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a
Dipartimento di Chimica IFM, Universit a di Torino, Via P. Giuria 7, 10125 Torino, Italy
b
Laboratoire de P etrologie, Mod elisation de Materiaux et Processus, Universit
e Pierre et Marie Curie,
4, Place Jussieu, 75232 Paris Cedex 05, France
c
Dipartimento di Scienze e Tecnologie Avanzate, Universit a del Piemont Orientale, C.so Borsalino 54, 15100 Alessandria, Italy
d
CLRC Daresbury Laboratory, Daresbury, WA4 4AD Warrington, UK
e
Unit
a INFM di Torino, Sezione F, Via P. Giuria 7, 10125 Torino, Italy
Received 9 August 2001; in ®nal form 6 September 2001
Abstract
Results are reported on the geometry optimisation of periodic systems with the Hartree±Fock analytical gradients
recently implemented in the CR Y S T A L code. Application to the structure optimisation of molecules, polymers, slabs
and crystals is presented. Ó 2001 Elsevier Science B.V. All rights reserved.
lytical Hartree±Fock gradients [6±8] as imple- For periodic systems, a cell ®xed unconstrained
mented in the CR Y S T A L code [9]. Examples of optimisation of the atomic coordinates was carried
structure optimisation are reported ranging from out [11].
molecules to polymers, slabs and crystals. To the
best of our knowledge this is the ®rst time that
geometry optimisation of crystals adopting ana- 3. Results and discussion
lytical Hartree±Fock gradients is reported.
3.1. Preliminary calculations
Table 1
Comparison between present work (pw) and previous data on Baker's [12] set of molecules
Molecule Number of at- Symmetry Number of Number of cycles
oms variables pw Ref. [12]
Water 3 C2v 2 5 5
Ammonia 4 C3v 2 6 7
Ethane 8 D3d 3 7 7
Acetylene 4 D1h 2 6 7
Allene 7 D2d 3 7 10
Hydroxysulphane 4 C1 6 26 21
Benzene 12 D6h 2 5 6
Methylamine 7 Cs 10 8 10
Ethanol 9 Cs 13 19 18
Acetone 10 C2v 8 15 22
Disilyl ether 9 C2v 7 20 27
1,3,5-trisilacyclohexane 18 C3v 11 23 36
Benzaldehyde 14 Cs 25 14 17
1,3-di¯uorobenzene 12 C2v 11 7 8
1,3,5-tri¯uorobenzene 12 D3h 4 7 7
Neopentane 17 Td 3 6 10
Furan 9 C2v 8 12 10
Naphthalene 18 D2h 9 10 11
1,5-di¯uoronaphthalene 18 C2h 17 14 16
2-hydroxybicyclopentane 14 C1 36 44 45
ACHTAR10 16 C1 42 47 51
ACANIL01 19 Cs 34 35 36
Benzidine 26 D2 18 39 26
Pterin 17 Cs 31 20 23
Difuropyrazine 16 C2h 15 18 21
Mesityl oxide 17 Cs 28 38 38
Histidine 20 C1 54 92 102
Dimethylpentane 23 C1 63 31 29
Caeine 24 Cs 42 42 39
Menthone 29 C1 81 127 100
ducible Brillouin zone (IBZ) [9], on the accuracy of grals screening (TOL 6 6 6 6 12), [9] we have
geometry optimisation. progressively increased the number of sampling
On this purpose, we performed a systematic in- points (NKP) in IBZ (see cases 1, 3, 8, and 9) and
vestigation on the geometry optimisation of crys- tested the convergence on Ei . Results in Table 2
talline urea, as a test case. The experimental show that with 18 k-points (case 3) Ei is already
structure determined by neutron low temperature stable. As regards the dependence of Ei on TOL
diraction data [13] has been used as initial ge- (see cases 2, 3, 4, 5, 6, and 7) one can see that Ei is
ometry. All the optimisations have been carried out still varying in the explored range of TOL, though
by employing a STO-3G basis set and a unit matrix by less than 1 mHartree. However, the number of
as initial Hessian. Results are shown in Table 2. iterations is de®nitely insensitive to the computa-
In Table 2, the number of optimisation cycles, tional conditions, being always about 15 cycles
the initial geometry total energy, Ei and the energy and it is worth noting that the gain in the com-
gain at convergence, DE, are reported as well a the puted total energy is almost constant in all cases,
largest (Max DX10 ) and (RMS DX10 ) dierence indicating that the ®nal structure obtained in dif-
between the optimised cartesian coordinates for ferent conditions are all very similar. This is also
each case and case 10, considered as a reference. con®rmed when considering Max DX10 and RMS
Starting from the default tolerances for the inte- DX10 which are in general below 1 10 3 and
134 B. Civalleri et al. / Chemical Physics Letters 348 (2001) 131±138
Table 2
Dependence of the geometry optimisation of crystalline urea on the number of sampling points in the IBZ, NKP, and on the integrals
screening tolerances, TOL [9]
Case NKP TOL Number Ei a DEa Maxb RMSb CPU
of cycles DX10 DX10 timec
1 6 6 6 6 6 12d 15 442:069367 0.015228 0.001021 0.000435 179
2 18 5 5 5 5 10 15 442:069659 0.015213 0.001310 0.000512 110
3 6 6 6 6 12d 15 442:069584 0.015265 0.000257 0.000083 180
4 7 7 7 7 14 15 442:069929 0.015326 0.000222 0.000118 299
5 8 8 8 8 16 15 442:070365 0.015330 0.000468 0.000185 443
6 5 5 5 10 10 14 442:069901 0.015291 0.000701 0.000262 132
7 6 6 6 12 12 14 442:069759 0.015330 0.000254 0.000108 228
8 40 6 6 6 6 12d 15 442:069584 0.015265 0.000653 0.000287 181
9 75 6 6 6 6 12d 14 442:069584 0.015265 0.000649 0.000253 185
10 8 8 8 8 16 16 442:070365 0.015330 0.000000 0.000000 439
a
Ei : initial geometry total energy; DE: gain in total energy at convergence (atomic units).
b
Max DX10 and RMS DX10 : maximum and RMS dierence between the optimised cartesian coordinates of the current case and case 10,
as the reference.
c
Average CPU time for optimisation cycle in seconds.
d
Default values in CR Y S T A L .
5 10 4 A, respectively. In particular, for case 3 in the geometry optimisation of periodic systems,
their values are 0.000257 and 0.000083 A, well we de®ned an appropriate test suite of 19 systems.
below the accuracy of an experimental structure General information on the adopted set of test
determination. cases is presented in Table 3.
In summary, good equilibrium structures can be Systems are grouped on the basis of their peri-
obtained by adopting well-converged HF solutions odicity: polymers, slabs, and crystals. For a sys-
and default integrals screening tolerances, as in tematic assessment, periodic systems are selected
case 3. This also leads to a signi®cant saving in to cover a wide range of structural types and
computational time as shown in the last column of symmetries. They represent most of the dierent
Table 2. Indeed, the cost of case 10 is about 2.5 kinds of chemical bonds that can be found in solid-
times larger than that of case 3. state chemistry. Thus, ionic, semi-ionic, covalent
As a further information on the cost of the and molecular periodic systems are included.
calculations, a few details on the CPU time (on an Furthermore, the examined systems play an im-
IBM RS/6000 43P) for case 3 follow. For a con- portant role in materials science and most of them
ventional SCF, i.e., storing all of the integrals on have been the subject of previous studies in our
disk the average CPU time for an optimisation laboratory [14±24]. In particular, examples have
step takes 180 s, i.e., 37 s for the SCF cycle and 143 been reported on: oxides and their surface relax-
s for the gradient evaluation. For a direct SCF ation (a-Al2 O3 and a-Cr2 O3 from bulk to a slab
calculation, the average CPU time for an optimi- model [14,15]), silicates and zeolites [17±20], ad-
sation step is 346 s where the SCF cycle and the sorption on surfaces (MgO(0 0 1)/CO [21]) and in
gradient computation take 203 and 143 s, respec- zeolites (H±CHA(3:1)/NH3 [20]), defective systems
tively (it must be noticed that the analytical gra- (carbon substitution in bulk silicon, C@Si [22])
dient evaluation is always performed by means of and molecular crystals (e.g., ice [23] and urea [24]).
a direct algorithm). Initial starting structures were taken from well-
de®ned sources either from experimental data or
3.2. Periodic test cases from previous quantum or molecular mechanics
calculations. For the sake of brevity, we do not
On the basis of the previous calculations and in report all the references and structural details here,
order to illustrate the performances of the method however, full information about the starting ge-
B. Civalleri et al. / Chemical Physics Letters 348 (2001) 131±138 135
Table 3
General information on the periodic systems adopted as test cases in the present work
Dim. System Typea Symmetryb Number Basis set
of atoms
One-dimensional In®nite water chain P P1 (1) 6 STO-3G
Polyglycine (C5 conformer) P P1m1 (2) 14 STO-3G
Polytetra¯uoroethylene P Pmcm (8) 6 STO-3G
Two-dimensional a-Al2 O3 slab (6 atomic layers) S P3 (6) 10 STO-3G
a-Cr2 O3 slab (6 atomic layers) S P3 (6) 10 Cr,O [14,15]
MgO(0 0 1)/CO (3 atomic layers) Ad P4=mmm (16) 10 Mg,O [21]
Three-dimensional a-Al2 O3 IC R3c (12) 10 STO-3G
a-Cr2 O3 IC R3c (12) 10 Cr,O [14,15]
a-Quartz IC P32 21 (6) 9 STO-3G
a-Boron CC R3m (12) 12 STO-3G
C@Si (32 atoms super-cell) CC I43m (24) 32 STO-3G
Ferroelectric ordered ice (Ice XI) MC Cmc21 (4) 12 STO-3G
a-Oxalic acid dihydrate crystal MC P21 =n (4) 28 STO-3G
Urea crystal MC P421 m (8) 16 STO-3G
Silica sodalite SOD(Si) Z P43m (24) 36 STO-3G
Silica faujasite FAU(Si) Z Fd3m (48) 144 STO-3G
Titano chabazite Ti±CHA(1:1)c Z R3 (6) 36 Si,O,Ti [18]
Acidic chabazite H±CHA(3:1)d Z R3 (3) 39 STO-3G
H±CHA(3:1)/NH3 d Ad R3 (3) 51 STO-3G
a
Type: P polymer, S surface, Ad adsorption, IC ionic/semi-ionic crystal, CC covalent crystal, MC molecular crystal,
Z zeolite.
b
Number of symmetry operations in parentheses.
c
Si:Al 1:1
d
Si:Al 3:1
ometries can be found at the CR Y S T A L web site the studied systems are formed by three-dimen-
[25]. All optimisations were carried out employing sional networks of H-bonds. For instance, in the
the STO-3G basis set, except for a few cases ex- a-oxalic acid dihydrate crystal, each molecule is
plicitly indicated in Table 3, and a unit matrix has surrounded by six water molecules which are then
been used as initial guess for the Hessian. involved in three hydrogen bonds with nearby
Results are shown in Table 4. For each system, oxalic acid molecules (Fig. 1). The crystal structure
the number of variables to be optimised and the results in a low symmetry complex network of
number of optimisation cycles are reported as well H-bonds. In spite of such a complicated structure,
as energetic data, namely: initial and ®nal energies, the geometry optimisation of the oxalic acid crystal
and the gain in total energy at convergence. (21 degrees of freedom) is achieved after 49 cycles
Results in Table 4 show that geometry optimi- only, i.e., about twice the number of variables. In
sation performs equally well for systems with any general, results show that, even for weakly bound
periodicity: polymers, slabs and crystals. The systems, optimisation performs quite well.
quality of geometry optimisation appears to be Zeolites are another important class of materi-
independent of the type of structure and symmetry als. Because of their relevance in materials science,
and, as a general trend, the number of iterations a few cases have been included in the test suite.
ranges from one to ®ve times the number of vari- Among them, the geometry optimisation of H±
ables to be optimised. CHA(3:1)/NH3 (Fig. 2) is worth being remarked
Indeed, molecular crystals are important test upon. In fact, among the test cases here consid-
cases for geometry optimisation due to the pres- ered, H±CHA(3:1)/NH3 is the one with the largest
ence of soft modes and weak interactions. All of number of degrees of freedom and the speci®c Si/
136 B. Civalleri et al. / Chemical Physics Letters 348 (2001) 131±138
Table 4
Convergence data on the test suite of periodic systemsa
System Number of Number of cycles Ei Ef DE
variables
In®nite water chain 15 15 149:945729 149:960431 0.014702
Polyglycine 24 19 408:218296 408:268540 0.050243
Polytetra¯uoroethylene 3 6 466:968596 466:970283 0.001687
a-Al2 O3 slab 5 10 1399:799902 1400:114819 0.314917
a-Cr2 O3 slab 5 18 4622:595509 4622:823020 0.227511
MgO(0 0 1)/CO 4 12 1046:361591 1046:393148 0.031557
a-Al2 O3 2 4 1400:392826 1400:395110 0.002284
a-Cr2 O3 2 9 4623:109982 4623:110039 0.000057
a-Quartz 4 10 1300:382505 1300:383282 0.000777
a-Boron 4 5 292:609911 292:615488 0.005577
C@Si (SC32) 5 10 8892:597943 8892:655827 0.057884
Ice XI 10 15 299:957883 299:965335 0.007452
a-Oxalic acid 21 49 1042:387770 1042:637879 0.250109
Urea 8 15 442:069367 442:084595 0.015228
SOD(Si) 3 13 5201:458862 5201:472245 0.013383
FAU(Si) 10 23 20805:841975 20805:857697 0.015722
Ti±CHA(1:1) 18 39 8620:992411 8620:993034 0.000623
H±CHA(3:1) 38 70 5063:591308 5063:616329 0.025021
H±CHA(3:1)/NH3 50 169 5229:832874 5230:147140 0.314266
a
Ei and Ef : initial and ®nal total energies; DE: gain in total energy at convergence. For the initial geometry see [25] (atomic units).
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