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CuoninG - makng coi

hnay-globin gene PCR


onpiby t g
human DNA
daubt nded (g
ruichn
Polyn Caain Reastn (PUR)
enaymes g i
Karny Huli (ar)
YesicHon
-camplu fhs DA Squen
enagars
tart

pamids dobbe shwkd pN


. eraBe 2 stnds (hru denaturing mcltn)
bonds hol ds te shand
transfarm t. nydregtn C90-94'C)

DNA uranon o on )
platu
. genowi e libur (oh squ enws)
3. CDNA ibrutxns Annealing (s0-9c)
4uwbon- are
N No. Df clors prim
probability e certhin C.I 4that a
In (1-4) (equent i« rtaMstn kd at lat a partHud a

n in thu ibrars art


cingaton
6enmSi*
Elraota (10 )
9hoe 3 xI bau poir)

2 DNA
a. 4/. C
gbein
g

Constructing CDNA
isolal kNA COMA
#{nylon pap attndh
cON liprafy cangtuho Tran ded needs
Singte DNA gat
hahure nRNA txtacHoh uheoti de stauentt
-

9tt the nglon Pri prims M a t (tuble


3. ConstruHon df CDNA
PCR twe naymt LONA polymrast)
prmtdw RNAge H Taq polymete
mature mRNA
(Wdaskmplek h i
tmale shuadu n*
4Thermuu aquatas
4hemel taplers Acleoides
&ONA

4prim+ ONA polymurast


tDUA

rshchsn digektioh, ranshrmad h, uulhe


Hursphortis on in a T AE ufkr
T7. ag artw
e t al'n mt plk)
wi wt

wid fype
one as
H agaw al)
19D b (put
I00V
op (2D mins

bom giros qe
Mas
The Fight Againgt r p i aak odn
covip-19 PCRDNNA
2014 n vinus (pande mic) -PtRMautaa
New Ag+
CARc Thetádemi
Six ytats beht 4hewine fflu Pandit -ARS
nnt Pndjc- polymernte
ab
CoViD4
o respivnh ny ideess Cud by cnbavira(SARS-CV-2) 4W CoTDnAviph
nevl (new) vins = COV

irst diçunutd In Wuhn, CinM (Nov 2oa 1 Edward Jennr CEnglnna)


-Saf»a tet in wulin
mal
bat- pgrun -huanns - atthaf has Chw pex - i tinnan mdl P*
Ciatumedphe ht) trunsk h ks Mups
- sok fid f a (arad udnu
Vit usts
hs uving
sMewniun steplu inkthiou agant a r p l
Cel in
Cw smll p -bo{R lodng
orthop X vimg
t liy rgi
Dengs, HN, mallpox, Mflutngs mpo t y ndi
o viny wt infuhos okmMa
8p of Vauisa n ) iuhhn
thde Mo-14 isk
rt kod i f
Covemavirys pk ptin d h bodi u
t Culs nly ik prun
cell will be tonnuhd h qiu p»hun
Siwnra
inkuuhi hpp in rspiahry t t
hrDNA /RA Virs
for2
AT Aldi)

Cortaviu ewtptiza
1 fHunan
Alpha .
Brn Upak
HCoy-NL3 ucahiag - DNA
tov22E - A a n in thhc code
Ptlta Jbrirn HCov-Oc43 -

in seik p
pho i Lon

SAR COV-I, MERS, Skest av-2


SARS-Cov-2
C Cad
CovlD yan
Deltav iSprud)
hunta p b
Vin Cova yaein ? YEs.
-dd wt stt Coron.aviru
- r g LartARIM
dLuland CANID-1 pndtmc wt
March lL, A
-phg Capideni C Pandv nttic Ww wurlduiidt &llado rnhi v fht
Bsk b u - Yuxinic peshc (tg) Genoc stawan an wa hundd- 6ld
Test r ov wort advane R btort.
Holtar Tshy -, imne r4pose h tarti« infuHm Yacanes Cut Cututim .
detut
lood (anpe (at -4 wth h dudno dndy) Covip de lkbaat wwdt in the l
- Antign deku kin
R-POR dehuh
hly merase
wmOr tuahlt
Choi'n Reaukon
he Fight Againgt CoVID-19 DATE
PCR DNA Npi ak*n
Dl4 vin (pmdemic)
Nea Ag
ARSoThetidiu
ARS Po
CoVID14
bspiah ikgs Atd by
b nal (mw) vins
oktvovirusSARS-CV-2) W4s CorRAviphn
COV
Rgbry ot Yum
In wuhan, Cina (Ny 201a
-Seafrd t t in wuhn
4 Edward kmu (Engtand)
baf pngrin hunans ma
Cintumehiak hst)
- po fid fon arrd wdns yrunskr b s lups
Viruses expntnd f y )
sMbmicniept inkh u agant Caw smll py-bo4R bdg in
a t iin4 brgugn orthope X ving

bong HIN , mallpok, influunga m p pby tndi otd

CovD-14 inkt
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Cormavins k prtri
cell wil e
Siwna
inkuri yps in
rpirabny tnet
DNA RN vis

Ars alnA) VAi ww*


rahn t uw ddortd
Uewpstiaad
hunan
ipha Upas RCoy -NL43 - DNA
Peha
ttov23E 4thehc ode
CoV-OCt13
-cnain
Polta Jird - in ik
p h o mi Loa
SARS-CoY-2 k s > »lt G|
SARs COV-1 MER Skes Cov-2
C Pan n CoviD 1a varit,
Delta ASu
bts
Vin unt tap Ca vain YEs.
-Nd at t t f snttk Coronavinu ist chn
Morth l , duland Cvlg-t4Pndm
tnoktic) uworlduidt labo rahi vr ffrt
ph EPidemit Pandvm
Geynoc dtayam An wa hundmd- sla

Test for oVP


advmex bort.
Xacans CutCut outiym
Motwr Teshy dekut Ihme apos h
Cali« ituim
not
CovID delihaatly mdt in the la.
ood Canpe ( tat -4 we k dudap dahd)
det bnkin
Antiq
- PCR duehu
Polymerase moy rtialyl
Chai'n Readkio n
How does COVID-19 infect?

SARS-CoV-2
Spike
TMPRS$2 SARS-CoV-2
s
Spike
Furin protein

Healthy
ACE2 air sac (alveoli)

$1/$2 subunits cleavage by furin and


SARS-CoV-2 genomes penetrate into
the host cell

TMPRSS2 Furin
ACE2

Host cell

TCL
19 infect?
Healthy airspace
with airflow

Alrways swelling
and decreaslng
airflow
Healthy
air sac (alveoli) Inflammation
in alveolar walls

Alr space filled


with flulds
There are 7 human coronaviruses
Coronavirus
ancestor

C
Group A, B, C, D
Belacoronavirus Gammacoronavirus Deltacoronavia
Jenus Alphacoronavirus
HCoV-NL63, HCoV-OC43,
HCoV-229E HCoV-HKU1,
SARS,
MERS,
Wu et al., 2012. 0O: 10.1128/M.0CSS
CoV-2
Primary
host

Coronavirus
Cross-species Bat
ransmssion/
2002 230 years ag0 2019
Secondary/
host

Civotcat Camel Pangolin


SARS-CoV MERS-CoV SARS-CoV-2
(Year2003) (Year2012)
(Year2019)
Diet or close Close contacd with
contact mucus or fuids (SUl Unknown)

Human
Tertiary Coronavinus

host

Human
SARS-CoV-1, MERS, and SARS-
CoV-2 likely all emerged from
bats and were transferred to
humans via intermediate hosts

More than 500 coronaviruses have


been identified in bats in China, with
estimates of unknown bat coronavirus
diversity reaching>5000

A civit cat
Why has COV-2 been
control than SARS? so much harder to
Cov-1/SARS
Spillover reservoir known: civit cats cov-2/covID-19
Most transmission
occurred in Spillover reservoir unknown
hospital setting Widespread community transmission
(hubs)
No transmission until 24-36 h after
Lack of asymptomatic symptoms Abundant asymptomatic/mild cases
symptoms
Pandemic Endemic
Epidemic Consistently present in
Spreads rapidly across
Spreads rapidly within a the population, with
finite geographical area several countries,
relatively low spread
continents, or the world

ooo0000o

o00000
000OO00
OOOO0
0000 00
56M
Small Pox
1520 40-50M
Spanish Flu 30-50M
1918-1919 Plague of Justinlan
541-542

200 M
Bubonic Plague
1347-1361

25-35M 12M M
HIV/AIDS The Third Plague 3M 1.1M IM
1981- PRESENT 5
Antonine 17th Centuy Aslan Flu
1M M
Plague Russlan Flu Hong Kong Flu
Great Plagues 57-1958 1889-1890
Cholera 6
165.1 1665 1968-197 outbreak
1817-1923
1M 600K 200K 4.7K
100-15 11.3K Novel Coronavirus 850
Japanese 18th Century Swine Flu Yellow Fever Ebola
(CoviD-19) MERS
770
SARS
mallpox Epldemic Great Plagues 2009-2010 LATE 1800s 2014-2016 2019 PRESENT 2015.PRESENT 2002.200
735-737
1817-1923
FOURWAYS TO DESTROY CORONAVIRUS
1 SOAPAND WATER BLEACH SOLUTION

HANDS ARD SsuRTACES MANDS MARD Sa ACES


saAPHOLECULES NaCtO

sOONM MYPOCHLOBTE
Dot ma ble xh mithotter cleaners
Dissotres ta fato
Dasetres i wta This tan generate taae chlorine gas

WASH HANDS FORA MINIMUM OF 20 SECONDS MINIMUM CONCENTRATiON OF 0.1 HYPOCHLORTE

HOW OOES T DESTROY THE VIRUS? MOWDOES IT DESTROY THE vurus?


Soap molecules dissolve the fatty outside Layer of the virus. Ary Bte ach cxidses and destroys vrus prote ens and genetc
materal It should be lelt on surtaces for at le ast 10 mrutes
type of soap is elfective, soit doe sn'tmatter what type you use

THEANATOMYOF THE VIRUS 2) ALCOHOLHAND SANITISER HYDROGEN PEROXIDE

Coronaviruses are a group of viruses The specific coronavirus HANDS ARD suRFACES MANDS MARD SUus ACES
that causes CcoVID-19 is calted SARS-CoV-2
H,0
OH OH
oEOCKPRaroE
-Ewelepe
Nacteocapsld (fatty Layer )
Oon1 mis peraide thyinegar
(made of prota in) ETHANOL 150PROPANO This mahrs corrovve per xetk Kd
Evnlope protain
Viral ga nom
MINIMUM CONCENTRATION OF O.S% PEROXIDE
(genatk materta)
-spia protei MIN.60%ALCOHOL (HANDS) OR70% (SURFACES)
NOW DOES T CESTROY TE vIRUST
HOW DOES T DESTROYTHE VIRUS?

Peraaide crdses and de stroys vrus prote ns and genetc


SARS-CoV-2 is a new virus, so there's currently no treatment
Alcoholmolecules dissolve the faty out side layer of the virus
for it. Dy cle aning hands and surfaces we can stop il spreading and damage the structures of virus proteins matenial t should be lelt on surtaces for at le ast 10 mnutes
THEANATOMYOF
Coronaviruses are a
THE VIRUS 2
that causes group viruses The specific
of
CovID-19 is called coronavirus
SARS-CoV-2

ucleocapsld
nade of proteln)
Envelope
(fatty layer)
al genome
netic materlal) -Emvelope protein
Spleproteln MIN. 60%
ARS-CoV-2 is a new
virus, so there's
tBy cleaning hands currently no
and surfaces we can stop it treatment Alcohol mole=
spreading and d

Andy Brunning/Compound
Interest
This graphic is shared
under a 2020-www.Attribution-NonCom
Creative Commons compoundchem.com
History of
Vaccination
Pioneered in 1796 by Edward Jenner in
England
TYPES OF VACCINES

Whole inactivated
(nectlvated vins)
UU

M
Synthetic peptide
(Laboratory-made
plece of prolein)

Recombinant viral vector Recombinant bacterlal Virus-like particles


vector (Samo shopo 0s virus, insides changed)
(Another virus carrles
pleces of tho toroeted (Bacteria used to carry
virus) pleces ol irus)
Mutations
Spike protein
The part of the
virus that enters
the human cll
COVID-19 Variants
VOI VOI (HvoI 0voI VOC
(HVoI

Omcron
Epsllon Lambda CineageMu
B.1.621) (lneage B.1.1.529)
(lineages Kappa
(6ublineage
lota
B.1.617.1)(ineageB.1.526) (ineegeC.37
B.1.427/B.1.429)
Was the development of COVID vaccine
rushed?

We did not start from scratch.

Researchers were quick.

It was a worldwide collaborative effort.

hundred-fold more advanced than before.


Genomic sequencing was
f R Khe tHind 3
PTUm NO
DATE
eOTT NS AND SYNTHESI
nonsenst codow
up codOI.
=

The gthethu ode Contuins


6190n9 F dn ile ale. (rihoome) preven anslano
hera pevho satay th prvet aUlandn UA6 Camber)

rROTIN TRVVRE 2. UGH opPal)

2 amind aid hehen 3. VA Cooro)


mole wle oF NU bein omed
EPDE UNO Anothey ey_Mayer i the faUja tiinpncf
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tnme That ena le

bSeunoaRy A helix plead uheet tran fer RNA s aminoam KNA ynthetece
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ca vrV o or intyact t the mRNA
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bind

Wobble-4ouw on tRNA r eogalbe tw0 o dons


)BvaRTt naRy hemo gnvy ( UbUn.f
hird p0sthon in the anhaodo (no t shid)
for eveny ehu there
LotineaRIT of G t ailo PROE IN
wonge RVLEY
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amino aads Cor


Chabk i dena what
The oeehi o bde
v aded in Fuly refhe chui only
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PRORERTPOF THE EnTIO
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Non-0Vorlapping
No
2.
TRPLFad (ketkrs) uv
RNA Anh0don odon
AC6+ u0bble UCO V
GEnTi Co DES 4RNA1
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oveLaPPin VCA
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OVERLAPPnG

GeNA Ser UCGt uwbMe


AVO

S
NDA OVr KoPR CP6
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taor mo0ni ne a t wilengble thansah/on bpokik ynTe Jiu
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it ill reuy "y 1
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d IF d dbn 0 ribsbrha
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4X x 4 unIT
Conuinwee, letRit
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a den 23S rRNA
vghFoy 20 amind atids
omind a0dJ moe hon eha 5 RNA
31 mi prtetiy 9apvwins 33 pokie
rNH Felis p b y i d mtleonlar st Uuing CoR estnction endonvetede elyme olaed

s wtt RnN bu dvdiAq cenr key ate T feuest


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inkiution d

in t e
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rJHinE DeL GARJ RapF eodey the inha thon Con, tCO R (eco R fve Vsed CU open
he ingkeri q pu the art cdon vectbr *d 0 a gene ot in eres
o ploumid

(vecog e 6AT ATt skr


lae chane Aami aud dun ng 9 tne cloy id
taalanar 10nanon in
piokoietrd f Tsift
Teqvires ovine Jerm
nitnohd FO udiv
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deo
xynbo nv cleost reutnChon enayme
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deove ONA dindromiu equente 6 C 77

fnet in the pf0JPnr o Hhe cofator gvid


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AAved
MRTA
Mothionine w)hydislyav. Cprdu ay fuky ends

S' AA GCTT . 8
0Tihahtot ompA

3 11 CG A S
STFV n TKans LdTndn orlofmion

amineacytRNa Y ephdc
Enyme 1arget Seqvence Clecav 04e
ondetmN
Trans louhon E-6 5'GAATTCS AATTC
aina.acu tKlnd
rAnleganbi ta RV
3CrTARG G'_
'6ATHC 3'
3 CT THGS
'1TTC
s'GATA

nianon of anLanon
no tRna that peunes the op Codon
Lpnkalyolcg)
RF 1 Seupi FOr UAf and

F UAP and V6V

RF2 umle pnes


orelease Fachw
RF ( e S in the at) f Ma War mole ae ha

polypephAC chain dtylaced CHydnlyte run)


-

Suppesr Covntratks the Ptes


Fa non enge muwhun:
a)Pmber mTA) on ibovJ UAG r codon. TransatnU n

b Tunsine tRNa antwdon is changed t VAC


AG coden. Transarton continves.
tunsine tRnA rudi
NO.

DATE

M.longoatmbn new teNA CAing agud s he htt


imahivU plidnd pmdrtes related at difine pkt isoFor
ahi o don oe the incoming tkNA U matdh
on the ribb)ome, fhe
Phopharylahán ond Dephosphrylo-'an pheins a Quint he mRNA cudon poutho ned i The s t e ounny fhs
elTyme) Stgnal in
Inochive bn>yme
hs assit
npha p l r KOSo pp rea di tRA w n orrtu anha dons avt rytut ed
PITP Phosphotowe remoVal in

Pop phas phuvylnhon ngnT qmi nvou- tRNB endu


Yelatd. Then hth ne
oy adding changuthe
whtle_conor thaion
PUHVU Sene a sT VEVrble

bnnoaaaal ou JWitdh, m enmaho


hcontN celular mage r uund,
otein Toldind adyauA anana achda M rtphde bord
Induding_pnkin-p/oton1

Mpnteininla ations in or0anism conlyole Tne


A site
INTEKdabME
NA in t b usra4 ph e
A u peph dyl
UDI(N ni>aion -tuiactu pntcin fn deaAAfo
ono vbiqvitin chaln
2& pttasome

nal eNPACeS agts pn teln Pr eehda TtkminoTlo happers wheA


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TheLinnih.somal Undt i uparat Apm th lon Jbvni
wh me hely a tw inihohan aths F1 and IP 1N howaver hase coAs re wg nied by a rtleak Fah
cempes then bindy a
punne -ioh vegion he Shine -0al qarno Bin Alng o he velense pastr CAtaly as he dheaNJe o

Senvenepsreum th AUG tart codon on the m RN bundbehwcen he o reyehde and ten


The Jhine- Dalgarmo 6eq sencef basgp ed h a aln p himetw th pphde releujed om th ihesome fhe
seqvene on ne 1bv rRMpA omponert the Jnall Gubo n r oSeme 1 d3 9pa atd ih ubwnitt ad rady er

hat he otart odon the


This dlrgnmert nstres in vet aheu ngVnd urslahon

poShn wihin the ibojome IF2bhng in the nitiator

4Rne chrqed wh he inidt amin aad NPmylmelh

ht lawge igojom subont oins the umplex dll i0i alyan


Ycleajed. Rimsome aus
far art

A9t thy Fi neul RNH


one T a iy gnr
tkNA *
0 Capde by pept1 dyl- Poruhdechain
tit Ade

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