Professional Documents
Culture Documents
Genome Assembly Data: Aedes Aegypti
Genome Assembly Data: Aedes Aegypti
Data
Aedes aegypti
AedesF5AOL
# contigs (>= 0 bp) 314759 Total length 999516386
# contigs (>= 1000 bp) 139718 Reference Length 1278732104
# contigs (>= 5000 bp) 31593 GC % 38.33
# contigs (>= 10000 bp) 16126 Reference GC % 38.13
# contigs (>= 25000 bp) 7591 N50 21596
# contigs (>= 50000 bp) 3533 NG50 8056
Total Length (>= 0 bp) 1027536030 N75 4086
Total Length (>= 1000 bp) 949605930 NG75 904
Total Length (>= 5000 bp) 714752225 L50 8619
Total Length (>= 10000 bp) 608711196 LG50 19553
Total Length (>= 25000 bp) 475885130 L75 39316
Total Length (>= 50000 bp) 332527005 LG75 149652
# contig 209299
Largest contig 627755
AedesF5AOL
# misassemblies 5209 Largest alignment 627755
# misassembled contigs 4444 Total aligned length 970548911
Misassembled contigs length 4715966 NA50 21536
# local miassemblies 20675 NGA50 7977
# scaffold gap ext. mis. 0 NA75 3919
# scaffold gap loc. mis. 0 NGA75 525
# unaligned mis. contigs 6125 LA50 8631
# unaligned contigs 3864 + 9967 part LGA50 19627
Unaligned length 13140529 LA75 39869
Genome fraction (%) 73.855 LGA75 179362
Duplication ratio 1.044
# N’s per 100 kbp 0.00
# mismatches per 100 kbp 1108.37
# indels per 100 kbp 107.86
BUSCO – Aedes IDBA
Complete BUSCOs (C) 81.6%