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Thorp and Covich's Freshwater

Invertebrates: Keys to Nearctic Fauna


4th Edition James H. Thorp
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Thorp and Covich’s Freshwater Invertebrates

A Global Series of Books on the Identification,


Ecology, and General Biology of Inland Water Invertebrates
by Experts from Around the World

Fourth Edition
Series Editor: James H. Thorp

Volume I: Ecology and General Biology


Edited by James H. Thorp and D. Christopher Rogers
Published 2015

Volume II: Keys to Nearctic Fauna


Edited by James H. Thorp and D. Christopher Rogers
Published 2016

Volume III: Keys to Palaearctic Fauna


Edited by D. Christopher Rogers and James H. Thorp
Expected Publication Date: 2017

Volumes in Preparation and Under Contract


Keys to Neotropical and Antarctic Fauna
Keys to Neotropical Hexapoda
Keys to Fauna of the Australian Bioregion

Possible Future Volumes of the Fourth Edition


Keys to Oriental and Oceana Fauna
Keys to Oriental and Oceana Hexapoda
Keys to Palaearctic Hexapoda
Keys to Afrotropical Fauna
Keys to Afrotropical Hexapoda

Related Publications
Ecology and Classification of North American Freshwater Invertebrates
Edited by J.H. Thorp and A.P. Covich
First (1991), Second (2001), and Third (2010) Editions
Field Guide to Freshwater Invertebrates of North America
by J.H. Thorp and D.C. Rogers
Keys to Nearctic Fauna
Thorp and Covich’s Freshwater
Invertebrates - Volume II

Fourth Edition

Edited by

James H. Thorp
D. Christopher Rogers

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Dedications from the Editors

To Henry B. Ward, George C. Whipple, W. Thomas Edmondson, and


Robert W. Pennak—pioneers who blazed a publishing trail with books
on the ecology and identification of North American freshwater invertebrates.
To Alan P. Covich, a longtime friend and valued
colleague, who not only helped develop the first three editions
but also made possible the fourth edition’s improved taxonomy and
worldwide coverage by introducing the current editors to each other.
James H. Thorp and D. Christopher Rogers
Contributors to Volume II

Fernando Álvarez [Chapter 16] Departamento de Cristina Damborenea [Chapter 5] División Zoología
Zoología, Instituto de Biología, U.N.A.M., Circuito Invertebrados, Museo de La Plata, FCNyM-UNLP,
exterior s/n, Ciudad Universitaria, Copilco, Coyoacán, Paseo del Bosque, 1900 La Plata, Argentina; email:
A.P. 70-153, México, Distrito Federal. C.P. 04510, cdambor@fcnym.unlp.edu.ar
México; email: falvarez@servidor.unam.mx R. Edward DeWalt [Chapter 16] Illinois Natural History
Bonnie A. Bain [Chapter 12] Department of Biological Survey, Center for Biodiversity, 607 East Peabody Drive,
Sciences, Southern Utah University, Cedar City, Utah Champaign, Illinois 61820, USA; email: edewalt@inhs.
84720, USA; email: bain@uss.edu illinois.edu
llse Bartsch [Chapter 16] Forschungsinstitut Senckenberg, Genoveva F. Esteban [Chapter 2] Conservation Ecology
c/o DESY, Gebaeude 3, Raum 316, Notkestr. 85, 22607, and Environmental Sciences Group, Faculty of Science
Hamburg, Germany; email: bartsch@meeresforschung.de and Technology, Bournemouth University, Dorset,
Valerie Behan-Pelletier [Chapter 16] Agriculture and United Kingdom; email: gesteban@bournemouth.
Agri-Food Canada, K.W. Neatby Building, 960 Carling ac.uk
Avenue, Ottawa, Ontario K1A 0C6, Canada; email: James W. Fetzner Jr. [Chapter 16] Biodiversity Services
­valerie.behan-pelletier@agr.gc.ca Facility, Section of Invertebrate Zoology, Carnegie
Matthew G. Bolek [Chapter 10] Department of Zoology, Museum of Natural History, 4400 Forbes Avenue,
Oklahoma State University, 501 Life Sciences West, Pittsburgh, Pennsylvania 15213-4080, USA; email:
Stillwater, Oklahoma 74078, USA; email: bolek@ FetznerJ@CarnegieMNH.org
okstate.edu Bland J. Finlay [Chapter 2] School of Biological and
Ralph O. Brinkhurst [Chapter 12] 205 Cameron Court, Chemical Sciences, Queen Mary University of London,
Hermitage, Tennessee 37076, USA The River Laboratory, Wareham, Dorset, BH20 6BB,
United Kingdom; email: b.j.finlay@qmul.ac.uk
Francisco Brusa [Chapter 5] División Zoologia Inverte­
brados, Museo de La Plata, FCNyM-UNLP, 1900 La Stuart R. Gelder [Chapter 12] Department of Science and
Plata, Argentina; email: fbrusa@fcnym.unlp.edu.ar Math, University of Maine at Presque Isle, Presque Isle,
Maine 04769, USA; email: stuart.gelder@umpi.edu
Richard D. Campbell [Chapter 4] Department of Develop­
mental and Cell Biology, University of California, Irvine, Fredric R. Govedich [Chapter 12] Department of Biological
CA, USA; post mail: 2561 Irvine Ave., Costa Mesa, Sciences, Southern Utah University, 351 West University
California, 92627 USA; email: rcampbel@uci.edu Blvd, Cedar City, Utah 84720, USA; email: govedich@
suu.edu
Joo-lae Cho [Chapter 16] Invertebrate Research Division,
National Institute of Biological Resources, Environmental Daniel L. Graf [Chapter 11] The Academy of Natural
Research Complex, Gyoungseo-dong, Incheon, 404-170, Sciences, 1900 Benjamin Franklin Parkway, Philadelphia,
South Korea; email: Joolae@Korea.kr Pennsylvania 19103, USA; email: grad@acnatsci.org
David R. Cook [Chapter 16] 7725 North Foothill Drive Roberto Guidetti [Chapter 15] Department of Biology,
South, Paradise Valley, Arizona 85253, USA; email: University of Modena and Reggio Emilia, via Campi
watermites@msn.com 213/D, 41125, Modena, Italy; email: roberto.guidetti@
Kevin S. Cummings [Chapter 11] Illinois Natural History unimore.it
Survey, Center for Biodiversity, 607 East Peabody Ben Hanelt [Chapter 10] Department of Biology, Univer­
Drive, Champaign, Illinois 61820, USA; email: ksc@ sity of New Mexico, 163 Castetter Hall, Albuquerque,
inhs.uiuc.edu New Mexico 87131, USA; email: bhanelt@unm.edu

xi
xii Contributors to Volume II

Brenda J. Hann [Chapter 16] Department of Biological Anna J. Phillips [Chapter 12] Smithsonian Institution,
Sciences, W463 Duff Roblin, University of Manitoba, National Museum of Natural History, Department of
Winnipeg, Manitoba R3T 2N2, Canada; email: hann@ Invertebrate Zoology, 10th and Constitution Ave, NW,
cc.umanitoba.ca Washington, DC 20560-0163, USA; email: phillipsaj@
Tom Hansknecht [Chapter 16] Barry A. Vittor and si.edu
Associates, Inc., 8060 Cottage Hill Rd., Mobile, George O. Poinar Jr. [Chapter 9] Department of Zoology,
Alabama 36695, USA; email: bvataxa@bvaenviro.com Oregon State University, Corvallis, Oregon 97331,
David J. Horne [Chapter 16] School of Geography, USA; email: poinarg@science.oregonstate.edu
Queen Mary University of London, Mile End Road, Wayne Price [Chapter 16] Department of Biology,
London E1 4NS, United Kingdom; email: d.j.horne@ University of Tampa, 401 W. Kennedy Blvd., Tampa,
qmul.ac.uk Florida 33606, USA; email: wprice@ut.edu
Julian J. Lewis [Chapter 16] Lewis & Associates LLC, Roberto Pronzato [Chapter 3] Dipartimento di Scienze
17903 State Road 60, Borden, Indiana 47106-8608, della Terra, dell’Ambiente e della Vita (DISTAV),
USA; email: lewisbioconsult@aol.com Università di Genova, Area Scientifico-Disciplinare 05
Lawrence L. Lovell [Chapter 12] Research Associate, (Scienze biologiche), Settore BIO/05, Genova, Italy;
Polychaetous Annelids, Research & Collections, Natural email: pronzato@dipteris.unige.it
History Museum of Los Angeles County, 900 Exposition Lorena Rebecchi [Chapter 15] Department of Biology,
Blvd., Los Angeles, California 90007, USA; email: University of Modena and Reggio Emilia, via Campi
­lllpolytax@gmail.com 213/D, 41125, Modena, Italy; email: lorena.rebecchi@
Tobias Kånneby [Chapter 7] Department of Zoology, unimore.it
Swedish Museum of Natural History, 10405, Stockholm, Janet W. Reid [Chapter 16] Virginia Museum of Natural
Sweden; email: tobias.kanneby@nrm.se History, 1001 Douglas Avenue, Martinsville, Virginia
Renata Manconi [Chapter 3] Dipartimento di Scienze 24112, USA; email: jwrassociates@sitestar.net
della Natura e del Territorio (DIPNET), Università Vincent H. Resh [Chapter 16] Department of Environmental
di Sassari, Muroni 25, I-07100, Sassari, Italy; email: Science, Policy, and Management, University of California,
r.manconi@uniss.it 305 Wellman Hall, Berkeley, California 94720, USA;
William E. Moser [Chapter 12] Smithsonian Institution, email: resh@berkeley.edu
National Museum of Natural History, Department of Dennis J. Richardson [Chapter 12] School of Biological
Invertebrate Zoology, Museum Support Center, 4210 Sciences, Quinnipiac University, 275 Mt. Carmel
Silver Hill Road, Suitland, Maryland 20746, USA; Avenue, Hamden, CT 06518, USA; email: Dennis.
email: moserw@si.edu Richardson@quinnipiac.edu
Diane R. Nelson [Chapter 15] Department of Biological D. Christopher Rogers [Chapters 1, 11, 16] Kansas Bio­
Sciences, East Tennessee State University, Johnson logical Survey and Biodiversity Institute, Higuchi Hall,
City, Tennessee 37614-1710, USA; email: janddnel- University of Kansas, 2101 Constant Avenue, Lawrence,
son@yahoo.com Kansas 66047, USA; email: branchiopod@gmail.com
Carolina Noreña [Chapter 5] Departamento Biodiversidad S.S.S. Sarma [Chapter 8] Laboratorio de Zoología
y Biología Evolutiva, Museo Nacional de Ciencias Acuática, Unidad de Morfología y Función, Facultad de
Naturales (CSIC), Madrid, España; email: norena@mncn. Estudios Superiores, Universidad Nacional Autónoma
csic.es de México, Av. de lo Barrios, no. 1, Los Reyes,
Roy A. Norton [Chapter 16] SUNY College of Environ­ Tlalnepantla, Edo. de Méx. C.P. 54090, México; email:
mental Science and Forestry, 134 Illick Hall, 1 Forestry sssarma@gmail.com
Drive, Syracuse, New York 13210, USA; email: ranorton@ Andreas Schmidt-Rhaesa [Chapter 10] Zoological Museum,
esf.edu University Hamburg, Martin Luther-King. Platz 3, 20146
Alejandro Oceguera-Figueroa [Chapter 12] Laboratorio Hamburg, Germany; email: andreas.schmidt-rhaesa@uni-
de Helmintologiá, Instituto de Biologiá, Universidad hamburg.de
Nacional Autoñoma de México, Tercer circuito s/n, Hendrik Segers [Chapter 8] School of Freshwater Biology,
Ciudad Universitaria, Copilco, Coyoacán. A.P. 70-153, Belgian Biodiversity Platform, Royal Belgian Institute
Distrito Federal, C. P. 04510, México; email: aoceguera@ of Natural Sciences, Vautierstraat 29, B-1000, Brussels,
ib.unam.mx Belgium; email: Hendrik.Segers@naturalsciences.be
Contributors to Volume II xiii

Alison J. Smith [Chapter 16] Department of Geology, Robert J. Van Syoc [Chapter 16] California Academy
Kent State University, Kent, Ohio 44242, USA; email: of Sciences, Department of Invertebrate Zoology
alisonjs@kent.edu and Geology, 55 Music Concourse Drive, San
Ian M. Smith [Chapter 16] Systematic Acarology, Environ­ Francisco, California 94118, USA; email: Bvansyoc@
mental Health Program, Agriculture and Agri-Food calacademy.org
Canada, K.W. Neatby Building, 960 Carling Ave., Ottawa, L. Cristina de Villalobos [Chapter 10] Facultad de Ciencias
Ontario K1A 0C6, Canada; email: smithi@agr.gc.ca Naturales y Museo, Departamento de Invertebrados,
T.W. Snell [Chapter 8] School of Biology, Georgia Institute Paseo del Bosque S/N 1900 La Plata, Argentina; email:
of Technology, 310 Ferst Drive, Atlanta, Georgia 30332, villalo@fcnym.unlp.edu.ar
USA; email: terry.snell@biology.gatech.edu Robert L. Wallace [Chapter 8] Department of Biology,
Malin Strand [Chapter 6] The Swedish Species Information Ripon College, 300 Seward Street, Ripon, Wisconsin
Centre, Swedish University of Agricultural Sciences, 54791, USA; email: wallacer@ripon.edu
Uppsala, Sweden; email: malin.strand@slu.edu Elizabeth J. Walsh [Chapter 8] Department of Biological
Per Sundberg [Chapter 6] Department of Zoology, University Science, University of Texas at El Paso, 500 W.
of Gothenburg, P.O. Box 463, SE-405 30 Gothenburg, University Avenue, El Paso, Texas 79968, USA; email:
Sweden; email: P.Sundberg@zool.gu.se ewalsh@utep.edu

Christopher A. Taylor [Chapter 16] Curator of Fishes Alan Warren [Chapter 2] Department of Life Sciences,
and Crustaceans, Prairie Research Institute, Illinois Natural History Museum, Cromwell Road, London SW7
Natural History Survey, University of Illinois at Urbana- 5BD, United Kingdom; email: a.warren@nhm.ac.uk
Champaign, 1816 S. Oak, Champaign, Illinois 61820, Timothy S. Wood [Chapters 13, 14] Department of
USA; email: ctaylor@inhs.illinois.edu Biological Sciences, Wright State University, 3640
Roger F. Thoma [Chapter 16] Midwest Biodiversity Insti­ Colonel Glen Highway, Dayton, Ohio 45435, USA;
tute, 4673 Northwest Parkway, Hilliard, Ohio 43026, email: tim.wood@wright.edu
USA; email: cambarus1@mac.com Fernanda Zanca [Chapter 10] Facultad de Ciencias
James H. Thorp [Chapters 1, 11, 12] Kansas Biological Naturales y Museo, Departamento de Invertebrados,
Survey and Department of Ecology and Evolutionary Paseo del Bosque S/N 1900 La Plata, Argentina; email:
Biology, University of Kansas, 2101 Constant Avenue, fmzanca@fcnym.unlp.edu.ar
Lawrence, Kansas 66047, USA; email: thorp@ku.edu
About the Editors

field and lab. While his research emphasizes aquatic inver-


tebrates, he also studies fish ecology, especially as related
to food webs. He has published more than hundred refereed
journal articles, books, and chapters, including three single-
volume editions of Ecology and Classification of North
American Freshwater Invertebrates (edited by J.H. Thorp
and A.P. Covich) and the first volume (Ecology and General
Biology) in the current fourth edition of Thorp and Covich’s
Freshwater Invertebrates.

Dr. James H. Thorp has been a Professor in the Depart-


ment of Ecology and Evolutionary Biology at the University
of Kansas (Lawrence, KS, USA) and a Senior Scientist in
the Kansas Biological Survey since 2001. Prior to returning
to his alma mater, Prof. Thorp was a Distinguished Profes-
sor and Dean at Clarkson University, Department Chair and
Professor at the University of Louisville, Associate Professor
and Director of the Calder Ecology Center of Fordham Uni-
versity, Visiting Associate Professor at Cornell, and Research
Ecologist at the University of Georgia’s Savannah River Ecol-
ogy Laboratory. He received his Baccalaureate from the Uni- Dr. D. Christopher Rogers is a research zoologist at the
versity of Kansas (KU) and both Masters and PhD degrees University of Kansas with the Kansas Biological Survey and
from North Carolina State. Those degrees focused on zool- is affiliated with the Biodiversity Institute. He received his
ogy, ecology, and marine biology with an emphasis on the PhD degree from the University of New England in Armi-
ecology of freshwater and marine invertebrates. Dr. Thorp has dale, NSW, Australia. Christopher specializes in freshwa-
been on the editorial board of three freshwater journals and ter crustaceans (particularly Branchiopoda and Decapoda)
is a former President of the International Society for River and the invertebrate fauna of seasonally astatic wetlands
Science. He teaches freshwater, marine, and general ecologi- on a global scale. He has numerous peer reviewed publi-
cal courses at KU, and his master’s and doctoral graduate cations in crustacean taxonomy and invertebrate ecology,
students work on various aspects of the ecology of organ- as well as published popular and scientific field guides and
isms, communities, and ecosystems in rivers, reservoirs, and identification manuals to freshwater invertebrates. Christo-
wetlands. Prof. Thorp’s research interests and background pher is an Associate Editor for the Journal of Crustacean
are highly diverse and span the gamut from organismal biol- Biology and a founding member of the Southwest Associa-
ogy to community, ecosystem, and macrosystem ecology. He tion of Freshwater Invertebrate Taxonomists. He has been
works on both fundamental and applied research topics using involved in aquatic invertebrate conservation efforts all over
descriptive, experimental, and modeling approaches in the the world.

xv
Preface to the Fourth Edition

Those readers familiar with the first three editions of our Our concept for T&C IV included producing one book
invertebrate book (Ecology and Classification of North (Volume I, published in late 2014 with a 2015 copyright
American Freshwater Invertebrates, edited by J.H. Thorp date) with 6 chapters on general environmental issues
and A.P. Covich) will note that the fourth edition has applicable to many invertebrates, followed by 35 chapters
expanded from a North American focus to worldwide cov- devoted to individual taxa at various levels (order to phy-
erage of inland water invertebrates. We gave our book series lum, or even multiple phyla in the case of the protozoa).
on inland water invertebrates the name Thorp and Covich’s Volume I was designed both as an independent book on
Freshwater Invertebrates to: (1) associate present with past ecology and general biology of various invertebrate taxa
editions, unite current volumes, and link to future editions; and as a companion volume for users of the keys in the
(2) establish a connection between the ecological and gen- regional taxonomic volumes, thereby reducing the amount
eral biology coverage in Volume I with the taxonomic keys of information duplicated in the taxonomic volumes. The
in the remaining volumes; and (3) give credit to Professor perhaps 10 taxonomic volumes to be published in the next
Alan Covich for his work on the first three editions. For the decade or so will contain both keys for identifying inverte-
sake of brevity, we refer to the current edition as T&C IV. brates in specific zoogeographic regions and descriptions of
Whether the fifth edition of T&C will ever appear is cer- detailed anatomical features needed to employ those keys.
tainly problematic, but who knows! At present we are con- While the vast majority of authors in T&C editions
sidering producing up to 11 volumes in the fourth edition. I–III were from the United States or Canada, we attempted
While I am the sole editor of the book series at this in T&C IV to attract authors from many additional coun-
point, Christopher has been a major and highly valued part- tries in six continents. Although we largely succeeded in
ner in developing ideas for the fourth edition and is thus this goal, we expect the fifth edition of T&C—if it is ever
far an editor on the first three volumes (senior editor on the published—to continue increasing the proportion of authors
third). He will also play a major role in many of the remain- from outside North America as our books become better
ing volumes because of his diverse and global knowledge of known internationally.
freshwater invertebrates, especially in the area of taxonomy. Our goals for T&C IV are to improve the state of taxo-
As we made significant progress on the first three volumes, nomic and ecological knowledge of inland water inverte-
we began contacting some potential coeditors and authors brates, help protect our aquatic biodiversity, and encourage
to develop volumes for other zoogeographic regions and more students to devote their careers to working with these
negotiations with a few of those volumes are now under- fascinating organisms. These goals are especially impor-
way. However, we are still seeking experts in fields of tant because the verified and probable losses of species in
invertebrate taxonomy for various zoogeographic regions to wetlands, ponds, lakes, creeks, and rivers around the globe
serve as highly dependable coeditors, especially those who exceed those in most terrestrial habitats.
both work and live in the zoogeographic regions covered by
the various future volumes. James H. Thorp

xvii
Preface to Volume II

This is the second volume of the fourth edition of Thorp and We have asked authors to include only taxa that are
Covich’s Freshwater Invertebrates (T&C IV) and the first to recognized internationally by publication in reputable sci-
focus almost exclusively on taxonomy. Information on the entific journals that follow the International Code of Zoo-
ecology and general biology of the groups can be found in logical Nomenclature. Thus, no taxa that have merely been
Volume I (Ecology and General Biology, edited by Thorp proposed should be included even if they have been identi-
& Rogers, 2015), the companion text for the current and all fied by the world’s expert on that group. “Common” species
remaining books in this series. All taxonomic volumes (other are not designated because a common species in one area
than those focused exclusively on Hexapoda) are expected may not be common in another, and this designation can
to consist of an introductory chapter, a chapter on protozoa lead to overly frequent and false identifications. Authors
(multiple kingdoms), and 14 chapters on individual phyla have been encouraged to end the keys at the point where
from Cnidaria to Arthropoda. Some of the chapters are very further identification without genetic analysis is not practi-
small (e.g., Chapter 14 on Entoprocta), whereas others are cal or when it is clear that too many of the extant fauna have
huge, especially Chapter 16 on Arthropoda. yet to be described in scientific publications.
A typical chapter includes a short introduction, a brief Users of these keys need to realize that taxonomy is
discussion of limits to identification of taxa in that chapter, a growing and vibrant field in which new taxa are being
important information on terminology and morphology that described and previously accepted relationships reevalu-
is needed to use the keys, techniques for preparing and pre- ated. For some users, this volume may be sufficient for their
serving material for identification (also covered in Volume I), needs, but for others, a companion text listing known species
the taxonomic keys, and a few references. In the large chap- in a smaller geographic region may also be helpful.
ters on Mollusca (11), Annelida (12), and Arthropoda (16), This edition is strongly focused on species found in
different individuals have contributed separate sections, and fresh through saline inland waters, with a nonexclusive
thus there are multiple sections on introduction through emphasis on surface waters, thereby reflecting the bias
keys and references. While this may confuse some readers, of existing scientific literature. Again, most estuarine and
it has allowed us to gain contributions from an increased parasitic species are not covered in this book, but we do
number of experts around the world. discuss species whose life cycle includes a free-living
The multilevel keys are formatted to enable users to work stage (e.g., Nematomorpha) and species that live in hard
easily at the level of their taxonomic expertise and the needs freshwaters through to brackish waters even though they
of their project. For that reason, we separated keys by major may be normally associated with estuarine or marine habi-
taxonomic divisions. For example, a student in a college tats in some parts of their life cycles (e.g., some shrimp
course might work through one or more of the initial crus- and crabs).
tacean keys to determine the family in which a freshwater It is our hope that scientists and students from around
shrimp belongs. In contrast, someone working on an environ- the world will benefit from this volume. Suggestions for
mental monitoring project might need to identify a crayfish improving future volumes are welcome.
or crab to genus or even species, and thus would use the rele-
vant, detailed keys that require more background experience. Editors
We also designed the keys, where possible, to proceed from a James H. Thorp
general to a specific character within a couplet. D. Christopher Rogers

xix
Acknowledgments for Volume II

Many people contributed to this volume in addition to the production from the original concept to the final market-
chapter authors and those acknowledged in individual chap- ing. In particular, we appreciate our association with Else-
ters. We greatly appreciate all our colleagues who have con- vier editors and production team including Candace Janco,
tributed information, figures, or reviews to Volume II, and Rowena Prasad, Laura Kelleher, and the entire United States
also thank those who provided similar services for the earlier and overseas production teams, especially Julia Haynes.
editions, upon which the present book partially relies. We are
again grateful to the highly competent people at Academic James H. Thorp
Press/Elsevier who helped in many aspects of the book’s D. Christopher Rogers

xxi
INTRODUCTION
Chapter 1

Introduction1
James H. Thorp
Kansas Biological Survey and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, USA

D. Christopher Rogers
Kansas Biological Survey and Biodiversity Institute, University of Kansas, Lawrence, KS, USA

Chapter Outline
Introduction to This Volume and Chapter 1 1 Key to Kingdoms and Phyla in This Volume 3
Components of Taxonomic Chapters 1 References4
How to Use This Volume 2

INTRODUCTION TO THIS VOLUME among volumes vary in specificity of their taxonomic keys.
AND CHAPTER 1 This reflects both the likely percent of the fauna that has
been named and how easily taxa can be separated by alpha
This is the second volume in the fourth edition of Thorp and taxonomic methods and associated keys.
Covich’s Freshwater Invertebrates. Unlike the first three
editions of Ecology and Classification of North American
Freshwater Invertebrates (edited by Thorp and Covich in
COMPONENTS OF TAXONOMIC CHAPTERS
1991, 2001, and 2010), the fourth edition has been split This volume is an identification manual to the inland water
into multiple texts, with Volume I (Thorp & Rogers, 2015) invertebrates of the Nearctic Region where we present infor-
providing global coverage of the ecology, general biol- mation needed to diagnose and determine these organisms
ogy, phylogeny, and collection techniques for inland water to various taxonomic levels. Other information concerning
invertebrates. Subsequent volumes provide keys to identify ecology, morphology, physiology, phylogeny, and both col-
fauna in specific zoogeographic regions. This division of lecting and culturing techniques can be found in Volume I of
volumes enabled us to produce reasonable sized volumes this series. Each of the remaining 15 chapters in the current
at relatively moderate prices instead of publishing one mas- volume is limited to a single phylum, except Chapter 2’s
sive, high priced tome. While some labs may have multi- coverage of multiple phyla of unicellular protists. Chapter 2
ple copies of the “Keys to Fauna” in their region, we also is designed for readers who only need general information
recommend that they have at least one copy of Volume I, about protists. We have attempted to include the following
in order to obtain useful background information on each five sections in those chapters: (1) a brief introduction to
invertebrate group. the broader taxon; (2) a description of identification limi-
The current chapter is organized into an introduction, tations for each taxon; (3) details of pertinent terminology
a section explaining the organization of most taxonomic and morphology; (4) information on preparing and preserv-
chapters, and a key to larger taxonomic groups. This chap- ing specimens for identification; and (5) taxonomic keys
ter’s key is designed to help the reader locate the most per- (separated by level of identification). A restricted number
tinent chapter (important probably only for students and of especially pertinent references are given in each chapter
beginning taxonomists) and begin identifying organisms in following appropriate taxonomic sections. Readers can find
their samples. Readers will note that chapters within and a much more extensive list of references to their group in

1. This chapter was written to be a useful starting point for taxonomic volumes (II, III, etc.) in all zoogeographic regions. Consequently, there will be only
minor differences among volumes.

Thorp and Covich’s Freshwater Invertebrates. http://dx.doi.org/10.1016/B978-0-12-385028-7.00001-9


Copyright © 2016 Elsevier Inc. All rights reserved. 1
2 Thorp and Covich’s Freshwater Invertebrates
INTRODUCTION

Volume I (Chapters 3 and 7–41) along with more details on correct identification answer is always present in the key. This
collecting, preparation, and preserving major taxa. Figures assumption generally takes one of the following three forms:
in each chapter are limited to those needed for effective use
1. A ll species are identifiable using a given key. Many new
of the keys. For additional anatomical information, including
species have yet to be described, let alone discovered.
figures, see the relevant chapter in Volume I.
Generalized geographic ranges are provided for most
taxa presented herein, yet species ranges shrink, swell,
HOW TO USE THIS VOLUME and change elevation constantly, particularly as weather
and climate patterns shift. Species disperse, colonize, and
There is an old maxim that says “keys are written by people
suffer stochastic local extinctions. In addition to these
who do not need them for people who cannot use them.” We
natural processes, some species are introduced inten-
have made every effort to make these keys as user friendly
tionally or accidentally by humans, and sometimes their
as publication limitations would permit.
establishment allows other species to invade as well.
Each section begins with a basic introduction to the
2. All variation is accounted for in the key. As stated above,
morphology and terminology used in diagnosing the taxa of
identification keys use specific, primary, diagnostic
that section. Limitations to the current state of taxonomic
characters. Problems in identification are compounded
knowledge are also presented so that the reader may gauge
by taxa that: (a) have different character states at differ-
the reliability of the information presented. Only the estab-
ent times; (b) only have diagnostic characters at certain
lished, peer reviewed scientific literature was used to define
life stages or in certain genders; and/or (c) have severely
the taxonomic categories and epithets included. All names,
truncated morphology (often due to lack of sexual selec-
as far as we are aware, conform to the International Code
tion) and lack morphological characters to separate the
of Zoological Nomenclature (ICZN). All nomina and tax-
species. Furthermore, new variation within taxa is con-
onomic arrangements used, as well as the rejection of old
tinually developing, and thus, one cannot assume that
names was based on peer reviewed scientific literature.
species are immutable or develop tools predicting those
Names from unpublished manuscripts, dissertations, “in
changes.
house” designations, or records that have not been validated
3. The key is a sufficient identification tool in and of itself.
are not acceptable. Provisional names and species designated
A key is just a tool. The fact that one has a bolt that needs
“taxon 1” or “species 1” were not used unless they were pre-
removing and a wrench of the correct size does not mean
viously recognized and accepted in the peer reviewed scien-
that the bolt can be loosened. Similarly, identification
tific literature (Richards & Rogers, 2011). No new species
keys are tools to aid in taxon identification. They are pri-
descriptions or previously unpublished taxonomic arrange-
marily tools to eliminate incorrect taxa from the range
ments are presented.
of possible choices, narrowing the field to the names
The keys are dichotomus (no triplets or quadruplets are
that may be applicable. Keys are the process of elimina-
used) and are hierarchical. Thus, for a given group, the first
tion. The possibility that the specimen to be identified is
keys are to the highest taxonomic category. The second set
new, a hybrid, anomalous, or a recent invasive colonist is
of keys is to the next level, the third set to the level below
always a possible answer. This is fundamental to using
that one, and so on, down to the lowest justifiable taxonomic
any identification key.
level based on current knowledge of that group. This level
is different for different groups depending upon the state of Once one arrives at a name or group of possible names
resolution in the scientific literature. Organisms not identifi- for a specimen in hand, the specimen should then be com-
able beyond a particular taxonomic level are left at that level. pared against descriptions, distribution maps, and figures
Properly prepared keys typically employ specific, pri- of that and other taxa in that group. The descriptions, fig-
mary, diagnostic characters. Older keys often use different ures, and maps are other tools to be used in identification.
characters than the more recent keys. This shift in primary Direct comparison of the specimen at hand with identified
characters results from systematists and taxonomists testing museum material or using molecular comparisons is also
the importance of characters. The ultimate goal of the sys- sometimes necessary for a correct identification.
tematist is to ensure that the interpretation of which char- Species are not immutable, fixed in location and form.
acters are important will converge with biological reality. They change constantly and will continue to do so, con-
To a non-taxonomist, this process may seem merely to be founding keys and any other identification method, such
“lumping and splitting,” rather than the result of employing as trait tables, character matrices, or even genetic analyses.
the scientific method to reveal natural relationships. This is why biology is far behind physics in the develop-
Surprisingly, many users do not know how to interpret a ment of unified theories: biology is far more complex than
dichotomus key, making the fundamental assumption that a physics, as it involves more interacting parts and processes.
Chapter | 1 Introduction 3

INTRODUCTION
KEY TO KINGDOMS AND PHYLA levels of interest, need, and skill without having to wade
through extraneous taxa not in the direct line to the taxon
IN THIS VOLUME
of interest.
A major change in the identification keys for our fourth The following key was derived in part from Chapter 1 in
edition has been to include multiple keys per chapter that Volume I of the fourth edition. It is meant to allow you to
generally start with a class level key and proceed to finer move to the next level of keys, which will be in individual
and finer divisions. These allow users to work at their chapters.

Freshwater Invertebrate Kingdoms and Phyla


1 Multicellular, heterotrophic organisms as individuals or colonies (sometimes with symbiotic autotrophs)........................... kingdom Animalia
.................................................................................................................................................................................................................................. 2
1’ Unicellular (or acellular) organisms present as individuals or colonies with nuclei irregularly arranged; heterotrophic and/or autotrophic;
multiple phyla within the autotrophic protozoa phyla ....................................................................................... kingdom Protista [Chapter 2]
2(1) Radially symmetric or radially asymmetric organisms living individually or in colonies ............................................................................. 3
2’ Individuals bilaterally symmetric ................................................................................................................................................................... 4
3(2) Surface not porus; oral tentacles always present around a closeable mouth; colonial or single, mostly single polyp forms (primarily hydra)
or rarely medusoid form (freshwater jellyfish); adults with a single central body cavity opening to the exterior and surrounded by cellular
endoderm, acellular mesoglea, and cellular ectoderm ....................................................................................... phylum Cnidaria [Chapter 4]
3’ Surface porus; colonial; tentacles absent; no closable orifices; without discrete organs; cellular-level (or incipient tissue-level) construction;
variable, non-distinct colony shapes, including encrusting, rounded, or digitiform growth forms; skeleton of individual siliceous spicules
and a collagen matrix; internal water canal system; may contain symbiotic algae; the sponges ....................... phylum Porifera [Chapter 3]
4(2) Oral region with numerous tentacles or cilia distributed around the mouth; organism never with eversible jaws and never vermiform as
adult ................................................................................................................................................................................................................ 5
4 Oral region with two or no tentacles, or tentacles behind the mouth ............................................................................................................. 7
5(4) Oral region with tentacles, organisms in gelatinoids or branching colonies .................................................................................................. 6
5’ Oral region ringed with cilia, muscular pharynx (mastax) with complex set of jaws; single free swimming, or semi-sessile living singly or
in small colonies; wheel animals, or rotifers ...................................................................................................... phylum Rotifera [Chapter 8]
6(5) Oral tentacles (the lophophore) in a “U” or “horseshoe” shape around mouth; anus opens outside of lophophore; colonial animals, often in
massive colonies attached to hard surfaces; true bryozoans ....................................................... phylum Ectoprocta (Bryozoa) [Chapter 13]
6’ Both mouth and anus open within lophophore; individual (non-colonial) animals with a calyx containing a single whorl of 8–16 ciliated
tentacles ........................................................................................................................................................ phylum Entoprocta [Chapter 14]
7(4) Not with the combination of characteristics described below ........................................................................................................................ 8
7’ Small (50–800 μm), spindle- or tenpin-shaped, ventrally flattened with a more or less distinct head bearing sensory cilia; cuticle usually
ornamented with spines or scales of various shapes; posterior of body often formed into a furca with distal adhesive tubes; gastrotrichs
(pseudocoelomates) ...................................................................................................................................... phylum Gastrotricha [Chapter 7]
8(7) Anterior mouth and posterior anus present ..................................................................................................................................................... 9
8’ Flattened or cylindrical, acoelomate worms with only one, ventral digestive tract opening; sometimes with evident head; turbellarian flat-
worms (commonly called planaria, a non-specific, and usually incorrect name) .................................. phylum Platyhelminthes [Chapter 5]
9(8) Vermiform or not, eversible oral proboscis not present, although eversible jaws or other mouthparts may occur ...................................... 10
9’ Long, flattened, unsegmented worms with an eversible proboscis; ribbon worms ......................................... phylum Nemertea [Chapter 6]
10(9) Body not enclosed in a single, spiraled shell or in a hinged, bivalved shell; or if a bivalved shell is present, then animal has jointed legs .......... 11
10’ Soft-bodied coelomates whose viscera is covered (in freshwater species) by a single or dual (hinged), hard calcareous shell; with a ventral
muscular foot; fleshy mantle covers internal organs; snails, clams, and mussels ........................................... phylum Mollusca [Chapter 11]
11(10) Segmented legs absent in all life stages; if jaws are present, then body with at least 20 segments .............................................................. 12
11’ Adults and most larval stages with legs; if larvae without legs or prolegs (some insects), then cephalic region with paired mandibles, or
eversible head, always with less than 15 body segments .............................................................................................................................. 14
12(11) Organism vermiform, not segmented ............................................................................................................................................................ 13
12’ Organism vermiform or not, body segmented ................................................................................................. phylum Annelida [Chapter 12]
13(12) Body cylindrical, usually tapering at both ends; cuticle without cilia, often with striations, punctuations, minute bristles, etc.; 1 cm long
(except family Mermithidae, <6 cm); nematodes, roundworms .......................................................................... phylum Nemata [Chapter 9]
4 Thorp and Covich’s Freshwater Invertebrates
INTRODUCTION

13’ Body with anterior tip normally obtusely rounded or blunt, posterior tip may be bi- or trilobed; cuticle opaque to dark brown or black, and
epicuticle usually crisscrossed by minute grooves; length several cm to 1 m, width 0.25–3 mm; only adults with free-living stage; hair-
worms or horsehair worms .................................................................................................................... phylum Nematomorpha [Chapter 10]
14(11) Four pairs of clawed, non-jointed legs; water bears ..................................................................................... phylum Tardigrada [Chapter 15]
14’ Adults and most larvae with jointed legs, or legs lacking, or more or less than four pairs.......................... phylum Arthropoda [Chapter 16]

REFERENCES Thorp, J.H. & D.C. Rogers (eds.). 2015. Ecology and General Biology.
Volume I of Thorp and Covich’s Freshwater Invertebrates, Fourth
Richards, A.B. & D.C. Rogers. 2011. Southwest Association of Freshwa- Edition. Academic Press, Elsevier, Boston, MA.
ter Invertebrate Taxonomists (SAFIT) list of freshwater macroinver-
tebrate taxa from California and adjacent states including standard
taxonomic effort levels. 266 pp.
Chapter 2

Protozoa
Alan Warren
Department of Life Sciences, Natural History Museum, London, UK

Genoveva F. Esteban
Bournemouth University, Faculty of Science and Technology, Dorset, UK

Bland J. Finlay

Protozoa
School of Biological and Chemical Sciences, Queen Mary University of London, The River Laboratory, Wareham, Dorset, UK

Chapter Outline
Introduction5 Material Preparation and Preservation 16
Limitations5 Isolation17
Terminology and Morphology 6 Cultivation18
Flagellates6 Preservation22
Amoebae9 Acknowledgments23
Heliozoans9 Keys to Protozoa 23
Ciliates10 References37

INTRODUCTION amoebozoans, opisthokonts, rhizarians, and excavates


(Cavalier-Smith, 2010; Adl et al., 2012). Protozoa typi-
During the last 20 years, studies on the systematics and evo- cally measure 5 to 1000 μm in size, and most are visible
lution of unicellular eukaryotes (algae, protozoa, and lower only with the aid of a microscope. There is considerable
fungi) have been in a state of great activity. Over this period, morphological and physiological diversity within the
many taxonomic boundaries, including those between the group. Because actively feeding protozoa need water,
algae and protozoa, have been broken down and new rela- all free-living (non-parasitic) protozoa are essentially
tionships established (Cavalier-Smith, 2010; Adl et al., aquatic, living in freshwater (including soil), brackish,
2012). As a result, the constituent organisms are grouped and marine environments.
together by some workers as protists, reviving the term orig-
inally coined by Haekel (1866), or as protoctists (Margulis
et al., 1989), although many systematists believe that such
LIMITATIONS
groups have no evolutionary or systematic validity. By con- There are a number of factors that pose significant limita-
trast, other workers have proposed systems that retain the tions to the taxonomy of protozoa. These include: (1) the
Kingdom Protozoa, albeit with much modified definitions lack of adequate methods for the fixation and long-term
and boundaries (Cavalier-Smith, 2010). Nevertheless, the preservation of specimens for much of the ca. 350-year his-
terms algae and protozoa are still useful in a functional or tory of the discipline of protozoology; (2) an absence of type
ecological sense, defining (primarily) photoautotrophic and specimens for most species; (3) a lack of sufficient morpho-
heterotrophic protists, respectively. logical features for species circumscription; (4) inadequate
Protozoa sensu lato, which means first animals, species descriptions for reliable identification; (5) high
are a diverse assemblage that comprises a number of rates of synonymy; (6) insufficient numbers of trained tax-
separate lineages representing almost all the major onomists; (7) undersampling and a large unknown species
eukaryote clades, including alveolates, stramenopiles, diversity; and (8) technical difficulties in culturing many

Thorp and Covich’s Freshwater Invertebrates. http://dx.doi.org/10.1016/B978-0-12-385028-7.00002-0


Copyright © 2016 Elsevier Inc. All rights reserved. 5
6 Thorp and Covich’s Freshwater Invertebrates

species, which is sometimes a prerequisite for adequate


characterization.
It is often difficult and time-consuming to identify pro-
tozoa to the level of species. In many cases, unambiguous
identification requires specialized staining techniques or the
use of electron microscopy. The taxonomic grouping used
in our key is an amalgamation of publications by special-
ists on the different groups (e.g., Lee et al., 2000; Lynn,
2008; Bass et al., 2009; Cavalier-Smith, 2010; Smirnov
et al., 2011; Adl et al., 2012). While the taxonomy of many
groups is based on a combination of cell morphology, ultra-
structural features, and molecular data, this key is designed
to make possible the identification of many protozoa to the
family level using light microscopy alone. Although obser-
vation of living organisms is important for identification,
the key should still be useful for many fixed samples. The
Protozoa

illustrations used as examples here are of one or more spe-


cies considered typical of a genus.
Although this key primarily deals with free-living pro-
tozoa, some ciliates that are commensal or parasitic, e.g.,
certain groups of suctorians and oligohymenophoreans, are
also included.

FIGURE 2.1 Examples of the main functional groups of protozoa.


TERMINOLOGY AND MORPHOLOGY (A) Peranema trichophorum—a flagellate; (B) Amoebae proteus—an
amoeba; (C) Actinophrys sol—a heliozoan; (D) Tetrahymena sp.—a ciliate.
Traditionally, free-living protozoa have been divided into
After Vickerman & Cox (1967) A, B; Siemensa (1991) C; Curds (1982) D.
three main groups according to their morphology and means
of locomotion: flagellates, amoebae (including heliozoans),
and ciliates (Fig. 2.1). Of these, only the ciliates are a truly Other groups of flagellates contain mostly or entirely
natural, monophyletic group, the flagellates and amoebae autotrophic forms with chloroplasts. However, many of the
being polyphyletic and include groups that may be only dis- pigmented, autotrophic taxa are also capable of phagot-
tantly related. Nevertheless, from a practical viewpoint, it rophy, producing an overall condition called mixotrophy
is still sometimes useful to refer to these groupings because (Sanders, 1991; Esteban et al., 2010), and also among these
isolation, cultivation, and identification methods used are groups are some wholly heterotrophic species. The groups
often the same within each group. with many mixotrophic or heterotrophic taxa include cryp-
tophytes, chrysophytes, dinoflagellates, and euglenoids,
and are usually considered phyla. Pigmentation and chlo-
Flagellates roplast morphology are important taxonomic characters for
Flagellates are characterized by the possession of one or some of these groups.
more flagella, which are long, tapering, hair-like append- Choanoflagellates, or collared flagellates, are dis-
ages that act as organelles of locomotion and feeding tinctive for the collar that surrounds the single flagellum
(Fig. 2.1 A). In free-living taxa, as opposed to parasitic spe- (Fig. 2.2 B–H). They bear a strong resemblance to sponge
cies, the number of flagella is limited; Paramastix has two choanocytes. Most choanoflagellates attach to the substrate
rows of 8–12 flagella, but most others have 1–4 (usually 2). or are colonial, and many have an external, loose-fitting
Typically, where two flagella are present, one may project covering or lorica, although this may be difficult to see with
forward, and the other trails behind. Often, the organism’s the light microscope.
flagella are longer than its body. There are several groups Bicoecids (Fig. 2.2 I) resemble choanoflagellates,
of heterotrophic flagellates in freshwater: choanoflagel- although they lack a collar. Like choanoflagellates, they are
lates, kinetoplastids, diplomonads, and bicoecids. These enclosed in a lorica and have a flagellum that is used to cre-
are raised to phyla by some authors, while bicoecids are ate a feeding current. A second flagellum lies along the cell
occasionally put with chrysophytes. Some amoeboid forms, and continues posteriorly to become an attachment to the
such as cercomonads and the Schizopyrenida, or amoebo- base of the lorica.
flagellates, also have flagella but are treated here with the Kinetoplastids (Fig. 2.2 J, N–P) are known mostly as
amoebae. parasites, especially Trypanosoma and its relatives,
Chapter | 2 Protozoa 7

(D)
(C)
(A)
(B)

(F)
(E)
(G)

Protozoa
(H)

(I)

(K)

(J)
(L)

(M)
(O)
(N)
(P)

FIGURE 2.2 (A) Uroglena americana (mixotrophic); (B) Desmarella moniliformis; (C, D) Sphaeroeca volvox, individual and colony; (E) Codosiga
botrys; (F) Diploeca plactita; (G) Salpingoeca fusiformis; (H) Monosiga ovata; (I) Bioeca lacustris; (J) Bodo caudatus; (K) Cercomonas sp.;
(L) Cephalomonas cyclopum; (M) Hexamita inflata; (N, O) Pleuromonas jaculans, attached and amoeboflagellate forms; (P) Rhynchomonas nasuta.
Scale 2.5 μm for P; 5 μm for F, G, H, I, K, L; 10 μm for A, B, C, J, M, N, O; 20 μm for E; and 30 μm for D. After: Bourelly (1968) L; Calaway & Lackey (1962)
N, O, P; Lackey (1959) B, F; Lee et al. (1985) K; Pascher (1913) C, D, E, G, H, I, J, M.

but many members of the suborder Bodina live in fresh- The pellicle is covered with plates, although these also are
water (Vickerman, 1976). The best-known genus is Bodo, not generally visible.
which, like other bodonids, has two flagella (Fig. 2.2 J) one The dinoflagellates (Fig. 2.3 A–C) form a very large
of which trails, while the other extends ahead. and unique group, which is probably more important
The cryptomonads include many common heterotrophs in marine than freshwater environments. Their unique
and autotrophs and a few mixotrophs. The two flagella are arrangement of flagella, one spiraling around the cell in
unequal in length and arise from a subapical invagination a groove (girdle) and a second distally directed in another
commonly referred to as a “gullet,” although it does not groove (sulcus), makes them distinctive. Again, heterot-
appear to be the site of ingestion in heterotrophic forms. rophy and mixotrophy are common. A covering of plates
8 Thorp and Covich’s Freshwater Invertebrates

(A) (B) (C)

(E) (F) (G)


(H)
Protozoa

(D)

(I)
(J)

(K)
(N)
(L) (M)

FIGURE 2.3 (A) Peridinium; (B) Gymnodinium; (C) Gyrodinium; (D) Khawkinea halli; (E) Polytomella citri; (F) Entosiphon sulca-
tum; (G) Petalomonas abcissa; (H) Peranema trichophorum; (I) Urceolus; (J) Chilomonas paramecium; (K) Paraphysomonas vestita;
(L) Spumella (Monas) vivipara, two cell shapes; (M) Ochromonas variabilisa; (N) Dinobryon sertularia (mixotrophic). Scale 5 μm for E; 10 μm for A, B,
C, G, I, J, K, L, M; and 20 μm for D, F, H, N. After: Bourelly (1968) L; Calaway & Lackey (1962) E, F, J, N; Eddy (1930) A; Jahn & McKibben (1937)
D; Leedale (1985) H; Pascher (1913) M; Lemmerman (1914) K; Shawhan & Jahn (1947) G; Smith (1950) I.

may or may not be present (hence the terms armored and in recognizing the members of this group. Chrysophytes con-
naked dinoflagellates). tain both colorless heterotrophs and pigmented mixotrophs.
Chrysophytes are generally small, and they prey on bac- Euglenids are generally large flagellates with two fla-
teria. They have two unequal flagella, one long and directed gella, although in many taxa, only one flagellum emerges
anteriorly, the other short and directed laterally (Fig. 2.3 K–M). from the gullet (Fig. 2.3 D). Several heterotrophic species
They are naked or covered in fine siliceous scales (Esteban creep over the substrate with the second flagellum trail-
et al., 2012), which are not always visible with light micros- ing and hidden beneath the cell (Fig. 2.3 F–H), as in some
copy; many are amoeboid. Their carbohydrate storage product, bodonids. The euglenids are currently assigned to the super-
chrysolaminarin, occurs in liquid globules and may be useful group Excavata (Adl et al., 2012).
Chapter | 2 Protozoa 9

(A) (B)

(C) (D) (E)

(I)
(H)
(G)
(F)

Protozoa
(J)

(K) (L)

(P)

(O)
(M) (N)

FIGURE 2.4 (A) Vahlkampfia avaria; (B) Naegleria; (C) Stachyamoeba lipophora; (D) Thecamoeba sphaeronucleolus; (E) Vanella miroides; (F) Amoeba pro-
teus; (G) Mayorella bigomma; (H) Vexillifera telemathalassa; (I) Hartmannella vermiformis; (J) Chaos illinoisense; (K) Saccamoeba lucens; (L) Trichamoeba
cloaca; (M) Echinamoeba exudans; (N) Acanthamoeba; (O) Filamoeba nolandi; (P) Hylodiscus rubicundus. Scale 10 μm for A, B, C, E, I, M; 15 μm for H,
N, O, P; 30 μm for D, G, K, L; 50 μm for F; and 100 μm for J. After: Bovee (1985) A, B, C, D, H, I, J, M, N, O, P; Kudo (1966) F; Page (1988) E, G, K, L, P.

Amoebae simultaneously, as in Amoeba (Figs. 2.1 B and 2.4 F), or


by moving as a single mass on a broad front (2.4 E, P),
The primary characteristic of amoebae is their possession
or as a cylinder (limax amoebae, Fig. 2.4 I, K, L). Not only
of pseudopodia, retractile processes that serve as organelles
do pseudopodia have characteristic shapes, but the tail end
of locomotion and feeding (Fig. 2.1 B). There is consider-
or uroid may be distinctive (Fig. 2.4 J, L), and the cell sur-
able diversity of structure in the amoebae, particularly in
face may be distinctly sculptured, as in Thecamoeba (Fig.
the character of any shell or skeletal material that may be
2.4 D). The classification of the naked, lobose amoebae was
present, and in the type of pseudopodium, for example,
recently revised by Smirnov et al. (2011).
broadly lobed, needle-like, or reticulate. Amoebae range
Other groups of amoebae, notably the testate amoebae,
in size from only a few micrometers to 2 mm in diameter.
possess shells (or tests) that may be proteinaceous, agglu-
Although many lack a fixed external morphology, the char-
tinate, siliceous or calcareous in composition (Figs. 2.5
acteristic morphologies shown by the various taxa are sur-
A–Q and 2.6 B–K). These are generally vase-shaped, with
prisingly distinctive, even if difficult to quantify (Fig. 2.4).
a single opening through which pseudopodia emerge. Many
By using also the number, size, and structure of organelles
are terrestrial, but benthic forms are common, and a few
and characteristics of tests (where present), identification is
are planktonic. Identification of testate amoebae is mainly
not as difficult for living specimens as might be imagined.
based on shell characters, i.e., size, shape, and composition.
The morphology of amoebae is plastic. Many adopt a stel-
late morphology if suspended in water, but few are truly
planktonic; rather, they live on surfaces or in sediments.
Heliozoans
In most, for example, Amoeba (Figs. 2.1 B and 2.4 F), the Heliozoans and pseudoheliozoans are roughly spheri-
cytoplasm is divided into an inner granular endoplasm and cal amoebae with many stiff projections called axopo-
an outer hyaline ectoplasm, or hyaloplasm, with a charac- dia radiating outward from the cell surface (Figs. 2.1 C,
teristic thickness and distribution around the cell. Loco- 2.7, and 2.8 D, E, I, J, L). The axopodia give heliozoans
motion may be achieved by extending many pseudopodia their characteristic sun-like appearance for which they
10 Thorp and Covich’s Freshwater Invertebrates

(D)
(C)
(B)
(A) (E)

(G) (H) (I)


(F)

(J) (K) (L) (M) (N)


Protozoa

(O) (Q)
(P)

(R)

(T)
(S) (W)

(U) (V)

FIGURE 2.5 (A) Cochliopodium bilimbosum; (B, C) Phryganella nidulus, side and oral views; (D) Pyxidicula operculata; (E) Plagiopyxis callida;
(F, G) Arcella vulgaris, side and dorsal views; (H, I) Penardochlamys arcelloides, side and oral views; (J, K) Difflugia corona, side and oral views;
(L, M) Hyalosphenia cuneata; (N) Lesquereusia spiralis; (O, P) Quadrulella symmetrica; (Q) Nebela collaris; (R) Penardia granulose; (S) Chlamydophrys
minor; (T, U) Lecythium hyalinum, dorsal and side views; (V) Pelomyxa palustris; (W) Pseudo difflugia gracilis. Scale 10 μm for C, D, R, S; 30 μm for
H, I, L, M, T, U, W; 45 μm for G, N, O, P; 60 μm for Q; 90 μm for B, E, F, J, K; and 500 μm for V. After: Bovee (1985) A, B, C, H, I, J, K, N, O, P, R, T, U;
Deflandre (1959) D, E, F, G, L, M, Q, S, W; Kudo (1966) V.

are named, and are variously used for capturing food, near the benthos. Some heliozoans traverse the bottom
sensation, movement, and attachment. Axopodia are with a unique tumbling motion, resulting from controlled
strengthened by a microtubular array called an axoneme changes in the length of the axopodia. Many sessile forms
or stereoplasm. The term axoneme is also used to describe with stalks are known. In sessile forms, cell division is
the microtubular core of cilia and flagella, but this does likely to be unequal, producing a dispersal stage that may
not imply homology, and the origin and ultrastructure of be flagellated or amoeboid.
axonemes is diverse (Yabuki et al., 2012). Most helio-
zoans lack the skeleton that is so characteristic of their
Ciliates
marine counterparts such as Radiolaria and Acantharia,
although some are covered in siliceous or organic scales The ciliates (phylum Ciliophora) form a natural group dis-
(Fig. 2.7 F, H), and some have a perforated shell or capsule tinguishable from other protozoa by a number of special-
(order Desmothoracida, Fig. 2.7 A). Although heliozoans ized features, including the possession of cilia, which are
are frequently planktonic, they are found primarily on or short hair-like processes, at some stage in their life cycle,
Chapter | 2 Protozoa 11

FIGURE 2.6 (A) Vampyrella lateritia;


(B) Paraeuglypha reticulata; (C) Euglypha
tuberculata; (D, E) Trinema enchelys, oral
and side views; (F) Sphenoderia lenta;
(G, H) Cyphoderia ampulla; (I, J) Campascus
(A) (B) (C) (D) (E) (F) triqueter; (K) Paulinella chromatophora;
(L) Diplophyrys archeri; (M) Liekerkuehnia
wagnerella; (N) Microcometes paludosa;
(O) Microgromia haeckeliana; (P) Biomyxa
vegans; (Q) Chlamydomyxa montana;
(R) Reticulomyxa filosa. Scale 10 μm for L, N,
O; 15 μm for K; 25 μm for A, B, C; 40 μm for
(K) D, E, F, G, H; 50 μm for I, J, M, Q; 80 μm for
P; and 10,000 μm for R. After: Bovee (1985)
(G) (H) (I) (J) B, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R;
Deflandre (1959) A, C.

Protozoa
(L) (M)

(O)

(N)

(R)

(P) (Q)

FIGURE 2.7 (A) Clathrulina elegans;


(B) (C) (B) Actinophrys sol; (C) Actinosphaerium
eichhorni; (D) Heterophrys myriopoda;
(E) Ciliophrys infusorium; (F) Acanthocystis turfa-
cea; (G) Lithocolla globosa; (H) Raphidiophrys
elegans. Scale 15 μm for E; 30 μm for B, D, G;
50 μm for A; 75 μm for F, H; and 160 μm for C.
After: Deflandre (1959) H; Kudo (1966) B, C,
D, E; Rainer (1968) A, F, G.
(A)
(D)
(E)

(F)

(H)
(G)
12 Thorp and Covich’s Freshwater Invertebrates
Protozoa

FIGURE 2.8 (A) Amphitrema stenostoma; (B) Microchlamys patella; (C, I) Pinaciophora fluviatilis; (D) Rabdiophrys anulifera; (E) Rabdiaster
pertzovi; (F) Heliomorpha depressa; (G) Limnofila mynlikovi; (H) Clathrella foreli; (I) Pinaciophora fluviatilis; (J) Acanthoperla ludibunda; (K)
Acinetactis mirabilis; (L) Pompholyxophrys punicea. Scale = 200 μm C, I; 100 μm D; 50 μm A, B, G, H, J, K, L; 25 μm E, F. After Greef (1869) I;
Lemmermann (1914) K; Mikrjukov (1999) J; Mikrjukov (2001) E; Mikrjukov & Mylnikov (1995) (called Penardia cometa) G; Penard (1902) A, B;
Penard (1905) H; Rainer (1968) C, D; Schoutenden (1907) F; Siemensma (1991) L.

the presence of two types of nuclei, and a unique form of mixotrophic due to the presence of endosymbiotic algae,
sexual reproduction called conjugation. A representative or by sequestering chloroplasts from ingested algae that
ciliate is shown in Fig. 2.1 D. The body surface is covered are kept functional in the ciliate cytoplasm (Esteban et al.,
with cilia, which are mostly aligned in rows called kine- 2010).
ties. The pattern of kineties is interrupted in the region of The ciliates are divisible into 12 classes (Adl et al.,
the mouth where there may be specialized oral cilia used 2012). Members of the class Karyorelictea are thought
for feeding. The cilia may be reduced in number, espe- primitive for the group, with numerous non-dividing mac-
cially in sessile forms, or organized into larger compound ronuclei that are not highly polyploid. They are largely
ciliary organelles, such as cirri. The only large group that benthic, the best-known freshwater example being Loxodes
does not always possess cilia is the Suctoria; these are (Fig. 2.9 J). Compound ciliary organelles associated with
sessile predators whose dispersal stages are, however, the cytostome are prominent in the classes Heterotrichea
ciliated. This distinctive group is easily recognized by its and Spirotrichea. Large heterotrichs, such as Stentor and
feeding tentacles. The novice should take care not to con- Spirostomum (Fig. 2.10 A–F), are familiar as teaching mate-
fuse small, ciliated animals with ciliates; the size range of rial. Spirotrichs are abundant in many freshwater habitats,
ciliates overlaps that of several metazoan groups, such as from plankton (choreotrichs and oligotrichs, Fig. 2.11 S–W)
turbellarians, rotifers, and gastrotrichs. Some ciliates are to the benthos (e.g., many stichotrichs and hypotrichs).
Chapter | 2 Protozoa 13

(D) (E)

(C)

(A) (B)

(F) (G) (H) (I) (J)

(K)

Protozoa
(M) (O)
(N)

(P)
(Q)
(L)

(R) (S) (T)

(U)

(V)
(W) (X)

FIGURE 2.9 (A) Prorodon teres; (B) Pseudoprorodon ellipticus; (C) Holophyra simplex; (D) Trachelius ovum; (E) Paradileptus robustus;
(F) Amphileptus claparedi; (G) Litonotus fascicola; (H) Dileptus anser; (I) Loxophyllum helus; (J) Loxodes magnus; (K) Cyrtolophosis mucicola; (L, M,
N) Philasterides armata, live, silver-stained, and oral detail of silver-stained specimen; (O) Loxocephalus plagius; (P) Urozona bütschlii; (Q) Balanonema
biceps; (R) Pleuronema coronatum; (S) Histiobalantium natans; (T) Cohnilembus pusillus; (U) Uronema griseolum; (V) Cinetochilum margaritaceum;
(W) Cyclidum glaucoma; (X) Calyptotricha pleuronemodies. Scale 10 μm for K, Q; 15 μm for P, V; 20 μm for T, U, W, X; 25 μm for G, H, L, M; 30 μm
for C, I, S; 40 μm for B, R; 50 μm for F; 60 μm for A, O; and 75 μm for D, E, J. After: Corliss (1979) R; Dragesco (1966a) I; Grolière (1980) M, N; Kahl
(1930–1935) A, B, C, F, G, J, K, O, P, Q, S, V, W, X; Kudo (1966) I; Noland (1959) L, T, U.

Stichotrichs and hypotrichs (Figs. 2.11 A–H, N–Q; and established on the basis of small subunit (SSU) rRNA gene
2.12 X, Y) are mostly dorsoventrally flattened crawlers sequence data. Armophoreans are found only in anoxic hab-
with compound ciliary structures called cirri. itats, benthic, pelagic, or as endosymbionts in the digestive
The Nassophorea are named for their basket-like nasse or systems, mainly of invertebrates. Armophoreans are free-
cyrtos supporting the cytopharynx (Fig. 2.12 V, W, Z). The swimming, typically small to medium-size, with multiple
armophoreans were formerly placed in the Heterotrichea adoral polykinetids and a somatic ciliature that is typically
but are now recognized as a separate class, Armophorea, holotrichous but sometimes reduced (Fig. 2.11 K, R).
14 Thorp and Covich’s Freshwater Invertebrates

(B) (C) (D) (E)

(A) (G) (H) (I) (J)


(F)
Protozoa

(O)
(L) (N)
(K)

(M)

(T) (U)
(S)

(P)

(Q) (R) (V) (W)

FIGURE 2.10 (A) Spirostomum minus; (B) Blepharisma lateritium; (C) Bursaria truncatella; (D) Climacostomum virens; (E) Condylostoma tardum;
(F) Stentor polymorphus, half extended; (G) Actinobolina radians; (H) Coleps hirtus; (I) Bryophyllum lieberkühni; (J) Metacystis recurva; (K) Lacrymaria
olor; (L) Askenasia volvox; (M) Urotricha farcta; (N) Mesodinium pulex; (O) Vasicola ciliata; (P) Trachelophyllum apiculatum; (Q) Enchelyodon ele-
gans; (R) Homalozoon vermiculare; (S) Enchelys simplex; (T) Chaenea teres; (U) Spathidium spathula; (V, W) Didinium nasutum, live and silver-stained.
Scale 10 μm for M, N; 20 μm for H, J, L, P, S; 30 μm for G, O, U; 40 μm for B, K, T; 60 μm for E, Q, R; 80 μm for D, V, W; 100 μm for A, F, I; and 200 μm
for C. After: Dragesco (1966a) K, S, V, W; Dragesco (1966b) P, R; Kahl (1930–1935) A, B, D, E, F, G, H, I, J, L, M, N, O, Q, T, U; Kent (1882) C.

Classes Prostomatea (Fig. 2.10 J, O) and Litostomatea the cytostome, on a proboscis, on tentacles, or elsewhere on
(Figs. 2.9 D, E, H; and 2.13 J, M) are largely predators, the body. A number of short, specialized kineties (rows of
often of other ciliates. Prostomes generally have apical cyto- kinetosomes) are often found near the anterior. This brosse
stomes, while many litostomes have subapical, sometimes (brush) probably assists in prey recognition.
slit-like cytostomes. The mouth is encircled by a crown of Class Phyllopharyngea contains the distinctive Suctoria
cilia from whose bases (kinetosomes) arise the rhabdos, (Figs. 2.13 B, F, I; 2.14; 2.15 A–C; and 2.16 B, C, J, L), ses-
a cylinder of microtubules surrounding and supporting the sile or free-floating predators of other ciliates. Suctoria are
cytopharynx. Toxicysts are found in most species and are unusual in that most have several “sticky” feeding tentacles
used to subdue active prey. Toxicysts may be found around rather than a single mouth. Suctoria reproduce by unequal
Chapter | 2 Protozoa 15

(D) (E) (F)

(B) (C)
(A) (G) (H)
(K)

(J)
(Q)
(P)

(N)
(M) (O)

Protozoa
(I)
(L)
(W)
(U)

(R) (S) (T) (V)


(X)

FIGURE 2.11 (A) Gastrostyla steini; (B) Uroleptus piscis; (C) Oxytricha fallax; (D) Urostyla grandis (dorsal view); (E) Stylonychia mytilus
(dorsal view); (F) Gonostomum affine; (G) Tetrastyla oblonga(called Amphisiella oblonga); (H) Stichotricha aculeata; (I) Hypotrichidium conicum; (J)
Discomorphella pectinata; (K) Metopus es; (L) Myelostoma flagellatum; (M) Saprodinium dentatum; (N,O) Chaetospira mülleri, contracted and extended
forms; (P) Strongylidium crassum; (Q) Psilotricha acuminata; (R) Caenomorpha medusula; (S) Tintinnidium fluviatile; (T) Tintinnopsis cylindricum; (U)
Strombidinopsis setigera; (V) Strombidium viride; (W) Halteria grandinella; (X) Strobilidium gyrans. Scale 15 μm for L; 25 μm for H, W, X; 30 μm for F,
I, J, P, Q, R, T; 40 μm for A, G, K, M, N, O, S, U, V; 60 μm for B; 80 μm for C, E; and 140 μm for D. After: Jankowski (1964a,b) J, M; Kahl (1930–1935)
F, G, H, I, K, L, N, O, P, Q, R, V, W, X; Kent (1882) A, B, C, D, E; Noland (1959) S, T, U.

binary fission (budding), which yields a ciliated dispersal sequence data, has been characterized, based on which the
stage or “swarmer.” Other groups within the Phyllopha- class Cariacotrichea was established (Orsi et al., 2011).
ryngea include the Cyrtophoria, which contains surface-­ Members of the Oligohymenophorea are mostly
associated algivores such as Chilodonella (Fig. 2.17 T), plus microphagous, and this class is named for the compound
a diverse array of epizooic and free-living forms such as cho- ciliary organelles that are found in a buccal cavity sur-
notrichians and rhynchodians (Gong et al., 2009). rounding the cytostome. The most common pattern (in
Colpodeans (Figs. 2.16 F, G, M; 2.17 K, L, N, P, S; and 2.18 subclasses Hymenostomatia, Scuticociliatia, and Penicu-
G) are not common in freshwater environments, most being lia; Figs. 2.9 L–X; 2.15 H, I; and 2.17 A–J) is three
terrestrial bacterivores. They are more likely to be encountered polykinetids on the left side of the buccal cavity and an
in small, temporary waters. Plagiopylea is a riboclass whose undulating membrane on the right. The net result is three
monophyly, like the class Armophorea, is based only on the brushes, the polykinetids, working against a curved wall,
evidence of sequences of the SSU rRNA gene. Also like the the undulating membrane, to deliver small particles to the
armophoreans, plagiopyleans are considered to be anaerobic cytostome. The large subclass Peritrichia (Figs. 2.12 A–U,
or microaerophilic and include groups not formerly thought to 2.13 H, and 2.18 I) contains sessile bacterivores in which
be phylogenetically related, e.g., the “classic” plagyopyleans the buccal cavity is deepened as an infundibulum, and the
(Fig. 2.17 M), which were formerly placed in the Colpodea polykinetids wind down it to the cytostome after encir-
and resemble colpodids in form, and the odontostomes (Fig. cling a prominent peristome. Somatic ciliature is absent
2.11 J, M). Recently, another anoxic ciliate lineage, which in most species. Many are attached to the substrate
was initially known only from marine environmental rRNA by a stalk, as in the common Vorticella (Fig. 2.12 K),
16 Thorp and Covich’s Freshwater Invertebrates

(C)

(G)
(E)
(A) (B)
(F)

(D) (N)
(L)
(I) (J) (K)

(H)
(M)
Protozoa

(W)

(O)

(R) (V)

(S)
(T) (U)
(P) (Y)
(Q)

(X) (Z)

FIGURE 2.12 (A) Hastatella radians; (B) Astylozoon faurei; (C) Urceolaria mitra; (D) Trichodina pediculis; (E) Scyphidia physarum; (F) Cothurnia
imberbis; (G) Vaginicola ingenita; (H, I) Zoothamnium arbuscula, individual and colony; (J) Ophrydium eichhorni; (K) Vorticella campanula; (L) Pyxicola
affinis; (M) Platycola decumbens (called Platycola longicollis); (N) Thuricola folliculata; (O) Epistylis plicatilis; (P) Rhabdostyla pyriformis; (Q, R)
Carchesium polypinum, individual and colony; (S) Opercularia nutans; (T, U) Campanella umbellaria, individual and colony; (V) Pseudomicrothorax
agilis; (W) Microthorax pusillus; (X) Aspidisca costata; (Y) Euplotes patella; (Z) Nassula ornata. Scale 15 μm for V, W; 20 μm for A, B, G, P; 25 μm for
D, E, H, F, X; 30 μm for C, Z; 40 μm for L, M, S, Y; 50 μm for O; 75 μm for K, N, Q, U; and 200 μm for I, J. After: Corliss (1979) V, Y; Kahl (1930–1935)
A, B, C, D, E, H, L, N, Q, R, T, U, W; Kent (1882) I, J, K, O, S, X; Noland (1959) F, G, M, P.

and a few are secondarily free-swimming. Peritrichs may Likewise, it is optimal that suitable temperature, light, and
be either solitary or colonial. oxygen tension regimes should also be maintained through-
out the isolation and culturing processes. Numerous meth-
ods for the isolation and cultivation of protozoa have been
MATERIAL PREPARATION
reported, and these have been reviewed or summarized on a
AND PRESERVATION number of occasions (Finlay et al., 1988; Kirsop & Doyle,
To identify certain species of protozoa, it may be necessary 1991; Nerad, 1993; Lee & Soldo, 1992; Tompkins et al.,
to cultivate them. This involves isolating them from other 1995; Day et al, 2007).
(contaminant) organisms and then growing them in a cul- Methods to collect protozoa are described in Volume I’s
ture medium. In general, all initial manipulations and trans- chapter on protozoa, but below we describe more detailed
fers should be performed where possible in media with pH methods for isolating, culturing, and preserving selected
and osmotic potential similar to those at the site of isolation. groups.
Chapter | 2 Protozoa 17

Protozoa
FIGURE 2.13 (A) Gastronauta sp; (B) Paracineta patula; (C) Metacineta micraster var. pentagonalis (called M. pentagonalis in Nozawa 1939);
(D) Choanophrya infundibulifera; (E) Solenophrya micraster; (F) Prodiscophrya collini; (G) Bryometopus pseudochilodon; (H) Usconophrys aperta;
(I) Endosphaera engelmanni in cytoplasm of Opisthonecta henneguyi; (J) Apertospathula armata; (K) Apsikrata gracilis; (L) Lecanophryella paraleptas-
taci; (M) Lagynophrya fusidens; (N) Trachelostyla ciliophorum; (O) Wallackia schiffmanni. Scale = 200 μm C, I; 100 μm B, E, O; 50 μm A, G, H, J, K,
L, M, N; 25 μm D, F. After Clamp (1991) H; Curds (1982) A, B, C, D, E, F, M; Curds et al. (1983) G, N, O; Dovgal (1985) L; Foissner & Xu (2006) J;
Foissner (1984) K; Matthes (1971) I.

wheat or rice, which will promote the growth of bacteria and


Isolation thereby produce a food source for the protozoa. Some com-
There is a wide variety of methods of isolation, and these can monly used enrichment methods are described in Finlay et al.
broadly be classified into three categories: enrichment meth- (1988) and Lee & Soldo (1992). The development of bacteri-
ods, dilution methods, and physical methods. Enrichment is the vores may also encourage the growth of carnivorous protozoa
inoculation of a field sample into an equal or greater volume that will feed upon them. Dilution methods are most effective
of suitable medium and incubation under favorable conditions. for use on preponderantly uniprotozoan samples. Material is
By inoculation of parallel cultures in a range of media, differ- sequentially diluted in an appropriate medium and incubated
ent organisms will be selected. For bacterivorous protozoa, the under favorable conditions. The greatest dilution in which
simplest way to enrich a sample is to add boiled grains of barley, growth occurs is likely to be uniprotozoan and usually isolates
18 Thorp and Covich’s Freshwater Invertebrates

(A)
(B)

(D)
(E) (F)
(C)

(H) (I) (J)

(G)
Protozoa

(M) (N)

(K)
(P)

(L)
(O)

FIGURE 2.14 (A) Thecacineta cothurniodes; (B, C) Metacineta mystacina, top and side views; (D) Paracineta crenata; (E) Podophrya fixa, show-
ing trophont, encysted form, and swarmer; (F) Acineta limnetis; (G) Sphaerophyra magna; (H) Trichophyra epsitylidis; (I) Dendrocometes paradoxus;
(J) Heliophrya reideri; (K) Tokophrya quadripartita; (L) Multifasciculatum elegans; (M) Squalorophyra macrostyla; (N) Discophrya elongata; (O) Stylocometes
digitalis; (P) Dendrosoma radians. Scale 15 μm for E, H, J, O; 30 μm for A, D, F, G; 50 μm for I, L, M, N; 75 μm for B, K, 150 μm for C; and 2000 μm for P.
After: Corliss (1979) P; Goodrich & Jahn (1943) F, K, L, M; Kent (1882) G, I; Matthes (1954) J, O; Noland (1959) A, B, C, D, N; Small and Lynn (2000) E, H.

the most abundant species in a sample. Details of various on discerning colony growth of isolated clones on agar sur-
dilution methods are described in Cowling (1991) and Finlay faces or within agar, and are particularly useful for amoebae
et al. (2000). Once isolated, it may be important to reduce the and some flagellates. Usually one or two drops of sample are
volume of liquid in which the cell is contained, thereby initiat- placed onto a non-nutrient agar plate that has been streaked
ing a quorum-sensing mechanism. Physical methods involve with a suitable food organism, and then incubated. Amoebae
the selection of individual protozoan cells and their transfer into then migrate across the agar surface away from site of inocula-
a growth medium. Micropipetting with thin capillary pipettes, tion, thereby isolating themselves from other organisms in the
working under a dissecting microscope, can be used for a wide sample. The amoebae may then be picked off and subcultured
variety of protozoa, particularly those that are relatively large (Lee & Soldo, 1992; Day et al., 2007). Electromigration is a
and/or slow. Other methods of isolation include silicone oil method for obtaining concentrated suspensions of ciliated and
plating, flow cytometry, agar plating, and electromigration. flagellated protozoa relatively free of bacteria and other organ-
Silicone oil plating involves the isolation of clone-founding isms. It works on the principle that many ciliates and flagel-
cells within microdroplets formed from vortex-mixed oil/cul- lates orient themselves in a direct current and migrate toward
ture emulsions (Soldo & Brickson, 1980). Flow cytometry is the cathode (Schmidt, 1982). It is particularly useful for the
an automated means of discriminatory cell sorting and isola- isolation of organisms from mud and sediment samples.
tion on the basis of various cell attributes including size and
density. It is particularly useful for cells that contain pigments
Cultivation
that give a fluorescent signal and has also been applied suc-
cessfully to isolate protozoa using their fluorescent food vacu- To maintain cultures of protozoa long term, it is necessary
ole contents (Keenan et al., 1978). Agar plating methods rely to provide a medium that suits each species and a supply of
Another random document with
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“Where are you going, Robin Redbreast?”

Then off flew the wee, wee Robin until he came to a wall of turf
and there he saw a greedy Hawk sitting and watching to see what
small birds passed by. And the greedy Hawk called to him and said,
“Where are you going, Robin Redbreast, this frosty Yuletide
weather?”
Then the wee, wee Robin said to the Hawk, “I am going to the
King to sing him a song this good Yule morning.”
And the greedy Hawk replied, “Go not yet. Come here, Robin
Redbreast, and I’ll let you see a bonny green feather that I wear in
my wing.”
But the wee, wee Robin said, “No, no, greedy Hawk. You have
pecked all the tiny birds but you’ll not peck me.”
Then off flew the wee, wee Robin until he came to a hollow in the
hillside and there he saw a sly Fox sitting. The sly Fox saw Robin
and called to him, “Where are you going, Robin Redbreast, this
frosty Yuletide weather?”
Then the wee, wee Robin said to the Fox, “I am going to the King
to sing him a song this good Yule morning.”
And the sly Fox replied, “Go not yet. Come here, Robin Redbreast,
and I will show you a bonny spot on the tip of my tail.”
But the wee, wee Robin said, “No, no, sly Fox. You may show the
bonny spot on the tip of your tail to the lambs but not to me.”
Then off flew the wee, wee Robin until he came to a little shepherd
Lad sitting beside his cot. The little shepherd Lad saw Robin and
called to him, “Where are you going, Robin Redbreast, this frosty
Yuletide weather?”
Then the wee, wee Robin said to the shepherd Lad, “I am going to
the King to sing him a song this good Yule morning.”
And the shepherd Lad replied, “Go not yet. Come here and I will
give you some crumbs from my pouch.”
But the wee, wee Robin said, “No, no, little shepherd Lad. You
caught the goldfinch but you’ll not catch me.”
Then off flew the wee, wee Robin until he came to the King, and
he sat down upon a plowshare just outside of the King’s window, and
he sang him a pretty song because it was such a good Yule morning.
The King was very much pleased indeed and he said to the Queen,
“What shall we give the wee, wee Robin Redbreast for singing us
such a pretty song?”
The Queen thought and thought and at last she decided. “I think
we will give the wee, wee Robin Redbreast a wee Wren to be his
wife,” the Queen said to the King.
So the wee, wee Robin Redbreast and the wee Wren were
married and the King, and the Queen, and all the court, and the
whole countryside danced at their wedding. And after the wedding
the two flew home to the Robin’s own waterside.
THE STORY OF
IBBITY.

Once upon a time there was a little brown boy named Ibbity. He
lived in a warm country where there are jungles and tigers and sandy
deserts. Now Ibbity was always wondering about things, and one
day he said to his mother:
“I wonder, oh, I do wonder what is the strongest thing in the world.”
But his mother could not tell him, so Ibbity started off by himself to
find out.
He went a long, long way, and at last he came to a tree. Up the
tree climbed Ibbity and looked abroad over the jungle and the desert
for something very big and strong. But just then the top of the tree
broke. Bump, down fell little Ibbity to the ground.
“Oh, Tree, you are the strongest thing, are you not?” cried Ibbity,
sitting up and rubbing his head. “You are able to throw Ibbity to the
ground.”
“No, I am not as strong as the wind,” sighed the tree, “it was the
wind that broke my branch.”
Then Ibbity ran far away to the place where the wind was blowing
the sand in the desert, and he said:
“Oh, Wind, the tree threw Ibbity, but you broke the tree. Are you
not the strongest one?”
“No, I am not the strongest one,” said the wind, “the hill is able to
stop my blowing.”
So Ibbity ran on and on, until he came to a high hill, and to the hill
he said:
“Oh, Hill, the tree threw Ibbity, and the wind broke the tree, but you
are able to stop the wind. Are you not the strongest one?”
“Not I,” said the hill. “At my feet lives a small mouse. She is cutting
a tunnel straight through me.”
So Ibbity went down the hill, and looked around in the bushes until
he found a small brown mouse. To the mouse he said:
“O Mouse, the tree threw Ibbity, the wind broke the tree, and the
hill can stop the wind, but you have dug a tunnel through the hill. Are
you not the strongest one?”
“No,” said the mouse. “Cannot the tiger catch me?”
So Ibbity traveled to the jungle, where the tiger lives, and he said:
“Oh, Tiger, the tree threw Ibbity, the wind broke the tree, the hill is
able to stop the wind, and the mouse has dug a tunnel through the
hill, but you can catch the mouse. Are you not the strongest one?”
But the tiger was caught fast in a net, and he said to Ibbity:
“No, this rope is stronger than I.”
And Ibbity said to the rope:
“Oh, Rope, the tree threw Ibbity, the wind broke the tree, the hill
can stop the wind, the mouse has dug a tunnel under the hill, the
tiger is able to catch the mouse, but you have caught the tiger. Are
you not the strongest one?”
“No,” said the rope, “for the fire burns me.”
So Ibbity ran and ran until he came to a fire, and to the fire he
said:
“Oh, Fire, the tree threw Ibbity, the wind broke the tree, the hill
stops the wind, the mouse tunnels the hill, the tiger catches the
mouse, the rope catches the tiger, but you are able to burn the rope.
Are you not the strongest one?”
“No,” said the fire, “my heat is less than that of the great sun.”
Then Ibbity looked up at the sky, and he called loudly to the sun:
“Oh, great Sun, the tree threw Ibbity, the wind broke the tree, the
hill stops the wind, the mouse tunnels the hill, the tiger catches the
mouse, the rope catches the tiger, the fire burns the rope, but your
heat is greater than that of the fire. Are you not the strongest one?”
Then the sun winked its large yellow eye at Ibbity, and never a
word did it say, for it was too far off to hear Ibbity’s little voice.
So Ibbity clapped his hands and cried, “I have found the strongest
one. It is the sun.”
And little Ibbity went home again to tell his mother.
THE CHIPMUNK
WHO CHATTERED
TOO MUCH.

Once upon a time, when Indians and animals lived together in the
same forest and animals could speak, the Chipmunk was the
greatest talker of them all.
He lived in a lodge in the middle of the woods with his grandfather
who was very old and wise as well. But the Chipmunk was young,
and very daring. He was able to run so fast and climb trees, and
jump from one branch to another that he thought nothing in the world
could harm him. He had a louder voice then than he has now. He
chattered all day long, boasting about himself. At last he became
very tiresome to the other animals.
They came at last and spoke to the Chipmunk’s grandfather about
him.
“Your grandson chatters so loudly,” scolded the Blue Jay, “that the
birds are not able to hear me when I warn them of danger in the
forest.”
And the Frog came to the Chipmunk’s grandfather with tears in his
eyes. “Your grandson chatters so loudly,” croaked the Frog, “that no
one can hear me when I sing on the edge of the stream in the
evening.”
It was quite true. The Chipmunk talked and boasted all the time.
He chattered as he started out from his lodge in the morning and all
the way down the path to let every one know that he was on his way.
He chattered when he came to a nut tree and when he picked up
some nuts. He had pockets in his cheeks, so he could chatter even
when he came home with a mouthful of nuts. There seemed to be no
way of keeping this young Chipmunk quiet, and at last his
grandfather decided to speak to him about it.
“You are not using your voice as it was meant that you should, my
son,” said the Chipmunk’s grandfather. “All the creatures in feathers
and fur in the forest speak for a reason. The Ground Hog whistles to
call his young, and the Frog croaks when wild beasts creep toward
the lodges, and the Robin sings of rain. But you, my son, chatter for
no reason except your foolish pride. Beware! the Great Chief will
hear you and catch you some day if you do not stop!”
The Chipmunk thought that night of what his grandfather had said.
But when morning came, he forgot all about it and took his noisy way
through the woods again. He made just as much noise as he could,
even after he had reached a hickory-nut tree, and climbed up among
the branches.
Suddenly, though, he was still. He heard the leaves on the ground
rustle and the twigs crackle with heavy footsteps. Peering down
between the branches, the Chipmunk saw the Great Chief of whom
his grandfather had warned him. He looked as tall as a young tree
and as dark as a thunder cloud. He carried a long bow and a quiver
of arrows. He had come for the Chipmunk, and he waited under the
tree, looking up among the branches to see when he should come
down.
But the leaves on the branches hid the Chipmunk. He gathered a
handful of nuts and tossed them down. The Great Chief was thrown
off his guard by the trick. He jumped, thinking it was the Chipmunk,
but the little fellow scampered down the other side of the tree. He got
home to his lodge in safety.
The next day the Chipmunk was even more noisy than ever as he
started out. He reached a tree, climbed up in it, and again the Great
Chief came with his bow and arrows to kill the chattering little pest.
But the Chipmunk gathered a handful of twigs which he threw down
at the feet of the Great Chief.
“Here I come,” the Chipmunk chattered. As the Great Chief
watched to see him follow the twigs he dropped down on the other
side of the tree and once more reached home safe.
When the Chipmunk started out the third morning he had a great
piece of news to tell the whole world. He told it just as loudly as he
could.
“The Great Chief can’t catch me. He can’t catch me,” boasted the
Chipmunk.
He kept on chattering this after he had scampered up a tree, and a
very bold plan entered his head.
The Great Chief came at last. He strode angrily until he came to
the tree where the Chipmunk sat looking down at him.
“Come down! Come down from this tree!” called the Great Chief in
a loud voice.
That was just what the Chipmunk planned to do. He was going to
come down and dare the Great Chief to catch him. He felt that he
would be safe in doing this. So the Chipmunk came down and stood
a second, chattering to the Great Chief, who was so surprised that
he did not move at first.
Then the Chipmunk ran and the Great Chief ran after him. It was a
race for life, the Chipmunk soon found out, for the Great Chief
gained at every step. The Chipmunk leaped and jumped, and panted
for breath. On, and on they went, in and out among the trees. The
Chipmunk lost his loud voice in fear and no other member of the
family has had such a loud one since that day. He could see his
lodge with his grandfather waiting for him in the door, but it did not
seem possible that he could reach it.
Oh, there he was at the door; but just as he went inside the Great
Chief took hold of the Chipmunk with his strong fingers. Although the
Chipmunk pulled himself loose, he had a row of long white stripes on
his back where the Great Chief had clutched him.
And every other Chipmunk, since then, has had white stripes on
his back, because of the first Chipmunk who chattered too much.
HOW THE SQUIRREL
GOT WINGS.

Once upon a time the Indians tell us that the Manito was the good
spirit of the woods. He taught every wild creature, bird, beast, or fish
its own special work. It was then that the Beaver learned how to be a
mason, and the Oriole to be a weaver. The Mole learned how to dig
long, secret tunnels although he was blind. The Spider was taught to
spin and the Bee to make honey.
Then, too, the Manito made the Squirrel the little harvester of the
woods, gathering nuts in the fall and digging holes in the earth in
which to bury them for the winter. It was planned that the Squirrel
should be an example to man of the wisdom of working while others
feasted. He gathered food for the days when the wind would howl
and the snow drift about his lodge. So the Squirrel spent his days
looking for nuts and laying them away for cold weather. With him
went his friend, the Woodchuck.
In those days, the Woodchuck ate nuts, and as his legs were short
and his feet flat he could not climb trees. His feet were shaped like
shovels. He used them for digging himself a little house in the side of
a hill where he planned to sleep through the winter until spring
should come. But he was very fond of nuts. His friend, the Squirrel,
was good enough to take him about the woods and show him the
places where nuts were scattered on the ground. The Squirrel gave
him half of all the nuts there were. The Woodchuck cracked these
with his sharp teeth and ate them all.
The Manito was apt to walk through the forest at night to see if
everything was safe. He wished, too, to see if his little wild children
had done their work during the day. One evening in the late fall the
Manito went through the forest in the form of a night wind. He looked
in the door of the Woodchuck’s house in the side of the hill. It was
empty!
Taking his way through the trees the Manito saw a little creature in
a gray fur blanket creeping softly along from one spot to another. He
had short legs, and feet shaped like shovels. It was the Woodchuck.
As he came to a place for which he had been looking, the
Woodchuck would dig deep down in the earth with his paws. He
would bring up a store of nuts and carry them back to his hole in the
side of the hill.
“This is not as it should be,” the Manito thought. “I did not plan that
my son, the Woodchuck, should harvest at night. Nor did I decree
that he should gather nuts.”
Then it came to the mind of the Manito what the Woodchuck was
up to!
The next night the Manito had a council fire in the woods and bade
all the wild creatures to come to it. He, himself, dressed in fine
blankets and feathers like an Indian Chief, sat on a rock before the
fire. All his sons, the Squirrel, the Beaver, the Wolf, the Deer, the
Otter, the Fox, and the rest, sat in a circle around the fire. There was
one vacant place, though. The Woodchuck had not yet come.
At the time for the council to open, the Manito stood up and spoke.
“We are gathered here as a court of law,” he said. “I have learned
that my thrifty son, the Squirrel, has been the victim of a thief. He
has been busy and saving, as I have taught him to be. He has done
his harvesting for the winter. But while he slept a friend robbed him
of his nuts. What shall we do to such a false friend?”
“Drown him!” said the Beaver.
“Starve him!” said the Otter.
“Eat him!” barked the Fox and the Wolf.
“Who is he?” asked the gentle Deer.
Just then the Woodchuck tried to slip into his place in the circle
without being seen. He had a nut in his mouth so that every one
knew at once that he was the thief. He was the false friend of the
thrifty Squirrel! The animals rose in a body and would have torn the
Woodchuck to pieces at once, or thrown him into the fire. But the
Manito raised his hand to quiet them. Then he called the Woodchuck
and the Squirrel to come to his side.
“I gave you a place to harvest, in the corn field,” the Manito said to
the Woodchuck. “And I gave you a friend who was good enough to
share his nuts with you because you are so fond of them. You have
disobeyed me, and stolen from your friend. As a punishment I will
take out your sharp teeth so that you can never crack a nutshell
again. You shall have grinding teeth, for eating only corn.”
Then the Manito asked the Squirrel to come closer to him, and he
fitted a pair of wings to his back. “These wings are a reward for your
industry,” he said, “and to help you gather another harvest in place of
that which the Woodchuck stole from you.”
From the night of that council fire to the present time the
Woodchuck has eaten only grains and vegetables. And there have
been flying squirrels because of the first Woodchuck who stole from
his friend.
HOW THEY
BROUGHT HAIRLOCK
HOME.

Once upon a time, at the foot of a hill, there lived little Boots and
his mother and their nanny goat, who was named Hairlock. Now
Hairlock loved to run away over the hill to the mountain, and she
could never be found when milking time came at night.
One day Boots was ready with his pail and his milking stool, and
he called, “Hairlock, Hairlock, come home to Boots,” but Hairlock did
not come.
Then Boots’s mother climbed to the top of the hill, and she looked,
and she looked, and there she spied Hairlock on the top of a crag, a
long way off.
“Naughty Hairlock,” she cried, “come home to Boots. Boots, run to
Reynard, the fox, and tell him to bite Hairlock.”
So Boots ran to Reynard, the fox, and he said:
“Good Reynard, bite my nanny goat, Hairlock, who stands on the
top of yonder crag, and will not come home to be milked.”
But Reynard said, “Not I, Boots; I’ll not dull my teeth on old
Hairlock’s skin, for I hunt to-night. Another time, Boots, another
time.”
And Boots went back and told his mother what Reynard had said.
“Then go to Greylegs, the wolf, Boots,” said his mother, “and tell
him to bark at naughty Hairlock.”
So Boots ran to Greylegs the wolf, and he said:
“Good Greylegs, bark at my nanny goat, Hairlock, who stands on
the top of yonder crag, and will not come home to be milked.”
But Greylegs said, “Some other time, Boots, some other time. The
night is cold. I must stay at home and sleep and cover my cubs.”
And Boots went back and told his mother what Greylegs had said.
“Then go to Bruin, the bear,” said his mother, “and bid him chase
naughty Hairlock.”
So Boots ran to Bruin, the bear, and he said:
“Good Bruin, chase my nanny goat, Hairlock, who stands on the
top of yonder crag, and will not come home to be milked.”
But Bruin said, “Ah, Boots, I am much too fat to chase Hairlock.
Go to the fir tree and ask him to trap Hairlock.”
So Boots ran to the fir tree, and he said:
“Good Fir Tree, trap my nanny goat, Hairlock, who stands on the
top of yonder crag, and will not come home to be milked.”
But the fir tree only bent and swayed in the wind, and said, “Ask
the woodcutter to fell me, Boots.”
So Boots ran to the woodcutter, and he said:
“Good Woodcutter, fell the fir tree, that he may trap my nanny
goat, Hairlock, who stands at the top of yonder crag, and will not
come home to be milked.”
But the woodcutter said, “Ask the joiner if he will buy my wood,
Boots.”
So Boots went to the joiner, and he said:
“Good Joiner, will you buy wood from the woodcutter, that he may
fell the fir tree? Then the fir tree will trap my nanny goat, Hairlock,
who stands at the top of yonder crag and will not come home to be
milked.”
“That I will, Boots,” said the joiner.
Then the woodcutter felled the fir tree and gave the wood to the
joiner. The joiner took the wood and made a strong yoke, which he
gave to Boots.
Then Boots and his mother ran to the top of the crag and put the
yoke on Hairlock.
And that is how they brought Hairlock home.
THE BEAR WHO
LOST HIS SUPPER.

Once upon a time old Mother Red Cap was out walking in the
forest and she came to a wild cherry tree, the branches of which
hung low with cherries. She climbed up the tree to pick her apron full
of cherries when along came Bruin, the Bear, walking under the tree.
He looked up among the branches and there he saw old Mother Red
Cap.
“Come down, Mother,” he growled, “that I may eat you.” Old
Mother Red Cap did not want to be eaten by Bruin, the Bear, so she
thought, and thought, and then she said:
“You do not want to eat an old woman like me. I will throw you
down my shoe and you may gnaw upon that until I can come down
to the ground and lead you to my house. I have two little kids there
who will make you a savory meal. Have patience, Bruin, until I can
climb down.”
This was what old Mother Red Cap said, and she threw down her
shoe. Bruin gnawed and gnawed upon the shoe, but he found it very
dry eating, so he grew angry. He called up the tree to old Mother
Red Cap:
“Come down, Mother, that I may eat you.”
“Just wait a little longer, Bruin, until I have gathered a few more
cherries,” said she, and she threw down her other shoe. “Gnaw on
this,” she said, “and I will climb down in a few minutes and show you
the way to my house.”
Bruin gnawed upon the second shoe but he found it no better than
the first. But he contented himself with the thought of the two little
kids that he would soon be eating, and he waited beneath the tree
until old Mother Red Cap climbed down.
Down she came, with her apron full of cherries; home she went,
and Bruin tramped along behind her. When they reached her house,
old Mother Red Cap took Bruin, the Bear, out to the barn and
showed him the two little kids. He was in a great hurry to get his
paws around them, but, “Wait,” said Old Mother Red Cap. “First I
must give the two little kids a fine supper that they may be fatter. Go
back to the forest for the night and return in the morning. Then the
two little kids will be fat enough for you to eat.”
So Bruin, the Bear, went back to the forest for the night. Old
Mother Red Cap gave the two little kids a fine, large supper and then
she locked the door of the barn and went to bed. Very early in the
morning she went out to the barn and unlocked the door and let out
the two fat little kids. They scampered off to pasture and were soon
so far away that neither hide nor hoof of them could be seen. Then
old Mother Red Cap locked the door of the barn again.
Almost as soon as the sun was up, Bruin, the Bear, tramped back
from the forest, growling:
“Open the barn door, Mother, that I may eat the two little kids.”
Mother Red Cap stooped down to peep through the key hole of
the barn door. Then she shook her head sadly.
“What a pity it is,” sighed old Mother Red Cap, “that the two little
kids are gone. Can it be that my two mischievous little grandchildren,
Janko and Mirko, unlocked the door and let the kids out?”
At that Bruin, the Bear, was very angry. “Then I must eat your two
little grandchildren, Janko and Mirko,” he growled.
This frightened old Mother Red Cap greatly. She thought and
thought, and then she said: “My two little grandchildren, Janko and
Mirko, are very thin indeed. I must give them three fine meals or they
will not be fat enough for you to eat. In the meantime, do you run
about through the forest to get yourself a better appetite.”
So Bruin, the Bear, went away and ran about in the woods all the
rest of the day. When it was evening he came back with a fine
appetite and rapped at the door of old Mother Red Cap’s house.
“Send out Janko and Mirko,” he growled, “and see what short work
I will make of them.”
“Oho, I’ll not do that,” laughed old Mother Red Cap from inside the
house. “You are too late, Bruin. Janko has just bolted the door so
fast that you will not be able to open it and I have put Mirko to bed,
where he is fast asleep. You must go back to the forest and come
some other day.”
So Bruin, the Bear, saw that old Mother Red Cap had got the best
of him and he went back to the forest, hungry, to look for his supper
there.
THE RABBIT WHO
WAS AFRAID.

Once upon a time, a very long way from here, a little wild Rabbit
sat under a tall palm tree. All about him were other tall palm trees
and larger animals than he, and the wild rabbit thought and thought.
And after the Rabbit had thought a while he said to himself, “What if
the earth should crack and swallow me up.”
Just then the wind blew a cocoanut down from a tree and it fell
upon the ground right beside the little wild Rabbit. Up he jumped in
great fear for now he was sure that what he had dreaded was
happening.
“The earth is cracking,” said the Rabbit, and off he hopped as fast
as he could, never stopping to try and find out what it was that had
made the noise.
As he ran he met his Mother and she said to him, “Why do you run
so fast?”
“The earth is cracking,” said the Rabbit, “and I run that I may not
be swallowed up by it.”
On ran the Rabbit, and his Mother ran with him.
As they ran, they met his Father and he said to the Rabbit, “Why
do you run so fast?”
“The earth is cracking,” said the Rabbit, “and we run that we may
not be swallowed up by it.”
On ran the Rabbit and his Mother, and his Father ran with them.
As they ran they met an Elephant, and he said to the Rabbit, “Why
do you run so fast?”
“The earth is cracking,” said the Rabbit, “and we run that we may
not be swallowed up by it.”
On ran the Rabbit and his Mother and his Father, and the Elephant
ran with them.
As they ran they passed a Deer. “Why do you run so fast?” he
asked of the Rabbit.
“The earth is cracking,” said the Rabbit, “and we run that we may
not be swallowed up by it.”
On ran the Rabbit and his Mother and his Father and the
Elephant, and the Deer ran with them.
As they ran they met a Fox. “Why do you run so fast?” the Fox
asked of the Rabbit.
“The earth is cracking,” said the Rabbit, “and we run that we may
not be swallowed up by it.”
On ran the Rabbit and his Mother and his Father and the Elephant
and the Deer, and the Fox ran with them.
As they ran they met all his Relations, and they said to the Rabbit,
“Why do you run so fast?”
“The earth is cracking,” said the Rabbit, “and we run that we may
not be swallowed up by it.”
On ran the Rabbit and his Mother and his Father and the Elephant
and the Deer and the Fox, and a hundred of his Relations ran with
him.
As they ran they came upon the Lion, who is the king of the
beasts, and the Lion said to the Rabbit, “Why do you run so fast?”
“The earth is cracking,” said the Rabbit, “and we run that we may
not be swallowed up by it.”
But the Lion, who is the king of the beasts, did not run. He spoke
again. “Which one of you is it who saw the earth cracking?” he

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