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:Pseudomonas putida PT
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Sanaz Khashei
Biology Department, Faculty of Sciences, University of Isfahan, Iran, sanazkhashei70@gmail.com
Zahra Etemadifar *
Biology Department, Faculty of Sciences, University of Isfahan, Iran, z.etemadifar@sci.ui.ac.ir
Hamid Reza Rahmani
Educating and Extension Organization, AREEO, Isfahan, Iran, rahmani.hrhr@gmail.com
Abstract
Introduction: Pollution of agricultural soils with heavy metals is a serious problem in the
world. The aim of this study was to produce a multipurpose biofertilizer which can remove
cadmium from polluted soils as well as enhancing plant growth.
Materials and methods: To study the ability of Pseudomonas putida strain PT for
establishing an effective relationship with plants, the effects of some compounds present in
plant root exudates were examined on chemotaxis, growth, and biofilm formation of bacteria.
Pot experiments were performed by using biofertilizers prepared from P. putida PT by two
different methods including seed immersion and immobilization of the bacterial cells on rice
bran as carrier. After measuring the fresh weight and dry weight of each plant, cadmium
concentrations in plant aerial tissues and soil in the presence and absence of biofertilizers
was measured by atomic absorption spectrometry.
Results: Results showed positive chemotactic responses of P. putida PT to sucrose,
mannitol, glucose, alanine, histidine, tryptophan, succinic acid, malic acid, and citric acid.
Succinic acid, mannitol, and sucrose promoted both biofilm formation and growth of P.
putida PT. Malic acid enhanced only the bacterial growth, whereas histidine, tryptophan and
glucose promoted biofilm formation. Both biofertilizers enhanced the fresh and dry weight of
maize plants about 2-fold. The maximum reduction of cadmium concentration in the soil was
observed in the presence of immobilized cells (97.57%), followed by the inoculation of
bacterial cells by seed immersion method (68.67%). Cadmium concentration in plants was
decreased from 6310 ppb in control experiment to 885 ppb and 2917.5 ppb in the presence of
biofertilizers produced by cell immobilization and seed immersion techniques, respectively.
Discussion and conclusion: Using these fertilizers is an approach to promote maize growth
in cadmium contaminated soils along with decreasing metal concentrations in soil and plant.
Key words: Biofertilizer, Bioremediation, Biofilm, Cadmium, Cell Immobilization,
Chemotaxis, Plant Growth Promoting, Seed Immersion.
*Corresponding Author
Copyright © 2020, University of Isfahan. This is an Open Access article distributed under the terms of the Creative
Commons Attribution License (http://creativecommons.org/licenses/BY-NC-ND/4.0/), which permits others to
download this work and share it with others as long as they credit it, but they cannot change it in any way or use it
commercially.
118 Biological Journal of Microorganism, 8th Year, Vol. 8, No. 32, Winter 2020
Biofertilizer Preparation: Biofertilizers from the pots carefully and were rinsed
were prepared in two different types of with distilled water. After measuring the
formulation: bacterial inoculation using the fresh weight, dry weight of each plant was
seed immersion method and immobilization determined after drying at 70 ˚C for 48h.
on rice bran. P. putida PT was cultured in The cadmium concentration in Z. mays
conical flasks containing 50 ml Tryptic Soy aerial tissues was determined using Atomic
Broth (TSB) medium at 30°C on an orbital Absorption Spectrometry (AAS). All
shaker at 120 rpm until reaching experiments were performed triplicates.
exponential growth phase. The bacterial Statistical Analysis: One-factor analysis
suspension was adjusted to the approximate of variance (ANOVA) followed by
concentration of 2.5˟109 CFU/ml. Scheffe’s post hoc analysis were performed
In seed immersion method, maize (Z. to assess the difference between different
mays) seeds provided by the Soil and Water treatments. Level of significance unless
Research Institute of Isfahan were specified is P < 0.05.
transferred to the bacterial suspension (1
seed per 1 ml of bacterial inoculants) and Results
allowed to incubate for 30 min at room Chemotaxis P. putida PT
Assay:
temperature. To prepare immobilized cells migration from the inoculation point to
on rice bran, the bacterial suspension was organic compounds added to swim plates
added to the sterilized rice bran (1 ml of exhibited positive chemotactic responses of
bacterial suspension per 1 gram of rice this bacterium to all amino acids, sugars
bran) and incubated at room temperature and organic acids tested in this study. No
for 5 days (33). chemotactic response was detected in the
Pot Experiments: Pot experiments for negative control plate which was contained
studying the effect of the biofertilizers on one drop of sterile distilled water instead of
the plant growth and heavy metal uptake in organic compounds (Figure 1).
Z. mays were conducted in greenhouse Evaluation of P. Putida PT Growth: To
condition. Physicochemical properties of evaluate the influence of plant root
the soil used in the experiments were as exudates on P. putida PT growth, different
follows: 55% sand; 18.4% silt; 24% clay; amino acids, sugars and organic acids at
cation exchange capacity (CEC) of 7.5 various concentrations were added to the
cmol/kg; 10000 mg/kg Fe; 330 mg/kg Mn; microorganism culture medium. Citric acid
83 mg/kg Zn; 25 mg/kg Cu and 30 mg/kg at concentrations from 25 and 50 µM did
Pb. Soil samples were dried at room not produce a significant effect on the
temperature and passed through a sieve microorganism growth. Malic acid at
with a diameter of 2 mm. The metal salt concentrations from 50 to 100 µM and
was dissolved in distilled water and mixed succinic acid at the concentration of 100
thoroughly with the soil (~ 40000 ppb Cd in µM significantly decreased P. putida PT
each kg of soil). The experiment involved growth. Succinic acid at concentrations
three separate treatments with three from 25 to 100 µM and malic acid at the
replications: (I) plants growing in the concentration of 25 µM significantly
inoculated soil with the immobilized enhanced the growth compared to control
bacterial cells on rice bran; (II) inoculated (Fig. 2a). Alanine, tryptophan, and histidine
plants by seed immersion method (III) revealed no significant effects on growth
control treatment (plants growing in soil in (Fig. 2b). Also, the results indicated that P.
the absence of bacterial cells). After 70 putida PT growth is independent regarding
days of incubation, plants were removed the variation in the concentration of
Multifunctional Biofertilizer from Pseudomonas Putida PT: A Potential Approach for Simultaneous Improving …/ Zahra Etemadifar et al. 121
Fig. 1- P. putida PT chemotactic response to (a) tryptophan, (b) alanine, (c) histidine, (d) malic acid, (e) citric
acid, (f) succinic acid, (g) mannitol, (h) glucose and (i) sucrose in qualitative swim plate assays. A positive
chemotactic response is indicated by the formation of a swimming ring toward the chemoattractant (arrows
represent P. putida PT movement in the direction of the chemoattractants). No response was detected when only a
drop of sterile distilled water was added (plate (j) as negative control).
122 Biological Journal of Microorganism, 8th Year, Vol. 8, No. 32, Winter 2020
0/8 d
nm)
0/6 c
0/4
c c
0/2
0
Citric acid Malic acid Succinc acid
a
1 a a
a a a a a
0/8
nm)
0/6
0/4
0/2
0
Alanine Tryptophan Histidine
1/2 b
b
a b b
1 a a
a a a
0/8 c c
nm)
0/6
0/4
0/2
0
Glucose Manitole Sucrose
Fig. 2- Effects of different types and concentrations of (a) organic acids, (b) amino acids and (c) sugars which are
present in root exudates on P. putida PT growth. Each value is the mean of triplicates. Bars represent standard
error. Data of columns indexed by the same letter are not significantly different (P < 0.05) according to the
Scheffe test (p < 0.05).
2 a a
a a a a a a
a a
1/6 a
1/2
0/8
0/4
0
Citric acid Malic acid Succinic acid
a a a a
a
1/6
1/2
0/8
0/4
0
Alanine Tryptophan Histidine
2 a
a a a a
a
1/6
1/2
0/8
0/4
0
Glucose Manitole Sucrose
Fig. 3- Effects of different types and concentrations of (a) organic acids, (b) amino acids and (c) sugars which are
present in root exudates on biofilm formation in P. putida PT. Each value is the mean of triplicates. Bars represent
standard error. Data of columns indexed by the same letter are not significantly different according to the Scheffe
test (p < 0.05).
124 Biological Journal of Microorganism, 8th Year, Vol. 8, No. 32, Winter 2020
15
a
Fig. 5- Cadmium concentration in the aerial tissues
10
of Z. mays grown in the (A) absence of bacterial
cells, (B) presence of bacterial cells by seed
5 immersion method and (C) presence of
b´ b´
a´ immobilized bacterial cells on rice bran. Each
0 value is the mean of triplicates. Error bars
A B C represent SD. Statistical differences between
Fig. 4- Fresh and dry weight of Z. mays (A) means are indicated by different letters according
without inoculation, (B) inoculation with the to the Scheffe test (p < 0.05).
immobilized bacterial cells on rice bran and (C)
inoculation with bacterial cells by seed immersion Effects of Biofertilizers on Soil Cadmium
method. Each value is the mean of triplicates. Bars Content: The inoculation of soil with the
represent standard error. Data of columns indexed
by the same letter are not significantly different
biofertilizers resulted in a significant
according to the Scheffe test (p < 0.05). decrease in the soil cadmium concentration
compared to the control plants since 49.5%
Effects of the Biofertilizers on Cadmium of soil cadmium concentration decreased
Accumulation in Z. mays: At the end of the in the control treatments. Inoculation of
experiment, cadmium concentration in the bacterial cells by seed immersion method
aerial parts of Z. mays in the presence and further augmented the cadmium decrease
absence of biofertilizers was measured by to 68.67%. The maximum decrease in soil
AAS. The maximum accumulation of cadmium concentration was observed in
cadmium (6310 ppb) was observed in the presence of immobilized bacterial cells
plants grown in the absence of bacterial on rice bran (95.78%), (Fig. 6).
Multifunctional Biofertilizer from Pseudomonas Putida PT: A Potential Approach for Simultaneous Improving …/ Zahra Etemadifar et al. 125
100
c of these compounds on chemotaxis, growth
Cadmium removal from soil (%)
compounds are the advantages of soil before entering the plant, reduce the
immobilized cells in a suitable carrier (29). metal concentration in both soil and plant.
Rice bran, which is produced in large scale The comparison of the performance of two
as the by-product of the rice milling different formulations in the adsorption of
industry, has an insoluble structure in water cadmium showed that the inoculation of
with high stability and mechanical strength the immobilized bacterial cells on rice bran
(37, 38). So, rice bran was used as a was better than the inoculation of bacterial
natural, available and economical carrier cells by seed immersion method. Angular
for P. putida PT immobilization. Also, in surfaces and numerous functional groups
our previous study, rice bran was reported (such as carboxyl and silanol), due to the
as a suitable carrier for immobilization of presence of cellulose, hemicellulose, lignin
P. putida PT which could provide and protein in the rice bran structure, could
appropriate conditions for cells explain the positive effect of this carrier on
proliferation and protection of bacterial metal adsorption capacity of immobilized
cells from undesirable conditions like high bacterial cells (38). In addition, based on
or low temperatures and acidic or alkaline previous finding, rice bran can play an
pH (33). Maize is one of the most important role in metal bioremediation
cultivated grain in the world with low process by providing high population of
production costs and high consumption for viable bacterial cells during plant growth
animal and human, which can be processed period (33).
into many kinds of food and industrial In conclusion, for the first time, we
products, including starch, sweeteners, oil, have designed multifunctional
glue, beverages and fuel alcohol (39). High biofertilizers using P. putida PT by two
amount of toxic metals can be absorbed by different techniques: immobilization of
maize grown in the contaminated soils and bacterial cells on rice bran as an
then arrive into the human food chain (40). economical and available carrier and seed
Length reduction of roots and shoots, leaf immersion method. They can be useful to
bleaching, lowering of photosynthetic promote Z. mays growth in cadmium
activity and reduction of growth and grain contaminated soils with the adsorption of
yield have been reported as the negative cadmium. Also, due to the influence of
effects of cadmium accumulation in maize these biofertilizers in the decrement of soil
in previous studies (41, 42). Therefore, the cadmium concentration, using them can be
final aim of this study was to examine the an eco-friendly approach for cadmium
influences of biofertilizers on maize removal from contaminated areas. In other
growth and cadmium uptake in the Cd- words, inoculation of Z. mays with
contaminated soil. Both biofertilizers had biofertilizers can be used as an alternative
positive effects on the growth of Z. mays. approach to chemical treatments to
According to our previous work, P. putida facilitate plants’ growth without increasing
PT can uptake cadmium from the metal content in the plant aerial tissues and
environment by bioaccumulation and secondary pollutions formed by chemical
biosorption mechanisms (33). Our finding treatments.
in the present study showed that the plant
growth promotion caused by biofertilizers Acknowledgments
was also accompanied by a decrease in the We thank University of Isfahan, and
cadmium concentration in soil and Z. mays Agricultural Research, Educating and
tissues. These results indicate that bacterial Extension Organization, AREEO, Isfahan,
cells by adsorption of cadmium from the Iran for financials supporting of this work.
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