatrunensis, type sp., Natranaerobiaceae
DQ417202, Natranaerobius thermophilus, type sp., Natranaerobiaceae

EF422412, Dethiobacter alkaliphilus, type sp., Syntrophomonadaceae

EF679212, Sulfobacillus benefaciens, Unclassified Clostridiales

AB089844, Sulfobacillus thermosulfidooxidans, type sp., Unclassified Clostridiales
AY079150, Sulfobacillus sibiricus, Unclassified Clostridiales
DQ124681, Sulfobacillus thermotolerans, Unclassified Clostridiales
AB089842, Sulfobacillus acidophilus, Unclassified Clostridiales
AP006840, Symbiobacterium thermophilum , type sp., Unclassified Clostridiales
AF321086, Gelria glutamica, type sp., Thermoanaerobacteraceae
U76363, Carboxydothermus ferrireducens, Thermoanaerobacteraceae
CP000141, Carboxydothermus hydrogenoformans, type sp., Thermoanaerobacteraceae
EF542810, Carboxydothermus siderophilus, Thermoanaerobacteraceae
GQ324698, Carboxydothermus islandicus, Thermoanaerobacteraceae
AB573433, Carboxydothermus pertinax, Thermoanaerobacteraceae
AB573432, Carboxydothermus pertinax, Thermoanaerobacteraceae
AB573431, Carboxydothermus pertinax, Thermoanaerobacteraceae
AB573434, Carboxydothermus pertinax, Thermoanaerobacteraceae
EU386162, Syntrophaceticus schinkii, type sp., Thermoanaerobacterales
AB020336, Thermacetogenium phaeum, type sp., Thermoanaerobacteraceae
U82327, Moorella glycerini, Thermoanaerobacteraceae
AF487538, Moorella mulderi, Thermoanaerobacteraceae
GQ872425, Moorella humiferrea, Thermoanaerobacteraceae
L09168, Moorella thermoautotrophica, Thermoanaerobacteraceae
AY656675, Moorella thermoacetica, type sp., Thermoanaerobacteraceae

Thermoanaerobacteraceae (24)
L09163, Thermoanaerobacter acetoethylicus, Thermoanaerobacteraceae
L09162, Thermoanaerobacter ethanolicus, type sp., Thermoanaerobacteraceae
CP000924, Thermoanaerobacter pseudethanolicus, Thermoanaerobacteraceae
L09161, Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacteraceae
Y16940, Thermoanaerobacter sulfurophilus, Thermoanaerobacteraceae
X92513, Thermoanaerobacter wiegelii, Thermoanaerobacteraceae
AF120479, Thermoanaerobacter siderophilus, Thermoanaerobacteraceae
L09160, Thermoanaerobacter kivui, Thermoanaerobacteraceae
L09166, Thermoanaerobacter brockii subsp. finnii, Thermoanaerobacteraceae
L09165, Thermoanaerobacter brockii subsp. brockii, Thermoanaerobacteraceae
U14330, Thermoanaerobacter brockii subsp. lactiethylicus, Thermoanaerobacteraceae
CP000924, Thermoanaerobacter pseudethanolicus, Thermoanaerobacteraceae
Y11279, Thermoanaerobacter mathranii subsp. mathranii, Thermoanaerobacteraceae
AY701758, Thermoanaerobacter mathranii subsp. alimentarius, Thermoanaerobacteraceae
AJ250846, Thermoanaerobacter italicus, Thermoanaerobacteraceae
L09167, Thermoanaerobacter thermocopriae, Thermoanaerobacteraceae
AF234164, Thermoanaerobacter sulfurigignens, Thermoanaerobacteraceae
 EF530067, Thermoanaerobacter uzonensis, Thermoanaerobacteraceae
ABXP01000185, Caldanaerobacter subterraneus subsp. pacificus, Thermoanaerobacteraceae
AE008691, Caldanaerobacter subterraneus subsp. tengcongensis, Thermoanaerobacteraceae
AF212925, Caldanaerobacter subterraneus subsp. yonseiensis, Thermoanaerobacteraceae
EF195126, Caldanaerobacter uzonensis, Thermoanaerobacteraceae
CP001785, Ammonifex degensii, type sp., Thermoanaerobacteraceae
EF554597, Ammonifex thiophilus, Thermoanaerobacteraceae

EF530069, Caldanaerovirga acetigignens, type sp., Thermoanaerobacterales

EU370564, Thermovorax subterraneus, type sp., Thermoanaerobacterales
EU443728, Fervidicola ferrireducens, type sp., Syntrophomonadaceae
AY703479, Thermosediminibacter litoriperuensis, Thermoanaerobacterales
AY703478, Thermosediminibacter oceani, type sp., Thermoanaerobacterales
AY033493, Thermovenabulum ferriorganovorum, type sp., Thermoanaerobacterales
EU443729, Thermovenabulum gondwanense, Thermoanaerobacterales
AB106353, Tepidanaerobacter syntrophicus, type sp., Thermoanaerobacteraceae

Dictyoglomi (2)
X69194, Dictyoglomus thermophilum, type sp., Dictyoglomaceae
CP001251, Dictyoglomus turgidum, Dictyoglomaceae

AB062280, Thermanaeromonas toyohensis, type sp., Thermoanaerobacteraceae

AY772476, Caldicellulosiruptor acetigenus, Thermoanaerobacterales
AJ004811, Caldicellulosiruptor kristjanssonii, Thermoanaerobacterales
X82842, Caldicellulosiruptor lactoaceticus, Thermoanaerobacterales
L09178, Caldicellulosiruptor saccharolyticus, type sp., Thermoanaerobacterales
U80596, Caldicellulosiruptor owensensis, Thermoanaerobacterales
EF100908, Caldicellulosiruptor hydrothermalis, Thermoanaerobacterales
CP001393, Caldicellulosiruptor bescii, Thermoanaerobacterales
EF100909, Caldicellulosiruptor kronotskyensis, Thermoanaerobacterales
AB061441, Thermaerobacter nagasakiensis, Unclassified Clostridiales
AF343566, Thermaerobacter subterraneus, Unclassified Clostridiales
AY936496, Thermaerobacter litoralis, Unclassified Clostridiales
AB454087, Thermaerobacter composti, Unclassified Clostridiales
AB011495, Thermaerobacter marianensis, type sp., Unclassified Clostridiales

Aquificae (28)

Aquificaceae (11)
AB120294, Hydrogenivirga caldilitoris, type sp., Aquificaceae
AB235314, Hydrogenivirga okinawensis, Aquificaceae
M83548, Aquifex pyrophilus, type sp., Aquificaceae
AJ278895, Thermocrinis albus, Aquificaceae
AJ005640, Thermocrinis ruber, type sp., Aquificaceae
AM260555, Thermocrinis minervae, Aquificaceae
Z30242, Hydrogenobacter hydrogenophilus, Aquificaceae
CP002221, Hydrogenobacter thermophilus, type sp., Aquificaceae
AB026268, Hydrogenobacter subterraneus, Aquificaceae
GU233444, Thermothrix azorensis, Burkholderiaceae
D16296, Hydrogenobaculum acidophilum, type sp., Aquificaceae

Hydrogenothermaceae (9)
AF528192, Sulfurihydrogenibium azorense, Hydrogenothermaceae
AM259502, Sulfurihydrogenibium rodmanii, Hydrogenothermaceae
AM778960, Sulfurihydrogenibium kristjanssonii, Hydrogenothermaceae
AB071324, Sulfurihydrogenibium subterraneum, type sp., Hydrogenothermaceae
AY686713, Sulfurihydrogenibium yellowstonense, Hydrogenothermaceae
DQ989208, Venenivibrio stagnispumantis, type sp., Hydrogenothermaceae
AF385630, Persephonella guaymasensis, Hydrogenothermaceae
AF188332, Persephonella marina, type sp., Hydrogenothermaceae
AB086419, Persephonella hydrogeniphila, Hydrogenothermaceae

Desulfurobacteriaceae (7)
AY263403, Thermovibrio ammonificans, Desulfurobacteriaceae
AY268937, Thermovibrio guaymasensis, Desulfurobacteriaceae
AB105049, Balnearium lithotrophicum, type sp., Desulfurobacteriaceae
AJ316619, Thermovibrio ruber, type sp., Desulfurobacteriaceae
AY268939, Desulfurobacterium atlanticum, Desulfurobacteriaceae
AY268936, Desulfurobacterium pacificum, Desulfurobacteriaceae
AJ001049, Desulfurobacterium thermolithotrophum, type sp., Desulfurobacteriaceae

AB282756, Thermosulfidibacter takaii, type sp., Unclassified Aquificales

Thermodesulfobacteria (7)
X96725, Thermodesulfobacterium hveragerdense, Thermodesulfobacteriaceae
AF334601, Thermodesulfobacterium thermophilum, Thermodesulfobacteriaceae
AF418169, Thermodesulfobacterium commune, type sp., Thermodesulfobacteriaceae
AF332514, Thermodesulfobacterium hydrogeniphilum, Thermodesulfobacteriaceae
EF554596, Caldimicrobium rimae, type sp., Thermodesulfobacteriaceae
AF393376, Thermodesulfatator indicus, type sp., Thermodesulfobacteriaceae
EU435435, Thermodesulfatator atlanticus, Thermodesulfobacteriaceae

AB428365, Caldisericum exile, type sp., Caldisericaceae

Synergistetes (18)
AF234544, Dethiosulfovibrio marinus, Synergistaceae
AF234542, Dethiosulfovibrio russensis, Synergistaceae
AY005466, Dethiosulfovibrio acidaminovorans, Synergistaceae
U52817, Dethiosulfovibrio peptidovorans, type sp., Synergistaceae
EU719657, Dethiosulfovibrio salsuginis, Synergistaceae
EF436500, Jonquetella anthropi, type sp., Synergistaceae
EU309492, Pyramidobacter piscolens, type sp., Synergistaceae
AF069287, Aminobacterium colombiense, type sp., Synergistaceae
AF073521, Aminobacterium mobile, Synergistaceae
CU463952, Cloacibacillus evryensis, type sp., Synergistaceae
L08066, Synergistes jonesii, type sp., Synergistaceae
CP001818, Thermanaerovibrio acidaminovorans, type sp., Synergistaceae
FR733707, Thermanaerovibrio velox, Synergistaceae
AY642589, Aminiphilus circumscriptus, type sp., Synergistaceae
DQ071273, Thermovirga lienii, type sp., Synergistaceae
FJ862996, Anaerobaculum hydrogeniformans, Synergistaceae
U50711, Anaerobaculum thermoterrenum, type sp., Synergistaceae
FR733692, Acetomicrobium flavidum, type sp., Bacteroidaceae

Y08935, Coprothermobacter platensis, Thermodesulfobiaceae

X69335, Coprothermobacter proteolyticus, type sp., Thermodesulfobiaceae
AB077817, Thermodesulfobium narugense, type sp., Thermodesulfobiaceae

Thermotogae (39)

Thermotogaceae (21)
DQ647057, Thermosipho africanus, type sp., Thermotogaceae
AB024932, Thermosipho japonicus, Thermotogaceae
AB257289, Thermosipho globiformans, Thermotogaceae
Z70248, Thermosipho melanesiensis, Thermotogaceae
GQ292553, Thermosipho affectus, Thermotogaceae
 AJ577471, Thermosipho atlanticus, Thermotogaceae
AJ272022, Thermosipho geolei, Thermotogaceae
Z49117, Fervidobacterium gondwanense, Thermotogaceae
EU851047, Fervidobacterium riparium, Thermotogaceae
CP000771, Fervidobacterium nodosum, type sp., Thermotogaceae
AY878719, Fervidobacterium changbaicum, Thermotogaceae
M59176, Fervidobacterium islandicum, Thermotogaceae
X80790, Thermotoga elfii, Thermotogaceae
AF355615, Thermotoga lettingae, Thermotogaceae
U22664, Thermotoga subterranea, Thermotogaceae
U89768, Thermotoga hypogea, Thermotogaceae
AB039769, Thermotoga thermarum, Thermotogaceae
M21774, Thermotoga maritima, type sp., Thermotogaceae
AB039768, Thermotoga neapolitana, Thermotogaceae
AJ872269, Thermotoga petrophila, Thermotogaceae
AJ872268, Thermotoga naphthophila, Thermotogaceae

AY800102, Petrotoga halophila, Thermotogaceae

FR733705, Petrotoga miotherma, type sp., Thermotogaceae
Y15479, Petrotoga mobilis, Thermotogaceae
AY125964, Petrotoga mexicana, Thermotogaceae
AJ311703, Petrotoga olearia, Thermotogaceae
AJ311702, Petrotoga sibirica, Thermotogaceae
FR850164, Defluviitoga tunisiensis, type sp., Thermotogaceae
HM037999, Geotoga petraea, type sp., Thermotogaceae
L10659, Geotoga subterranea, Thermotogaceae
EU588727, Oceanotoga teriensis, type sp., Thermotogaceae
AJ250439, Marinitoga camini, type sp., Thermotogaceae
AF326121, Marinitoga piezophila, Thermotogaceae
AB262395, Marinitoga okinawensis, Thermotogaceae
FM253687, Marinitoga litoralis, Thermotogaceae
AJ786363, Marinitoga hydrogenitolerans, Thermotogaceae
EU980631, Kosmotoga olearia, type sp., Thermotogaceae
EU276414, Thermococcoides shengliensis, Thermotogaceae
AB530678, Kosmotoga arenicorallina, Thermotogaceae

Archaea (361)

Euryarchaeota (313)

Halobacteria (139)
AB489220, Halostagnicola kamekurae, Halobacteriaceae
AM117571, Halostagnicola larsenii, type sp., Halobacteriaceae
AB533255, Halostagnicola alkaliphila, Halobacteriaceae
AM039978, Halovivax asiaticus, type sp., Halobacteriaceae
AM269467, Halovivax ruber, Halobacteriaceae
DQ367242, Haloterrigena longa, Halobacteriaceae
AM231733, Natrinema ejinorense, Halobacteriaceae
FJ545273, Haloterrigena daqingensis, Halobacteriaceae
FN376859, Natronorubrum sediminis, Halobacteriaceae
DQ535889, Natronorubrum sulfidifaciens, Halobacteriaceae
Y14028, Natronorubrum bangense, type sp., Halobacteriaceae
DQ205516, Natronorubrum aibiense, Halobacteriaceae
AB005656, Natronorubrum tibetense, Halobacteriaceae
D14123, Natrialba asiatica, type sp., Halobacteriaceae
D14124, Natrialba taiwanensis, Halobacteriaceae
AF251941, Natrialba aegyptia, Halobacteriaceae
AF262026, Natrialba hulunbeirensis, Halobacteriaceae
X72495, Natrialba magadii, Halobacteriaceae
AJ004806, Natrialba chahannaoensis, Halobacteriaceae
AJ002949, Natrinema pallidum, Halobacteriaceae
AJ002947, Natrinema pellirubrum, type sp., Halobacteriaceae
D14125, Halorubrum trapanicum, Halobacteriaceae
AY208972, Natrinema altunense, Halobacteriaceae
AB023426, Natrinema versiforme, Halobacteriaceae
AB289741, Natrinema gari, Halobacteriaceae
EF077633, Haloterrigena jeotgali, Halobacteriaceae
AF115478, Haloterrigena thermotolerans, Halobacteriaceae
AY820137, Haloterrigena saccharevitans, Halobacteriaceae
AM942763, Haloterrigena salina, Halobacteriaceae
CP001860, Haloterrigena turkmenica, type sp., Halobacteriaceae
AM285297, Haloterrigena hispanica, Halobacteriaceae
DQ367241, Haloterrigena limicola, Halobacteriaceae
AB125106, Natronolimnobius baerhuensis, type sp., Halobacteriaceae
AB125108, Natronolimnobius innermongolicus, Halobacteriaceae
AF333759, Halopiger aswanensis , Halobacteriaceae
AM268114, Halopiger xanaduensis, type sp., Halobacteriaceae
AF333760, Halobiforma haloterrestris, type sp., Halobacteriaceae
AY277582, Halobiforma lacisalsi, Halobacteriaceae
AB045012, Halobiforma nitratireducens, Halobacteriaceae
D87970, Natronobacterium gregoryi, type sp., Halobacteriaceae
EF077631, Natronococcus jeotgali, Halobacteriaceae
Z28378, Natronococcus occultus, type sp., Halobacteriaceae
D43628, Natronococcus amylolyticus, Halobacteriaceae
AB501361, Natronoarchaeum mannanilyticum, type sp., Halobacteriaceae
JF293279, Haloarchaeobius iranensis, type sp., Halobacteriaceae
JF293278, Haloarchaeobius iranensis, type sp., Halobacteriaceae
AY243109, Halococcus qingdaonensis, Halobacteriaceae
AB220647, Halococcus thailandensis, Halobacteriaceae
D11106, Halococcus morrhuae, type sp., Halobacteriaceae
AJ420376, Halococcus dombrowskii, Halobacteriaceae
DQ017835, Halococcus hamelinensis, Halobacteriaceae
AB004876, Halococcus saccharolyticus, Halobacteriaceae
AB004877, Halococcus salifodinae, Halobacteriaceae
EF077632, Halalkalicoccus jeotgali, Halobacteriaceae
AF435112, Halalkalicoccus tibetensis, type sp., Halobacteriaceae
EF660747, Haladaptatus cibarius, Halobacteriaceae
EU887285, Haladaptatus litoreus, Halobacteriaceae
DQ344973, Haladaptatus paucihalophilus, type sp., Halobacteriaceae
D13379, Halorubrum sodomense, Halobacteriaceae
AB090169, Halorubrum terrestre, Halobacteriaceae
D63572, Halorubrum distributum, Halobacteriaceae
EF028067, Halorubrum litoreum, Halobacteriaceae
L00922, Halorubrum coriense, Halobacteriaceae
EF139654, Halorubrum californiense, Halobacteriaceae
AM048786, Halorubrum chaoviator, Halobacteriaceae
DQ118426, Halorubrum ezzemoulense, Halobacteriaceae
AY510707, Halorubrum xinjiangense, Halobacteriaceae
FR870448, Halorubrum tebenquichense, Halobacteriaceae
AM491830, Halorubrum ejinorense, Halobacteriaceae
DQ355793, Halorubrum arcis, Halobacteriaceae
U17364, Halorubrum saccharovorum, type sp., Halobacteriaceae
DQ355813, Halorubrum aidingense, Halobacteriaceae
AM900832, Halorubrum kocurii, Halobacteriaceae
 U17365, Halorubrum lacusprofundi, Halobacteriaceae
DQ355814, Halorubrum lipolyticum, Halobacteriaceae
AM235786, Halorubrum orientale, Halobacteriaceae
AY149598, Halorubrum tibetense, Halobacteriaceae
AM268115, Halorubrum aquaticum, Halobacteriaceae
EF077639, Halorubrum cibi, Halobacteriaceae
AY510708, Halorubrum alkaliphilum, Halobacteriaceae
D87972, Halorubrum vacuolatum, Halobacteriaceae
JF979130, Halopenitus persicus, type sp., Halobacteriaceae
AY498641, Halonotius pteroides, type sp., Halobacteriaceae
GQ282625, Haloplanus aerogenes, Halobacteriaceae
DQ417339, Haloplanus natans, type sp., Halobacteriaceae
EU931578, Haloplanus vescus, Halobacteriaceae
EU887283, Halogranum rubrum, type sp., Halobacteriaceae
FN594944, Halogranum salarium, Halobacteriaceae
GQ282623, Halogranum amylolyticum, Halobacteriaceae
GQ282624, Halogranum gelatinilyticum, Halobacteriaceae
AB037474, Haloferax alexandrinus, Halobacteriaceae
AY425724, Haloferax volcanii, type sp., Halobacteriaceae
D14128, Haloferax denitrificans, Halobacteriaceae
D13378, Haloferax gibbonsii, Halobacteriaceae
AB258305, Haloferax prahovense, Halobacteriaceae
AB081732, Haloferax lucentense, Halobacteriaceae
D11107, Haloferax mediterranei, Halobacteriaceae
DQ860980, Haloferax mucosum, Halobacteriaceae
AY458601, Haloferax sulfurifontis, Halobacteriaceae
DQ860977, Haloferax elongans, Halobacteriaceae
AY838278, Haloferax larsenii, Halobacteriaceae
EU887284, Halopelagius inordinatus, type sp., Halobacteriaceae
GQ282620, Halobellus clavatus, type sp., Halobacteriaceae
HQ451075, Halobellus salinus, Halobacteriaceae
GU208828, Halobellus limi, Halobacteriaceae
AY676200, Haloquadratum walsbyi, type sp., Halobacteriaceae
AF002984, Halogeometricum borinquense, type sp., Halobacteriaceae
EU887286, Halogeometricum rufum, Halobacteriaceae
EF055454, Halosarcina pallida, type sp., Halobacteriaceae
EU931577, Halosarcina limi, Halobacteriaceae
GU208826, Halolamina pelagica, type sp., Halobacteriaceae
AB285020, Halobacterium piscisalsi, Halobacteriaceae
AJ496185, Halobacterium salinarum, type sp., Halobacteriaceae
DQ256409, Halobacterium jilantaiense, Halobacteriaceae
AJ548827, Halobacterium noricense, Halobacteriaceae
AB454051, Salarchaeum japonicum, type sp., Halobacteriaceae
AB371717, Halarchaeum acidiphilum, type sp., Halobacteriaceae
HM159611, Halobaculum gomorrense, type sp., Halobacteriaceae
AB072815, Halosimplex carlsbadense, type sp., Halobacteriaceae
HQ197980, Halovenus aranensis, type sp., Halobacteriaceae
AY596297, Haloarcula marismortui, Halobacteriaceae
EF645688, Haloarcula vallismortis, type sp., Halobacteriaceae
AB010964, Haloarcula quadrata, Halobacteriaceae
AB090167, Haloarcula hispanica, Halobacteriaceae
EF645681, Haloarcula argentinensis, Halobacteriaceae
DQ826513, Haloarcula amylolytica, Halobacteriaceae
EF645685, Haloarcula japonica, Halobacteriaceae
FJ429317, Haloarcula salaria, Halobacteriaceae
EF533994, Halomicrobium katesii, Halobacteriaceae
FJ429313, Haloarcula tradensis, Halobacteriaceae
AY596297, Haloarcula marismortui, Halobacteriaceae
EF645690, Halomicrobium mukohataei, type sp., Halobacteriaceae
HM063952, Halomicrobium zhouii, Halobacteriaceae
EF127229, Halorhabdus tiamatea, Halobacteriaceae
0.01 AF071880, Halorhabdus utahensis, type sp., Halobacteriaceae
GQ282621, Halorientalis regularis, type sp., Halobacteriaceae
AY498645, Natronomonas moolapensis, Halobacteriaceae
CR936257, Natronomonas pharaonis , type sp., Halobacteriaceae
AB519798, Halomarina oriensis, type sp., Halobacteriaceae

Methanomicrobia (71)

Methanomicrobiales (37)
AF347025, Methanocalculus chunghsingensis, Unclassified Methanomicrobiales
AF033672, Methanocalculus halotolerans, type sp., Unclassified Methanomicrobiales
AF411470, Methanocalculus taiwanensis, Unclassified Methanomicrobiales
AB008853, Methanocalculus pumilus, Unclassified Methanomicrobiales

Methanocorpusculaceae (4)
AY196676, Methanocorpusculum bavaricum, Methanocorpusculaceae
M59147, Methanocorpusculum parvum, type sp., Methanocorpusculaceae
AY260436, Methanocorpusculum labreanum, Methanocorpusculaceae
FR749947, Methanocorpusculum sinense, Methanocorpusculaceae

Y16428, Methanofollis liminatans, Methanomicrobiaceae

AF095272, Methanofollis tationis, type sp., Methanomicrobiaceae
AB371073, Methanofollis ethanolicus, Methanomicrobiaceae
AF262035, Methanofollis aquaemaris, Methanomicrobiaceae
AY186542, Methanofollis formosanus, Methanomicrobiaceae

Methanospirillaceae (2)
AY196683, Methanospirillum hungatei, type sp., Methanospirillaceae
AB517986, Methanospirillum lacunae, Methanospirillaceae

AB447467, Methanolinea mesophila, Methanoregulaceae

DQ282124, Methanoregula boonei, type sp., Methanoregulaceae
AB479390, Methanoregula formicica, Methanoregulaceae
AB162774, Methanolinea tarda, type sp., Methanoregulaceae
EU156000, Methanosphaerula palustris, type sp., Methanoregulaceae
FJ977567, Methanoculleus hydrogenitrophicus, Methanomicrobiaceae
AB065297, Methanoculleus thermophilus, Methanomicrobiaceae
AY196674, Methanoculleus bourgensis, type sp., Methanomicrobiaceae
M59134, Methanoculleus marisnigri, Methanomicrobiaceae
AF531178, Methanoculleus submarinus, Methanomicrobiaceae
AB038795, Methanoculleus chikugoensis, Methanomicrobiaceae
Y16382, Methanoculleus palmolei, Methanomicrobiaceae
DQ787476, Methanoculleus receptaculi, Methanomicrobiaceae

Methanomicrobiaceae (9)
U76631, Methanoplanus petrolearius, Methanomicrobiaceae
AY196678, Methanolacinia paynteri, type sp., Methanomicrobiaceae
M59142, Methanomicrobium mobile, type sp., Methanomicrobiaceae
FR733674, Methanoplanus endosymbiosus, Methanomicrobiaceae
M59143, Methanoplanus limicola, type sp., Methanomicrobiaceae
FR733663, Methanogenium cariaci, type sp., Methanomicrobiaceae
FR749908, Methanogenium frigidum, Methanomicrobiaceae
DQ177344, Methanogenium marinum, Methanomicrobiaceae
M59131, Methanogenium organophilum, Methanomicrobiaceae
 Methanosarcinales (31)

Methanosarcinaceae (26)
AJ012094, Methanosarcina barkeri, Methanosarcinaceae
FR733661, Methanosarcina vacuolata, Methanosarcinaceae
M59140, Methanosarcina thermophila, Methanosarcinaceae
M59137, Methanosarcina acetivorans, Methanosarcinaceae
FR733698, Methanosarcina siciliae, Methanosarcinaceae
AJ012095, Methanosarcina mazei, Methanosarcinaceae
AB288262, Methanosarcina horonobensis, Methanosarcinaceae
AF432127, Methanosarcina lacustris, Methanosarcinaceae
AJ238648, Methanosarcina baltica, Methanosarcinaceae
AJ012742, Methanosarcina semesiae, Methanosarcinaceae
AJ238002, Methanimicrococcus blatticola, type sp., Methanosarcinaceae
FR733684, Methanolobus bombayensis, Methanosarcinaceae
U20155, Methanolobus vulcani, Methanosarcinaceae
AB370245, Methanolobus profundi, Methanosarcinaceae
U20154, Methanolobus taylorii, Methanosarcinaceae
U20152, Methanolobus oregonensis, Methanosarcinaceae
EU711413, Methanolobus zinderi, Methanosarcinaceae
AF120163, Methanomethylovorans hollandica, type sp., Methanosarcinaceae
AY672821, Methanomethylovorans thermophila, Methanosarcinaceae
AY941801, Methanococcoides alaskense, Methanosarcinaceae
CP000300, Methanococcoides burtonii , Methanosarcinaceae
FR733669, Methanococcoides methylutens, type sp., Methanosarcinaceae
FR733671, Methanohalophilus halophilus, Methanosarcinaceae
M59133, Methanohalophilus mahii, type sp., Methanosarcinaceae
AY290717, Methanohalophilus portucalensis, Methanosarcinaceae
FJ224366, Methanosalsum zhilinae, type sp., Methanosarcinaceae

FR733675, Methanohalobium evestigatum, type sp., Methanosarcinaceae

CP002565, Methanosaeta concilii, type sp., Methanosaetaceae
AB071701, Methanosaeta thermophila, Methanosaetaceae
AY817738, Methanosaeta harundinacea, Methanosaetaceae
DQ787474, Methermicoccus shengliensis, type sp., Methermicoccaceae

Methanocellales (3)
AB196288, Methanocella paludicola, type sp., Methanocellaceae
JN048683, Methanocella conradii, Methanocellaceae
AM114193, Methanocella arvoryzae, Methanocellaceae

Archaeoglobi (8)
AJ299219, Archaeoglobus profundus, Archaeoglobaceae
AF220166, Ferroglobus placidus, type sp., Archaeoglobaceae
AE000782, Archaeoglobus fulgidus , type sp., Archaeoglobaceae
AF220165, Geoglobus ahangari, type sp., Archaeoglobaceae
FJ216404, Geoglobus acetivorans, Archaeoglobaceae
AB274307, Archaeoglobus infectus, Archaeoglobaceae
AF418181, Archaeoglobus veneficus, Archaeoglobaceae
FJ810190, Archaeoglobus sulfaticallidus, Archaeoglobaceae

Methanobacteria (40)
AB542742, Methanobacterium petrolearium, Methanobacteriaceae
AB368917, Methanobacterium kanagiense, Methanobacteriaceae
AB542743, Methanobacterium ferruginis, Methanobacteriaceae
X99044, Methanobacterium subterraneum, Methanobacteriaceae
AF169245, Methanobacterium formicicum, type sp., Methanobacteriaceae
AF093061, Methanobacterium palustre, Methanobacteriaceae
DQ649335, Methanobacterium alcaliphilum, Methanobacteriaceae
AF233586, Methanobacterium congolense, Methanobacteriaceae
HQ110085, Methanobacterium lacus, Methanobacteriaceae
AF095261, Methanobacterium ivanovii, Methanobacteriaceae
DQ517520, Methanobacterium arcticum, Methanobacteriaceae
EF016285, Methanobacterium veterum, Methanobacteriaceae
AY196657, Methanobacterium bryantii, Methanobacteriaceae
AF028690, Methanobacterium oryzae, Methanobacteriaceae
AY350742, Methanobacterium beijingense, Methanobacteriaceae
U62533, Methanobrevibacter curvatus, Methanobacteriaceae
U82322, Methanobrevibacter filiformis, Methanobacteriaceae
U41095, Methanobrevibacter cuticularis, Methanobacteriaceae
AY196665, Methanobrevibacter arboriphilus, Methanobacteriaceae
AF242652, Methanobrevibacter acididurans, Methanobacteriaceae
U55238, Methanobrevibacter gottschalkii, Methanobacteriaceae
U55236, Methanobrevibacter thaueri, Methanobacteriaceae
AY196673, Methanobrevibacter millerae, Methanobacteriaceae
U55233, Methanobrevibacter smithii, Methanobacteriaceae
U55237, Methanobrevibacter woesei, Methanobacteriaceae
AY615201, Methanobrevibacter olleyae, Methanobacteriaceae
AY196666, Methanobrevibacter ruminantium, type sp., Methanobacteriaceae
U55240, Methanobrevibacter wolinii, Methanobacteriaceae
CP000102, Methanosphaera stadtmanae , type sp., Methanobacteriaceae
AY386124, Methanobacterium aarhusense, Methanobacteriaceae
EU333914, Methanobacterium flexile, Methanobacteriaceae
EU366499, Methanobacterium movens, Methanobacteriaceae
X99047, Methanothermobacter thermoflexus, Methanobacteriaceae
X99048, Methanothermobacter thermophilus, Methanobacteriaceae
X99046, Methanothermobacter defluvii, Methanobacteriaceae
AY196660, Methanothermobacter thermautotrophicus, type sp., Methanobacteriaceae
AB104858, Methanothermobacter wolfeii, Methanobacteriaceae
X15364, Methanothermobacter marburgensis, Methanobacteriaceae
HQ283273, Methanothermobacter crinale, Methanobacteriaceae
CP002278, Methanothermus fervidus, type sp., Methanothermaceae

Thermococci (33)
AY099173, Thermococcus barossii, Thermococcaceae
AY099174, Thermococcus celer, type sp., Thermococcaceae
AY099179, Thermococcus hydrothermalis, Thermococcaceae
AB107767, Thermococcus coalescens, Thermococcaceae
AF394925, Thermococcus thioreducens, Thermococcaceae
AB107768, Thermococcus celericrescens, Thermococcaceae
AY099185, Thermococcus siculi, Thermococcaceae
AJ310754, Thermococcus atlanticus, Thermococcaceae
AY099186, Thermococcus stetteri, Thermococcaceae
AY099176, Thermococcus fumicolans, Thermococcaceae
AF479014, Thermococcus gammatolerans, Thermococcaceae
D38650, Thermococcus kodakarensis, Thermococcaceae
AY099183, Thermococcus peptonophilus, Thermococcaceae
AY099187, Thermococcus waiotapuensis, Thermococcaceae
U76534, Thermococcus zilligii, Thermococcaceae
AY099182, Thermococcus pacificus, Thermococcaceae
AY099170, Thermococcus acidaminovorans, Thermococcaceae
AY099184, Thermococcus profundus, Thermococcaceae
 AY099177, Thermococcus gorgonarius, Thermococcaceae
AY099178, Thermococcus guaymasensis, Thermococcaceae
AE009950, Pyrococcus furiosus, type sp., Thermococcaceae
AY099169, Pyrococcus horikoshii, Thermococcaceae
AY099168, Pyrococcus glycovorans, Thermococcaceae
AY099175, Thermococcus chitonophagus, Thermococcaceae
EU682399, Pyrococcus yayanosii, Thermococcaceae
AY099172, Thermococcus barophilus, Thermococcaceae
Y08384, Thermococcus aggregans, Thermococcaceae
AY099171, Thermococcus aegaeus, Thermococcaceae
AJ238992, Thermococcus sibiricus, Thermococcaceae
FR749899, Thermococcus litoralis, Thermococcaceae
AB055121, Thermococcus alcaliphilus, Thermococcaceae
AB019239, Palaeococcus ferrophilus, type sp., Thermococcaceae
AY134472, Palaeococcus helgesonii, Thermococcaceae

Thermoplasmata (8)

Ferroplasmaceae (3)
AM943980, Acidiplasma aeolicum, type sp., Ferroplasmaceae
AY907888, Acidiplasma cupricumulans, Ferroplasmaceae
AJ224936, Ferroplasma acidiphilum, type sp., Ferroplasmaceae

Picrophilaceae (2)
X84901, Picrophilus oshimae, type sp., Picrophilaceae
AE017261, Picrophilus torridus , Picrophilaceae

Thermoplasmataceae (2)
M38637, Thermoplasma acidophilum, type sp., Thermoplasmataceae
AJ299215, Thermoplasma volcanium, Thermoplasmataceae

AB269873, Thermogymnomonas acidicola, type sp., Unclassified Thermoplasmatales

HQ896499, Methanomassiliicoccus luminyensis, type sp., Unclassified Methanomicrobia

Methanococci (12)
DQ195164, Methanococcus aeolicus, Methanococcaceae
AB057722, Methanothermococcus okinawensis, Methanococcaceae
AY196675, Methanococcus vannielii, Methanococcaceae
M59128, Methanothermococcus thermolithotrophicus, type sp., Methanococcaceae
AB100884, Methanotorris formicicus, Methanocaldococcaceae
CP002737, Methanotorris igneus, Methanocaldococcaceae

Methanocaldococcaceae (6)
AF547621, Methanocaldococcus indicus, Methanocaldococcaceae
AF025822, Methanocaldococcus infernus, Methanocaldococcaceae
FJ766848, Methanocaldococcus villosus, Methanocaldococcaceae
AF051404, Methanocaldococcus vulcanius, Methanocaldococcaceae
L77117, Methanocaldococcus jannaschii , type sp., Methanocaldococcaceae
AF056938, Methanocaldococcus fervens, Methanocaldococcaceae

AE009439, Methanopyrus kandleri, type sp., Methanopyraceae

Crenarchaeota (48)

Sulfolobaceae (16)
X90482, Metallosphaera prunae, Sulfolobaceae
D26491, Metallosphaera sedula, type sp., Sulfolobaceae
D86414, Metallosphaera hakonensis, Sulfolobaceae
FN796482, Metallosphaera cuprina, Sulfolobaceae
D26489, Acidianus brierleyi, Sulfolobaceae
D85506, Acidianus ambivalens, Sulfolobaceae
D85505, Acidianus infernus, type sp., Sulfolobaceae
AY907891, Acidianus sulfidivorans, Sulfolobaceae
AB022438, Sulfolobus tokodaii, Sulfolobaceae
D85507, Sulfurisphaera ohwakuensis, type sp., Sulfolobaceae
AB010957, Sulfolobus yangmingensis, Sulfolobaceae
D14876, Sulfolobus acidocaldarius, type sp., Sulfolobaceae
D85520, Stygiolobus azoricus, type sp., Sulfolobaceae
D85519, Sulfolobus metallicus, Sulfolobaceae
M32504, Sulfolobus shibatae, Sulfolobaceae
D26490, Sulfolobus solfataricus, Sulfolobaceae

Thermoproteales (11)

Thermoproteaceae (10)
AJ277124, Pyrobaculum arsenaticum, Thermoproteaceae
AB087402, Pyrobaculum oguniense, Thermoproteaceae
CP001014, Thermoproteus neutrophilus, Thermoproteaceae
L07510, Pyrobaculum aerophilum, Thermoproteaceae
AB078332, Pyrobaculum calidifontis, Thermoproteaceae
M35966, Thermoproteus tenax, type sp., Thermoproteaceae
AB063630, Vulcanisaeta distributa, type sp., Thermoproteaceae
AB063645, Vulcanisaeta souniana, Thermoproteaceae
AB013926, Caldivirga maquilingensis, type sp., Thermoproteaceae
AB005296, Thermocladium modestius, type sp., Thermoproteaceae

X14835, Thermofilum pendens, type sp., Thermofilaceae

Desulfurococcales and Fervidicoccales (11)

AY264344, Desulfurococcus fermentans, Desulfurococcaceae
EU167539, Desulfurococcus kamchatkensis, Desulfurococcaceae
CP002363, Desulfurococcus mucosus, type sp., Desulfurococcaceae
X99556, Thermosphaera aggregans, type sp., Desulfurococcaceae
X98064, Sulfophobococcus zilligii, type sp., Desulfurococcaceae
AJ012645, Staphylothermus hellenicus, Desulfurococcaceae
X99560, Staphylothermus marinus, type sp., Desulfurococcaceae
EF552404, Fervidicoccus fontis, type sp., Fervidicoccaceae
X99562, Ignicoccus islandicus, type sp., Desulfurococcaceae
AJ271794, Ignicoccus pacificus, Desulfurococcaceae
AJ318042, Ignicoccus hospitalis, Desulfurococcaceae

AB109559, Aeropyrum camini, Desulfurococcaceae

D83259, Aeropyrum pernix, type sp., Desulfurococcaceae
X99554, Thermodiscus maritimus, type sp., Desulfurococcaceae
Y07784, Stetteria hydrogenophila, type sp., Desulfurococcaceae

Acidilobales (3)
AF191225, Acidilobus aceticus, type sp., Acidilobaceae
AY350586, Acidilobus saccharovorans, Acidilobaceae
AB087499, Caldisphaera lagunensis, type sp., Caldisphaeraceae

DQ060321, Ignisphaera aggregans, type sp., Desulfurococcaceae

Pyrodictiaceae (2)
CP000493, Hyperthermus butylicus , type sp., Pyrodictiaceae
M21087, Pyrodictium occultum, type sp., Pyrodictiaceae