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OUTCOME-BASED EDUCATION
Science GRADE
General Biology 2 12
General
3
LEARNING QUARTER
MODULE WEEK 1-2
QUARTER 3
WEEK 1-2
Recombinant DNA
Development Team
This module is about the processes involved in genetic engineering and the
applications of recombinant DNA technology. Genetic engineering means altering genes in a
living organism to produce genetically modified organisms (GMOs). It alters the genetic
structure of an individual by either inserting or removing DNA. In addition, one benefit of
recombinant DNA technology is improving health conditions by developing new vaccines and
pharmaceuticals. After completing the lessons and activities, you are expected to become the
learner as expected and required by the following:
Learning Objectives
1. Explain the meaning of genetic engineering;
2. Enumerate the steps in genetic engineering;
3. Discuss the processes of genetic engineering;
4. Describe some methods to introduce DNA into cells;
5. Describe steps in PCR to amplify and detect a gene of interest;
6. Compare the advantages and disadvantages of using GMOs; and
7. Give examples of products from recombinant DNA technology;
Note: All the answers to the activities and assessments must be written on a separate sheet.
Directions: Read each question carefully and choose the letter of the correct answer. Write
the chosen letter on a separate sheet of paper.
1. One advantage of genetic engineering in agriculture is ________.
A. clone plants B. increase yield
C. cure genetic diseases D. mass production of plants
2. Plasmids are used to _________.
A. join genes together B. make protein in bacterial cells
C. carry genes into bacterial cells D. cut genes out of chromosomes
4. Restriction fragments of DNA are typically separated from one another by which process?
A. Centrifugation B. Filtering
C. Gel electrophoresis D. PCR
Lesson
Recombinant DNA
1
In order to survive, man has successfully domesticated selected plants and animals.
He has taken an active part in choosing desired traits of plants and animals. Traits that were
considered valuable (i.e., high fruit yield; high milk production, etc.) were sought out and
propagated. The processes involved may include classical breeding practices such as
controlled pollination of plants, and the mating of animals with desired traits. In today’s modern
science, molecular biology techniques are being employed in the insertion and expression of
proteins in different organisms for various purposes.
What’s New
The latter half of the twentieth century began with the discovery of the structure of
DNA, then progressed to the development of the basic tools used to study and manipulate
DNA. These advances, as well as advances in our understanding of and ability to manipulate
cells, have led some to refer to the twenty-first century as the biotechnology century. The rate
of discovery and of the development of new applications in medicine, agriculture, and energy
is expected to accelerate, bringing huge benefits to humankind and perhaps also significant
risks. Many of these developments are expected to raise significant ethical and social
questions that human societies have not yet had to consider (OpenStax, Nd). Genetic
engineering is a method that uses recombinant DNA (rDNA) technology to alter
the genetic makeup of an organism. The modification of an organism’s DNA is being done to
achieve desirable traits. Traditionally, humans have manipulated genomes indirectly by
controlling breeding and selecting offspring with desired traits. Genetic engineering involves
What is It
In addition, as stated by Hudson Alpha Institute for Biotechnology (n.d.), for centuries,
humans have used selective breeding techniques to modify the characteristics of both plants
Genetic engineering involves the use of molecular techniques to modify the traits of a
target organism. The modification of traits may involve:
I. Introduction of new traits into an organism
II. Enhancement of a present trait by increasing the expression of the desired gene
III. Enhancement of a present trait by disrupting the inhibition of the desired genes’
expression.
Genetic engineering uses recombinant DNA (rDNA) technology to alter the
genetic makeup of an organism. Recombinant DNA technology is a technique that alters the
phenotype of an entity (host) when a genetically modified vector is introduced and
incorporated into the genome of the host. Thus, the process entails introducing a foreign
fragment of DNA into the genome containing the desired gene. This gene that is introduced is
referred to as the recombinant gene and the technique is known as the recombinant DNA
technology. Embedding the gene of interest into the genome of the host is not as simple as it
sounds. Developing a recombinant DNA involves a series of sequential steps which are
discussed below.
Isolation of DNA
Being a nucleic acid enclosed within the nucleus, isolation of DNA is not an easy task.
Isolation of DNA is an enzymatically controlled process where the plant or animal cells are
treated with certain enzymes. Enzymes such as cellulase (plant cells), lysozyme (bacteria)
and chitinase (fungi) are used to isolate pure DNA from the cells.
Fragmentation of DNA
The isolated and purified DNA is treated with restriction endonucleases which cut the
DNA into fragments. The restriction enzymes utilized in recombinant DNA technology are
significant to detect the location at which the desired gene is introduced into the vector
genome. The restriction endonucleases are sequence-specific, typically palindrome
sequences and snip the DNA at specific points. They inspect the length of DNA and trims it at
particular sites known as the restriction site. The desired genes and the vectors are snipped
by the same restriction enzymes to acquire the complementary sticky ends. This ensures the
task of ligases for binding the required gene to the vector is easier.
• Biolistic. In this technique, a “gene gun” is used to fire DNA-coated pellets on plant
tissues. Cells that survive the bombardment, and are able to take up the expression
plasmid coated pellets and acquire the ability to express the designed protein.
• Plasmid insertion by Heat Shock Treatment. Heat Shock Treatment is a process
used to transfer plasmid DNA into bacteria. The target cells are pre-treated before the
procedure to increase the pore sizes of their plasma membranes. This pretreatment
(usually with CaCl2) is said to make the cells “competent” for accepting the plasmid
DNA. After the cells are made competent, they are incubated with the desired plasmid
at about 4°C for about 30min. The plasmids concentrate near the cells during this time.
Afterwards, a “Heat Shock” is done on the plasmid-cell solution by incubating it at 42°C
for 1 minute then back to 4°C for 2 minutes. The rapid rise and drop of temperature
are believed to increase and decrease the pore sizes in the membrane. The plasmid
DNA near the membrane surface is taken into the cells by this process. The cells that
took up the plasmids acquire new traits and are said to be “transformed”.
• Electroporation. This technique follows a similar methodology as Heat Shock
Treatment, but the expansion of the membrane pores is done through an electric
“shock”. This method is commonly used for insertion of genes into mammalian cells.
PCR Amplification
Once a desired trait is chosen, information must be acquired for either its detection or
expression in a given organism.
1. Detection
Some researchers may be interested in determining if a given gene/trait is available in a
particular organism. If no previous research provides this information, researchers may
test the DNA of different organisms for the presence of these specific genes. A technique
that allows the detection of specific genes in target organisms is called PCR.
The following table shows examples of modified traits using cloned genes and their
applications:
Genetically transformed plants which contain foreign genes are called transgenic
plants. Resistance to diseases, insects and pests, herbicides, drought; metal toxicity
tolerance; induction of male sterility for plant breeding purpose; and improvement of quality
can be achieved through this recombinant DNA technology. Golden rice in the Philippines to
boost Vitamin A is an example.
Applications in Medicines:
Biotechnology, especially genetic engineering plays an important role in the production of
antibiotics, hormones, vaccines and interferon in the field of medicines.
1. Production of Antibiotics:
Penicillium and Streptomyces fungi are used for mass production
of famous antibiotics penicillin and streptomycin. Genetically efficient Figure 8. Antibiotic capsule. Taken from
strains of these fungi have been developed to greatly increase the yield https://hips.hearstapps.com/netdoctor.
cdnds.net/15/51/1450185850-g-
of these antibiotics. antibiotics-496660071.jpg
3. Production of Vaccines:
Vaccines are now produced by transfer of antigen
Figure
coding genes to disease causing bacteria. Such antibodies 10.https://images.theconversation.com/files/
provide protection against the infection by the same bacteria 353278/original/file-20200817-24-6fm2d4.jpg?ixl
or virus. ib=rb-1.1.0&rect=6%2C4%2C824%2C553&q=45&au
to=format&w=926&fit=clip
4. Production of Interferon:
Interferon’s are virus-induced proteins produced by virus-infected
cells. Interferon is antiviral in action and act as first line of defense
against viruses causing serious infections, including breast cancer
and lymph nodes malignancy. Natural interferon is produced in very
small quality from human blood cells. It is thus very costly also. It is
Figure 11 Interferon. (source:
now possible to produce interferon by recombinant DNA technology https://www.si.edu/object/intron-
at much cheaper rate. interferon-alfa-2b-recombinant-10-
million-iu%3Anmah_1000951)
6. Gene Therapy:
Genetic engineering may one day enable the medical scientists to replace the
defective genes responsible for hereditary diseases (e.g., haemophilia, phenylketonuria,
alkaptonuria) with normal genes. This new system of therapy is called gene therapy.
The following table shows some medically useful recombinant products and their applications:
8. Diagnosis of Disease:
Recombinant DNA technology has provided a broad range of tools to help physicians
in the diagnosis of diseases. Most of these involve the construction of probes: short segments
of single stranded DNA attached to a radioactive or fluorescent marker. Such probes are now
used for identification of infectious agents, for instance, food poisoning Salmonella, Pus
forming Staphylococcus, hepatitis virus, HIV, etc. By testing the DNA of prospective genetic
disorder carrier parents, their genotype can be determined and their chances of producing an
afflicted child can be predicted.
Examples:
Pros
• GMO practices can be used to produce “designer” crops, which have more nutrients,
grow quicker and produce more yield, are more resistant to pesticides and use less
fertilizer.
• Artificially implanting DNA from one species to another can save many, many years of
research. Waiting for the unpredictable nature of traditional breeding methods can take
decades to achieve the required equilibrium; such a goal can be reached
instantaneously with GMO.
• GMO experimentation can be used to manipulate animal (and, theoretically, human)
cells to be healthier or desirable. For example, the article, Scientists One Step Closer to
Male Contraceptive Pill, talks about how genetically-modified mice are helping to
research possible male contraception.
• GMOs have been around for almost 20 years, so health concerns related to them should
have become apparent by now.
• Change (and specifically, unnatural change) can be good. For example, cleaning and
cooking our food may not be natural but it is beneficial.
Cons
• Studies have shown that genetically modified corn and soy fed to rats led to a higher
risk of them developing liver and kidney problems. These health risks may not be
transferable to humans, but they illustrate the unpredictable nature of GMOs on living
things.
• GMOs are not always tested thoroughly. The shortest GMO testing times are a mere 90
days, which many fear is simply not enough time to ascertain all of the risks.
• Transgenic modification produces organism types which would never occur naturally,
making them highly unpredictable.
• GMOs could affect those with allergies in unpredictable ways.
What’s More
Genetic engineering has given the world a promising future. Some benefits of genetic
engineering include increased crop yields in the field of agriculture, reduced costs for food or
drug production, and also medical benefits like production of vaccines.
1. Genetic engineering is the direct modification of an organism’s genome, which is the list
of specific traits (genes) stored in the DNA.
2. Genetic engineering is accomplished in three basic steps. These are (1) The isolation of
DNA fragments from a donor organism; (2) The insertion of an isolated donor DNA
fragment into a vector genome and (3) The growth of a recombinant vector in an
appropriate host.
3. Genetic engineering has its advantages and disadvantages.
What I Can Do
Article:
Hepatitis B is a liver disease caused by HBV (hepatitis B virus). The vaccine developed
to prevent infection by this virus consists of little bits of HBV that help the body defend itself
against the whole virus. Production of this vaccine consists of producing HBV fragments... a
case made to order for microorganisms! The first hepatitis B vaccine consisted of virus
fragments, isolated from sick individuals' blood, likely to be recognized by the body's defenses.
When administered to healthy people, these fragments allowed to the body to rapidly
recognize the entire virus and eliminate it before it could cause infection. But this vaccination
technique was not without its hazards. Despite purification procedures, a complete virus
sometimes contaminated the vaccine resulting in a healthy person contracting the very
disease the vaccine was meant to prevent! In addition, the use of infected individuals as the
source of the vaccine presented practical difficulties. The development of a microorganism-
based process to produce virus fragments was thus a welcome innovation.
Today, the yeast Saccharomyces cerevisiae is used to produce hepatitis B vaccine.
The gene (a segment of DNA strand) which controls the production of small HBV fragments
is first inserted into the microorganism. The yeast then produces virus fragments which are
subsequently collected, purified and used as a vaccine. Use of HBV-derived DNA segments
eliminates the whole virus from the production process and reduces the risk of contamination
to zero.
Cite from the article two evidence that support your claim:
EVIDENCE 1: The statement in the article that supports my answer is ...
RUBRICS
Criteria 4 3 2 1 Rating
OUTSTANDING SATISFACTORY DEVELOPING BEGINNING
Content Demonstrates in- Demonstrates Demonstrates Lacks
depth understanding of little understanding
understanding of the topic and understanding of of topic and
topic and employs research topic and employs reports only
accurately utilizes information with research the basic
researched an adequate information with a parts of the
information in the degree of fair degree of information
infographic flyer accuracy accuracy
Written Well-organized Content is Content lacks Unorganized
Presentation content, attractive organized, format organization, content, hard
and well-designed is adequate, format is difficult to follow,
format, clear and message is to follow and not message
easily understood sufficiently organized, and difficult to
Assessment
Directions: Read each question carefully and choose the letter of the correct answer. Write
the chosen letter on a separate sheet of paper.
1. One advantage of genetic engineering in agriculture is ________.
A. clone plants
B. increase yield
C. cure genetic diseases
D. mass production of plants
2. Plasmids are used to _________.
A. join genes together
B. make protein in bacterial cells
C. carry genes into bacterial cells
D. cut genes out of chromosomes
3. What is a genetically modified organism (GMO)?
A. Hybrid organism
B. Plant with certain genes removed
C. An organism with an artificially altered genome
D. Any agricultural organism produced by breeding or biotechnology
4. Restriction fragments of DNA are typically separated from one another by which
process?
A. centrifugation
B. filtering
C. gel electrophoresis
D. PCR
5. Which of the following is an example of a genetically engineered organism?
A. A new plant variety created as a result of mutation
B. A plant that naturally possesses medicinal properties
C. Seedless fruits resulting from spraying the flowers with chemicals
D. A plant that received external DNA to produce natural insecticides
5. D
4. C
3. C
2. C
1. B
What I Know/Posttest
References
Bascos, et al. 2016. Teaching Guide for Senior High School General Biology 2
Clipart.library.com
DNA Learning Center, Cold Spring Harbor Laboratory. 2011. Johann Gregor Mendel (1822-
1884). dnaftb.org/1/bio.html
Hudson Alpha Institute for Biotechnology (nd). Recombinant DNA and Genetic Engineering.
https://hudsonalpha.org/recombinant-dna-and-
geneticengineering/#:~:text=For%20centuries
%2C%20humans%20have%20used,of%20both%20plants%20and%20animals.&text=
This%20process%20has%20historically%20been,DNA%20technology%20or%20gen
etic%20modification.
Labmate Online. 2014. The Pros and Cons of Genetically Modified Organisms (GMOs).
https://www.labmate-online.com/news/news-and-views/5/breaking-news/the-pros-and-
cons-of-genetically-modified-organisms-gmos/31400
Rye, Connie , Robert Wise, Vladimir Jurukovski, Jean DeSaix, Jung Choi, and Yael Avissar.
“Mendel’s Experiments and Heredity.” In Biology. OpenStax: OpenStax, 2016.
https://openstax.org/books/biology/pages/1-introduction.