Professional Documents
Culture Documents
ABSTRACT
Endophytic fungi are microscopic living organisms that live in plant tissues (leaves, fruits,
seeds, stems and roots) at certain periods by forming colonies without harming their hosts, even
having mutually beneficial relationships. Endophytic fungi generally produce secondary
metabolites that have beneficial biological activities such as antibacterial, antioxidant,
antiviral, antiprotozoal, antidiabetic, and anticancer. Endophytic fungi can be found in various
types of plants, especially medicinal plants, such as Syzygium zeylanicum, one of the many
medicinal plants found in Indonesia. This study aimed to obtain endophytic fungal isolates
from the leaves of Syzygium zeylanicum L., to characterize endophytic fungi, and to test the
antibacterial and antioxidant activity of the obtained endophytic mushroom extracts.
Characterization of endophytic fungi was carried out morphologically and fungi that showed
high bioactivity were characterized molecularly. Antibacterial activity was carried out by disc
diffusion method and antioxidant activity by DPPH method. In this study, 4 isolates of
endophytic fungi were obtained. Based on the morphological characterization of the
endophytic fungi, they are Penicillium citrinum (Code ZL6), Colletotrichum lindemuthianum
(Code ZL8), Aspergillus nidulan (Code ZL9), Scopulariopsis asperula (Code ZL10).
Penicillium mushroom extract (Code ZL6) provided strong antibacterial activity against 4
bacterial pathogens (71% against E. coli; 74% against S. aureus; 76.1% against S. typi and
76.9% against B. subtilis). The antioxidant activity of all fungal endophytic extracts showed a
very strong activity (IC50 ZL6 extract = 7.29 g/mL). The potential endophytic fungus ZL6
based on molecular analysis is Penicillium citrinum.
Antioxidant activity can be found from various phytochemical studies, one of which is
the plant Syzygium zeylanicum. Research by Nomi et al. (2012) found zelaniin A compounds
in S. zeylanicum leaves which showed strong antioxidant activity of 19.18 ± 0.24 and 4.37 ±
0.29 (mol TE / mol) in the DPPH and ORAC tests. , and nearly 80% lipid peroxidation
inhibition at the level of 100 g/mL (78.76 ± 0.21%). In addition, the plant extract of S.
zeylanicum showed the presence of alkaloids, glycosides, phenolics, flavonoids, steroids,
terpenoids and saponins which showed antioxidant activity from the test results using nitric
oxide of 78.79% (Anoop & Bindu, 2014). The accumulation of bioactive compounds can be
supported by the role of endophytic fungi by helping to increase the production of secondary
metabolites in their host plants (Gupta et al., 2020; Khare et al., 2018; Yuan et al., 2019).
Besides the impact of free radicals, various infectious diseases caused by pathogenic
microbes are also of concern today. Pathogenic microbes include Salmonella thypi, Eschericia
coli, Shigella dysenteriae., Staphylococcus aureus. Microbial infections pose a serious
challenge to human health because of the nature of microbial resistance to antibiotics (Dos
Santos et al., 2015). It takes a strategy to fight pathogenic microbes by finding new anti-
bacteria, where one of the potential sources comes from plants.
Endophytic fungi, especially those that live in medicinal plant tissues, are often used as
a source for the discovery of bioactive compounds. Some plants can degrade the bioactive
compounds they contain to endophytic microbes that grow in their tissues, so that these
endophytic microbes can produce the same compounds as their hosts. In our previous study
(Syarifah et al., 2021) we found an antibacterial compound p-hydroxybenzaldehyde from
endophytic fungi isolated from the root bark of Syzygium zeylanicum. This p-
hydroxybenzaldehyde compound is also produced by its host. To continue our series of
research, in this paper we report the bioactive potential of endophytic fungi from other parts of
the S. zeylanicum plant, namely the leaves and bark. This Syzygium zeylanicum plant has been
used by people in Indonesia as a medicinal plant related to pathogenic bacterial infections and
the effects of free radicals in the body.
2. METHODOLOGY
2.1 Plant Material
Endophytic fungi were isolated from the root bark of S. zeylanicum (L.) from Penukal
Abab Lematang Ilir (Pali) Regency, South Sumatra. Plants have been identified in the
laboratory of the Center for Biological Research – LIPI in the field of botany. Sampling was
carried out in a fresh state in July 2020. Endophytic fungi were isolated from leaf organs and
stem bark. The leaves used are the leaves in the third position of the test. The root bark used is
the root bark that comes from the roots in the soil.
Figure 1. Colony and microscopic morphology of endophytic fungal species; ZL6(1); ZL8(2); ZL9(3); ZL10
(4); A- pengamatan makroskopis ; B- pengamatan mikroskopis
Table 1. Colony characteristics of endophytic fungi from the leaves and trunk bark of S. zeylanicum
Decription ZL6 ZL8 ZL9 ZL10
Reverse colony Dark green Light green White and orange in Light orange and
Macroscopic
center white
Structure Velvety Velvety Velvety Cottony
Elevation Rugose Flat Flat Flat
Pattern Zonate Zonate Zonate Zonate
Exudate drop No No Yes No
Radial Line Yes No No Yes
Coencentric line No No Yes No
Spore Conidia Conidia Conidia Conidia
Shape Subglobose Phialosporous Phialosporous Phialosporous
Microscopic
Table 2. Antibacterial and Antioxidant Activities of Endophytic Fungi from S. zeylanicum. leaves
Ethylacetate % Antibacterial activity
Antioxidant
Mushroom Genus/Species extract
activity IC50
code ofIdentification weight E. coli S. aureus S. thypi B. subtilis
(µg/mL)
(gram)
13.9 ± 15.2 ± 16.0 ±
Penicillium 18.3 ± 0.70 7.29
5.8 1.55 1.00 0.30
citrinum *** ****
ZL6 *** *** ***
16.4 ± 12.2 ± 17.4 ±
Colletotrichum 18.2 ± 0.41 3.99
5.2 0.41 0.74 0.62
lindemuthianum *** ****
ZL8 *** ** ***
15.3 ± 12.9 ± 15.0 ±
Aspergillus 14.4 ± 0.43 3.85
5.5 1.64 0.98 0.37
nidulan ** ****
ZL9 *** ** ***
17.1 ± 13.0 ± 14.2 ±
Scoplulariopsis 66.6 ± 0.44 7.69
5.3 0.39 0.65 0.37
asperula ** ****
ZL10 *** ** **
Ascorbic
Tetracycline 30µg/disc Acid 30µg /
Positive control
disc
23.8
19.5 ± 1.4 20.5±1.7 21.0 ± 1.0 2.73
± 2.3
*** *** *** ****
***
Note : * = Low antibacterial or weak antioxidant; ** = moderate antibacterial or antioxidant; *** = strong antibacterial or
antioxidant ; **** = very strong antibacterial or antioxidant.
ZL6 extract has a broad antibacterial spectrum where its activity is strong on both
Gram+ and Gram-. Phenolic compounds and flavonoids are dominant in plants S. zeylanicum
makes it have strong antibacterial activity (Deepika et al., 2014; Microbiol et al., 2016;
Palanisamy, Ling, Manaharan, & Appleton, 2011; Shilpa & Krishnakumar, 2015).
Figure 4. SZL6 Phylogenetic Tree Construction using the Neighbor-Joining method (Saitou &
Nei, 1987) with bootstrap values (1000 replicates) displayed next to branches (Felsenstein,
1985). This analysis involved 18 nucleotide sequences. There are a total of 540 positions in the
final dataset. Evolutionary analysis carried out in MEGA11 (Tamura et al., 2021).
The results of the phylogenetic tree reconstruction show the relationship between
ZL6 and Penicillium citrinum. Branching on ZL6 with Penicillium citrinum forms a straight
line with a bootstrap value of 100%. The straight line on the branching of the phylogenetic tree
shows that ZL6 with Penicillium citrinum is closely related. According to Fitmawati et al.
(2013) the evolutionary level of a species is indicated by different line lengths in the
phylogenetic tree. The farther evolutionary distance is indicated by the longer line, while the
closer the evolutionary distance of a species is indicated by the shorter line.
Isolation of bioactive compounds was carried out on selected ethyl acetate extracts with
the highest antibacterial and antioxidant activity, namely isolate ZT2. Concentrated ethyl
acetate extract (2.0 g) was separated by gravity column chromatography (CC) method with a
gradient eluent system, namely 100% n-hexane (100 mL) eluent, a mixture of n-hexane and
ethyl acetate with increasing polarity, (n- hexane:ethyl acetate 9:1 (100 mL), 8:2 (100 mL), 7:3
(100 mL), 5:5 (100 mL); 2;8 (100 mL), 100% ethyl acetate (100 mL) mL), and ethyl acetate
and methanol (9:1 30 mL), 8:2 (30 mL), 7:3 (30 mL)). The stationary phase used was silica gel
60 G (70-230 mesh). The separation results were collected using vials and obtained as many
as 80 vials. The eluate was then analyzed using thin layer chromatography (TLC) with a mixed
eluent of n-hexane and ethyl acetate (5:5). TLC with similar chromatogram patterns were
combined into one fraction. Based on the results of the chromatogram pattern obtained 4
fractions. Namely F1-F4. In the F2 fraction, white crystals were formed and after being purified
with n-hexane, compound 1 was obtained in the form of white crystals weighing 37 mg.
The 1H-NMR spectrum of compound A (Figure 4.38A) shows the presence of eight
proton signals including two aromatic dublet signals with the integration of 2 protons, namely
7.70 (1H, d, J= 8.5 Hz) and 8.17 (1H, d, J= 8.5 Hz). ortho plot setting. This indicates that
compound A is a para-substituted aromatic compound, so it has two pairs of equivalent protons.
In addition, there are six signals on the chemical shift H < 6.5 ppm, namely at H 1.96 (3H, s);
4.21 (1H, m); 4.32 (1H, m); 4.42 (1H, m); 5.23 (1H,s); and 6.32 (1H, d, J= 1.0 Hz), which are
oxygenated protons of methyl, methine and methine. Thus compound A was identified as a
para-substituted aromatic compound having oxygenated hydroxyl, methyl, methine, and
methine groups.
A B
Figure 5. Spectrum of 1H-NMR (A) and 13C-NMR (B) from compound A (1H-500 MHz in aceton)
The HMBC spectrum (Figure 6) showed a 1H-13C correlation through two or three
bonds. The aromatic proton signal at H 8.17 ppm correlates with three aromatic carbon atoms
at C 123.1; 147.4; and 149.8 ppm, including the carbon atom equivalent. The aromatic proton
at H 7.70 ppm correlates to two aromatic carbon atoms at C 127.4; 147.4 ppm and oxygenated
carbon in the aromatic substituent at C 70.4 ppm. The methine proton is oxygenated at H 5.23
ppm correlated with the two aromatic carbons at 127.4 and 149.8 ppm. The correlation
indicates that the oxygenated methine group is directly attached to the aromatic ring and is
para-substituted with a hydroxyl group. Furthermore, the correlation of the two methylene
protons namely H 4.21 (1H, m) and 4.32 (1H, m) is seen for the same carbon atom at C 54.3;
70.4; and 170.1 ppm and the correlation of proton methine at H 4.42 ppm to carbon C 63.1
ppm indicating that the methylene proton is bound to the methine carbon and the carbonyl ester
carbon in the open chain. The spectrum also shows the correlation of the methyl proton at H
1.96 ppm to the carbonyl ester carbon atom at C 170.1 ppm which strengthens the indication
of the presence of an ester carbonyl group in the side chain. This HMBC spectrum analysis
indicated that the lactone ring in addition to binding to the aromatic ring and methyl acetate,
also binds to the hydroxyl group. The 1D and 2D NMR spectral data for compound 1 are shown
in Table 3.
Table 3. Data of NMR from compound A, in 1H-500 MHz; 13C-125 MHz in CDCl3
δH ppm (ƩH. Multiplicity
No C δC ppm Type of C HMBC
(Hz))
2 70.4 CH 5.23 (1H, s) 127.4; 149.8
3 54.3 CH 4.42 (1H, m)
4 66.5 CH 6.32 (1H, d, J= 1.0 Hz)
5 163.8 C
6 63.1 CH2 A. 4.32 (1H, m) 54.3; 70.4; 170.1
B. 4.21 (1H, m)
7 170.1 C
8 19.9 CH3 1.96 (3H, s) 170.1
1’ 149.8 C
2’ 127.4 CH 7.70 (1H, d, J= 8.5 Hz) 70.4; 127.4; 147.4
3’ 123.1 CH 8.17 (1H, d, J= 8.5 Hz) 123.1; 147.4;
149.8
4’ 147.4 C
5’ 123.1 CH 8.17 (1H, d, J= 8.5 Hz) 123.1; 147.4;
149.8
6’ 127.4 CH 7.70 (1H, d, J= 8.5 Hz) 70.4; 127.4; 147.4
4. CONCLUSIONS
Endophytic fungi have been successfully cultured and 4 isolates of fungi were obtained
from leaves (coded ZL6, ZL8, ZL9, ZL10). Based on their morphological characterization, the
endophytic fungi were included in the genus Penicillium (1 isolate), Colletotrichum (1 isolate),
Aspergillus (1 isolate), Scopulariopsis (1 isolate). All endophytic fungi have potential
antibacterial and antioxidant activity. The molecular results of the isolate with the highest
antibacterial showed that the isolate ZL6 was identified as Penicillium citrinum with a
compound structure (4-hydroxy-2-(4-hydroxyphenyl)-ɣ-butyrolactone-3-yl)methyl acetate)
ACKNOWLEDGEMENTS
The authors thank to the SP DIPA Kemenristek Republik Indonesia, which provided research
funding through Hibah Disertasi Doktor 2021, with contract no. 057/E5/PG.02.00.PT/2022.
REFERENCES
Anoop, M. V., & Bindu, A. R. (2014). Pharmacognostic and physico-chemical studies on
leaves of Syzygium zeylanicum (L.) DC. International Journal of Pharmacognosy and
Phytochemical Research, 6(4), 685–689.
Budiono, B., Elfita, E., Muharni, M., Yohandini, H., & Widjajanti, H. (2019). Antioxidant
activity of Syzygiumsamarangense L. And Their Endophytic Fungi. Molekul, 14(1), 48–
55.
Deepika, N., Saranya, J., Eganathan, P., & Sujanapal, P. (2014). Antimicrobial Activity of
Syzygium zeylanicum (L.) DC. and Syzygium hemisphericum (Walp.) Alston. Journal
of Biologically Active Products from Nature, 4(2), 120–124.
https://doi.org/10.1080/22311866.2014.890065
Dos Santos, L. ., Da Silva, L. ., Da Silva, M. ., De Araujo, J. ., Cavalti, M.D.A, S., & Lima,
V. . (2015). Antibacterial Activity Of Endophytyc Fungi From Leaves of Indigofera
suffruticosa miller (Fabaceae). Frontiers in Microbiology, 6, 350.
Felsenstein, J. (1985). Evolution - July 1985 - Felsenstein - CONFIDENCE LIMITS ON
PHYLOGENIES AN APPROACH USING THE BOOTSTRAP. Evolution, 39(4), 783–
791.
Fitriarni, D., & Kasiamdari, R. S. (2018). Isolation and Identification of Endophytic Fungi
from Leave and Stem of Calopogonium mucunoides. Journal of Tropical Biodiversity
and Biotechnology, 3(1), 30. https://doi.org/10.22146/jtbb.32477
Goswami, S. O. U. R. E. N., & Ray, S. A. N. J. I. B. (2017). Relative total phenolics content,
1, 1-diphenyl picrylhydrazyl free radical scavenging and total antioxidant potentials of
seven Indian medicinal plant parts’ aqueous extracts. International Jourdnal of
Pharmacy and Biological Sciences, 8, 283–291.
Gupta, S., Chaturvedi, P., Kulkarni, M. G., & Van Staden, J. (2020). A critical review on
exploiting the pharmaceutical potential of plant endophytic fungi. Biotechnology
Advances, 39, 107462. https://doi.org/10.1016/j.biotechadv.2019.107462
Hanin, N. A., & Fitriasari, P. D. (2019). Identification of Endophytic Fungi from Fruits and
Seeds of Jambolana (Syzygium cumini L.) Skeels. IOP Conference Series: Earth and
Environmental Science, 276(1). https://doi.org/10.1088/1755-1315/276/1/012060
Khare, E., Mishra, J., & Arora, N. K. (2018). Multifaceted interactions between endophytes
and plant: Developments and Prospects. Frontiers in Microbiology, 9(NOV), 1–12.
https://doi.org/10.3389/fmicb.2018.02732
Kusumaningrum, V. A., Hanapi, A., Ningsih, R., Nafiah, S. A., & Nadhiroh, A. (2021).
Synthesis, Characterization, and Antioxidant Activity of 2-methoxy-4 - ((4-methoxy
phenyl imino) -methyl) phenol compounds. Proceedings of the International Conference
on Engineering, Technology and Social Science (ICONETOS 2020), 529(Iconetos
2020), 292–296. https://doi.org/10.2991/assehr.k.210421.042
Li, X. L., Ojaghian, M. R., Zhang, J. Z., & Zhu, S. J. (2017). A new species of Scopulariopsis
and its synergistic effect on pathogenicity of Verticillium dahliae on cotton plants.
Microbiological Research, 201(April), 12–20.
https://doi.org/10.1016/j.micres.2017.04.006
Luo, H., Qing, Z., Deng, Y., Deng, Z., Xia’an, T., Feng, B., & Lin, W. (2019). Two
Polyketides Produced by Endophytic Penicillium citrinum DBR-9 from Medicinal Plant
Stephania kwangsiensis and Their Antifungal Activity against Plant Pathogenic Fungi.
Natural Product Communications, 14(5). https://doi.org/10.1177/1934578X19846795
Nomi, Y., Shimizu, S., Sone, Y., Tuyet, M. T., Gia, T. P., Kamiyama, M., & Otsuka, Y.
(2012). Isolation And Antioxidant Activity Of Zeylaniin A, A New
Macrocyclicellagitannin From Syzygiumzeylanicum Leaves. Journal of Agricultural
and Food Chemistry, 60(41), 10263–10269.
Pitt, J. I., & Hocking, A. D. (2009). Fungi and Food Spoilage (Google eBook). 536.
http://books.google.com/books?id=-B1s6GhOlzkC&pgis=1
Russo, M. L., Pelizza, S. A., Cabello, M. N., Stenglein, S. A., Vianna, M. F., & Scorsetti, A.
C. (2016). Hongos endófitos aislados de cultivares de soja (Glycine max L. Merr) y
maíz (Zea mays L.) presentes en áreas agrícolas argentinas. Revista Argentina de
Microbiologia, 48(2), 154–160. https://doi.org/10.1016/j.ram.2015.11.006
Syarifah, S., Elfita, E., Widjajanti, H., Setiawan, A., & Kurniawati, A. R. (2021). Diversity of
endophytic fungi from the root bark of Syzygium zeylanicum , and the antibacterial
activity of fungal extracts , and secondary metabolite. Biodiversitas, 22(10), 4572–4582.
https://doi.org/10.13057/biodiv/d221051
Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: Molecular Evolutionary Genetics
Analysis Version 11. Molecular Biology and Evolution, 38(7), 3022–3027.
https://doi.org/10.1093/molbev/msab120
Walsh, T. J., Hayden, R. T., & Larone, D. H. (2018). Larone’s Medically Important Fungi. In
Larone’s Medically Important Fungi. https://doi.org/10.1128/9781555819880
Wang, W. X., Kusari, S., Laatsch, H., Golz, C., Kusari, P., Strohmann, C., Kayser, O., &
Spiteller, M. (2016). Antibacterial Azaphilones from an Endophytic Fungus,
Colletotrichum sp. BS4. Journal of Natural Products, 79(4), 704–710.
https://doi.org/10.1021/acs.jnatprod.5b00436
Watanabe, T. (2010). Pictorial Atlas of Soil and Seed Fungi. In Pictorial Atlas of Soil and
Seed Fungi. https://doi.org/10.1201/ebk1439804193
Yang, L., Zhou, X. K., Wang, L., Shi, H. ., Liu, X. ., & Wang, Y, G. (2018). Isolation Of
Endophytic Fungi From Thermopsis Lanceolata And Their Antioxidant Activity. Acta
Medica Mediterranea, 34, 27–31.
Yuan, Z., Tian, Y., He, F., & Zhou, H. (2019). Endophytes from Ginkgo biloba and their
secondary metabolites. Chinese Medicine (United Kingdom), 14(1).
https://doi.org/10.1186/s13020-019-0271-8