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REVIEW
Mary Grace S. Biagtan, RPh, MS Pharm
Lecturer for Module 2: Biochemistry
Second Semester; AY 2021-2022
BIOCHEMISTRY REVIEW
01. Introduction
03. Carbohydrates
04. Lipids
BIOCHEMISTRY
• the chemistry of life Nucleic Acids Lipids
• focuses on primary metabolites
02
PROTEINS, PEPTIDES &
AMINO ACIDS
Amino Acids
● building units of proteins (monomers of proteins)
● ampotheric in nature: possesses both basic and acidic group
● zwitter ion: a molecule that has (-) charge on one atom and (+)
charge on another atom, but has no net charge
● peptide bond: the bond that joins each amino acid
Structure of an Amino Acid
Serine
Hydroxyl Threonine
Tyrosine
Asparagine
Amide
Glutamine
Sulfhydril Cysteine
01 02
TRYPTOPHAN GLYCINE
Synthesis of 5-
hydroxytryptamine (5-HT) or Heme (hemoglobin)
Serotonin
03 04
02. Polarity
Polar or Non-polar
04 Nutritional Classification
01. pH
Amino Acids With Charged Polar Groups
Acid Glutamic Acid
Aspartic Acid
Basic Histidine
Arginine
Lysine
02. POLARITY Amino Acids With Non-Polar R-Groups
Alkyl R Group Alanine
Valine
Leucine
Isoleucine
Proline
Aromatic Group Phenylalanine
Tryptophan
S-Containing Methionine
02. POLARITY
Amino Acids With Unchanged Polar Groups
R-H Glycine
Hydroxyl Serine
Threonine
Tyrosine
Amide Asparagine
Glutamine
Sulfhydril Cysteine
03. METABOLIC CLASSIFICATION
The carbon skeleton of amino acids can serve as a
precursor for the synthesis of glucose (glycogenic) or fat
(ketogenic) or both.
Glucogenic amino acids generate precursors of glucose or glycogen, such as
pyruvate or a citric acid cycle intermediate.
Ketogenic amino acids generate ketone bodies; fats can be synthesized from
amino acids.
Tyrosine Asparagine
Tryptophan Glutamine
AA AA AA
Peptides
unbranched chain of amino acids, each joined to the next by a peptide bond
that classified by the number of amino acids present in the chain
tripeptide
dipeptide oligopeptide
BIOLOGICALLY IMPORTANT PEPTIDES
01. Peptide Hormone: Vasopressin/Anti-Diuretic Hormone
substance that decreases urine production; causes the kidneys to return more water to the blood
thus decreasing urine volume
01 50-55%
Proteins Carbon
02
• naturally occurring, Oxygen
19-24%
unbranched polymer in
which the monomer units are
03
amino acids Nitrogen
13-19%
• most abundant organic Sulfur Hydrogen
molecules of the living system
05 04
• occur in every part of the cell 0-4% 6-7.3%
CLASSIFICATION OF PROTEINS
01. Functional Classification
based on biological roles/functions
02. Complexity
• Simple Proteins: made up only of amino acid residues
• Conjugated Proteins: in combination with prosthetic group (non-protein)
Contractile/
Actin & Myosin #
Motile
02. COMPLEXITY
SIMPLE PROTEINS EXAMPLES/OCCURRENCE
ovalbumin in egg $
Albumins
serum albumin in blood (
02. COMPLEXITY
CONJUGATED PROSTHETIC
PROTEINS GROUP EXAMPLES/OCCURRENCE
(P +NP) (NP)
Phosphoproteins Phosphoric Acid Casein % & Ovovitellin 0
Fibrous
parallel fibers
and sheets in Collagen, Elastin & Keratin
structural
framework
Globular
compact
spherical forms & Antibodies, Hormones &
insoluble in Albumin
water
3D structure with
Tertiary Disulfide , H-bond, Ionic &
Hydrophobic interaction
determines specificity
& arrangement of polypeptide
Quaternary
chains; multiple identical or
distinct polypeptide chains
METABOLISM
the sum total of all chemical reactions needed to maintain life
combination
Amphibolism
e.g. Kreb’s Cycle
METABOLISM
Enzyme a catalyst, it increases the rate of reaction
Digestion
PROTEIN METABOLISM
Absorption
Transamination
Oxidative Deamination
Urea Cycle
Digestion PROTEIN METABOLISM
• starts in the stomach
• proteins are denatured in the stomach by
the HCl present in gastric juice
• HCl activates the zymogen pepsinogen to
pepsin
• continues to the small intestines with the
release of enzymes in the pancreatic juice
03
ENZYMES & VITAMINS
ENZYMES
proteins that catalyze nearly all the chemical
reactions taking place in the cells of the body
• Work best at temperatures between 35-40°C (optimal: 37°C)
• Activity is dependent on pH of the medium
TERMS TO REMEMBER
CO-FACTOR HOLOENZYME
CLASSES OF ENZYMES
DESCRIpTION EXAMPLES/OCCURRENCE
catalyze the breaking a chemical bond
between 2 parts of a molecule through other
Lyase
means other than hydrolysis & oxidation
(Dehydratase & Decarboxylase)
-rearrangement of atoms of a substrate in a
reaction, converting it into a molecule isomeric
Isomerase
with itself
(Racemase & Phosphoglucoisomerase)
joins two molecules with the action of ATP
Ligase
(DNA Ligase)
MODELS OF ENZYMATIC ACTION
Lock and Key Hypothesis
best explains the enzyme-substrate
• the active site has a distinctive configuration
• only the specific substrate molecules with the right shape can fit
into the active site to form enzyme-substrate complex
FAT-SOLUBLE WATER-SOLUBLE
• A, D, E, K
• B1, B2, B3, B5, B6, B9, B12,
• released, absorbed, & transported
B15, B17, C, H,
with the fat of the diet
• not stored in the body
• not readily excreted in the urine
• excreted in the urine
• significant quantities are stored in
the liver and adipose tissue
Other Names
Functions
Deficiencies
Vitamin Other Name/s & Deficiency
B1 Thiamine ❗ Beriberi, Wernicke-Korsakoff (CAN)
Vitamin H D-Biotin & Vit. B7 ❗ Impaired fat and CHO metabolism &
dermatitis
Vitamin K Menadione, Menaquinone, Phylloquinone ❗ Hemorrhage &
capillary fragility
04
CARBOHYDRATES &
RELATED COMPOUNDS
CARBOHYDRATE
a polyhydroxy aldehyde, a polyhydroxy ketone, or a compound
that yields polyhydroxy aldehydes or polyhydroxy ketones upon
hydrolysis
03 04
POINTS TO REMEMBER
MONOSACCHARIDES
POINTS TO REMEMBER
PENTOSES
OLIGOSACCHARIDE
DEXTRIN
product of starch
degradation
POINTS TO REMEMBER ABOUT POLYSACCHARIDES
HOMOPOLYSSACCHARIDES (same)
STARCH CELLULOSE
storage polysaccharide structural polysaccharide
in plants in plants
⍺ 1-4/⍺ 1-6 β-1,4
GLYCOGEN CHITIN
storage polysaccharide structural polysaccharide in
in humans insects & crustaceans
⍺ 1-4/⍺ 1-6 N-acetylglucosamine subunits
For Starch and Deep blue for starch & Brown for
Iodine Test
Glycogen Glycogen
Aniline Acetate For Pentose Bright Red color on the filter paper
Test
GLUCOSE CATABOLISM
oxidation of glucose to produce ATP is also known as cellular respiration, and it involves four
sets of reactions: glycolysis, the formation of acetyl coenzyme A, the Krebs cycle, and the
electron transport chain
Glycolysis AKA
Electron
Embden- Formation of
Krebs Cycle Transport
Meyerhof Acetyl CoA
Reaction
pathway
anaerobic
aerobic cellular aerobic cellular aerobic cellular
cellular
respiration respiration respiration
respiration
GLUCOSE CATABOLISM
Glycolysis AKA Embden-Meyerhof
pathway
glucose ➡ 2 pyruvate + 2 NADH+H
1 mole of glucose ➡ 6-8 ATPs
anaerobic cellular respiration
(cytoplasm)
Three distinct phases:
A. Energy investment phase or priming stage
B. Splitting phase
C. Energy generation phase.
3. Oxidation and
Isocitrate dehydrogenase ⍺-Ketoglutarate (Keep)
Decarboxylation
4. Oxidation and ⍺-Ketoglutarate
Succinyl CoA (Selling)
Decarboxylation dehydrogenase
5. Phosphorylation Succinyl CoA synthetase Succinate (Shoes)
GLUCOSE CATABOLISM
Electron Transport Chain
NADH+H & FADH2 ➡ ATP + H20
the reduction of oxygen from the coenzymes NAD and FAD to water and
the series of exergonic reactions release small amounts of energy to
form ATP
chemiosmosis: passage of electrons along the transport chain) with the
pumping of H+
GLUCOSE RELEASE & ANABOLISM
AA or lactic acid
➡ pyruvic acid ➡ glucose
➡ Krebs cycle
Glucose release
glycogen phosphorylase
Glycogen (n) ➡ Glycogen (n-1)
Glycogenesis Gluconeogenesis
Glycogenolysis
store glucose glucose from fats and
release glucose
AA
☝ Significance:
produce lipids: fatty tissue, the liver, mammary glands, and the
adrenal cortex (an active producer of steroid lipids)
☝ Site:
Cytosol
PENTOSE PHOSPHATE PATHWAY
• synthesis of the coenzyme NADPH
needed in lipid biosynthesis
• production of ribose 5-phosphate, a
pentose derivative needed for the
synthesis of nucleic acids and
many coenzymes
• maintaining reduced Glutathione
inside RBCs
Oxidative Non-Oxidative
• glucose 6-phosphate ➡ ribulose • ribulose 5-phosphate ➡ ribose 5-