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SPECIALIZATION
BIOLOGICAL SCIENCES
Modified and Prepared by: Jeffrey A. Farillas, LPT
CONTENT:
The Need for classifying organism
There are diverse organism living on earth, animals alone are so varied that they need to be
understandably classified so as to guide biologist in organizing and naming them, so to study the diversity of
organism, an organized classification system must be used.
Taxon-a taxonomic category or group, such as a phylum, order, family, genus, or species
Taxonomy-the scientific classification of organisms into specially named groups based either on shared
characteristics or on evolutionary relationships.
Aristotle (father of zoology and taxonomy), who first classified living things as either plants or animals.
After his time the Greeks and Romans expanded his simple method of classification into more specific ones like
genera and species using Latin language, but in the mid-1700’s, a more organized naming system was
introduced by a Swedish botanist/naturalist Carolus Linnaeus (Father of Modern Taxonomy) who took a major
step in naming organism, he developed a two-word naming system called binomial nomenclature.
An example is Felis domestica. It is the scientific name of the cat that we have at home. The first part of this
scientific name is the genus where the organism belongs.
A genus is a group of closely related species. The genus Felis is also the same genus for the lion
Felis leo. That means the cat and the lion are closely related.
The second part of the scientific name is unique to each species within the genus. The name domestica
means that a cat is domesticated for you to take care at home. The species is often a Latin description of
an organism’s trait or where it lives.
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LEVELS of CLASSIFICATION The Domains of life and Kingdom System
(Taxonomic category)
Family
Genus
Species
The two smallest categories, which are the genus and species, make up the scientific name of an
organism. Genera that share many similar characteristics are grouped into a larger category, the family. Similar
families make up a bigger category called order. The class is the next larger category, which comprises similar
orders. While a phylum is formed by several different classes that have similar characteristics followed by
kingdom and finally the Domain is the broadest of the taxonomic categories.
Domain Eukarya
Kingdom Protista
Kingdom Fungi
Kingdom Plantae
Kingdom Animalia
These three domains are possibly monophyletic which means that they all came from a common
ancestor, thus forming a monophyletic clade. Based on studies, you might be surprised to know that Domains
Archea and Eucarya are more related than domain Bacteria.
DOMAINS
FEATURES
Archae Bacteria Eukarya
Membrane bounded
Absent Absent Present
organelles
Peptidoglycan in the
Absent Present Absent
Cell wall
First amino acid formed in
Methionine Formymethionine Methionine
protein synthesis
Number of different RNA
Several One Several
polymerases
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The Six kingdom
Kingdom Archaebacteria
Members of this kingdom are popularly called as “extremophiles” they are found in the most extreme
environments you could imagine. They are found in volcanic vents, brine pools, and black organic mud that lack
oxygen. Many can survive in the absence of oxygen. They said to be “ancient” bacteria because they resemble
the conditions of the earth when life first appeared and began to evolve. Based on the environments in which
they live, they are classified into:
1. Halophilic – Those that live in extreme salty environment such as the Salt Lake.
2. Thermoacidophilic- Heat loving organism and can live in places with boiling water temperature, and
in an acid condition of even less than pH.
3. Methanogens – they live in oxygen-free environments (anaerobic) and produce methane gas. They
are common in swamps, bogs and landfills.
4. Sulfulobus – They are sulfur loving bacteria, they live in places of high sulfur content like in mud
spring and hot spring
5. Cold loving bacteria – Those that can live in freezing temperatures.
Kingdom Eubacteria
Eubacteria are considered the “true” bacteria. Most bacteria belongs to this kingdom. They are found
almost everywhere and are that one people are most familiar with. Some species live in soil, while others infect
other organisms and cause disease. Still others are photosynthetic, meaning they make their own food using light
energy.
Eubacteria comes in different shapes and although they are unicellular, some of them are found in clumps or in
chains as show in the figure below
Staphylococcus Streptococcus
(Cluster) (Chains)
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Sexual Reproduction of Bacteria
Most bacteria reproduce by binary fission, the division of a cell into two daughter cells with duplication of
their single chromosomes. Others undergo conjugation, a form of sexual reproduction where part of the genetic
information from one cell is transferred to another cell. Certain bacteria reproduce only by binary fission but pick
up bits and pieces of DNA from other bacteria, this process is called transformation.
Most bacteria are harmless to humans, and many bacteria are essential or useful to the existence of
plant and animal life, only a small fraction of bacteria cause disease. Most bacteria attack organic matter only
after it is dead. If there’s no bacteria no organism will breakdown material from animals and plants after its death.
Some bacteria also are used in industry like in the production of cheese, yogurt and butter; it is also used to treat
soils contaminated with toxins.
Kingdom Protista
Organism under this kingdom include unicellular and a few multicellular eukaryotes. Protists live in places
with water or places with at least some moisture. These organisms are so diverse that taxonomist differs in their
way of classifying them into categories.
Some protists are like plants in form but they have no chlorophyll that can capture light. These protists
look like fungi, hence are called fungus like protist.
Some protist look like animals, very small and motile, some with green chlorophyll pigments. These
protists are called protozoans.
Some protist look like plants with leaf-like structures of various color, structure and shape. These plant
like protists are called algae.
Fungus like protist lack chlorophyll and absorb food through their cell walls. They possess
characteristics similar to fungi. All of them are heterotrophs that absorb nutrients from dead or decaying
organic matter. However, unlike most fungi, fungus like protists contains centrioles and lack of chitin in
their cell walls not like true fungi. Fungus like protist includes slime molds, cellular slime molds and water
mold.
Protozoans used to include under the animal kingdom because they have characteristics similar to
multicellular animals. Protozoan are unicellular, being heterotrophic, they ingest food from the
environment. They live in oceans, ponds and stagnant water few of them live as parasites in the digestive
tract of animals.
Protozoans are classified into groups according to their structures for locomotion.
Phylum Zoomastiginia - Under this group are the zooflagellates That live in
aquatic environment. The locomotory structures of these organism are
flagella.
Some zooflagellates are free living and derive nourishment from
decaying organic materials. Other species are parasitic to human beings like
Trichonomas vaginalis and Trichonomas brucie “ that causes vaginal
itchiness and African sleeping sickness
Phylum Sarcodina – Under this group are the Amoeba and Foraminiferans.
Pseudopodia are the structures for locomotion of organism belong in this
group it is also use for engulfing food.
Pseudopodia are flexible extensions of the cell and can assume any
shape. These pseudopodia are in constant motion – extending, radiating,
branching, and fusing with others.
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Phylum Ciliophora – Organism under this group are commonly called
ciliates because they have cilia a short like hair projection similar to flagella.
Cilia are used for feeding and movement. A paramecium is an example of
ciliates that are commonly found in fresh water ponds.
Some ciliates like Didinium are predators, like the parasite in the
intestine of swine and human being, it usually transmitted by fecal
contamination of water and food.
Algae are unicellular to multicellular organism formerly classified as plants, they contains chlorophyll and
are therefore capable of photosynthesis. Chlorophyll and accessory pigments give algae a wide variety
of colors like red, brown, and green etc..
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Phylum Pyrrophyta (fire or dinoflagellates) – Dinoflagellates are abundant in
marine waters; only a few species are found in fresh waters. They have two
flagella often wrapped around the organism’s circumference. Most of this
organism is photosynthetic and the rest is heterotrophs.
Dinoflagellates include a genus called Gonyaulax. During rainy season,
overgrowth of Gonyaulax causes red tide. These dinoflagellates produce a
poison toxins. Filter-feeder shellfish like clams and mussels can trap Gonyaulax
for food and thus harboring the toxins.
Unicellular algae are the phytoplankton in bodies of water that become food for other organism, playing a
vital role in the food web. Algae are the major source of oxygen on earth. They absorb carbon dioxide from
photosynthesis. Red algae that form calcium carbonate deposits are important in the building of coral reefs.
Kingdom Fungi
Most fungi are multicellular eukaryotic organism except for yeast which is a unicellular. They possess
long, threadlike structures called hyphae which they stick into their food materials. The cell walls of fungi are
made of tough, flexible carbohydrates called chitin unlike plant cell walls that are made up of cellulose.
Fungi are heterotrophs, they secrete enzyme that break down food into simpler molecules that absorbed
by them rather than ingesting. Some fungi are parasitic they absorb nutrients from other plant and animals that
serves as their host.
Fungi are classified into division using a well define life cycles as shown below.
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Phylum Ascomycota “Ascomycetes”: (Sac fungi) - Penicillium the
source of the antibiotic penicillin, is a well-known ascomycete discovered
by Alexander Fleming in 1928. Ascomycetes include numerous sac
fungi, yeast, mildews, truffles, morels that live independently. Most of
these species live on moist decaying materials, other are parasitic.
Phylum Basidiomycota: (Club fungi) – This is the kind of fungi you are
most familiar with. Mush rooms are the most common type of club fungi.
This phylum also includes the puffballs and bracket fungi that grows on
the trunk of trees.
Several protist infect the human digestive system due to dirty and contaminated water. Entamoeba
histolistica and Giardia lambia are protist that attack the intestinal wall and can cause amoebiasis and giardiasis.
Diarrhea, abdominal pain, and even liver abcess can result from these infections.
Malaria is a fatal disease that is caused by a sporozoan of genus Plasmodium. It is transmitted through a bite of
Female Anopheles mosquito. Plasmodium enters the blood through the saliva of the mosquito. It infects liver cells
and red blood cells and produces fever and chills.
Kingdom Plantae
Kingdom Plantae consist of autotrophic, unicellular, and multicellular organism. They are made up of
different types of cells that perform different functions. Plants, being autotrophs, manufacture their own food.
Plants are classified according to the presence or absence of conducting vessels or vascular tissues
known as phloem and xylem. Conducting vessels are structures that transport water and nutrients throughout the
plant body. Those that possess conducting vessels are classified as vascular plants (tracheophytes) while those
do not are classified as nonvascular (bryophytes). Vascular plants are the most diverse and widely distributed
group of plants.
Phylum Bryophyta – This phylum is represented by mosses. Mosses are found in many places in the
world, on moist places like swamps, river banks, and on forest floor. Some species form a carpet
over slippery rocks along water falls, some grow on trunks, rocks and soil.
Mosses have a root like structures called rhizoids that hold the plant in place, absorb
water and nutrients. These low-growing plants have no vascular tissue to conduct water and
nutrients hence these substances diffuse from cell to cell.
Phylum Hepaticophyta – Liverworts are members of this phylum. The plant have a leaflike structures
that are almost flat attached on moist soil or rock surface, they are capable of living in areas
where there is less available nutrients and minerals. They also have rhizoids which also serve to
anchor the plant to the soil.
Phylum Anthocerophyta – Hornworts are represented by this phylum. Hornworts are found in moist
places most often together with mosses and liverworts. Hornworts can be identify in the soil
surface when they produce the sporophytes “tiny green horn-like structures above the mass of
leaf life structure”.
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Mosses Liverworts Hornworts
Phylum Psilophyta – these are the simplest vascular plants.they have no true roots and leaves. The
stem has small, scale like green tissue called enations and it is photosynthetic. Ex. Psilotum and
Tmesipteris
Phylum Arthrophyta – Commonly called horsetail because the stem looks like tail of a horse. Horsetail
is known as “living fossils” They do not change much since they evolve.
Phylum Lycophyta – This includes the club mosses, spike mosses and quillworts. Fossils records that
these organisms dominated the earth’s first forest, which now constitute the huge deposits of
coal.
Phylum Pterophyta – This is represented by Ferns. Ferns thrivebest in moist places, or seasonal wet,
little light in forest. Many species have been domesticated as ornamentals that can survive dry
places. Plant height varies from few millimeters to as high as 25 meters. Some like herbs, others
are vines and a few ones are as woody trees.
The most familiar plants of today are the vascular plants with seeds. These plants have cuticle on
surface of leaves that enable them to adapt to varying amount of moisture.
They have well-developed conducting tissue that enable them to grow high above the ground. Some
are found in deserts, grasslands, forest and even in bodies of water. The dominant phase is sporophyte. This is
the part of the plant that we always see among vascular plants. The gametophyte produces sex cells, does not
live independently of the sporophyte, and does not need water to fertilize the egg. The sperm found in the pollen
grain is transported by wind or other agents.
They are two major groups of vascular plants with seeds, the gymnosperm and the angiosperms.
Gymnosperm
Phylum Ginkgophyta – Gingko biloba is the only one living species of this phylum. The deciduous
tree can grow to about 30 meters, produce pollen in one plant and female cones protected by
fleshy covering in another plant.
Phylum Cycadophyta – These are cycads, palm like stout and erect trunk, leaves arrange like a
rosette at the upper part of the trunk, leaflets are small, stiff and dark green. They are usually
found in tropical rain forest and in beaches where they are purposely planted.
Phylum Coniferophyta – The conifers are the most commonly known among the gymnosperms. They
are tall trees, with spreading branches, evergreen needle-like leaves may be groups or clusters
called fascicles. The conifers have adaptations on their trunks, leaves and seeds to survive harsh
conditions in cold places where they thrive.
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Agiosperm
The angiosperms are the most abundant and widely distributed modern day plants. One distinguishing
characteristic of angiosperms is the production of seeds that enclosed in fruit. The seeds offer survival advantage
to flowering plants because these are protected from desiccation by the seed coat and the fruit.
Kingdom Animalia
Of all the kingdom of life, the animal kingdom is the most diverse. Animals vary in size, color, and shape.
They live in various habitats and they move in different means. They are multicellular organism and are
heterotrophs, have specialized tissues, and most have organ and organ system.
The animal kingdom is grouped into two major divisions the Vertebrates (with vertebral column) and
Invertebrates.
All Cnidarians have nematocysts or special stinging structures that are used to kill its
prey.
Worms
Some flat worms grow on or in living things as parasites just like in the case of Tapeworm that
lives in the body of many animals and compete for the nutrients from their host.
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Roundworms: Phylum Nematoda
Roundworms look like strands of spaghetti with pointed ends. Many roundworms are
animal parasites. Trichinella is a type of roundworms that lives in the muscle tissue of pigs. If a
person eats a piece of raw or undercooked pork, the Trichinella enters that person’s body.
Another type of roundworm is the hookworm; it enters the body by burrowing through the skin on the
soles of feet. It eventually ends up in the intestine of its host
Mollusk are divided into three main groups based on certain characteristics, the presence of a
shell, the type of a shell, and the type of foot,
Tentacled Mollusks
Considered as the highly developed mollusks, they are also called as cephalopods. Examples of
these are the octopuses that have eight tentacles and squids (have ten tentacles). Most
cephalopods do not have an outer shell, and all of them have tentacles. Most cephalopods move
by using a form of jet propulsion.
An Exoskeleton is a waterproof rigid outer covering; it limits water loos form arthropods, making it
possible for them to live in remarkably dry environments.
Crustaceans
Crustaceans is an arthropods with hard exoskeleton, to pairs of antennae, and mouth
parts used for crushing and grinding food. Crabs, lobsters, and shrimps are examples of
crustaceans
Arachnids
Spiders, scorpions, ticks and mites are called Arachnids. The body of arachnids i s
divided into two parts: a head and chest part and an abdominal part, they have also a four pair of
walking legs.
Insects
Insects are described as having a body part that is divided into three parts, a head, a
chest and an abdomen. An insect has three pairs of legs attached to the chest part.
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Echinoderm: Phylum Echinodermata
Echinoderm includes sea star, sea cucumbers, sea urchins and sand dollars. Animals belong to
this phylum are spiny-skinned animals. Echinoderms have an internal skeleton, five or more rays, a water
vascular system, and structures called tube feet.
There are eight groups of vertebrates. Six are cold blooded and two are warm blooded. Cold blooded
animals. Such as fishes, amphibians and reptiles, rely on environment for heat, on the other hand Warm blooded
animals, such as birds and mammals, maintain their body temperatures internally. They maintain a constant body
temperature despite temperature changes in their environment.
Fishes
Fishes are water dwelling vertebrates that have scales, fins, and throats with gill slits. Fishes
have a fairly well-developed nervous system. Almost all fishes have sense organs, and many fishes have
keen senses of smell and taste.
Amphibians
Amphibians are vertebrates that are fishlike and that breathe through gills when still immature.
Once matured, they live on land and breathe through lungs. ex: Frogs, Salamanders and Newts.
Reptiles
Reptiles are vertebrates that have lungs and scaly skin. They produce a special type of egg,. The
egg surrounded by a protective shell that prevents the contents of the egg from drying out. All living
reptiles are cold-blooded. They have skin that are completely covered by a tough, dry, thick layer of
scales.
Birds
Birds are warm blooded egg-lying vertebrates that have feathers. Birds eat many different kinds
of food, and because they are warm-blooded, they must expend energy in order to maintain their body
temperature.
Mammals
Mammals include human, whales, bats, elephants, lions, dogs, kangaroos and monkey. They are
warm blooded vertebrates that have hair of fur and that feed their young with milk. The way in which
mammals reproduce differs. The difference in reproduction provides a means of classifying mammals
into three groups: The laying mammals. Pouches mammals and Placental Mammals.
Soil- Plant life is supported by soil in which it is anchored. Soil is a mixture of minerals, organic materials,
air, water and other microorganisms.
Nutrients – Nutrient requirements of plants include oxygen, nitrogen, carbon dioxide, water and various
minerals required in different amounts.
Plants require eight (8) micronutrients and nine (9) macronutrients that should be supplied in
minute amounts. They include the following:
Micronutrients
Manganese, Zinc, Iron, Boron, Copper, Nickel, Molybdenum and Chlorine
Macronutrients
Sulfur, Phosphorus, Carbon, Hydrogen, Oxygen, Nitrogen, Potassium, Calcium and
Magnesium
Beneficial Plants
Generally, plants are beneficial to mankind and to other living organisms. They are so useful that not a
single day passes without the use of plants. Plants help regulate the global climate; they help provide a cooler
environment.
Another benefit that we can get from plants, aside from nutrition. Plants also use to help in the
breakdown or reduce the concentration of pollutants in the environment. These pollutants could either be
concentrated then broken down into simpler, non-toxic forms by the plants. The use of plant by this means is
called Phytoremediation.
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