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9
PHOTOSYNTHESIS
Chapter Outline
WHY IT MATTERS
9.1 PHOTOSYNTHESIS: AN OVERVIEW
Electrons play a primary role in photosynthesis.
Oxygen released by photosynthesis derives from the splitting of water.
In eukaryotes, photosynthesis takes place in chloroplasts.
9.2 THE LIGHT-DEPENDENT REACTIONS OF PHOTOSYNTHESIS
Electrons in pigment molecules absorb light energy in photosynthesis.
Chlorophylls are the main light receptor pigments in photosynthesis.
The photosynthetic pigments are organized into photosystems in chloroplasts.
Electron flow from water to NADP+ leads to the synthesis of NADPH and ATP.
Electron flow can also drive ATP synthesis by flowing cyclically around photosystem I.
Experiments with chloroplasts helped confirm the synthesis of ATP by chemiosmosis.
9.3 THE LIGHT-INDEPENDENT REACTIONS OF PHOTOSYNTHESIS
The Calvin cycle uses NADPH, ATP, and CO2 to generate carbohydrates.
G3P is the starting point for synthesis of many other organic molecules.
Rubisco is the key enzyme of the world’s food economy.
FOCUS ON BASIC RESEARCH: TWO-DIMENSIONAL PAPER CHROMATOGRAPHY AND THE CALVIN
CYCLE
INSIGHTS FORM THE MOLECULAR REVOLUTION: SMALL BUT PUSHY: WHAT IS THE FUNCTION OF
THE SMALL SUBUNIT OF RUBISCO?
9.4 PHOTORESPIRATION AND ALTERNATIVE PROCESSES OF CARBON FIXATION
Photorespiration produces carbon dioxide that is used by the Calvin cycle.
Alternative processes of carbon fixation minimize photorespiration.
9.5 PHOTOSYNTHESIS AND CELLULAR RESPIRATION COMPARED
82 Chapter Nine
Photosynthesis and cellular respiration are similar processes with reactions that essentially are the reverse of
each other.
Evolution of photosynthesis and respiration.
UNANSWERED QUESTIONS
Learning Objectives
After reading the chapter, students should be able to:
Understand the basic properties of light and how sunlight specifically affects pigments in plants.
Define where photosynthesis takes place and the two stages of photosynthesis.
Explain the importance of the proton gradient and why a final electron acceptor is necessary to maintain the gradient.
Analyze the difference between the cyclic and noncyclic reactions of photosynthesis.
Understand the importance of the generation of NADPH and the utilization of ATP in the reactions of photosynthesis.
Know the steps of the light-dependent and light-independent reactions. Know the raw materials (reactants) needed to
start each step, the products made by each step, and where in the plant cell each step occurs.
Explain the difference between cyclic and noncyclic pathways in photosynthesis.
Explain how autotrophs use the intermediates as well as the products of photosynthesis in their own metabolism.
Apply the knowledge of photosynthesis to the impact autotrophs living in the oceans and on land have on global
processes such as carbon cycling. Understand how this activity influences the global climate and discuss the role
humans play in these events.
Explain the role of Rubisco to the world’s food economy.
Key Terms
photosynthesis electromagnetic reaction center Photorespiration
autotrophs spectrum linear electron flow C4 pathway
photoautotrophs chlorophylls photophosphorylation crassulacean acid
heterotrophs carotenoids cyclic electron flow metabolism
Lecture Outline
Why It Matters
A. Plants and algae use light energy to produce organic molecules, like sugar, by a process called
photosynthesis.
B. Englemann’s experiment (Figure 9.1) with photosynthesis of filamentous alga:
1. Violet, blue, and red light colors caused most oxygen to be released.
2. Bacteria clustered around the areas that released most oxygen.
C. Photosynthetic organisms include plants, some protists (algae), some archaeans, and some bacteria.
D. Most photosynthetic organisms use radiant energy of sunlight, convert to chemical energy, and form
complex organic chemicals.
Photosynthesis 83
B. The bodies of plants and animals eventually are a source of organic chemicals for the decomposers.
C. Electrons play a primary role in photosynthesis.
1. In light-dependent reactions, light energy is absorbed and converted into chemical energy: ATP and
NADPH.
2. In light-independent reactions (i.e., Calvin cycle):
a. Energy from ATP and electrons of NADPH are used for CO 2 fixation.
b. Added electrons and protons convert this into a sugar.
3. In plants, algae, and cyanobacteria, the source of electrons and protons for fixing CO 2 is water.
4. When water splits, oxygen is released as a by-product.
5. Photosynthesis primarily produces glucose, but other organic molecules are also assembled directly or
indirectly as products of photosynthesis.
D. Oxygen released by photosynthesis derives from the splitting of water.
1. Samuel Ruben and Martin Kamen of the University of California at Berkeley used a heavy isotope of
oxygen to trace the pathway of oxygen during photosynthesis.
a. Oxygen comes from the splitting of water, not the CO2.
2. The water-splitting reaction probably developed before oxygen-consuming organisms evolved, and led
to a significant change in the early Earth’s atmosphere.
E. In eukaryotes, photosynthesis takes place in chloroplasts.
1. Photosynthesis reactions take place in chloroplasts of plants and algae.
2. Photosynthesis reactions in bacteria are distributed on plasma membrane and cytosol.
3. Chloroplast.
a. Consist of an outer and an inner membrane covering the entire surface of the organelle.
b. Between these is an intermembrane compartment.
c. Fluid in the middle is called the stroma.
d. In the stroma are several flattened sacs called thylakoids with enclosed space, the thylakoid lumen.
e. Stack of thylakoids is called granum (Figure 9.3).
f. The grana are interconnected by tubular membranes called stromal lamellae.
g. The thylakoid membranes and stromal lamellae house the molecules that carry out the light-
dependent reactions, including the light reaction pigments, electron transfer carriers, and ATP
synthase enzymes.
h. Stomata bring CO2 into cells containing chloroplasts.
i. Water and minerals are transported through the roots.
84 Chapter Nine
d. The energy gathered by chlorophylls and carotenoids is relayed to chlorophyll a, which is the
main molecule directly involved in transforming light energy into chemical energy.
D. Photosynthetic pigments are organized into photosystems in chloroplasts (Figure 9.8).
1. Photosystems are embedded into the thylakoids.
2. Photosystems I and II collect different parts of the light reactions.
a. Each photosystem has an antenna, or light-harvesting complex.
b. It also has a reaction center where chemical energy is produced.
c. Photosystem I is called P700 due to the wavelength it absorbs.
d. Photosystem II is called P680 for the same reason.
E. Electron flow from water to NADP+ leads to the synthesis of NADPH and ATP.
1. Electrons are produced by the splitting of water: two per molecule of water.
2. Electrons are sent through a chain of electron carriers in photosystem II.
3. Then they are passed to photosystem I.
4. Energy from this transfer is used to create a proton gradient.
5. The proton gradient supplies energy to make ATP (Figure 9.10).
6. Then they pass through photosystem I and make NADPH.
7. NADPH supplies energy for CO2 fixation (Figure 9.10).
8. This is called linear electron flow.
Photosynthesis 85
F. Electrons can also drive ATP synthesis by flowing cyclically around photosystem I (Figure 9.11).
1. Electrons flow through the cytochrome complex to P700 of photosystem I, excited by light energy,
then back to the cytochrome complex.
2. Electrons are not used for NADPH production.
3. Each cycle pumps one more proton pair across the membrane.
4. It is hypothesized that this pathway may be a physiological response to stress conditions, as ATP is
made but not NADPH. This limits reducing power and the consequent formation of reactive oxygen
species.
G. Experiments with chloroplasts confirm synthesis of ATP by chemiosmosis.
1. Jagendorf and Uribe placed chloroplasts in darkness first, then in acidic medium, and then into a basic
medium (Figure 9.10).
2. The change in proton gradient resulted in synthesis of ATP.
Focus on Basic Research: Two-Dimensional Paper Chromatography and the Calvin Cycle
A. Melvin Calvin and Andrew Benson of the University of California at Berkeley used radioactive carbon
dioxide to study dark reactions in green algae, Chlorella.
B. After exposing the cells to radioactive carbon dioxide for various amounts of time, they:
1. Stopped photosynthesis by placing the cells in alcohol.
2. Extracted the chemicals.
3. Put chemical samples on chromatography paper and ran them in two dimensions.
4. Put together chemicals in sequence to construct the Calvin cycle.
Insights from the Molecular Revolution: Small But Pushy: What Is the Function of the Small Subunit of Rubisco?
A. Rubisco has 16 subunits, eight large and eight small subunits.
B. The active site on rubisco is on the large polypeptide subunit.
C. If the small subunit is removed, it loses 99% of its function, but all the active sites seem to be on the large
subunits.
D. Betsy Reed and Robert Tabita of the Ohio State University—What is the function of small subunits?
E. Rubisco’s eight copies of each subunit all do the same thing—catalyze the same reaction.
F. The small subunits have a significant effect on rubisco’s rate of catalysis.
86 Chapter Nine
4.During a hot day, O2 binds to rubisco, inhibits the enzyme, and reduces photosynthesis.
5.The upper surface of the leaves is covered by a cuticle that prevents water loss but also prevents rapid
diffusion of gases.
6. Most gas exchange occurs through stomata located on the under surface of the leaves.
7. Plants that are adapted or not adapted to hot, dry climates are faced with a constant dilemma: They
need to keep their stomata open for CO2 to diffuse, but closed to prevent water loss.
8. When stomata are closed, CO2 in the leaf is consumed and oxygen accumulates.
C. Alternate processes of carbon fixation minimize photorespiration.
1. Many plants that live in hot, dry environments have evolved alternate processes of carbon fixation that
minimize photorespiration, and therefore its negative effect on photosynthesis.
2. C4 plants and the C4 pathway.
a. C4 plants include corn, sugarcane, crabgrass, and many other members of almost 19 families of
flowering plants.
b. C4 plants have a characteristic leaf anatomy: photosynthetic mesophyll cells are tightly associated
with chloroplast-rich bundle sheath cells (bundle sheath cells are not photosynthetic in C3 plants)
(Figures 9.14a and 9.14b).
c. In C4 pathway, CO2 initially is fixed in the form of oxaloacetate by combining CO2 with PEP.
d. PEP is converted to malate and then pyruvate.
e. Pyruvate is oxidized to release CO2, which then is used by the Calvin cycle (Figure 9.15a).
f. Photorespiration is extremely low or negligible in C4 plants.
g. Why are all plants not C4? Because C4 plants have an additional requirement of ATP for each turn
of the C4 cycle.
3. CAM plants and the CAM pathway.
a. Just like C4 plants, CAM plants fix CO2 as oxaloacetate.
b. In CAM plants, carbon fixing and Calvin cycle both take place in mesophyll cells and at different
times of the day and night (Figure 9.15b).
c. CAM pathway takes place in cacti and orchids.
Unanswered Questions
A. Why is photosynthesis so inefficient, and what can we do about it?
1. Photosynthesis involves the highest energy processes of life.
2. The intermediates of photosynthesis are very reactive, to the point that much of the absorbed energy
must be dumped by plants.
3. A typical agricultural crop may store only about 0.1% to 0.5% of the absorbed energy into its biomass.
4. Some plants can store up to 10 times more energy.
B. How is the efficiency of photosynthesis regulated?
1. David Kramer of Washington State University is researching the energetics and regulation of
photosynthesis.
2. His laboratory has determined that production of heat helps to balance the production of damaging
components during photosynthesis.
3. ATP synthase acts as a major regulator of photosynthesis.
Photosynthesis 87
Suggestions for Presenting the Material
One of the common student misconceptions that occurs regarding the cellular processes that generate ATP is that
plants do not undergo cellular respiration. Make sure that somewhere in the discussion of this chapter students are
reminded that Chapter 8 has relevance to photosynthetic organisms and that they also perform cellular respiration. Many
students also do not understand that for the Calvin cycle there are “three turns” of the wheel.
Another common misconception is what the term carbon fixation really means. Do your best to help students realize
that when carbon is fixed, that means it is turned into new tissues in the organism. This is why many scientists are
concerned with plant growth for fixing carbon from the atmosphere.
Many students have problems with considering the same enzyme rubisco as an oxygenase and a carboxylase.
Explaining to students how different reactions can be sequestered based on their location in the cell should help with this
difficulty.
Review oxidation-reduction reactions again. After Chapter 8, these reactions should be very fresh in the students’
memory. Repetition of concepts like this can be helpful for many students in learning the reactions presented in
Chapter 9.
A discussion of the reason colored objects appear the color they do may facilitate the students’ understanding of why,
for example, green light is ineffective for photosynthesis (not absorbed).
Photosynthesis is much more complicated than the usual simple equation that a student may have seen in a previous
course. Perhaps the best approach to presenting this topic is to follow a stepwise outline and rely heavily on
transparencies and slides of the figures in the chapter. Giving handouts on which students have to fill in the products
from each step may help to reinforce learning the pathways.
Refer to the old terminology of the light-dependent and light-independent reactions and why these are inaccurate.
Explain to students the difference in the amount of ATP that can be generated from cyclic versus noncyclic pathways
in photosynthesis.
Emphasize that plants do carry on aerobic respiration. Many students have the mistaken idea that plants only
photosynthesize.
Stress to students the importance of knowing the processes rather than memorizing all the various reactions. Tell
students it is important to know what starts each step of the cycle and what the outcome of each cycle will be in order to
understand photosynthesis. For example: G3P is emphasized in the text as the starting point for the synthesis of many
other organic molecules.
Talk about plants that are adapted to different types of habitats. Explain why there are C 3, C4, and CAM designations
for these plants. This will help students understand that there is not a single photosynthetic pathway, but even though
they all begin the same, there are differences that maximize efficiency in different habitats.
Emphasize NADPH and ATP as carrier molecules. This reinforces Chapter 8 and shows the similarity of energy-
producing pathways across phyla.
88 Chapter Nine
Follow up your discussion of C3, C4, and CAM plants by showing the animation comparing C4 and CAM plants. For
visual learners, this can be a powerful tool.
Have students “follow the carbon” through the Calvin cycle. This will help students understand the number of turns
necessary to produce one net G3P molecule. In addition, it will help them learn each step of the cycle if that is something
that will be emphasized in the classroom.
Classroom Discussion
Why It Matters
This section in the chapter highlights the discovery of the spectrum and organisms that perform photosynthesis. You can
use the BBC videos from the environmental science DVDs to give a global theme to the chapter as well. These can add a
poignant touch to the material covered and may result in a discussion about the importance of carbon fixation, rising
carbon levels in the atmosphere, and conservation. All of these topics can be touched on again during the conservation
chapters.
Focus on Research
Ask students to recall what they learned from the chemistry review in earlier chapters. Have them discuss why a method
like 2D paper chromatography was a useful method for Calvin and Benson.
Unanswered Questions
Ask the students to discuss why plants have to regulate their rate of photosynthesis, and why they have to dissipate most
of their energy.
Photosynthesis 89
d. Result: The splint burns brightly in the high-oxygen air.
Separate the pigments in green leaves by using paper chromatography. (Consult a botany or biology laboratory manual
for the correct procedure.)
Show an electron micrograph of a chloroplast and indicate where light-dependent reactions and light-independent
reactions occur.
Cut out separated leaf pigments from a paper chromatogram and elute each pigment from the paper with a small
amount of alcohol. Using a spectrometer, determine the absorption spectrum for each pigment and graph the results.
(Consult a biology or botany laboratory manual for the procedure.)
Suggested Readings
Other Readings
The following is a website that students may enjoy visiting to learn more about the topics covered in Chapter 9.
http://www.cwnp.org/adaptations.html
90 Chapter Nine
Possible Responses to Think Outside the Book
The following website has a nice overview of research being done on harvesting energy from artificial photosynthesis:
http://www.scientificamerican.com/blog/post.cfm?id=shift-happens-will-artificial-photo-2010-03-03. You could direct
students to this site first so they can better refine their search. Their synopses of the research will likely include a
discussion on the splitting of water, how the sun’s energy can be used for splitting water, and some mechanisms for
harnessing the energy released when the chemical bonds of water are broken.
Photosynthesis 91