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Homoacetogenesis as the alternative pathway for H2 sink


during thermophilic anaerobic degradation of butyrate
under suppressed methanogenesis

Vilailuck Siriwongrungson, Raymond J. Zeng1, Irini Angelidaki


Institute of Environment & Resources DTU, Technical University of Denmark, DK-2800 Lyngby, Denmark

ar t ic l e i n f o abs tra ct

Article history: Butyrate degradation for hydrogen production under conditions suppressing methanogen-
Received 26 November 2006 esis was evaluated in continuously fed-tank reactors operated at 55 1C and started up with
Received in revised form digested manure as inoculum. This study shows that the reaction of butyrate degradation
16 May 2007 to acetate and hydrogen could happen when gas sparging was applied. Gas sparging was
Accepted 16 May 2007 very important for reducing hydrogen partial pressure and made the reaction thermo-
Available online 25 May 2007 dynamically possible. Almost no hydrogen or methane (methane production was
prevented by the addition of 2-bromoethane-sulfonic acid) was detected, indicating that
Keywords:
the H2 produced from butyrate oxidation was consumed in a subsequent step. It was found
Butyrate degradation
by isotope experiments that hydrogen produced from butyrate degradation reacted
Homoacetogenesis
immediately with CO2 to form acetate via homoacetogenesis. When CO2/HCO
3 was not
Hydrogen
14 provided in the system, butyrate degradation was no longer possible and butyrate-
C isotope
degrading cultures were washed out. It was furthermore found that the microorganisms
Suppressed methanogenesis
responsible for homoacetogenesis were likely present in normal anaerobic environments,
Mixed cultures
such as biogas reactors.
& 2007 Elsevier Ltd. All rights reserved.

1. Introduction hydrogen and carbon dioxide. Then acetogenic bacteria


oxidize propionate, butyrate, and other fatty acids and also
Hydrogen has been widely recognized as an ideal alternative alcohols to acetate, hydrogen and carbon dioxide. Finally,
energy source for fossil fuels. Among the hydrogen production methanogens (Archaea) utilize acetate and hydrogen to form
methods, the most promising and environmentally friendly methane, which is termed as aceticlastic methanogenesis and
method seems to be anaerobic digestion from organic wastes hydrogenotrophic methanogenesis, respectively.
(Benemann, 1996). Anaerobic digestion is an effective biologi- Most of the biohydrogen studies focus on hydrolysis/
cal process to convert complex organic molecules to carbon acidogenesis, but not on acetogenesis. The reason is that
dioxide and methane (Reith et al., 2003). It consists of three acetogenesis requires very low hydrogen partial pressure to
major steps with entirely different groups of microorganisms favor the thermodynamics of the reactions. For example:
involved: hydrolysis/acidogenesis, acetogenesis and methano- butyrate is a very common end product in acidogenesis. The
genesis. At first, the fermentative bacteria hydrolyze the reaction of its degradation to acetate is
polymers to monomers and oligomers, which afterward are
turned to products such as short-chain fatty acids, alcohols, CH3 CH2 CH2 COO þ 2H2 O22CH3 COO þ Hþ þ 2H2 : (1)

Corresponding author. Tel.: +45 4525 1429; fax: +45 4593 2850.
E-mail addresses: r.zeng@awmc.uq.edu.au (R.J. Zeng), ria@er.dtu.dk (I. Angelidaki).
1
Present address: Advanced Wastewater Management Centre, The University of Queensland, St Lucia 4072, Australia.
0043-1354/$ - see front matter & 2007 Elsevier Ltd. All rights reserved.
doi:10.1016/j.watres.2007.05.037
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The standard Gibbs free energy at pH 7 (DG10 ) of Eq. (1) is necessary for unveiling the discussion of production of
48.3 kJ/mol. In order to make Eq. (1) exergonic, hydrogen biohydrogen through acetogenesis.
partial pressure should be lower than 5.82  105 atm under In this study, we aimed to investigate anaerobic butyrate
standard conditions (1 M acetate and butyrate). In the degradation with mixed cultures at thermophilic conditions
anaerobic digestion process, this is normally achieved by under conditions suppressing methanogenesis.
combination with hydrogenotrophic methanogenesis in
which methane becomes the sink for hydrogen. However,
for biohydrogen production, it is inevitable to eliminate the
utilization of hydrogen by methanogenesis. Nevertheless, 2. Materials and methods
there is another potential hydrogen sink in acetogenesis:
acetate. This reaction is termed homoacetogenesis in which 2.1. Reactor setup and operation
hydrogen is used to reduce carbon dioxide to acetate as
follows (Lovley and Klug, 1983): The schematic diagram of continuously stirred tank reactor
used in this study is shown in Fig. 1. The reactor volume was
HCO3  þ 2H2 þ 0:5Hþ 20:5CH3 COO þ 2H2 O: (2) 1 L, with a working volume of 0.7 L. The temperature was
controlled at 55 1C by circulating hot water inside the water
Even though the metabolism of homoacetogenesis has jacket of the reactors. Mixing was provided by a magnetic
been known for years, not many studies have been dedicated stirrer located underneath the reactor. The reactors were
to it. Homoacetogenesis was usually observed under psy- operated at 6-day HRT. The experiments were carried out in
chrophilic conditions as homoacetogens have better ability to two identical CSTR reactors (R1 and R2). They were operated
adapt to low temperatures than hydrogenotrophic methano- in exactly the same way, except for application of sparging by
gens (Kotsyurbenko et al., 2001; Nozhevnikova et al., 2003). anaerobic gas, which was different in the two reactors. R1
Under mesophilic or thermophilic conditions, it was taken for was sparged with 20%CO2/80%N2, while the sparging gas in R2
granted that homoacetogenesis cannot compete with hydro- was 100%N2. A low gas-sparging flowrate at 3 mL/min was
genotrophic methanogenesis because the latter one gener- used to prevent high turbulence inside the reactor. Gas flow
ates more energy (Ahring and Westermann, 1987; Conrad and pH were monitored and liquid samples were sampled
and Klose, 1999; Fang and Jia, 1999). However, Chen et al. daily for analyses.
(2003) reported that when H2 and CO2 were supplied as The inoculum was taken from a lab-scale CSTR reactor
substrate to a municipal solid waste landfill, significant producing methane by digestion of dairy manure at 55 1C. No
acetate accumulation and relatively low methane production pre-treatment was applied to the inoculum. The feed was
were observed, which indicated that homoacetogens out- composed of solutions A and B. Solution A contained basic
competed the hydrogentrophic methanogens in the landfill anaerobic media described previously (Angelidaki and San-
samples. In a study of hydrogen production from wheat ders, 2004). Solution B contained 32.64 mM butyric acid. The
starch, Hussy et al. (2003) found that hydrogen yield mixed influent (from solution A and B with 1:1 volume ratio)
decreased when acetate levels rose, indicating that metabo- contained 2.6 g/L butyrate-COD. It should be noted that
lism shifted toward homoacetogenesis. For biohydrogen buffering chemicals in solution A for R1 and R2 were 0.2 M
production, actually homoacetogenesis is a very important sodium bicarbonate and 0.25 M sodium phosphate, respec-
pathway as it consumes hydrogen and decreases the hydro- tively. 2-Bromoethane-sulfonic acid (BES) (10 mM), a metha-
gen yield. However, not much work has been done on it. nogenic inhibitor, was added once at the beginning of the
Therefore, better understanding of homoacetogenesis is reactor operation.

Sparging pH meter

Feeding Effluent
pH Gas
Gas bottle

sampling
Heating

HBu Media CSTR Gas meter

Effluent bottle
Heating (55°C)

Mixer
Mixer

Fig. 1 – Schematic diagram of butyrate degradation experimental reactor.


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4206 WAT E R R E S E A R C H 41 (2007) 4204– 4210

14
2.2. C isotope batch experiment 15 mL digested manure from a full-scale biogas plant
(Snertinge, Denmark) and 45 mL of solution A. The bottles
The isotope tests were conducted in quadruplicate incuba- were flushed with 20%CO2/80%N2 and then capped with air-
tions and were kept without agitation at 55 1C. One of the tight butyl rubber stoppers and sealed with aluminum seal.
quadruplicate incubations was intermittently sampled for Butyric acid (1 mL, 1.4 M) was added in one bottle. The other
methane using a gas-tight pressure lock syringe at least once one without butyric acid addition worked as the control.
every day. Incubations were performed in 118 mL bottles with
a working volume of 46 mL. R1 effluent at day 14 (44 mL ) was 2.5. Analysis
taken and flushed with 20%CO2/80%N2 to ensure anaerobic
conditions. After flushing, they were capped with air-tight Volatile fatty acids, ethanol and butanol were determined by a
butyl rubber stoppers and sealed with aluminum seal. Then gas chromatograph (HP 5890 series II) equipped with a flame
butyric acid and radioactive H14CO3 (Amersham Pharmacia ionization detector and HP FFAP column (dimensions
Biotech, Buckinghamshire, England) were added. 30 m  0.53 mm  1.0 mm). Lactate and formic acids were
determined by suppressed ion chromatography (Kotsopoulos
2.3. Radioisotope sampling and analysis et al., 2006). Methane, carbon dioxide and nitrogen in the gas
phase were quantified by GC (MicroLab Arhus) equipped with
The liquid and headspace of the incubation bottles were a packed column Porapak Q (50/80 mesh) and a thermal
sparged with approximately 2 L of O2 through a 5 M NaOH trap conductivity detector. Helium was the carrier gas. Since the
to extract 14CH4 and 14CO2 from the incubation bottles. CO2 concentration of hydrogen under sparging conditions was
was trapped in the 5 M NaOH trap, while the sparging gas and very low, hydrogen analysis at trace levels was applied.
14
CH4 were collected in 300 mL vials. For the sparging and Hydrogen was determined by GC equipped with a reduction
collection of the gas phase the following procedure was gas detector. Nitrogen was the carrier gas.
followed: the incubation bottles were connected through a
thin aluminum tube that was inserted through the butyl 2.6. Fluorescence in situ hybridization (FISH)
rubber stopper to a 26 mL anaerobic tube filled with 20 mL 2 M
sodium hydroxide solution to trap the CO2, closed with The liquid samples were taken from R1 at days 11, 23 and 35.
butyl stopper. The headspace of this anaerobic tube was Fluorescence in situ hybridization was performed as de-
connected through a similar aluminum tube to a 300 mL vial. scribed in Karakashev et al. (2005). The probes used and their
HCl (1.2 mL, 7.2 M) was then injected in the incubation bottle, target orders or families are listed in Table 1. A combination of
decreasing the pH of the liquid inside up to 1.570.2. After 1 h EUB338 and EUB338+ targeted all bacteria, while ARC915 was
of equilibration time the dissolved carbon dioxide from for methane-producing Archaea. Samples were visualized by
the acidified liquid was recovered in the CO2 trap. Then the a Zeiss LSM 510 confocal laser-scanning microscope.
incubation bottles were flushed with oxygen for 5 min and
the outlet gas was collected in a 300 mL vial in order to secure
recovery of all 14CH4 and 14CO2 to the 300 mL vial (trap for 3. Results and discussion
methane) and anaerobic tube (trap for carbon dioxide),
respectively. 3.1. R1-butyrate degradation under CO2 20%–N2 80%
The gas collected in the 300 mL vial was combusted (oxygen sparging conditions
inside the vial was used for oxidation) to carbon dioxide in a
tube furnace at 800 1C. The generated carbon dioxide was Fig. 2 shows the profiles of butyrate (HBu), acetate (HAc),
then trapped in two plastic vessels (traps) each containing hydrogen, methane and pH in R1. Ethanol and butanol were
10 mL Carbosorb-E (carbon dioxide absorber for liquid scin- not detected. The reactor was operated continuously from
tillation counting, Packard Bioscience Company, USA). After day 3, with a butyrate feeding rate of 1.91 mmol/d (16.37 mM).
addition of 10 mL Perma Fluor-E+ (Packard Bioscience Com- Butyrate in the reactor was below 2 mM at day 17 and then
pany, USA) scintillation liquid to each vessel, the radioactivity increased to 9.34 mM at day 35. Acetate increased quickly to
due to 14CO2 produced from 14CH4 was analyzed in a liquid 27.23 mM at day 11 and decreased to 11.5 mM at day 35. When
scintillation counter (Tri-Carb 1600, Perkin-Elmer, England). gas sparging stopped after day 35, both butyrate and acetate
The radioactivity originally due to carbon dioxide produced decreased to 5 mM. Hydrogen was very low (or 105–106
was measured by sampling 1 mL of sodium hydroxide hydrogen partial pressure) all the time. Methane was detected
solution from the tubes. After addition of 15 mL Opti Phase at day 14. BES, the methanogenic inhibitor, was added once. It
‘Hi Safe’ 3 (Perkin-Elmer, England) scintillation liquid, the appeared again at day 25. This time, BES addition only slightly
radioactivity was measured in the liquid scintillation counter. inhibited methane production as its production increased
The liquid radioactivity after the sparging was measured in from day 30. pH dropped from 7.07 to 5.65.
the same way and acetate was determined by GC. Fig. 2 clearly demonstrates that butyrate was degraded to
acetate, but with almost no hydrogen production. Where did
2.4. Test of full scale biogas reactor for homoacetogenesis hydrogen go? Hydrogen could have been utilized by hydro-
genotrophic methanogenesis to form methane when
In order to evaluate if homoacetogenesis was occurring in methane was detected. But when methane was not found,
biogas reactors, two 118 mL bottles were used as batch like before day 9, hydrogen should have been used to form
reactors with working volumes of 60 mL. They contained acetate via homoacetogenesis (Eq. (2)). Similar results were
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Table 1 – Oligonucleotide probes used for FISH analyses

Probe Phylogenetic Functional groupa Probe sequence (50 –30 )b Reference


group

EUB338 Bacteria (most) GCTGCCTCCCGTAGGAGT Stahl and Amann


Non-meth (1991)
EUB338+ Bacteria (remaining) GCWGCCACCCGTAGGTGT Daims et al. (1999)
ARC915 Archaea Mainly meth GTGCTCCCCCGCCAATTCCT Stahl and Amann
(1991)
MX825 Methanosaetaceae Aceticlastic meth TCGCACCGTGGCCACACCTAGC Raskin et al. (1994)
MS1414 Methanosarcinaceae Aceticlastic meth (also CTCACCCATACCTCACTCGGG Sekiguchi et al. (1999)
hydrogenotrophic)
MG1200 Methanomicrobiales Hydrogenotrophic meth CGGATAATTCGGGGCATGCTG Sekiguchi et al. (1999)
MC1109 Methanococcales Hydrogenotrophic meth GCAACATAGGGCACGGGTCT Sekiguchi et al. (1999)
MB1174 Methanobacteriales Hydrogenotrophic meth TACCGTCGTCCACTCCTTCCTC Raskin et al. (1994)

a
Meth, methanogenic.
b
W, A+T mixed base.

no feed Feeding with N2/CO2 sparging without sparging


40 8

35 7

30 6
VFA & CH4 (mM)

25 BES 5
BES

pH
20 4

15 3

10 2

5 1

0 0
0 3 6 9 12 15 18 21 24 27 30 33 36 39 42
Day

HAc HBu CH4 pH

Fig. 2 – Profiles of acetate (HAc), butyrate (HBu), methane (mmol per volume of liquid phase) and pH under CO2 20%–N2 80%
sparging in R1.

Table 2 – [2-14C]-Acetate activity analysis results


reported by Bernalier et al. (1996), who found that inhibition
of methanogenesis by BES addition in a biogas reactor Amount of Labeled C-14/std. dev (DPM/mL)
treating pig hindgut content, induced a large increase in
14 14
acetate from CO2 reduction. The observed acetate decrease Beginning Labeled CO2 CH4
HCO3 Acetate
and butyrate increase from days 13 to 35 could be explained
by acetate inhibition. Ahring and Westermann (1988) found 262,105 88,711/9010 154,008/ 1077/
that butyrate degradation could be inhibited when acetate 52,498 136
concentration was higher than 16.4 mM. 100% 33.8/3.4 58.8/20.0 0.4/0.1

14
3.2. C isotope batch experiment

In order to prove the homoacetogenic pathway in R1, an


isotope experiment was performed. As shown in Table 2,
33.873.4% of labeled 14C bicarbonate was converted to 90% of the radioactivity initially applied. Homoacetogenesis
acetate, only 0.470.1% went to 14CH4 and 58.8720.0% was the main pathway in the batch experiment. In other
was unused as 14CO2. The recovery of [14C] with the words, homoacetogenic bacteria were playing an important
combination of [2-14C]-acetate, 14CO2, and 14CH4 was above role in R1.
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4208 WAT E R R E S E A R C H 41 (2007) 4204– 4210

In addition, thermodynamic calculations also supported, to Homoacetogenesis (Eq. (2)) requires CO2 or bicarbonate,
some extent, the fact that homoacetogenesis was occurring which must come from the influent as butyrate degradation
in R1. From Eq. (3), which is derived by combining Eqs. (1) and (Eq. (1)) does not produce CO2. According to this hypothesis, if
(2), we can see that 1 mol of butyrate generates 2.5 mol of neither CO2 nor HCO 3 would be provided to the system,
acetate. butyrate would not be degraded.

CH3 CH2 CH2 COO þ HCO3  22:5CH3 COO þ 0:5 Hþ : (3)


3.3. R2-butyrate degradation under N2 sparging
The standard Gibbs free energies at pH 7 (DG10 ) of Eqs. (1)–(3) conditions
are 48.3, 52.3 and 4 kJ/mol, respectively. According
to Nernst’s equation (DG ¼ DG1+RT ln K), DG values of The operation conditions of R2 were the same as R1 except
Eqs. (1)–(3) were calculated as 2.17, 1.04 and 3.21 kJ/mol, that phosphate instead of bicarbonate was the buffer and the
respectively, using the actual measured concentrations of sparging gas was only N2. Fig. 3 illustrates that acetate started
acetate (27.23 mM), butyrate (1.46 mM), bicarbonate (0.1 M) to increase and reached the maximum on day 13 at 22.23 mM,
and H2 (7.16  105) at day 14 (Fig. 2). These DG values indicate while butyrate decreased to 2.77 mM. After 14 days, the
that Eqs. (1)–(3) were thermodynamically possible. In this degradation of butyrate declined. The amount of butyrate
study, homoacetogenesis instead of methanogenesis likely started to accumulate steadily before the degradation
became the sink of hydrogen to make the reaction of butyrate stopped. On the contrary, the acetate began to drop con-
degradation to acetate thermodynamically possible. However, tinuously to 0.56 mM. Methane was encountered on days 23
the energy yields in Eqs. (1)–(3) were marginally negative. This and 24. After BES was applied on day 23, no more methane
would explain the hardness of obtaining stable steady state was detected. The average hydrogen partial pressure before
conditions in R1. It should be noted that the calculations did day 14 was in the order of 105 atm. pH decreased gradually
not consider the energy requirement for microbial growth, from 7.46 to 4.43. Ethanol and butanol were not detected
which is about 20 kJ/mol. Using this consideration, reactions Compared with R1, R2 was much harder to maintain
1–3 will be thermodynamically unfavorable. However, Jackson butyrate degradation. The increase of butyrate from day 14
and McInerney (2002) found that anaerobic microbial meta- indicates that butyrate-degrading microorganisms were
bolism by syntrophic associations (like reactions 1 and 2) slowly washed out. This was likely caused by non-favorable
could occur at values close to thermodynamic equilibrium conditions for the hydrogen sink as both homoacetogenesis
(DG0 E0 kJ/mol). Under thermophilic conditions, Zinder and and hydrogenotropic methanogenesis require CO2/HCO 3.
Koch (1984) revealed that aceticlastic methanogenesis was Furthermore, the maximum acetate yield in R2 was 1.45 mol
performed via acetate oxidation (opposite to homoaceotogen- acetate per mol butyrate degraded, which was lower than the
esis), indicating acetate oxidation was favorable under one in R1 (1.64/mol). All these results again support the fact
thermophilic conditions. Our results prove that that homo- that homoacetogenesis was occurring in R1. As the inoculum
acetogenesis can take place under thermophilic conditions. was cultivated directly from manure digester without pre-
This might suggest that acetate oxidation and homoaceto- treatment, homoacetogenic bacteria exist in full-scale biogas
genesis are both possible under thermophilic conditions. systems.

No feed Feeding with N2 sparging


40 9

35 8

7
30
VFA & CH4 mM

6
25
5
BES
pH

20
4
15
3
10
2
5 1

0 0
0 3 6 9 12 15 18 21 24 27 30 33 36
Day

HAc HBu CH4 pH

Fig. 3 – Profiles of acetate (HAc), butyrate (HBu), methane (mmol per volume of liquid phase) and pH under N2 sparging in R2.
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60 4

VFA (mM)/methane (%)

HAcchanged/HBuchanged
PI PII

30 2

0 0
0 2 4 6 8 10 12 14 16
Day

HAc HBu methane ΔHAc/ΔHBu

Fig. 4 – Profiles of acetate, butyrate, methane and ratios of HAc increase to HBu decrease from days 4 to 8 in the batch
experiment. These values have deducted the values in the control experiment without butyrate addition.

Table 3 – Microorganism variability via FISH results in R1

Day Acetate (mM) Methane (mM) Dominatea Non-dominateb

11 27.23 EUB ARC, MB


23 15.47 0.03 EUB ARC, MB
35 11.50 12.65 EUB, ARC MB, MC

EUB: bacteria; ARC: Archaea; MC: Methanococcales; MB: Methanobacteriales.


a
Dominate, found more than 40%.
b
Non-dominate, found less than 20%.

3.4. Homoacetogenesis in full-scale reactors through interspecies hydrogen transfer, such as during metha-
nogenesis or homoacetogenesis, must be prevented. HRT is a
The results of batch tests with inoculum from a full-scale well-known operating parameter to separate hydrogen and
biogas plant are shown in Fig. 4. The butyrate degradation methane production (Liu et al., 2006; Reith et al., 2003) as the
course can be described as follows: after an initial lag phase of growth rates of hydrogen producing bacteria (o2 days) are
half a day, butyrate degradation started. Butyrate degradation much faster than methane-producing Archaea (b2 days).
seems to follow two different phases: phase I (0.5–4 days) and However, it is hard to avoid hydrogen loss via homoacetogen-
phase II (4–8 days), with different butyrate degradation rates. esis by HRT only. Oh et al. (2003) reported obvious hydrogen loss
After 8 days, butyrate was completely depleted. The acetate via homoacetogenesis after 1 day in a batch study.
profile was opposite to the butyrate profile in PI and PII. It
reached peak concentration (32 mM) at day 8 and dropped 3.5. Diversity of microorganisms in R1
dramatically after day 12. Methane concentration rose
gradually to 14.1% at day 4 and jumped to 25.5% at day 6, The diversity of microorganisms via FISH in R1 is shown in
then increased slightly to 31.9% at day 13, and finally reached Table 3. Bacteria dominated the samples at days 11 and 23,
60% when acetate was zero which was a typical aceticlastic while hydrogenotrophic methanogenic Archaea were non-
methanogenesis. The hydrogen concentration was very low dominated. At day 35, Archaea shared the domination with
(o 0.1%) in this test. It is noted that the background values in bacteria. These microbiological results were consistent with
Fig. 4 have been deducted in the control batch. the process data in Fig. 2. When methane was low, bacteria
When compared with the values at day 4, the ratios of were the dominating microorganisms in the reactor. When
increased acetate (DHAc) to decreased butyrate (DHBu) in PII methane was detected high amount at day 35, Archaea
(Fig. 4) were always higher than 2 (mol/mol), which was the started to dominate. This observation, although obvious,
theoretical acetate yield in Eq. (1). This strongly indicates that underlines that methanogens were not the H2 scavengers
homoacetogenesis was occurring during phase PII, otherwise during butyrate degradation and definitely supports the fact
the ratio should be lower than 2. To achieve hydrogen that in the absence of competition from methanogens,
production from mixed culture fermentations, loss of hydrogen homoacetogenesis starts to dominate. It is also important to
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4210 WAT E R R E S E A R C H 41 (2007) 4204– 4210

remark that absence of methanogenesis would not permit detection of all bacteria: development and evaluation of a
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Acknowledgment stage fermentation process. Water Res. 40 (11), 2230–2236.
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The authors wish to acknowledge the financial support of the methylamines and acetogenesis from hydrogen and carbon-
Danish Research Agency STVF Project No. 2058-03-0020 and dioxide in the sediments of a eutrophic lake. Appl. Environ.
Microbiol. 45 (4), 1310–1315.
DTU Ph.D. scholarship for the first author.
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