Professional Documents
Culture Documents
Chapter 2: Key Concepts in Catalysis Reaction Coordinate
Chapter 2: Key Concepts in Catalysis Reaction Coordinate
ch/
1 Reaction coordinate
- In a reaction involving more than one elementary step – that is where one or more intermediates are
formed – there is more than one energy barrier (more than one TS).
- The elementary step involving the highest energy barrier going to the TS is the rate-determining step (a).
- Note that the pathway involving the highest energy TS is not necessarily the rate-determining step (b & c).
Page 1
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
2.3 Kinetic and thermodynamic control
- In a reversible reaction, the majority of the product will be the thermodynamic product.
- In an irreversible reaction, the majority of the product may be the kinetic product.
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
3 Catalysis
3.1 Catalyst definition and energy diagram
4 Enantioselective catalysis
- Enantiomeric ratio is directly proportional to the relative rates of formation of the enantiomeric products.
- Enantiomeric ratio is governed by differential activation parameters (∆∆G ‡, ∆∆H‡ and ∆∆S‡).
- R and S are chosen below arbitrarily.
Page 2
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
4.1 Diastereomeric transition states
- Case 1: simple complex with a diastereomeric transition state
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
- Activated complex (TS) most resembles the structure of adjacent reactant, intermediate, or product that is
closest in energy (thermodynamic factor).
- For example, in a highly exothermic reaction, the TS is closer in energy and in structure to the reactant than
the product (early transition state e.g. Grignard reagent addition to carbonyl compounds).
Page 3
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
H+ R R Nu-
R3COH C R3CNu
R E
E TS1
TS2 CH2R
The trans ition s tate s The ralative s tability of
re s e m ble the ge om e try carbocation:
R R of the carbocation CHR2 the TS be com e s m ore
C
inte rm e date , not the s table as the re action
R re actant nor the product. be com e s le s s e ndothe rm ic.
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
R3COH CR3
R3CNu
reaction coordinate reaction coordinate
- In multistep reactions, there may exist an equilibrium between two diastereomeric intermediates.
- The overall enantioselectivity is determined by the difference in the relative heights of the turnover-limiting
barrier (∆∆G‡).
- From the graph below, I1 is more stable than I2 (from ∆∆G). But formation of I2 is more favorable because of
the lower relative activation energy (∆∆G ‡).
I1 gradually reverses back to the starting material (SM) then to I2 (SM, I1 and I2 are in equilibrium).
Page 4
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
4.7 Catalyst resting state
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
5 Modes of binding
10 mol% (R)-BINOL
O OH
10 mol% TiCl2(Oi-Pr)
+ Me TiL*
Me H CF3 CF3
O
Me H
CF3
OH 98% syn
L* =
OH 96% ee H
6 Types of catalysis
6.1 BrØnsted acid catalysis
NMe2
NMe2 NMe2
NMe2
B
H
2 mol% B-H
O N
Toluene, 1 d N O HN O
H Ar t-BuO H C H
O N t-BuO2C H 2 2 B t-BuO2C
t-BuO2C H Ar Ar
H Ar N H N
N
N
N N N
N
B-H = 9-anthryl
Page 6
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
6.3 Transition metal catalysis
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
6.4 Organocatalysis
Ph NH HN CN
HN N O
Ph HN
O OH H
2 mol% Ph NH
O O H N
H CN
HCN H
H N O
toluene, -20 oC H
97% conv., 97% ee
7 Modes of activation
7.1 Electrophile activation
Me Cy 56 96:4 99
Ph Et Ph 66 93:7 99
O R2 Ph N R2 O i-Pr Ph 72 93:7 99
NO2 TMSO N
H O
R1 R1
Page 8
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
8.3 Non-linear effect - (product enantiopurity does not correlate with catalyst enantiopurity)
Me Me Me Me
N R N R
Zn Me Zn Me
HO Ph PhCHO
O O O O hom odim e r form ation
R H Zn Zn
Me Me is re ve rs ible
R = Et R N R N
cat %e e = 15 Me Me Me Me
product %e e = 95 Kho mo
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Me Me Me Me
Me Me
N N
NMe2 R2Zn R Zn
Zn R
OH
Me O O
+ enantiomer Me Me
Khe te ro
DAIB
Me Me
% ee N
product R
Zn Me he te rodim e r is
O O "trappe d" and s low to
Zn re e nte r the catalytic cycle
Me
R N
Me Me
non-linear effect
linear effect
% ee of catalyst
8.4 Autocatalysis – the product formed in the reaction acts as the catalyst
- The Soai reaction
Soai Nature 1995, 378, 767 & Review: Soai Top. Curr. Chem. 2008, 284, 1
Page 9
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Me Me B
Me Me
k1 ROMP
P
rds k2
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
TiCp2 TiCp2
A TiCp2
d[P]/dt = k2[I][B]
Steady state approximation: d[I]/dt = k1[A] - k2[I][B] = 0 k2[I][B] = k1[A]
d[P]/dt = k1[A]
This explains the observed first order in the catalyst and zero order in substrate B.
Page 11
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Denmark JACS 2009, 131, 11770 & JOC 2010, 75, 5558
- Reaction progress kinetics (RPK)
Alternative to the power rate law, which involves performing multiple reactions, reaction progress kinetics
“employs in situ measurements and simple manipulations to construct a series of graphical rate equations
that enable analysis of the reaction to be accomplished from a minimal number of experiments. Such an
analysis helps to describe the driving forces of a reaction and may be used to help distinguish between
different proposed mechanistic models.” Reaction calorimetry is often a method of choice for RPK.
10 Mechanism determination
One can not prove a mechanism, but rather disprove one.
Page 12
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
10.2 Linear free energy relationship (LFER or Hammett analysis)
- Substitution effect can be quantitatively studied using Hammett plots – a plot of log[ksubstituted/kno substitution] vs
sigma () values, characteristic for each substitution group and pattern.
- The slope of this plot is the rho () value.
- Negative means positive change built up (or decrease in negative charge) in the transition state of the
rate-limiting step of the reaction. Positive means the opposite, and = 0 means no substitution effect.
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Other kind of LFERs correlate the rate of a reaction with steric parameters, pKa values, etc
Page 13
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Page 14
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
Me Me Me Me
Me Me H H
H H Me
Ph3P PPh3 S Ph3P S Ph3P Me
Rh Rh Rh
Cl PPh3 Cl PPh3 Cl PPh3
Ph3P Cl PPh3
Rh Rh Wilkins on's catalys t S
Ph3P Cl PPh3
This species has been detected. H2 H2
However, it's not in the actual H
H H Me Me
catalytic cycle.
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
S Ph3P H
Ph3P H Ph3P H Rh
Rh Me Me Cl PPh3
Rh
Cl PPh3 Cl PPh3
PPh3 S Me Me
Me Me
Page 15
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
11.2 Standard Claisen rearrangements: mechanistic and kinetics studies
- Based on the Hammond postulate, the high exothermicity of the aliphatic Claisen rearrangement implies an
early-transition state (resembling the reactant with more bond breaking character) based on the observation
of a secondary deuterium kinetic isotope effect. KIE data and the substitution effect data suggest a
concerted, pericyclic mechanism (though not perfectly synchronous).
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
- Chorismate mutase catalyzes the only known sigmatropic rearrangement (a Claisen rearrangement)
involved in primary metabolism. Rate accelerations on the order of 10 6 over background rate are observed.
The study of this enzyme and the development of small molecule mimetics has been an area of considerable
interest for the past 15–20 years.
Page 16
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
11.3.2 Hydrogen-bonding catalysis
- Chiral hydrogen-bonding organic catalysts are an area of intense interest at the moment where
chiral phosphoric acids, thioureas, or diols are most widely used as the hydrogen bond donors.
- An example below demonstrates that dual, rather than mono, hydrogen-bond activation plays an important
role in rate acceleration in the catalytic Claisen rearrangements.
Ar
O O Cat. krel
N O
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Page 17
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
11.4 Catalytic enantioselective Claisen rearrangement
- Although the enzymatic Claisen rearrangement has long been known from biosynthesis, there have been
relatively few examples of a simple organic catalyst that provides significant rate accelerations and control of
enantioselectivity.
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Jacobsen JACS 2008,130, 9228 & JACS 2011, 133, 5062 (mechanism)
Page 18
OC VI (HS 2015) Bode Research Group http://www.bode.ethz.ch/
11.5 Enantioselective Claisen rearrangement by catalytic generation of a reactive intermediate
- Transition metal catalyzed enantioselective formal Claisen rearrangement via a metal-pi complex
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
- We have devised a catalytic Claisen reaction that overcomes the limitation of slow catalyst turnover by
considering an enantioselective variant of the Coates-Claisen reaction of enols and acetals of unsaturated
aldehydes that would give lactones as a means of catalyst turnover. A chiral NHC was used as the catalyst
for highly enantioselective Claisen rearrangments via the intermediacy of an α,β-unsaturated acyl azolium.
characte rize d by
O
NMR , UV-VIS
Me and HR MS HO
Me
O
O
N N
O O O D H‡ = +15.30 kcal/mol
N O
O Me
B Hc C OTBS DS‡ = – 25.50 cal/K.mol
O C1
H N k obs = – 3.41x10-4 s-1
10 mol% C2 Ar O
Ar rate = -k obs [B]1[A]0.5[C]-0.5
A N N Hd Ar OTBS
Mes
Bode JACS 2010, 132, 8810 & ACIE 2011, 50, 1673
- An aza-Claisen variant of the above reaction has also been achieved. Here, the key α,β-unsaturated acyl
azolium was catalytically generated via an oxidation of the Breslow intermediate instead of an internal redox
reaction.
Page 19