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Contents
Foreword xvii
About the Editors xix
List of Abbreviations xxi
Index 397
xvii
Foreword
This book with many critically important chapters is addressing key topics in
biopharmaceutical research & development and innovation. It aims at explaining
new modalities to diagnose, prevent, and treat human diseases. It also provides
real examples (case-in-points) of prototypes of innovative approaches that are
tested in biological systems of increasing size, complexity, and relevance where
the early phase spans from individual receptors over cell, organ systems to first
therapeutic exploration in small and well-defined patient populations. It debates
the latest know-how and the common commitment to the vision of a revitalized and
impactful biopharmaceutical development as well as other characters such as reg-
ulatory and health technology agencies instrumental to completing the journey of
medicines development, i.e. delivering to the respective patient population. This is a
recognition of the current environment where patient advocacy groups demanding
equitable access to affordable, quality products in reasonable timeframes.
The editors’ vision of recognizing the science of decision-making or ‘decision
science’ as an important process in medicines development is commendable. This
is often neglected in books addressing the process of medicines development. The
quality decision-making process as an integral part of medicines development has
a much higher chance of leading to quality outcomes. It can be argued that a poor
quality or bad decision-making process could lead to a good outcome; however,
this could only happen by chance. For example, applying quality decision-making
process by incorporating validated methodologies for benefit-risk assessment into
guidance for regulatory review. Such approaches are all twenty first century best
practices, which will have the outcomes of improved predictability, accountability,
consistency, and transparency of a public health focused, science-based medicines
development.
The book’s editors are active or former pharmaceutical executives who have
been lecturing biopharmaceutical innovation, pharmacology, and pharmaceutical
medicine over decades and who have brought together 27 experts in medicines
development to write the 21 chapters addressing development of biopharmaceuti-
cals/pharmaceuticals from molecule to market place. The chapters have focused
on the evaluation of many aspects of pre-clinical and clinical development very
helpful to students in biopharmaceutical sciences, pharmaceutical medicine, and
life science management. These chapters also provide insights that can be of benefit
xviii Foreword
to not only those engaged in biomedical postgraduate studies but also to those
early career researchers involved in medicines development. Undoubtedly, this
comprehensive body of work will improve scientific, regulatory, and reimbursement
processes and more efficiently facilitate access to quality versions of needed medical
products.
It is my hope that this book and the research it contains will provide significant
insight into pre-clinical and clinical development of biopharmaceuticals as well
as fostering innovation and quality decision-making practices applied to key
milestones of medicines development. I believe the roadmap provided in this book
could be considered as a blueprint for other health technology innovations, whether
a new active substance or an incremental innovation.
Professor Sam Salek, PhD, RPh, FFPM, GFMD, FRPS, FESCP, MCMS
Professor of Pharmacoepidemiology
Head – Public Health and Patient Safety Research Group
School of Life and Medical Sciences
University of Hertfordshire, UK
List of Abbreviations
More than
Abbreviations Meaning one meaning
More than
Abbreviations Meaning one meaning
More than
Abbreviations Meaning one meaning
CP Centralized procedure
CPP Critical process parameters
CQA Critical quality attributes
CRO Contract research organization
CRP C-reactive protein
CSE Cystathionine-γ-lyase
CSP Clinical study protocol
CT Computed tomography
CTA Clinical trial application
CTD Common technical document
CUA Cost–utility analysis
CYP Cytochrome P450
CyTOF Cytometry by time-of-flight
DCDS Development core data sheet
DD Due diligence
DDI Drug–drug interaction
DDP Drug development pathway or design and 1
development plan
DEL DNA-encoded chemical libraries
DLTs Dose-limiting toxicities
DMC Data monitoring board
DMF Drug master file
DMSO Dimethyl sulphoxide
DNA Deoxyribonucleic acid
DoH Declaration of Helsinki
DP Drug product or decentralized procedure 1
DRF Dose-range finding
DSMB Data safety monitoring board
EAC Endpoint adjudication committee
EAP Early access program
EC Ethics committee
ECG Electrocardiogram
ECHA European Chemical Agency
ED Exectile dysfunction
ED50 50% of the test objects show the expected effect
EDMF European drug master file
EFD Embryofetal development
EGF Epidermal growth factor
ELISA Enzyme-linked immunosorbent assay
EMA European Medicines Agency
EoP End-of-phase
xxiv List of Abbreviations
More than
Abbreviations Meaning one meaning
More than
Abbreviations Meaning one meaning
More than
Abbreviations Meaning one meaning
IP Intellectual property
IPI Swiss Federal Institute of Intellectual Property
IPO Initial public offering
IPR Intellectual property right(s)
IPRP International preliminary report on patentability
iPS (cell) Induced pluripotent stem cells
IQVIA Company name, formerly Quintiles and IMS
Health, Inc.
IQWiG Institut für Qualität und Wirtschaftlichkeit im
Gesundheitswesen
IRB Institutional Review Board
ISO International Organization for Standardization
ISP Indication-specific pricing
ISR Injection site reactions
ITT Intent-to-treat population
IVD In vitro diagnostics
IVDR In vitro Diagnostic Device Regulation
JAK Just another kinase (Janus kinase)
JNK c-Jun N-terminal kinases
KCNQ Potassium channel, voltage-gated, KQT-like
subfamily
Kir-channel Inwardly rectifying K+ channel
Km Michaelis constant
KOL Key opinion leader
LADME Liberation/absorption/distribution/
metabolism/elimination
LCM Life Cycle Management
LD Loading dose or lead discovery 1
LD50 Lethal dose for 50% of the animals
LDL Low-density lipoprotein
LDT Lab developed test
LO Lead optimization
LoE Loss of exclusivity
LoI Letter of intent
LRV Lower reference value
MA&P Market access and pricing team
MAA Marketing authorization application
mAb Monoclonal antibody
MABEL Minimum anticipated biological effect level
MAD Multiple ascending doses
MALDI-TOF Matrix-associated laser desorption/ionization
List of Abbreviations xxvii
More than
Abbreviations Meaning one meaning
More than
Abbreviations Meaning one meaning
More than
Abbreviations Meaning one meaning
More than
Abbreviations Meaning one meaning
More than
Abbreviations Meaning one meaning
Summary
Principles of Biomedical Sciences and Industry: Translating Ideas into Treatments, First Edition.
Edited by Markus Hinder, Alexander Schuhmacher, Jörg Goldhahn, and Dominik Hartl.
© 2022 WILEY-VCH GmbH. Published 2022 by WILEY-VCH GmbH.
2 1 Biopharmaceutical Innovation at a Glance
Tools
● Pharmacology
● Pharmacokinetics
● Toxicology
● Clinical studies
● Project and portfolio management
● IP management
Regulatory framework
● National and regional drug approval regulations
● International Conference on Harmonization (ICH)
● Declaration of Helsinki (DoH)
Risks
● Strategic risks, such as enormous R&D investments
● External risks, such as drug approval regulations
● Internal risks, such as degree of predictivity of early trials for late-stage development
Success factors
● Understanding molecular mechanisms
● Disease understanding
● Biomarkers
To alleviate or even cure human disease has always been an area of paramount
interest and activity of mankind. Documentation from around the globe (e.g. Middle
East, India, China, America) indicates that since ancient times people observed and
collected information about techniques to treat human disease. The oldest available
documents are approximately 4000 years old and date from approximately 2000
1.1 Biopharmaceutical Innovation and Drug Development, the Past and Present 3
B.C. (papyrus Ebers (1500 BC) and papyrus Kahun (1800 BC)). From ancient times
up to the Middle Ages, the key source to finding ways to treat human disease were
trial and observation and in many cases folk memory to preserve useful knowledge.
Thus, the first treatments were rather found by chance than actively discovered.
Pharmacology as a scientific discipline, which deals with the discovery and char-
acterization of xenobiotics to treat diseases, is a relatively young discipline and had
to wait until physics, chemistry, and biology had established themselves as sciences
and laid the foundations for a scientific understanding of human health and disease.
Until the 1950s, classical (forward) pharmacology dominated the scientific
approach to find new medicines. During this time, most of the discoveries focused
mainly on medications providing symptomatic amelioration or relief as opposed to
changing long-term prognosis of patients suffering from a disease or treatment of
risk factors (Drews 2000).
Drug approval in the early days was often restricted to small series of clinical tests
demonstrating that the desired effects were detectable. Systematic testing in broad
populations of interest and a systematic approach to investigating a drug’s preclinical
and clinical safety only became a prerequisite on both sides of the Atlantic after two
drug disasters became public (1930 Sulfanilamide and 1960 Thalidomide) (Paine
2017; Silverman 2002). Subsequently, more and more processes and standards
which were related to drug discovery and more importantly drug approval became
standardized and regulated – thus today’s notion of a highly regulated industry.
In 1990, the Japanese Ministry of Health, Labour and Welfare (MHLW), the
American Food and Drug Administration (FDA), and the European Medicines
Evaluation Agency (EMEA, today EMA) agreed on common procedures and
standards that apply to the investigation approval of new drugs in all three countries
and regions. These standards are laid down in the documents of the ‘International
Council for Harmonisation of Technical Requirements for Pharmaceuticals for
Human Use’, often just called ICH (ICH, n.d.). From the 1990s on, some researchers
started to discuss a ‘productivity crisis’ in the biopharmaceutical industry. Since
these times, productivity, determined as the number of new drugs approved, and
efficiency, determined as the ratio of investments needed by the number of new
drugs approved, are figures that are constantly watched by decision makers inside
and outside of the biopharmaceutical industry. Recent analyses indicate that
discovering and bringing a new drug to the market need investments in the range
of US$ 5–10 billion (Schuhmacher et al. 2016).
The more drugs became available to treat a specific condition and the more
drugs were used as chronic or preventive treatments, the more long-term clinical
safety became a focus area. Altered benefit/risk assessments in this context led to
marketing withdrawals for numerous approved drugs from nearly all therapeutic
areas. Prominent examples include some fluoroquinolone antibiotics, some per-
oxisome proliferator-activated receptor agonists, cyclooxygenase 2 inhibitors and
anti-histaminics and ant-psychotics, just to name a few. Based on these experiences,
health authorities started to require prior to approval of a new medicine an active
risk exclusion approach. In other words, the long accepted ‘no difference approach’
4 1 Biopharmaceutical Innovation at a Glance
to demonstrate clinical safety was abandoned by an active process able to rule out
a certain degree of hazard (Brass et al. 2006).
The core responsibility of a pharmaceutical company towards society is to discover
and develop solutions which help patients to lead a better and longer life. In order
to generate the necessary cash flow which can be invested in R&D, many companies
have focused in the past on the so-called blockbuster model, i.e. on products with
worldwide sales in excess of US$ 1 billion/year. Traditionally, these were products
at relatively low daily dosage cost in highly prevalent diseases and thus large world-
wide populations. Triggered by an improved mechanistic understanding of diseases
and genetics enhancing the identification of new drug targets, the biopharmaceuti-
cal sector has developed in recent years more and more medicines to treat so-called
orphan diseases which by definition affect less than 1 in 2000 people (Trusheim et al.
2007). By today, orphan drugs represent around one-eighth of worldwide prescrip-
tion drug sales indicating the importance of this new market segment (Waters and
Urquhart 2019).
With more and more competitive drugs entering the market and the availability of
a plethora of therapeutic options in the highly prevalent diseases, the question arises,
how to best invest scarce healthcare resources. As a reaction, payors around the globe
have at different pace and to different extent started to ask the ‘value for money’
question. This has led to a situation, where a new drug today needs to conform or
exceed the quality, safety efficacy (QSE) requirements set forth by health authorities
to gain marketing authorization on the one hand. On the other hand, these new
medicinal products need to demonstrate their cost-effectiveness before they can be
reimbursed by national health insurers and other payors.
References
Drews, J. (2000). Drug discovery: a historical perspective. Science 287 (5460): 1960–1964.
ICH (n.d.). International Council for Harmonisation of Technical Requirements for
Pharmaceuticals for Human Use (ICH). https://www.ich.org/ (accessed 3 October
2020).
Paine, M.F. (2017). Therapeutic disasters that hastened safety testing of new drugs. Clin.
Pharmacol. Ther. 101 (4): 430–434.
Schuhmacher, A., Gassmann, O., and Hinder, M. (2016). Changing R&D models in
research-based pharmaceutical companies. J. Transl. Med. 14 (1): 105.
Silverman, W.A. (2002). The schizophrenic career of a “monster drug”. Pediatrics 110
(2 Pt 1): 404–406.
Trusheim, M.R., Berndt, E.R., and Douglas, F.L. (2007). Stratified medicine: strategic
and economic implications of combining drugs and clinical biomarkers. Nat. Rev.
Drug Discovery 6: 287–293.
Waters, R. and Urquhart, L. (2019). Evaluate Pharma. World Preview, Outlook to 2024.
https://www.evaluate.com/thought-leadership/pharma/evaluatepharma-world-
preview-2019-outlook-2024 (accessed 27 September 2020).
7
Summary
This chapter covers (i) basics of pharmacology such as dosage forms, routes of
administration, delivery to the target site, (ii) pharmacodynamics (PD), and (iii)
pharmacokinetics (PK) and provides (iv) examples of its use in drug discovery
and development. In particular, basic principles of drug–target receptor inter-
actions, agonistic and antagonistic mechanisms of action (MoA), liberation/
absorption/distribution/metabolism/elimination (LADME) phases of PK, dosage
forms, PK/PD modelling, drug–drug interactions (DDIs), drug transporters, aspects
of clinical pharmacology, therapeutic window/index calculations, and illustrative
examples of how these tools are utilized in drug discovery and development are
provided.
Tools
● In vitro systems
● In vivo systems
● Genetics
● Screening
● Modelling
Regulatory framework
● ICH
(Continued)
Principles of Biomedical Sciences and Industry: Translating Ideas into Treatments, First Edition.
Edited by Markus Hinder, Alexander Schuhmacher, Jörg Goldhahn, and Dominik Hartl.
© 2022 WILEY-VCH GmbH. Published 2022 by WILEY-VCH GmbH.
8 2 Pharmacology and Drug Targets – The Basis of Therapeutics
(Continued)
Risks
● Limited understanding of pathophysiology
● Target validation/reproducibility
● Lack of appropriate models
Success factors
● Translating pre-clinical compounds into drugs for patients
2.1 Introduction
After human health was believed to be determined solely by God and fate for long
times, the theory of humourism (also known as the four humours) developed
in antiquity under the influence of important Greek savants as Hippocrates and
Galen dominated Western medicine until modern times. In his works, Galen wrote
numerous texts on the composition and manufacture of medicines and gave his
name to the Galenic formulation of medicines. In the sixteenth century, the famous
savant Paracelsus also included chemical substances in drug therapy. Under his
influence, the pharmacy laboratory also gained more importance. During the course
of the industrialization in the nineteenth century, pharmaceutical industry evolved
from pharmacies specialized on the manufacturing of pharmaceuticals and the
tar and paint industry. At that time, the prevailing teaching of humoral pathology
was replaced by the research of the physician Rudolf Virchow and based on it the
so-called cellular pathology and formed the fundament for science-based medicine.
Pharmacology (greek for ‘pharmacon’: drug and ‘-logos’: doctrine/knowledge of)
explores interactions between compounds and organism and describes it in a quan-
titative and qualitative manner (Tozer and Rowland 2016; Simmons 2011). The term
pharmacon describes the active element of a drug and is non-judgemental; e.g. it
contains no statement if the substance is harmful (poison) or healing (drug).
The interaction between drug and organism can be classified in three phases:
1. Pharmaceutical phase
The pharmaceutical phase includes administration and drug release. This is
decisively determined by the type of administration (e.g. oral, intravenous
(iv), intramuscular, subcutaneous, inhalative, epicutaneous, sublingual, and
rectal) and the galenics (composition and manufacture of drugs). Together with
so-called adjuvants, the drug becomes a dosage form. Galenics can be used, for
example, to influence the duration of action, the concentration of the active
substance in the blood and sometimes even the site of action.
2. Pharmacokinetics (PK)
Pharmacokinetics deals with the concentrations of a drug in the body and is
affected by all processes to which a drug is exposed to in the body. Pharma-
cokinetics includes absorption, distribution, metabolism and excretion of a
compound (ADME).
2.1 Introduction 9
3. Pharmacodynamics (PD)
Pharmacodynamics describes the effect of the drug on the organism. Here, bind-
ing to a target (e.g. receptors, ion channels, enzymes, and bacterial metabolism)
and the resulting biological effect play a major role. The pharmacological effect
of a substance can be divided into desirable and undesirable effects (side effects).
Drug/
Disease
formulation
Demographics Co-medication
Individual
dose/
regimen
Efficacy
Safety (risk)
(benefit)
Figure 2.1 Factors influencing the interaction between a drug and an organism. Source:
Book editors based on Hartl, Fink, and Beer-Hammer.
10 2 Pharmacology and Drug Targets – The Basis of Therapeutics
adeno-associated virus vector therapies) which can show different dynamics over
time and are not covered here even though the basic concepts of pharmacology
still hold.
2.2 Pharmacodynamics
Pharmacodynamics:
● Type of action (profile and quality)
● Mechanisms of action (MoA)
● Place of action
● Potency
● Efficacy
Specific substances interact with defined endogenous target molecules that are
structurally proteins such as receptors, transporters, and enzymes, DNA, RNA, or
lipids. They already act in low dosages or concentrations, and their effect depends on
the chemical structure and thus on the shape, size, and stereochemical arrangement
of the molecule. The specific effect also means that a drug affects as selectively as
possible on the target structures.
● chemically produced
b) Large molecules/biomolecules
● recombinant proteins or monoclonal antibodies
Small molecules are mostly less specific in their action than biomolecules or mon-
oclonal antibodies; they can bind to receptors other than the target (off-target bind-
ing) which can result in unwanted side effects (off-target toxicity, which is compound
specific). Strong inhibition of a pathway by on-target binding can also induce adverse
effects (on-target toxicity, which is target-specific), for instance, immunosuppressive
drugs often lead to higher infection risks. At the molecular pharmacological level,
2.3 Receptors and Ion Channels 11
specificity implies that the drug binds to its target with sufficient affinity and has the
ability to enhance or inhibit its function as a result of this binding.
Unspecific substances are characterized by the fact that they do not react specif-
ically with endogenous compounds and that they do not change their effect if the
chemical modification is not too profound.
Most pharmacological effects can be attributed to a few MoA:
● Interaction with membrane receptors (stimulation or inhibition)
● Opening or blockade of voltage-dependent or ligand-controlled ion channels
● Regulation of gene transcription by binding to intracellular receptors
● Influence of transmembrane or intracellular transporters
● Inhibition or activation of enzymes
signal transduction of most oncogenes. MAP kinases are divided into four groups:
extracellular signal-regulated kinases (ERK), c-Jun N-terminal kinases (JNK), p38
kinases, and as a special ERK form ERK5. The signalling cascade of ERK is mainly
stimulated by growth factors, JNK and p38 kinases are active in the presence of
stress stimuli such as cytokine release, UV radiation, heat or osmotic shock. ERK5,
on the other hand, is activated by both growth factors and stress stimuli. Receptors
with tyrosine kinase activity include the receptors of insulin, insulin-like growth
factor (IGF-1), as well as various other growth factors (e.g. vascular endothelial
cell factor [VEGF], epidermal growth factor [EGF], fibroblast growth factor [FGF],
and platelet-derived growth factor [PDGF]). Insulin and IGF-1 each consist of two
α- and β-subunits, which are linked by disulphide bridges. The other growth factors,
however, are monomeric proteins that dimerize only after ligand binding. The
dimerization leads to autophosphorylation of tyrosine residues in the cytosolic part
of the receptor. This generates docking sites for signalling proteins that bind to the
phosphorylated residues of the receptor. In this way, receptor tyrosine kinases are
coupled to the Ras signalling cascade, which controls cell growth and proliferation.
Receptors with associated tyrosine kinases, like the growth factor receptors,
are monomeric membrane proteins with a transmembraneous region, which in turn
dimerize after ligand binding, but the receptor group does not possess its own tyro-
sine kinase domain. This group of receptors includes numerous cytokine receptors
as well as growth hormone, prolactin, and erythropoietin receptors. Upon activa-
tion and dimerization, just another kinase (JAK) proteins dock and phosphorylate
tyrosine residues of the receptor. As a result, signal transducers and activators of
transcription (STAT) proteins associate with the phosphorylated receptor domains.
The associated STAT proteins are then also phosphorylated by JAK kinases. Finally,
the phosphorylated STAT proteins dimerize, are translocated into the nucleus and
activate transcription of specific genes.
Receptors with guanylyl cyclase activity (membrane-bound guanylyl cyclase)
in particular comprise the receptors for natriuretic peptides and the intestinal hor-
mone guanylin. These monomeric transmembrane proteins, like the receptors with
tyrosine kinase activity, have an extracellular binding site for the activating ligand
and an intracellular enzyme domain. When a ligand binds to receptors with guanylyl
cyclase activity, their guanylyl cyclase domain is activated. As a consequence, GTP is
formed into cyclic guanosine monophosphate (cGMP) which, as second messenger,
triggers further reactions, e.g. the relaxation of smooth muscle cells or the secretion
of chloride in the intestinal lumen.
Receptor serine/threonine kinases include the receptors of transforming
growth factor-β (TGF-β), of which two types, TGF-β-R-I and TGF-β-R-II, exist. Also,
the cytokine bone morphogenetic protein 2 (BMP2) unfolds its action by means
of such a receptor type. TGF-β is a local cytokine which acts via TGF-β receptors
and is associated with healing processes but also fibrosis of tissue, e.g. diabetic
nephropathy, renal and pulmonary fibrosis, as well as cardiac remodelling after
myocardial infarction. Angiotensin converting enzyme (ACE) inhibitors reduce the
release of TGF-β. The transduction mechanism of TGF-β receptors is the following:
initially, TGF-β binds to TGF-β-R-II and then forms a heterodimer together with
14 2 Pharmacology and Drug Targets – The Basis of Therapeutics
As physiological ligands drugs can interact as exogenous ligands with the receptor.
The prerequisite for this is a drug (D)–receptor (R) complex. This is dependent on the
affinity of the drug to the receptor. The higher the affinity, the higher the tendency
that the drug forms a complex with the receptor. Hereby, the receptor can exist in
two conformations, in an inactive (R) and in an active (R*) state. Both conformations
16 2 Pharmacology and Drug Targets – The Basis of Therapeutics
Substances that both bind to and stimulate the receptor are agonists (Figure 2.2).
Substances which reduce or completely abolish a receptor-mediated effect are
antagonists.
Substances which bind to a constitutively active receptor shift their equilibrium to
the inactive state and reduce the proportion of constitutively active receptors even
more than at basal levels are called inverse agonists.
Agonists possess affinity as well as intrinsic activity. The intrinsic activity is
usually indicated as relative intrinsic activity α. This is proportional to the quotient
of the effect EA triggered by the agonist and the maximum possible effect Em in the
biological system. The maximum relative intrinsic activity is evident as α = EA /Em .
Agonists with an intrinsic activity of 1 are named as full agonists. Agonists with
an intrinsic activity >0 and <1 are named partial agonists. Partial agonists are
Signal
+ Agonist Effect
Receptor transduction
Agonist
Competitive No signal
+ No effect
antagonist transduction
Receptor
Robin Adair.