Professional Documents
Culture Documents
MAIN IDEAS
/KEY POINT EXPLANATION NOTES
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SUBTOPIC: 1.2 Domain Bacteria and Archaea
LEARNING OUTCOMES:
a) State the two domain of prokaryotes, Bacteria (E.coli) and Archaea (Sulfolobus sp.)
b) Differentiate between the two domain of prokaryotes, Bacteria (E.coli) andArchaea (Sulfolobus sp.)
based on :-
i. cell wall structure
ii. association of histon to DNA
iii. structure of membrane lipids.
c) Describe the diversity of bacteria
i. cell shapes (coccus, bacillus, spirillum and vibrio)
ii. Gram-stain (Gram-positive, Gram-negative)
d) Explain the roles of bacteria:
i. recycling of chemicals elements in ecosystem (nitrogen fixation e.g. Rhizobium sp.)
ii. symbiotic (enterobacteria e.g E coli in human intestine)
iii. pathogenic e.g.Salmonella sp.)
iv. in research and technology (e.g bacterial plasmid).
MAIN IDEAS
/KEY POINT EXPLANATION NOTES
a) The two The prokaryotes contain two domains, Domain Archaea and
domain of DomainBacteria.
prokaryotes
Domain Archaea
Examples of archaea is Sulfolobus sp.
• It’s a prokaryotic cell of various shapes.
• Adaptations to extreme environments. They can live in aquatic
environments that lack of oxygen or are too salty, too hot or too
acidic for most other organisms.
• Absorb or chemosynthesize food
• Unique cell wall and membranes chemical characteristics.
Domain Bacteria
• An example of bacteria is E.coli
• Diverse prokaryotes widely distributed in various environments.
• Has various shape
• Adaptations to all environments
• Absorb, photosynthesize, or chemosynthesize food
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a.
b.
c.
2. Gram staining
• Techniques proposed by Christian Gram to distinguish the two types of
bacteria (Gram-positive and Gram-negative).
• The gram stain help to determine the types of bacteria based on the
difference in the cell wall structure
Gram-negative Gram-positive
Cell wall consists of thin layers Cell wall consists of thick/multiple
peptidoglycan layers of peptidoglycan
• do not retain the purple • retain crystal violet dye/stained
colour/ stained red purple
• lipoprotein membrane with • thick layer peptidoglycan trap
polysaccharides trap the red violet dye
stain
Not virulent/ Less threatening
More virulent/ pathogenic
pathogens
Streptococcus sp.
Escherichia coli, Salmonella sp.
Staphylococcus sp.
Roles of bacteria
When plants and animals die, they become food for decomposers like
bacteria.
Decomposers recycle dead plants and animals into chemical nutrients
like nitrogen that are released back into the soil, air and water.
Nitrogen fixing bacteria such as cyanobacteria, incorporate nitrogen
from the environment into amino acids and other cellular material.
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Some nitrogen fixers form symbiotic relationships with plants,
providing them with nitrogen.
3. Pathogenic
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LEARNING OUTCOMES:
a) state the unique characteristics of Protista
b) state the classification of Protista based on the unique feature:
i. two major phyla of algae (photosynthetic pigment):
• Chlorophyta (Chlamydomonas sp.)
• Phaeophyta (Fucus sp.)
ii. Four major phyla of Protozoa (locomotion):
• Euglenophyta (Euglena sp.)
• Rhizopoda (Amoeba sp.)
• Ciliophora (Paramecium sp.)
• Apicomplexa (Plasmodium sp.)
c) Explain the roles of Protista in ecological community:
i. roles in CO2 fixation (e.g. phytoplankton)
ii. food source (e.g. Chlorella sp.)
iii. eutrophication/ algal bloom (e.g. green algae)
iv. red tide (e.g. dinoflagellates)
v. human health (e.g. Plasmodium sp. causes malaria)
vi. sewage treatment (e.g Protozoa)
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Kingdom Protista
a) State the
unique Eukaryotic organism. Most are unicellular and some multicellular.
characteristic of Most are microscopic, but some are large. Modes of nutrition:
Protiata Heterotrophic or autotrophic. Reproduced asexual or sexually.
Phylum Chlorophyta
b) State the
classification of
Protista based on
the unique feature:
Phylum Phaeophyta
1. Photosynthetic
• Chlorophyll a + other photosynthetic pigments
2. Not differentiated into stem, leaves or root
• Thallus: an undifferentiated vegetative tissue
3. Habitat
• Water or on damp surfaces
4. Great diversity in structure
• Unicellular
• Simple filamentous
• Colonials
• Huge seaweeds
5. Types of reproduction –
asexual and sexual
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Vegetative reproduction
Fragmentation: The plant body
breaks into several parts or
fragments and each such fragment
develops into an individual. This
type of vegetative reproduction is
commonly metwithin filamentous
forms. Eg: Spirogyra
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Phylum Apicomplexa (Plasmodium sp.)
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Amoeba-sporulation
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b) Budding: Budding:
• Daughter nuclei produced by mitotic division Ciliate protozoan
migrate into a cytoplasmic protrusion(bud) which (phylum Cilophora-
is ultimately separated from the mother cell by Vorticella)
fission.
c) Cysts
• stages with a protective membrane or thickened wall.
• Protozoan cysts that must survive outside the host
usually have more resistant walls than cysts that form in
tissues.
• Some protozoa form cysts that contain one or more
infective forms.
• Multiplication occurs in the cysts of some species so
that excystation releases more than one organism.
• For example, when the trophozoite of Entamoeba
histolytica first forms a cyst, it has a single nucleus.
• As the cyst matures nuclear division produces four
nuclei and during excystation four uninucleate
metacystic amebas appear.
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b) Syngamy:
• The complete and permanent union or fusion of two
specialised protozoan individuals or gametes resulting in
the formation of a fertilized cell or zygote or oospore.
• The nuclei of the gametes fuse to form the zygote nucleus.
• The zygotes develop into adult
MAIN IDEAS
/KEY POINT EXPLANATION NOTES
a) The unique • Eukaryotic
characteristics • Do not contain chlorophyll
of Fungi • Non-photosynthetic
• Absorptive heterotrophs (extracellular digestion)
Release digestive enzymes to break down organic material of
their host
Digest food first & then absorb it into their bodies
• Store food energy as glycogen
• Most are saprophytic – live on other dead organisms
• Heterotrophic
- Parasitic
- Saprophytic
- Mutualist
• Important decomposers & recyclers of nutrients in the environment
• Most are multicellular, but some unicellular like yeast
• The major constituents of the fungal cell wall are chitin, glucans,
and glycoproteins.
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Structural organization
• Basic building units called hyphae
• Form interwoven mat called mycelium
• Not divided into true cells
Mycelium Hyphae
Vegetative part of the fungus, Fine, white branching filaments
consisting hyphae which make up the mycelium
Collection of hyphae Building blocks of the fungus
Look like a patch of threads Look like filaments threads or
or strands strand
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Reproduction in Fungi
• Reproduce both asexually and sexually
• Most fungi are haploid throughout their life cycle
• Sexual reproduction occurs when hyphae of different mating types
(+ and -) meet and fuse together.
b) The
classification of
Fungi phyla
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Phylum Zygomycota
• Spore-bearing structure - zygosporangium
• Zygosporangium contain zygospores (formed by sexual
reproduction)
Rhizopus sp.
Phylum Ascomycota
• Fruiting body – ascocarps. The ascocarps contain the spore
forming asci.
• Spore-bearing structure – asci (singular, ascus).
• Ascus contain ascospores.
• is an important genus of phylum ascomycota, found inthe
natural environment
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Phylum Basidiomycota
• A large and diverse phylum of fungi and most advance fungi.
Example: Agaricus sp.(mushrooms)
• filamentous fungi composed of hyphae.
• Most species reproduce sexually with a club-shaped spore-bearing
organ (basidium) that usually produces four sexual spores
(basidiospores).
• Basidia are borne on fruiting bodies (basidiocarps), which are large
and conspicuous.
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iii. Pathogen
• Some of fungal species are
parasites mostly of plants
• Cause huge economic effects
v. Pharmaceutical (Penicillin)
• Used as antibiotics
(Penicillin).
• Processed from Penicillium
sp. that kills or stops the
growth of certain kinds of
bacteria inside the body.
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MAIN
IDEAS /KEY EXPLANATION NOTES
POINT
a) The Alternation of generations
alternation of • Alternation of generations is a type of life cycle found in terrestrial
generation as plants and some algae in which subsequent generations of individuals
the unique alternate between haploid and diploid organisms.
characteristics • In general, the generations alternate between the
of Plantae sporophytes capable of creating spores
gametophytes, capable of creating gametes.
Sporophyte:
• To form a sporophyte, two haploid gametes come together to form a
diploid zygote (2n).
• When the sporophyte reaches maturity, a key point in thealternation
of generations takes place.
• The sporophyte develops organs, known as sporangia to produce
haploid spores. These spores will be released intothe air or water and
carried away.
• When they reach a suitable environment, they will begin theprocess
of developing into the gametophyte.
Gametophyte
• This represents the next generation in the alternation ofgenerations,
as the haploid spore is created.
• This spore will undergo successive rounds of mitosis to forma new
multicellular individual, the gametophyte.
• Where the sporophyte generation creates spores, the gametophyte
generation creates gametes that produced by gametangia.
• These gametes are then broadcast into the environment, ortransferred
between plants.
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• When they find an opposite gamete, they begin the processof fusing
to form another zygote. This zygote will and eventually become a
sporophyte and the alternation of generations will keep turning.
reproductive cycles to definethe species.
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MAIN
IDEAS /KEY EXPLANATION NOTES
POINT
a) The unique • Simplest group of land plants
characteristics • Live in damp, shady places
of bryophytes • Restricted in size
Very small (1-2 cm in height) To make sure all cells could
obtain enough nutrients
• Non-vascular plants
Lack specialized vascular tissues
• Rely on diffusion and osmosis
• Whole surface of the plant can absorb needed nutrients
• Seedless plants: Produce haploid spores
• No true roots, stems and leaves
• Anchored by rhizoids:
Tiny, root hair-like
structures
• Not composed of tissues
• Lack specialized
conducting cells
• Do not play a primary role
in water and mineral
absorption
• Have flat, broad tissues
that function like leaves
• contain chloroplast for
photosynthesis
• Alternation of generations
Gametophyte: Dominant
• Male gametophyte: antheridia (singular antheridium)
• Female gametophyte: archegonia (singular archegonium)
Sporophyte
• Attached and dependent upon the gametophyte fornutrition
• Smaller and shorter-lived
• The smallest and simplest sporophytes
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b) The The bryophytes are grouped into three divisions/ phyla:
classification
of Bryophytes i. Phylum Hepatophyta (Marchantia sp.)
• Common name – Liverworts, refer to the liver-shaped
gametophytes.
• The gametophyte is flattened shape (thalloid).
• Gametangia elevated on gametophore.
• Sporophytes have a short seta (stalk) with an oval capsule.
Structure of a mature
sporophyte in Marchantia sp.
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c) The ● Drying out: A sterile jacket developed around antheridia and
terrestrial archegonia which prevent them from drying out.
adaptations of
bryophytes
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MAIN
IDEAS /KEY EXPLANATION NOTES
POINT
a) The unique • Vascular plants
characteristics Has true roots, stems and leaves
of Has lignified vascular tissues, and the xylem has tracheids and
pteridophytes sieve tube only for transport and support system
• Seedless
Produce spores
• Non-flowering plants
• Photosynthetic – can maketheir
own food
• The sporophyte is dominant
and easily visible
• Gametophyte is reduced to a
small and simple structure.
• The alternation ofgeneration:
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• Type of spores.
1. Homosporous
• Plants producing one type of spores
• The spores are equal in size
• The spores are produced from the same sporangia.
• The spores developed one kind of gametophyte.
• Spores germinates in soil and produce independentgametophyte.
• Example: Lycopodium sp
2. Heterosporous
• Plants producing 2 types of spores
• Megaspores (large spores) -------------------- female gametophyte
• Microspores (small spores) ------------------ male gametophyte
• The microspores are produces from the microsporangiaand
megaspores are produced from the megasporangia.
• The microspores develop into male gametophytewhereas
the megaspore develops into female gametophyte.
• Spores germinate within sporangia and producedependent
gametophyte.
• Example: Selaginella sp.
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Lycopodium sp.
ii. Pteridophyta
Dryopteris sp.
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MAIN IDEAS
/KEY POINT EXPLANATION NOTES
a) The unique • Non-flowering plants
characteristics • Have true roots, leaves and stems. Therefore, have vascular tissues
of - Xylem with tracheid only
gymnosperms - Phloem with no companion cells
- Vascular cambium leads to secondary growth (wood)
• Naked seed
- Seeds are exposed on the surface of spore producing structures
called sporophylls
• Heterosporous
- Microspores (smaller structure that produce male gametes)
- Megaspores (bigger structure that produce female gametes)
• Reproductive organs are usually bear in cones.
- sporophylls are spirally arranged
- no double fertilization
• Ovules (modified megasporangium)
- Contain the female gametophyte
Alternation of generations
- Sporophyte dominant
- Gametophyte very much reduced
Depends entirely on the sporophyte
No free-living gametophyte
.
Female Cycas sp.
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MAIN
IDEAS /KEY EXPLANATION NOTES
POINT
a) The unique
characteristics
of
Angiosperms
Hibiscus rosa-sinensis
• Flowering plants
Produce flowers and fruits
• True roots, stems, leaves and flowers. Therefore, has a complete
vascular tissue with:
xylem
consists of tracheid and vessel element
Fiber cells: support
Efficient water transport
phloem
consists of sieve tubes and companion cells
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• Seed plants
seed enclosed in fruit
• The most diverse and geographically widespread
Herbaceous and woody plant
• Alternation of generations
Sporophyte
Dominant
The plant body
Gametophyte
Very much reduced
Male gametophyte: Pollen grains
Female gametophyte: Embryo sac
• Reproduce
Asexually Vegetative propagation or producing heterosporous
Sexually Reproduction involves double fertilization:
1(n) sperm with 2 polar nuclei (2n) and becomes
endosperm(3n),
another 1 sperm (n) with 1 egg (n) and becomes zygote (2n)
Endosperm develops into a seed
Zygote develops into an embryo
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Size
Very small Medium Large Large
Dominance of
gametophytes
and Gametophyte Sporophyte Sporophyte Sporophyte
sporophytes
Dependence of
Sporophyte Sporophyte depends
gametophytes
depends on the on the gametophyte Sporophyte is Sporophyte is totally
and
gametophyte for only at the early totally independent independent
sporophytes
the rest of its life development
Water
dependence in Needed - sperm Needed- sperm Not needed- sperm Not needed- sperm
fertilization motile motile non-motile non-motile
Complex vascular
tissue Complex vascular
- lignified vascular tissue
Simple vascular Xylem - tracheids - lignified vascular
Presence of Absent- lack
vascular tissues - lignified only Xylem - tracheids
lignified vascular
tissues vascular Phloem - Sieve and vessels
tubes with no Phloem - Sieve tubes
companion cells and companion cells
Embryo
Protected by the
protection Not protected Not protected Protected by the seed
seed
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MAIN IDEAS
/KEY POINT EXPLANATION NOTES
a) The unique • Eukaryote: Organisms whose cells have a nucleus enclosed within
characteristics of membranes.
Kingdom • Multicellular: Organisms that consist of more than one cell
Animalia • Heterotrophic: Organism that cannot manufacture its own food by
carbon fixation and therefore derives its intake of nutrition from other
sources of organic carbon, mainly plant or animal matter (types of
nutrition is holozoic).
• Store excess carbohydrate as glycogen: Animals store their excess
glucose or energy into glycogen and fats. The glycogen will be kept in
the liver and muscle, meanwhile fats in adipose tissues.
• Complex body system and have differentiated tissues for response to
stimuli and locomotion (e.g: nerve tissues, muscle tissues).
• Reproduce sexually (most): Fusion of male and female gametes.
• Dominant stage in the life cycle is diploid
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Vertebrates
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• Aquatic mainly marine
The majority of sponges are marine, living in seas and oceans.
• Body has an endoskeleton made up of spicules or spongin
The presence and composition of spicules (made up of calcium
carbonate) and spongin are the differentiating characteristics
between the classes of sponges. Some contain either or and some
contain both compositions.
• Reproduction
They are hermaphrodites, meaning that each individual functions as
both male and female in sexual reproduction by producing sperm and
eggs.
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• Feeding mode:
Water flows through the sponge allow for feeding, waste removal
and the intake of oxygen.
A combination of pressure, flagella and contractile movement
pump water
• Types of cells:
i. Flagellated choanocytes, or collar cells
lining the interior of the spongocoel are (named for thefinger-like
projections that form a “collar” around the flagellum). These
cells engulf bacteria and other food particles by phagocytosis.
iv. Porocytes
• specialized cells for the passage of incoming water current and
are located in the body wall of sponges
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Phylum Cnidaria (Obelia sp.)
• Obelia is a genus of
hydrozoans,
• Simple structure
• Mainly live in marine and
some freshwater
• Dimorphism (two distinct
forms) in their life cycle.
i. Medusa form
- Male and female, produce
sperm and egg
- Motile
- mouth and tentacles
directed downwards
ii. Polyp form
- Feeding polyp (has
tentacles)
- Reproductive polyp
(reproduce by budding)
- Non-motile
- mouth and tentacles
directed upwards
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Phylum Platyhelminthes (Taenia sp.)
• Acoelomate
No body cavity
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• Unsegmented
• Excretory system
Protonephridia = 2 lateral canals with branches bearing flamecells
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• Bilaterally_symmetry
• Triploblastic
• Unsegmented
• Pseudocoelomate
• Most are free living found in fresh water, marine, moist soil,
tissues
• Some are parasitic
• Endoparasite
found in guts of humans, pig and tissues of plant
Complete alimentary canal with separate mouth & anus.
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• Nervous system
simple with several ganglia in the head region (but no brain)
nerves extend from ganglia control movement
• Excretory system
a series of excretory tubes that end in an excretory pore
• No circulatory & respiratory systems
• Have hydrostatic skeleton
move to maintain shape and allows for locomotion
move by contracting muscles on alternating sides of the body,
no circular muscle
• Reproduction
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• Bilaterally symmetry
• Triploblastic
• Segmented
• Coelomate -fluid-filled cavity between the gut and other body
organ
• Metameric segmentation
Division of body into a number of segments each containssame
organ (muscles, blood vessels, nerves)
Septum (membrane) between segment
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• Reproduction system
Most reproduce sexually
Dioecious or monoecious
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Phylum Arthropoda (e.g: Valanga sp.)
• Bilateral symmetry
• Triploblastic Organ-system level of organization
• Jointed appendages
Can move rapidly for feeding
Locomotion: escape from predator
• Digestion
Complete digestive system
Modified mouth parts & anus
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• Excretory
Depending as much on their environment as on the
subphylum to which they belong
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• Reproduction
Generally, reproduces sexually
Separate sexes
- Male (smaller size)
Female (bigger size)
• Respiration structure
• Efficient gas exchange. They have variety of respiratory system
such as gill, tracheae, spiracles, book lung
• Asymmetry
• Triploblastic
• Unsegmented body usually with head, foot and visceral hump
• Coelomate
• Mollusks inhabit marine, freshwater, and terrestrial habitats.
• The body plan is similar and distinct from all other phyla
● Visceral mass
Contain most of the internal organs. Example: digestivesystem,
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excretory system, heart
● Mantle
formed from fold of tissue/soft skin that covers visceral organs
have gland that secretes the shell
• Excretory organs
Nephridia
- remove metabolic waste from the hemolymph (body fluid)
● Circulatory system
open / close blood circulation
consists of dorsal heart
● Reproduction
monoecious and dioecious
external development
external & internal fertilization
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• Body symmetry
Larvae - Bilateral symmetry
Adult- Radial symmetry
• Triploblastic
• No body segmentation
• Internal and external parts radiate from centre - five spokes.
• No head
• Mouth generally on lower (oral) surface of body
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The animals in the phylum Chordata share four key features: a notochord,
a dorsal hollow nerve cord, pharyngeal slits, and a post-anal tail.
Notochord
Longitudinal, flexible rod
- located between digestive tube and nerve cord
- later become vertebral column / backbone
Provides skeletal support
- Place for muscle attachment.
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d) The evolutionary i. Level of organization
relationships of Multicellular organisms are made of many parts that are needed for
animals. survival. These parts are divided into levels of organization. There are
five levels: cells, tissue, organs, organ systems, and organisms
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iii. Body symmetry
A basic feature of animal bodies is their type of symmetryor absence of
symmetry.
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iv. Segmentation
Segmentation is the serial repetition of similar organs, tissues, cell
typesor body cavities along the anterior-posterior of bilaterally
symmetric animals.
• The concept of segmentation in biology relies upon the ability
for organisms to duplicate organs structural elements, such as
arms and legs.
• Segmentation allows for a greater degree of variety among
species.
• Different segmentation in arthropods
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