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Textbook Computational Finite Element Methods in Nanotechnology Sarhan M Musaeditor Ebook All Chapter PDF
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in Nanotechnology Sarhan M.
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Computational Finite
Element Methods in
Nanotechnology
Edited by
Sarhan M. Musa
Computational Finite
Element Methods in
Nanotechnology
Computational Finite
Element Methods in
Nanotechnology
Edited by
Sarhan M. Musa
CRC Press
Taylor & Francis Group
6000 Broken Sound Parkway NW, Suite 300
Boca Raton, FL 33487-2742
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Preface...............................................................................................................................................ix
Acknowledgments.........................................................................................................................xv
Editor............................................................................................................................................ xvii
Contributors.................................................................................................................................. xix
vii
viii Contents
13. Finite Element Method for Micro- and Nano-Systems for Biotechnology..............423
Jean Berthier
14. Design of the Nanoinjection Detectors Using Finite Element Modeling................ 477
Omer G. Memis and Hooman Mohseni
ix
x Preface
using these methods. The examples they provide include parameterized lumped carbon
nanotubes (CNTs); novice-friendly design, simulation, and layout of MEMS; an automated
lumped-to-distributed verification method; and the design exploration of a nanomechani-
cal material property tester.
Chapter 4 provides some descriptions and challenges in nanorobotic science with a real
view on the simulation of nanorobotic systems and macro-dimensions that is applicable
to small-scale nanorobots. It presents different types of nanorobots and their applications.
It focuses on macroscale nanorobots, where the FEM can be applied, and develops differ-
ent methods of manipulation at the nanoscale using these nanorobots. It also describes
manipulation at the nanoscale using macroscale nanorobots, called nanomanipulation.
The authors introduce relatively comprehensive models for these devices and classify
effective parameters in nanomanipulation. In addition, they provide an example of nano-
sized robots and study the linear and nonlinear behavior of electrical nanogenerators.
Chapter 5 presents FEMs to illustrate the simulation of structures and processes such
as dislocations, growth of epitaxial films, and precipitation. Important parameters can be
computed from these simulations, which include domain deformations and region of sta-
bility of dislocations in thin plates and critical thickness for the formation of misfit dislo-
cations. Further, new structures/phenomena like “zero stiffness material structures” and
“reversible plastic deformation due to elasticity” can also be discovered using simulations
at the nanoscale. In all examples considered in the chapter, the assumptions involve limi-
tations of the methodologies, and precautionary measures to be undertaken are stated in
order to plan for better strategies.
Chapter 6 presents modeling of the self-positioning nanostructures that is performed
by the continuum mechanics theory, the FEM, and the atomic-scale FEM with consider-
ation of cubic crystal anisotropy. The authors derive the continuum mechanics solution for
multilayer thin film structures subjected to initial strains under generalized plane strain
conditions. The chapter applies FE modeling to estimate the curvature radius of self-posi-
tioning hinges. It also develops an atomic-scale FE procedure to model self-positioning
nanostructures. The results are then compared through modeling of bilayer self-position-
ing nanostructures.
Chapter 7 presents FEMs applicable to the modeling and designing of nanocomposites,
which can be used to predict the mechanical, thermal, optical, and morphological proper-
ties of nanocomposites.
Chapter 8 presents the use of FEMs to anticipate the characteristics of carbon nano-
tubes (CNTs) and their composites. The author models discrete molecular structures as an
equivalent truss element by equating the molecular potential energy of nanostructured
materials with the mechanical strain energy of the truss element model. This modeling
method applies to a graphene sheet. The chapter shows that the FE model performs very
well and gives good results. As the FE model comprises a small number of elements, it
performs under minimal computational time. The model has also been used to investi-
gate the properties of single-walled carbon nanotubes (SWCNTs) and multi-walled carbon
nanotubes (MWCNTs). The obtained values of Young’s modulus agree very well with the
corresponding theoretical results, which demonstrate that the proposed FE model may
provide a valuable tool for studying the mechanical behavior of CNTs and nanocompos-
ites. The author shows that the obtained values of Young’s modulus agree very well with
the corresponding theoretical results and experimental measurements that are available in
the literature. The results demonstrate that the proposed FE model may provide a valuable
tool for studying the mechanical behavior of CNTs and nanocomposites.
Preface xi
Chapter 9 summarizes the recent progress made in using FEM to analyze the electric
field formed in needleless electrospinning and the relationship between the electric field
and needleless electrospinning performance. The authors show that the FEM is an effec-
tive method to calculate electric fields and intensity profiles in needleless electrospinning.
The chapter provides a visualized electric field profile, which greatly assists in correlating
with electrospinning experiments.
Chapter 10 presents how molecular dynamic (MD) simulations can be integrated into
the FEM. A new type of FE is required for force fields that include multibody potentials.
These elements take into account not only bond stretch but also bending, torsion, and
inversion without using rotational degrees of freedom. Since natural lengths and angles
are implemented as intrinsic material parameters, the developed molecular dynamic
finite element method (MDFEM) starts with a conformational analysis. By means of
CNTs and elastomeric material, the authors demonstrate that this pre-step is needed to
find an equilibrium configuration before the structure can be deformed in a succeeding
loading step. The chapter presents the theoretical background of the MDFEM as well
as guidelines for its implementation and usage. The authors conclude that, apart from
mesh generation techniques, which are not covered, all important aspects of MDFEM are
discussed from a finite element analysis (FEA) software user’s point of view: what time
integration schemes are usually available and when to use which; what the difference is
between natural and equilibrium bond lengths and angles; how to obtain an equilibrium
configuration, or when inversion energy is important; and how it can be transformed to
torsion energy. Two examples demonstrate the accuracy and efficiency of the introduced
MDFEM elements. MDFEM provides a framework that performs more than simple MD
simulations. Conventionally, MD programs are used in chemistry and physics to perform
conformational studies based on force fields. The aim is to determine equilibrium states
rather than to study the response of atomic structures under mechanical loading. The
main benefit of MDFEM is that concurrent multiscale simulations, i.e., a combination of
continuum and atomistic regions, are feasible. Complex models can be developed to pre-
dict the properties of composites containing nanoparticles, which determine the behavior
of the macroscopic material. For such models, parametric studies in terms of computer-
aided material design can be carried out to analyze the influence of changes in the atomic
structure, namely, the particle size, distribution, or the particle–matrix interface. The
results can then be used to identify the basic mechanisms that lead to the enhancement
of characteristic values of such composites and subsequently exploited to improve the
manufacturing processes. Chapter 10 also consists of two appendices (Appendix 10A—the
Newton–Raphson method, and Appendix 10B—stiffness matrices of MDFEM elements),
which provide additional information.
Chapter 11 presents a brief background of the current applications of FEA in nanomate-
rials and systems used in medicine and dentistry. The authors examine the processes used
for the production of nanocoatings and further analysis related to the factors affecting the
nanoindented biomaterials by FEA.
Chapter 12 presents the application of FEA and its usefulness in medicine, with a spe-
cial focus on nanomedicine. The author provides examples of reports based on this tech-
nique. The chapter shows that FEM is mainly helpful to study the nanostructure of several
organs in the human body in both physiological and pathological conditions and to study
nanosystem drug delivery and targeting.
Chapter 13 presents a few examples of the potentialities of the FEM numerical approach
for the design of microfluidics systems for biotechnology. The author concludes that
xii Preface
microflows, chemical and biochemical reactions, and concentration transport can be mod-
eled by using FEM methods. However, as pointed out in the introduction to the chap-
ter, much remains to be done in the domain of multiphase microflows, where tracking
interface motion and pinning is essential, and in the domain of the transport of large,
deformable particles (e.g., vesicles and globules), where modeling the steric aspects and
deformation associated to the local shear is a real challenge.
Chapter 14 concludes that, with a nontraditional geometry composed of nano-scale
sensing and amplification nodes on thick absorption layers, the nano-injection detectors
offer high-sensitivity photon detection and amplification. However, due to their nonplanar
design, type-II band alignment, and the coupled detection/amplification mechanisms, the
design and development of nano-injection devices require detailed, nonlinear, 3D FEM
simulations. The authors provide the FEM simulation a multiphysics environment for sta-
tionary, parametric, and transient simulations, all based on the drift–diffusion equations
in 2D and 3D. The model incorporates several nonlinearities such as the incomplete ion-
ization of dopants, bimolecular recombination, Auger recombination, nonlinear mobil-
ity, impact ionization, thermionic emission, hot electron effects, surface recombination
effects, and temperature effects. Furthermore, once the devices are optimized through
simulations, the nano-injection devices are fabricated through micro- and nanofabrica-
tion. The measurements show amplification factors reaching 10,000 with low dark current
densities and Fano noise suppression. The passivated nano-injection devices have band-
widths exceeding 3 GHz with a jitter of 15 ps. To form focal plane array infrared cameras,
320-by-256 pixel arrays of nano-injection detectors are hybridized. Also, with a pixel level
responsivity exceeding 2500 A/W, the nano-injection focal plane arrays show a noise level
of 28 electrons at a frame rate of 1950 fps. These imagers show two orders of magnitude
improved signal-to-noise ratio compared to commercial SWIR imagers at thermoelectric
cooling temperatures. All of these demonstrate the capabilities of nano-injection detec-
tors and imagers and make them excellent candidates for demanding applications such
as optical tomography, satellite imaging, nanodestructive material inspection, high-speed
quantum computing and cryptography, night vision imaging, and machine vision for
process control.
Chapter 15 presents the use of the spatial motion of the coupler from the traditional
spatial four-bar linkage (SFL) as an output link (OL) and, in particular, as a carrier of the
bioreactor chamber. Also, the authors provide the use of SFL with two spherical joints and
two degrees of freedom (DoF), wherein the full rotation of the coupler or the bioreactor
chamber, respectively, around its own axis is performed by a second actuator. The module
of the bioreactor chamber with the actuator is connected to the coupler of the mechanism
through a fixed connection.
Chapter 16 demonstrates that automatic meshing and its associated nano-objects is a
convenient way to produce, in 2D and 3D as well, full spaces without any vacuum. As a
consequence, it lets the boundaries display their specific behavior. This is compatible not
only with all the geometrical shapes, circles, spheres, and so on but also with the shapes
extracted from experimentation as shown with the bean in the chapter. Also, the authors
conclude that automatic meshing can be seen as a way to be filled with nanoparticles and
implement empty spaces between objects.
Two different applications are described all along the chapter: first, computation of
mean values of physical constants of heterogeneous material, for instance, thermal and
electric conductivity, permittivity, etc. with or without the grain joins influence; second,
evaluation of capillary flows leading to an inside knowledge of permeability, and it
letting out of the computation of the nanoparticles which acts only by their surfaces, but
Preface xiii
keeping them. On these geometries, it is possible to use all the classical FEMs used for
drying, sintering, microwave heating, and so on. As a consequence, when a problem is
solved in a small domain, it is possible to enlarge the solution to larger domains, just by
matrix association. Comsol Multiphysics and MATLAB softwares are used (run on an HP
Z800, 16 proc, 64 Gbits).
Finally, the book concludes with two appendices. Appendix A shows common material
and physical constants, with the consideration that the material constants values varied
from one published source to another due to many varieties of most materials and also
because conductivity is sensitive to temperature, impurities, moisture content, as well as
the dependence of relative permittivity and permeability on temperature and humidity
and the like. Appendix B provides common symbols and useful mathematical formulas.
COMSOL and COMSOL Multiphysics are registered trademarks of COMSOL AB. For
details visit www.comsol.com
Sarhan M. Musa
Acknowledgments
My sincere appreciation and gratitude to all the book’s contributors. Thank you to Brian
Gaskin and James Gaskin for their wonderful hearts and for being great American
neighbors. It is my pleasure to acknowledge the outstanding help of the team at Taylor &
Francis Group/CRC Press in preparing this book, especially from Nora Konopka, Michele
Smith, Kari Budyk, and Joette Lynch. Thanks also to Dr. Vinithan Sethumadhavan from
SPi Global for his outstanding suggestions. I would also like to thank Dr. Kendall Harris,
my college dean, for his constant support.
Finally, the book would never have seen the light of day if not for the constant support,
love, and patience of my family.
xv
Editor
xvii
Contributors
A. Homayooni
Jean Berthier
Nanorobotic Group in Robotic Research
Department of Biotechnology
Laboratory
CEA Leti
College of Mechanical Engineering
and
Iran University of Science and Technology
Department of Physics
Tehran, Iran
University Joseph Fourier
Grenoble, France Andreas Kempe
Institute of Structural Analysis
Andy H. Choi Leibniz Universität at Hannover
Faculty of Dentistry Hannover, Germany
Dental Materials Science
The University of Hong Kong M.H. Korayem
Pokfulam, Hong Kong, People’s Republic Nanorobotic Group in Robotic Research
of China Laboratory
College of Mechanical Engineering
Orion Ciftja Iran University of Science and Technology
Department of Physics Tehran, Iran
Prairie View A&M University
Prairie View, Texas Arun Kumar
Department of Materials Science and
Jason Vaughn Clark Engineering
School of Electrical and Computer Indian Institute of Technology
Engineering Kanpur, India
and
School of Mechanical Engineering Serge Lefeuvre
Purdue University Eurl Creawave
West Lafayette, Indiana Toulouse, France
xix
xx Contributors
Jing Zhang
M. Tzoneva Department of Mechanical Engineering
Faculty of Engineering and Education Indiana University—Purdue University
Technical University of Sofia Indianapolis
Sofia, Bulgaria Indianapolis, Indiana
1
Overview of Computational
Methods in Nanotechnology
Orion Ciftja
Prairie View A&M University, Prairie View, Texas
Sarhan M. Musa
Prairie View A&M University, Prairie View, Texas
CONTENTS
1.1 Introduction............................................................................................................................. 1
1.2 Nanoscale Structures Relevant to Nanotechnology.......................................................... 3
1.3 Modeling Methods................................................................................................................. 4
1.3.1 Modeling of Carbon Nanotubes and Nanocomposites......................................... 5
1.3.2 Modeling of Electronic Quantum Dots...................................................................6
1.3.3 Modeling of Quantum Wires and Nano-MOSFET Devices................................. 8
1.4 Finite Element Method for Capacitance Extraction of Interconnects in
Microscale Circuits............................................................................................................... 10
1.4.1 Microscale Single Interconnect Line on Si–SiO2 Substrate................................. 11
1.4.2 Microscale Coupled Interconnect Lines on Si–SiO2 Substrate........................... 11
1.5 Conclusion............................................................................................................................. 12
Acknowledgment........................................................................................................................... 15
References........................................................................................................................................ 15
1.1 Introduction
If one considers which research areas in physics, chemistry, and engineering experienced
the strongest growth in the last 10 years, then it is likely that material sciences and
nanotechnology stand out as front runners. While it is fair to say that material sciences have
always been important, it is also true to state that until very recently they were somehow
limited in scope. Before the nanotechnology revolution, all material sciences research
was basically dominated by physics and engineering. The major driving force behind
such research were attempts in computer and information technologies to miniaturize
transistors and electronic processors. Essentially, all was a top-down strategy: start with a
macroscopic device and then try to make it smaller and smaller.
Nanotechnology introduced an absolute change in this mindset. Namely, the new
nanoscale branch of modern material sciences is now more concerned with a bottom-
up strategy. Nowadays, one wants to manipulate atoms/molecules in such a way as to
1
2 Computational Finite Element Methods in Nanotechnology
These important nanoscale structures are well defined by experiment and tractable using
standard theoretical and computational tools. Moreover, they have been demonstrated to
hold promise in future nanotechnologies. All computational methods devised to study
the properties of these nanoscale structures attempt to solve accurately problems such as
understanding the response of nano-building blocks and nanodevices to external probes,
explore novel theories and models to predict behavior and reliability of nanosensors and
devices, understand classical and quantum transport in nanostructures, and so on.
improvements are needed. Many nanosystems are driven more by entropy (temperature)
than by energy. Modifications of current methods that are entropy (temperature) or free-
energy friendly are badly needed. Current methodologies for free energy (temperature-
dependent methods) such as the path integral Monte Carlo (PIMC) method are usually
extremely complex and not friendly.
In contrast, continuum methods have had much success in the macroscale modeling
and simulation of nanostructures. Finite element methods (FEM) are now the standard
numerical analysis tool to study diverse problems. Therefore, the logical approach taken
by many researchers in the desire to create truly multiple-scale simulations that exist at
disparate length and time scales has been to couple various methods like MD, MC, and
FEM in some manner and apply them to nanostructures. Unfortunately, the coupling of
these methods is neither easy nor straightforward.
carbon nanotubes depend on aromatic structure and wrap style. Several studies [1,2] have
indicated that nanotubes possess excellent electromagnetic properties. For example, one
can use controlled dispersion of specifically designed carbon nanotubes into supporting
polymer matrices. Experiments have shown that the percolation (onset of conductivity)
for these nanocomposites is less than one-half of 1% by volume. The electrically conduc-
tive polymer nanocomposite materials, compared to conductive metal-filled systems, offer
substantial weight savings, flexibility, durability, low-temperature processability, and tai-
lored reproducible conductivity. The material’s enhanced high-frequency absorption capa-
bility suits the cable shielding very well [3]. So far, the main challenge in such studies is
to develop modeling methods capable of bridging the gap between nanoscale level struc-
tures and their micro-/macro-level counterparts.
A carbon nanotube consists of a large number of atoms. Thus, modeling of nanotubes
requires sophisticated numerical tools, powerful computer processors, and three-
dimensional visualization. The work generally begins with modeling of a single
nanotube for its electrical conductivity and continues with modeling of the interactions
of a nanotube with the surrounding polymer molecules in a polymer-based composite.
Among the many available software for nanoscale modeling, we mention NWChem, ADF,
ABINIT, VASP, and Spartan. Bridging the gap between nanoscale modeling and micro/
macro modeling is a very challenging research task. The major challenge is to develop
reliable methods for calculating effective properties that are passed on from nanotube
level to nanocomposite level. Possible approaches include (1) accurate data management
between two levels of computer codes, nanoscale computer code and microscale computer
code, and (2) establishment and incorporation of constitutive relations into finite element
software code to predict nanomaterial properties. Specific approaches of transferring
modeling parameters (electrical conductivity) include the application of “exact scaling
laws” [4] for electrical conductivity properties of polymer nanocomposites to bridge the
orientation distribution of macromolecules of composites.
Finite element codes like ANSYS, COMSOL, and Nastran are available and have been
applied to simulate electromagnetic field and a single electrode. Research work in finite
element areas begins the modeling of a nanocomposite shell in electromagnetic field.
Available electrical properties of nanocomposite materials derived from experimental
data are then applied in conjunction with the finite element modeling. Results obtained
from the finite element analysis are used as benchmarks for further studies. When
computational modeling results become available, one starts the work of bridging the
nanoscale to macroscale gap. Tasks may include data management, establishment of
constitutive relations, probability theories, and other emerging methods. Studies of the
influence of external factors such as electric field, magnetic field, and radiation effects on
carbon-nanotube polymer-based composites and carbon-nanotube thin films are crucial
to understand a variety of possible applications. This includes aerospace applications in
which devices made from these materials would serve, for instance, as radiation shielding.
While external factors will cause some degradation of given properties of these materials,
it is also possible that they may enhance other desirable properties.
In 1890 the first truly realistic opera was written in Italy. A prize
was offered by the publisher Sonzogno and an unknown man, Pietro
Mascagni, won it with Cavalleria Rusticana (Rustic Chivalry). He
was born in 1863, the son of a baker. He was a musical boy, but his
father wished him to be a lawyer, so he had to work at the piano in
secret. One day when he had been locked up by his father who did
not want him to practise, he was discovered by his uncle, who
sympathized with him and took him to Count Florestan, who helped
the young musician to study in Milan.
Mascagni’s work in Cavalleria Rusticana was vivid and he used
both the old and the new style of writing. It is full of the most
entrancing melody (the Intermezzo, the Brindisi, or drinking song,
and Santuzza’s aria, Voi lo sapete). He also wrote Iris and Amico
Fritz, which never equalled Cavalleria.
With Ruggiero Leoncavallo (1858–) it was different, for only after
writing a number of operas did he produce a success in the world-
famous I Pagliacci. He wrote the tragic story of these strolling
players as well as the music, which is not as popular in style as
Cavalleria, but it is superbly put together and very dramatic. As
these operas are both short, they are often performed together. The
rôle of Canio (I Pagliacci) was one of Caruso’s masterpieces. How
wonderful to think that his voice has been preserved for the future
generations through his records of which Ridi Pagliaccio (Laugh
Clown) is one of the finest. It is generally admitted that Caruso’s
voice was the most glorious of our age, and certainly there was no
artist more idolized than he. In this same opera Antonio Scotti’s
performance of the famous Prologue is equally beautiful.
Giordano
Georges Bizet.
Vincent d’Indy.
Camille Saint-Saëns.
Jules Massenet.
Gustave Charpentier.