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Organic Chemistry
Dr. Jolanta E. Marszalek
Aug-Dec 2022
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Chemical Bonds
• Atomic model
• Different kinds of bonds
• What is electronegativity
• Lewis dot structures, VSEPR, bond
hybridization
• How the type of chemical bonding affects
the bulk properties of a material
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Atomic model
• Periodic table
• Reading Periodic table
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Electrons in an Atom
• According to the Bohr Model, electrons (e-) can only
orbit the nucleus in specific, allowed pathways
• They move toward and
away from the nucleus by
“steps” or discrete
amounts of energy
(a quantum)
that are released or absorbed
•
e- further from the nucleus have more energy
• Those closer to the nucleus have less energy
Excited state
ground state
Excited state
Energy
Energy
ground state
ABSORPTION EMISSION
• I have believed:
– Electrons are found in discrete energy levels (as
Bohr believed)
– BUT, the electron does not move around the
nucleus in a fixed orbit
This all led to the modern quantum theory…
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Electron Configuration 9
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Quantum Mechanics
It is the “address” of an electron
• En donde Vives? (4 things)
- State
-City
- Street Name
-House Number
• Electrons are identified the same way (4 things)…
- Principle (identified by 1,2,3,4)
- Orbital (identified by s, p, d or f)
- Magnetic
-Spin
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F-Orbitals!
f-orbitals
14
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• s sublevel
– Spherical shaped
– One orbital
– Holds two e-
•
p sublevel
– Peanut or dumbbell shaped
– Three orbitals
– Holds six e-
• d sublevel
– Double peanut shaped
– Five orbitals
– Holds ten e-
• f sublevel
– Flower shaped
– Seven orbitals
– Holds fourteen e-
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The arrangement of
electrons in an atom
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Orbitals
• Orbitals
– Each sublevel (s, p, d, f) contains orbitals.
– Remember, orbitals are electron-clouds that hold the
electrons 90% of the time.
14 electrons, 7 orbitals
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and -
19
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Hund's Rule
• Single electrons with the Nitrogen:
same spin must occupy each
1s2 2s2 2p3
equal-energy orbital before
additional electrons with
opposite spins can occupy 1s2 2s2 2p3
the same orbitals.
NOT
– Electrons are
UNFRIENDLY
twenty-one
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• Np6
22
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sdf p
2. Subshell letter (eg s, p, d, f…)
Sulfur = 1s22s22p63s23p4
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5s 5p 4d
Bohr Model
4s 4p 3d
3s 3p
N
crS
iabn
yryagerrtle A
E
2s 2P
1s
Electron Configuration
NUCLEUS
H = 1s1
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4s 4p 3d
3s 3p
N
crS
iabn
yryagerrtle A
E
2s 2P
1s
Electron Configuration
NUCLEUS
He = 1s2
Electron Configuration 25
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5s 5p 4d
Bohr Model
4s 4p 3d
3s 3p
N
crS
iabn
yryagerrtle A
E
2s 2P
1s
Electron Configuration
NUCLEUS
Li = 1s22s1
Electron Configuration 26
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4s 4p 3d
3s 3p
N
crS
iabn
yryagerrtle A
E
2s 2P
1s
Electron Configuration
NUCLEUS
C = 1s22s22p2
Electron Configuration 27
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4s 4p 3d
3s 3p
N
crS
iabn
yryagerrtle A
E
1s
Electron Configuration
NUCLEUS
N = 1s22s22p3
Electron Configuration 28
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More Practice
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Homework #1
Electron Configuration
1. Write the
a. Energy level diagram
b. Bohr Model
c. Electron configuration in numbers
For Gallium (6pnt)
2. Write only electron configuration for (12pnts) a)
Neon
b) Bromine
c) Lead
d) Calcium
e) Potassium
f) Iodine 33
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SUMMARY
Atom models
Quantum location of electrons
Orbitals determined by wave equation: s, p, d,…
Electron configuration
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Definitions
• Chemical Bond – mutual electrical attraction
between the nuclei and valence electrons
of different atoms that bind the atoms together
• Valence electrons – outermost electrons that
are available to be lost, gained, or shared to
form a chemical bond
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Definitions
• Chemical Bond – mutual electrical attraction
between the nuclei and valence electrons
of different atoms that bind the atoms together
• Valence electrons – outermost electrons that
are available to be lost, gained, or shared to
form a chemical bond
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Chemical Bond
Atoms
Molecule
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Electronegativity
• Electronegativity - measure of an atom's
ability to attract electrons.
• Electronegativities tend to increase across
a period and decrease down a group
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Electronegativity Values
• Increases from left to right across a period
• Decreases down a group of representative
elements
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practice
COVALENT BONDING
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Formation of a Bond
• Nature favors chemical bonding because most
atoms have lower potential energy when they
are bonded to other atoms
• Each atom has a positive nucleus in the center and
negative electrons surrounding the nucleus
• The positively charged nuclei are attracted to the
negatively charged electrons
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Lewis Structure
steps
1. Place the element symbol in the center
2. Read the number of valence electrons
3. Place electrons around the symbol
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Mg AC
Q To the
Yes Yes
CL EITHER EITHER
Xe h
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Ne F
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F F
# =7 # =7
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FF
# =8 # =8
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FF
# =8 # =8
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Lewis Structure
• A Lewis Structure is a :
representation of covalent bonding : : :: : CL :
:
using Lewis dot symbols in which :CL c F :
: : :
shared electron pairs are shown as :::F :
a pair of electrons or a line
between two atoms : : : CL :
Give each
Draw bonds
Step 4 atom 8e-
(2e-for H)
Complete Step 5
Octet Check the
structure
lewis
Structure
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Molecular
formula For NF3
Sum of
valence e- 8e- ::: N 5e-
Atom F: : :F :
placement N F 7e- X 3 = 21e-
8e-
Draw bonds : Total 26e-
F
::
8e-
Remaining
valence e-
lewis
structure
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Practice/Homework
H2S _ NF3 CHCl3 CaSO4
N2 O2 C2H6 CO2
H2O2 NH3 SO3 SiF4
HONO2 NO2
+ HCN HCOOH
OO
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Electronegativity Values
• Increases from left to right across a period
• Decreases down a group of representative
elements
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H2S _
#e-=6+2=8 MSM
CHCl3
#e-=6+1+7(3)=28
CL
HCCl
CL
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Chemical Bonds
• Atomic model
• Different kinds of bonds
• What is electronegativity
• Lewis dot structures, VSEPR, bond
hybridization
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Let's Recall
ÿ-bond
A sigma bond (symbol: ÿ) is a covalent bond
formed via linear overlap of two orbital's
ÿ-bond
A pi bond (symbol: ÿ) is a covalent bond
ÿ bond
formed via parallel overlap of two orbital's
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ÿ-bond
• The covalent bond formed due to overlapping of atomic orbital
along the inter nucleus axis is called ÿ-bond. It is a stronger
bond and cylindrically symmetrical.
• Depending on the types of orbital's overlapping, the ÿ-bond is
divided into following types:
ÿs-s bond,
ÿp-p bond,
ÿs-p bond:
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ÿ-bond
•ÿs-s bond:
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ÿ-bond
•ÿp
-p
bond:
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ÿ-bond
•ÿs
-p
bond:
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ÿ-bond
• The covalent bond formed by sidewise
overlapping of atomic orbital's is called
ÿ- bond
• The electron density is present above
and below the inter nuclear axis
• It is relatively a weaker bond since the
electrons are not strongly attracted by
the nuclei of bonding atoms
H2 molecule
• The electronic configuration of hydrogen atom in the
ground state is 1s1
• In the formation of hydrogen molecule, two half filled
1s orbital's of hydrogen atoms overlap along the
inter-nuclear axis and thus by forming a ÿs-s bond.
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Cl2 molecule
• The electronic configuration of Cl atom in the ground
state is [Ne]3s2 3px 2 3py2 3pz1
• The two half filled 3pz atomic orbital's of two chlorine atoms
overlap along the inter-nuclear axis and thus by forming a ÿp-
p bond
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HCl molecule
• In the ground state, the electronic configuration of hydrogen
atom is 1s1
• And the ground state electronic configuration of Cl atom is
2 2 1
[Ne]3s2 3px 3py 3pcs
O2 molecule
• The electronic configuration of O in the ground state is [He]
2 1 1
2s2 2px 2py 2pz .
• The half filled 2py orbital's of two oxygen atoms overlap
along the inter-nuclear axis and form ÿp-p bond.
• The remaining half filled 2pz orbital's overlap laterally to
form a ÿp-p bond
• Thus a double bond (one ÿp-p and one ÿp-p ) is formed between two
oxygen atoms
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VSEPR
• Valencia
• Shell
• Electron Electron groups maximize
• Pair their distance from one
another to minimize their
• Repulsion repulsions
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Carbon Atom
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Hybridization
• The intermixing of two or more pure atomic orbital's of an
atom with almost the same energy to give same number of
identical and degenerate new type of orbital's is known as
hybridization
• The new orbital's formed are also known as hybrid
orbital's
• During hybridization, the atomic orbital's with different
characteristics are mixed with each other sp3d sp sp
2 sp3d
sp2
sp3d 3
3sp _
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sp3 Hybridization
• In sp3 hybridization, one 's' and three 'p' orbital's of almost equal
energy intermix to give four identical and degenerate hybrid orbital's
• These four sp3 hybrid orbital's are oriented in tetrahedral symmetry
ÿ
with 109 28' angle with each other
• The sp3 hybrid orbital's have 25% 's' character and 75% 'p' character
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Electron Configuration of C
should form s
bonds to only two
hydrogen atoms
bonds should be
2s at right angles to
one another
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sp3 Hybridization
2P 2P
2s 2s
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sp3 Hybridization
2P
2s
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sp3 Hybridization
2P
2 sp3
4 equivalent half-filled
orbitals are consistent
2s
with four bonds and
tetrahedral geometry
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Shapes of Orbitals
yes
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Shape of Nodal
orbitals
properties
sp hybrid
of orbitals
p + –
yes
+
s+p ++–
Shape of sp orbital
sp3 hybrid + –
Shape of sp orbital
sp hybrid
+
yes
h + c –
sp3
H—C s h C–
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Methane 3D shape
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Methane 3D shape
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ÿ-bond
•ÿ bond :
s -sp 3
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Structure of Ethane
C2H6
CH3CH3
ÿ-bond
• The covalent bond formed by sidewise
overlapping of atomic orbital's is called
ÿ- bond
• The electron density is present above
and below the inter nuclear axis
• It is relatively a weaker bond since the
electrons are not strongly attracted by
the nuclei of bonding atoms
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sp2 Hybridization
• Intermixing of one 's' and two 'p' orbital's of almost equal energy to give three
identical and degenerate hybrid orbital's is known as sp2 hybridization.
• The three sp2 hybrid orbital's are oriented in trigonal planar symmetry at angles
ÿ
of 120 • The sp2 to each other.
hybrid orbital's have 33.3% 's' character and 66.6% 'p'
character.
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sp2 Hybridization
• Intermixing of one 's' and two 'p' orbital's of almost equal energy to give three
identical and degenerate hybrid orbital's is known as sp2 hybridization.
• The three sp2 hybrid orbital's are oriented in trigonal planar symmetry at angles
ÿ
of 120 • The sp2 to each other.
hybrid orbital's have 33.3% 's' character and 66.6% 'p'
character.
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Structure of Ethylene
C2H4
H2C=CH2
planar
bond angles: close to 120°
bond distances: C—H = 110 pm
C=C = 134 pm
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sp2 Hybridization
2P 2P
2s 2s
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sp2 Hybridization
2P
2s
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sp2 Hybridization
2P 2P
2 sp2
3 equivalent half-filled
sp2 hybrid orbitals plus 2s
1 p orbital
left unhybridized
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sp2 Hybridization
p bonding in ethylene
2 sp2
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p bonding in ethylene
2P
2 sp2
sp Hybridization
• Intermixing of one 's' and one 'p' orbital's of almost equal energy to
give two identical and degenerate hybrid orbital's is called 'sp'
hybridization.
• These sp-hybrid orbital's are arranged linearly at 180ÿ
angle • They possess 50% 's' and 50% 'p' character
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sp Hybridization
• Intermixing of one 's' and one 'p' orbital's of almost equal energy to
give two identical and degenerate hybrid orbital's is called 'sp'
hybridization.
• These sp-hybrid orbital's are arranged linearly at 180ÿ
angle • They possess 50% 's' and 50% 'p' character
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Structure of Acetylene
C2H2
HC CH
linear
sp Hybridization
2P 2P
2s 2s
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sp Hybridization
2P
2s
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sp Hybridization
2P 2P
2sp _
2 equivalent half-filled
sp hybrid orbitals plus 2s
2 p orbital left
unhybridized
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sp Hybridization
s bond
2P
2sp _
1 of the 2 sp orbitals is
involved in as bond to hydrogen;
sp Hybridization
p bonds
2sp _
sp Hybridization
p bonds
2P
2sp _
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sp Hybridization
p bonds
2P
2sp _
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sp Hybridization: CO2
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sp Hybridization: CO2
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sp Hybridization: CO2
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sp Hybridization: N2
N.N.
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sp3d hybridization
•
In sp3d hybridization, one 's', three 'p' and one 'd' orbital's of almost equal energy
intermix to give five identical and degenerate hybrid orbital's, which are arranged
in trigonal bipyramidal symmetry • Among them, three are arranged in
trigonal plane and the remaining two orbital's are present above and below the
trigonal plane at right angles
• The sp3d hybrid orbital's have 20% 's', 60% 'p' and 20% 'd' characters
PCl5
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sp3d 2 hybridization
• Intermixing of one 's', three 'p' and two 'd' orbital's of almost same
energy by giving six identical and degenerate hybrid orbital's is called
sp3d 2 hybridization
• These six sp3d 2 orbital's are arranged in octahedral symmetry by
making 90 ÿangles to each other. This arrangement can be visualized
as four orbital's arranged in a square plane and the remaining two
are oriented above and below this plane perpendicularly
SF6
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sp 3d 2 hybridization
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sp3d 3 hybridization
• In sp3d 3 hybridization, one 's', three 'p' and three 'd' orbital's of
almost the same energy intermix to give seven sp3d3 hybrid
orbital's, which are oriented in pentagonal bipyramidal
symmetry • Five among the sp3d 3 orbital's are arranged in a
pentagonal plane by making 72ÿ of angles. The remaining are
arranged perpendicularly above and below this pentagonal plane
IF7
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2 linear
sp
Molecular Orbitals
MOs
MOs
• A constructive combination gives a bonding MO. This gives an
enhanced electron probability between the nuclei.
• The destructive combination gives an antibonding MO. This
interference produces a node between the nuclei.
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MOs
Two MOs exist for H2 :
• MO1= 1sH1 + 1sH2
– MO1 is constructive and therefore a bonding MO
– MO1 is lower energy
MOs
The type of electron distribution described in these MOs is called
sigma as in the localized electron model. MO1 and MO2 are
sigma (ÿ) molecular orbitals.
• In this molecule only the molecular orbitals are available for
occupation by electrons. The 1s atomic orbitals of the
hydrogen atoms no longer exist, because the H2 molecule –
a new entity – has its own set of new orbitals.
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MOs
The energy level of the bonding MO
is lower and more stable than that s1s *
of the antibonding MO. Since
molecule formation favors the
lowest energy state, this provides
the driving force for molecule s1s
formation of H 2 . This is called
probonding.
If two electrons were forced to
occupy the higher-energy MO Este
2
would be anti-bonding and the
lower energy of the separated
atoms would be favored.
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Quiz #1
• What is electron configuration? (2pts)
What is the electronic configuration?
• Write electron configuration for 14Si (2pnts)
write electronic configuration for 14Si
• In your words explain the reason for carbon
orbital hybridization. Describes
sp2 hybridization. (4pts)
In your own words, explain the reason for
carbon hybridization. Describe sp2 hybridization
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MOs
MOs
Molecular electron configurations can be written in much the
same way as atomic (electron) configurations. Since the H2
molecule has two electrons in the ÿ1s molecular orbital, the
2
electron configuration is: ÿ1s
• Each molecular orbital can hold two electrons, but the spins
must be opposite
• Orbitals are conserved ÿ The number of molecular orbitals
will always be the same as the number of atomic orbitals used
to construct them
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Bond Order
To indicate bond strength, we use the concept of bond order
- -
# of bonding e - # of antibonding e
Bond Order =
2
Example:
H2 has a bond order of 1
H2 - has a bond order of ½
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MOs
• Would H2 - be stable? –
(ÿ1s )2 ( ÿ1s*) 1
– The key idea is that H2 - would exist if it were a lower energy than its
separated parts. Two electrons are in bonding and one is in
antibonding. Since more electrons favor bonding H2 - is formed.
– This is also a good indicator of bond strength. H2 has a stronger bond
than H2 - . The net lowering of the bonding electrons by one is a direct
relationship to bond strength. H2 is twice as strong.
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Bond Order
Bond order is an indication of bond strength because it reflects
the difference between the number of bonding electrons and
the number of antibonding electrons
• Larger bond order means greater bond strength
• Bond order of 0 gives us a molecule that doesn't exist
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B2 Example
• Electron configuration?
• 1s2 2s2
2p1 • 1s2 does not bond
• 2s2 and 2p1 bond 2
2
(ÿ2s) (ÿ2s*)2 (ÿ2p) •
• Bond order?
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Exceptions
Example Problem
2
O2 : (ÿ2s) 2 (ÿ2s*)2 (ÿ2p) (ÿ2p) 4 (ÿ2p*)2 BO=2 4
+ 2
O2 (ÿ2s) 2 2 (ÿ2s*)2 (ÿ2p) : (ÿ2p*)3(ÿ2p*)1 BO=2.5 (ÿ2p) 4
2
O2 - (ÿ2s*)2 (ÿ2p) : (ÿ2s) BO=1.5 (ÿ2p)
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Example Problem
Use the molecular orbital model to predict the bond order for
Ne2 and P2
Bonding in heteronuclear
diatomic molecules
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Heteronuclear Molecules
• When dealing with different atoms within diatomic molecules we
can still use the MO model to determine bond order
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NO example
• Electron configuration?
• MO for the molecule
• The valence electrons from
both atoms fill in the order
expected by the model
• Bond order?
• The bond order is 2.5
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Heteronuclear Diatomics
Example Problem
O to Ne
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O to Ne