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Organic Chem
1. Which of the following is not a characteristic of organic compounds?
A. They usually have low melting points.
B. They usually are only slightly soluble or insoluble in water.
C. If water soluble they seldom conduct an electric current.
D. Bonds which bind the atoms together are nearly always ionic.
2. Which of the following are the basic components of all living things?
A. atom B. matter C. molecules D. organic compounds
4. Organic compounds having the same molecular formula but different arrangement of atoms bonded together
are called
A. functional groups B. isomers C. hydrocarbons D. polymers
5. Properties and reactions of organic compounds are determined by a particular atom or group of atoms in the
molecule. This group of atoms is called _____.
A. functional group B. class/family C. type formula D. hydrocarbons
6. It refers to hydrocarbon that have double or triple covalent bonds between adjacent carbon atoms.
A. saturated B. unsaturated C. petroleum D. natural gas
9. It refers to a fossil fuel formed when layers of buried plants and animals are exposed to intense heat and
pressure over thousands of years.
A. methane B. natural gas C. saturated hydrocarbons D. unsaturated hydrocarbons
10. It refers to a chemical compound with the chemical formula of CH4 and is the simplest alkane and the main
component of natural gas.
A. methane B. natural gas C. saturated hydrocarbons D. unsaturated hydrocarbons
11. Carbon has four valence electrons that it can share with hydrogen only.
A. TRUE B. FALSE
12. Carbon is unique because it can form multiple bonds and straight, branched, and cyclic or ring structures.
A. TRUE B. FALSE
13. Most fuels are obtained from petroleum and crude oil.
A. TRUE B. FALSE
Numbers 14 to 16 are structures of some organic compounds. Be able to identify the functional group present and
determine the class of organic compound it belongs
21. The hydrocarbon where the four valence electrons are shared with other atoms is called an _____.
A. alkane B. alkene C. alkyne D. aromatic
22. Which 2 statements are true about carbon’s ability to form bonds?
A. Carbon atoms have four valence electrons. Carbon atoms can form stable bonds with each other.
B. Carbon atoms always form three covalent bonds. Carbon atoms can form stable bonds with each other.
C. Carbon atoms always form four covalent bonds. Carbon atoms can form stable single, double or triple
bonds with each other.
D. Carbon atoms always form three covalent bonds. Carbon atoms can form stable bonds with each other.
23. Which molecule co'ntains a carbon-carbon double bond?
A. Ethane B. Ethene C. Ethyne D. Ethyl alcohol
25. An alkyne with 6 carbons will have how many hydrogen atoms?
A. 8 B. 10 C. 12 D. 14
26. These are organic compounds in which two hydrocarbon groups are bonded to the same atom of oxygen.
A. alcohol B. aldehyde C. ester D. ether
27. Which of the following class of organic compounds contain a carboxyl group?
A. Aldehydes B. carboxylic acids C. esters D. ketones
29. In the addition of HX to a double bond, the hydrogen goes to the carbon that already has more hydrogens is a
statement of
A. Hund's rule B. Markovnikov's rule C. Huckel rule D. Saytzeff rule
Test II. Give one specific example of each of the following class of organic compound, then draw its structure and
name the compound.
1. secondary alcohol 2. amide 3. Aldehyde 4. Carboxylic acid 5. An ester 6. ketone
Organic Chemistry
• study of carbon, the compounds it makes, and the reactions it undergoes
• over 16 million carbon-containing compounds are known
• because the C-C single bond (348 kJ mol-1) and the C- H bond (412 kJ mol-1) are strong,
carbon compounds are stable
• carbon can form chains and rings
Hydrocarbons
• Hydrocarbons are organic molecules consisting of only carbon and hydrogen
• Many organic molecules, such as fats, have hydrocarbon components
• Hydrocarbons can undergo reactions that release a large amount of energy
Isomers
• Isomers are compounds with the same molecular formula but different structures and properties
- Structural isomers have different covalent arrangements of their atoms
- Cis-trans isomers have the same covalent bonds but differ in spatial arrangements
- Enantiomers are isomers that are mirror images of each other
• Enantiomers are important in the pharmaceutical industry
• Two enantiomers of a drug may have different effects
• Usually only one isomer is biologically active
• Differing effects of enantiomers demonstrate that organisms are sensitive to even subtle
variations in molecules
Alkynes
• used in welding torches
General Properties of Org Chem
1. Can be isolated from natural sources or can be reared in the laboratory.
2. Contains C,H, O, N, S, X, P
3. Has complex structures and solids have high molecular weight.
4. Non electrolytes and non polar.
5. Properties are determined by functional groups.
6. Insoluble in water and soluble in organic solvents.
7. Flammable/combustible.
8. Low melting points and boiling points in comparison to the inorganic compounds.
9. Organic acids and bases are less stronger and thus they have a limited dissociation in an aqueous
medium.
10. They exhibit the phenomenon of isomerism.
11. Volatile in nature.
Halogens (F2, C|2, Br2, 12,) can all add to a hydrocarbon to form an alkyl halide.
• When naming the halogen the -ine ending of the halogen name is replaced by -o
• Fluorine becomes fluoro
• Chlorine becomes chloro
• Bromine becomes bromo
• lodine becomes iodol
Aliphatic Alcohols
An alcohol has a hydrogen replaced by a hydroxyl (-OH) group.
- The name of the hydrocarbon that was substituted determines the name of the alcohol.
- The alcohol is named using the hydrocarbon name and adding the suffix -ol.
• If methane is substituted with an OH group it becomes methanol
• If a pentane group is substituted with an OH group it is pentanol.
• Four different alcohols. The IUPAC name is given above each structural formula, and the common
name is given below.
• The OH group is polar and short chain alcohols are soluble in both nopolar alkanes and water.
- If an alcohol contains two
OH groups it is a diol
(sometimes called a glycol).
- An alcohol with three OH groups is called a triol (sometimes called a glycerol).
Aldehydes and Ketones
-An aldehyde has a carbonyl group (carbon double bonded
to an oxygen) attached to a terminal carbon atom
- A ketone has a carbonyl group attached to an internal
carbon atom.
• The carbonyl group (A) is present in both aldehydes
and ketones, as shown in (B). (C) The simplest example
of each, with the IUPAC name above and the common
name below each formula.
Carboxylic Acids and Esters
Organic acids are those acids that are derived from living organisms, usually from metabolism, but
sometimes as a defense mechanism.
- Long chain organic acids are known as fatty acids
These are also called carboxylic acids as they contain the carboxyl functional group (COOH)
• One oxygen is double bonded to the carbon and the other is bonded to the carbon and to the
hydrogen both with single bonds.
These red ants, like other ants, make the simplest of the organic acids, formic acid. The sting of bees,
ants, and some plants contains formic acid, along with some other irritating materials. Formic acid is
нсоОн.
IUPAC Rules
Rule 1: Replace the alkane suffix -ane with the suffix -ene
Rule 2: Select as the parent carbon chain the longest continuous chain of carbon atoms that contains
both carbon atoms of the double bond.
Rule 3: Number the parent carbon chain beginning at the end nearest to the double bond. If the
double bond is equidistant from both ends of the parent chain, begin numbering from the end closer to
a substituent.
Rule 4: Give the position of the double bond in the chain as a single number, which is the lower-
numbered carbon atom participating in the double bond.
Rule 5: Use the suffixes -diene, -triene, -tetrene, and so on when more than one double bond is
present in the molecule.
Rule 7: In substituted cycloalkenes with only one double bond, the double-bonded carbon atoms are
numbered 1 and 2 in the direction (clockwise or counterclockwise) that gives the first-encountered
substituent the lower number.
Rule 8: In cycloalkenes with more than one double bond within the ring, assign one double with
numbers 1 and 2 and the other double bonds the lowest numbers possible.
pH and Buffers
Uses/functions
• Provide energy (spares proteins & fatty acids) and stored energy
• Flavorings, sweetener.
• Dietary fiber
• Biological recognition
• Form part of the structure in living organisms (cellulose & chitin)
•Polyhdroxy aldehydes or polyhydroxy ketones
•Hydrates of carbon Cn(H2O)n applicable to simple sugars
•Obtained from plants and animals
•Names end in “ose” except glycogen or generally saccharide
Sources
Plants
6 CO2 + 6 H2O → C6H12O6 + 6 O2
•Simple sugars
•Polysaccharides (starch)
•Cellulose
•Glycosides
Animals
•Glycogen
Reactions
1. Hemiacetal and acetal formation
2. Oxidation
3. Ester formation (Phosphorylation)
4. Reduction (sugar alcohols)
5. Elongation and degradation
Classifications
A. Based on functional groups
1.Aldose
2. Ketose
Properties
• Polar (Universal solvent)
• Adhesion
• Cohesion
• Capillary Action
• Density
• High heat capacity
Importance
• Water is the most important nutrient for survival. (University of Florida's Institute of Food and
Agricultural Sciences Extension)
• Most chemical reactions inside the body occurs in aqueous environment.
• Losing 1/10 of the water inside the organism can be fatal.
1.Regulation of
b.Body temperature
c.pH
2. Hydrolysis reactions (energy production)
3. Digestion
4. Joint lubrication
5. Waste excretion
6. Homeostasis
• Homeostasis is the process that the body uses to maintain stability. the lungs are involved in
respiration, exchanging carbon dioxide in the bloodstream for oxygen from the air. the pancreas
regulates blood-glucose levels with the release of insulin or glucagon. the hypothalamus detects
how much water is present in the blood, and controls how much water the kidneys hold or excrete
in urine. the skin controls body temperature in two ways. it releases sweat to cool the body when
its temperature is too high, and it flattens or stands up body hairs to release heat or insulate the
body, depending on what the body needs.
Lipids
• Non-polar organic molecules containing carbon, hydrogen, and oxygen mainly hydrocarbon chain
or fatty acids (heterogeneous)
• Usually fats (animals) and oils (plants)
• Energy rich
• Stored in the adipose tissues
• Mechanical barrier of cells –cell membrane
• Precursor or derived
1. Non-saponifiable lipids are those that can not be broken down into smaller molecules by hydrolysis,
e.g. cholesterol, prostaglandins, etc.
2. Saponifiable lipids are those that can be broken down like waxes, triglycerides (non polar),
sphingolipids, glycerophosphilipids, and phospholipids (polar).
•Basic component are fatty acids
1.Simple Lipids
Fats: esters of fatty acids with glycerol
Waxes: esters of fatty acids with higher MW monohydric alcohols
2. Complex Lipids
Phospholipids
Glycolipids (glycosphingolipids)
Complex lipids (lipoproteins)
Phospolipids
• Phospholipids are the main constituents of cell membranes. They resemble the triglycerides in
being ester or amide derivatives of glycerol or sphingosine with fatty acids and phosphoric acid.
PROTEINS
ENZYMES AND HORMONES
Proteins that catalyze biochemical reactions like
digestion and metabolism (anabolism and catabolism)
Enzymes catalyze specific specific reactions and
specific to its substrates. Substrates are the reactants
that undergo chemical reaction.
ENZYMES Enzymes have an active site where the substrate binds
to or interact to effect chemical reaction (breakdown,
rearrangement, synthesis)
Enzymes are not changed or used up in the chemical
reaction.
LOCK AND KEY MODEL
shape of the active site and substrate complement in such a
way that the substrate fits into the binding site perfectly.
Enzyme –
Substrate
interaction
INDUCED FIT
the enzyme active site forms in response to substrate binding.
Enzyme –
Substrate
interaction
COMPETETIVE INHIBITION
https://opentextbc.ca/biology/chapter/18-1-types-of-
hormones/
HORMONES
https://opentextbc.ca/biology/chapter/18-1-types-of-
hormones/
HORMONES
https://opentextbc.ca/biology/chapter/18-1-types-of-
hormones/
HORMONES
https://opentextbc.ca/biology/chapter/18-1-types-of-
hormones/
https://www.youtube.com/watch?v=vLdNX5Te1Xo
intro
https://www.youtube.com/watch?v=8TveCTps_Xw
complete
PROTEINS
COMPOSITION, FUNCTIONS, STRUCTURE AND PROPERTIES
PROTEINS
• Makes up 20% of the human body.
• Large complex molecules that are critical for normal functioning of cells.
• Essential for the structure, function, and regulation of the body’s tissues and
organs.
• Made up of smaller units called amino acids held together by peptide bonds to
form long chain.
Amino Acid Structure and Classification
Amino Acid Structure and Classification
Amino Acid Structure and Classification
Amino Acid Structure and Classification
Non-Protein Amino acids are alpha amino acids found in cells but not in proteins.
• Citrulline
• Ornithine
• Carnitine
• Selenocysteine
• Pyrrolysine
Amino Acid Structure and Classification
Amino Acid Structure and Classification
Amino Acid Structure and Classification
Amino Acid Structure and Classification
Amino Acid Structure and Classification
Amino Acid Structure and Classification
Building Polypeptides
Building Polypeptides
Protein Structure
• Primary
• Secondary
• Tertiary
• Quaternary
Protein Structure
• Primary structure
Protein Structure
• Secondary structure
Protein Structure
• Tertiary structure
Protein Structure
• Quaternary structure
Protein Structure
• https://www.youtube.com/watch?v=1peFJ_-N7V8
• https://www.youtube.com/watch?v=hok2hyED9go
Protein Structure Classification
• Globular (transport, messaging/signaling, catalysis, immune response)
• Fibrous (structure/protection, joint strength/mobility)
• Membrane (receptors, channels)
Protein Structure Classification
• Globular – spherical in shape and dissolves in water. Secondary to quaternary
structures.
Examples:
Blood, enzymes, hormones
Protein Structure Classification
• Fibrous are elongated strand-like structures usually in the form of rods or wires.
Insoluble in water and predominantly in secondary structure.
Examples:
Keratin, collagen, elastin, fibroin
Denaturation
When a protein loses its higher-order structure (2o, 3o, 4o)
1. Temperature
2. pH
3. Chemicals
4. Toxins/venom
5. Stirring/agitation
AP*
Chapter 5
Gases
AP Learning Objectives
▪ LO 2.12 The student can qualitatively analyze data regarding real gases to
identify deviations from ideal behavior and relate these to molecular
interactions. (Sec 5.8)
▪ LO 2.15 The student is able to explain observations regarding the solubility of
ionic solids and molecules in water and other solvents on the basis of particle
views that include intermolecular interactions and entropic effects. (Sec 5.8-5.9)
▪ LO 3.4 The student is able to relate quantities (measured mass of substances,
volumes of solutions, or volumes and pressures of gases) to identify
stoichiometric relationships for a reaction, including situations involving limiting
reactants and situations in which the reaction has not gone to completion. (Sec
5.4)
▪ LO 5.2: The student is able to relate temperature to the motions of particles,
either via particulate representations, such as drawings of particles with arrows
indicating velocities, and/or via representations of average kinetic energy and
distribution of kinetic energies of the particles, such as plots of the Maxwell-
Boltzmann distribution. (Sec 5.6)
Section 5.1
Pressure
A Gas
▪ Uniformly fills any container.
▪ Easily compressed.
▪ Mixes completely with any other gas.
▪ Exerts pressure on its surroundings.
Pressure
force
Pr essure =
area
Barometer
▪ Device used to measure
atmospheric pressure.
▪ Mercury flows out of the tube
until the pressure of the
column of mercury standing
on the surface of the mercury
in the dish is equal to the
pressure of the air on the rest
of the surface of the mercury
in the dish.
Manometer
▪ Device used for
measuring the
pressure of a gas in
a container.
Collapsing Can
760 torr
( 2.5 atm )
= 1.9 10 3
torr
1 atm
101,325 Pa
( 2.5 atm )
= 2.5 10 5
Pa
1 atm
Boyle’s Law
▪ Pressure and volume are inversely related (constant T,
temperature, and n, # of moles of gas).
▪ PV = k (k is a constant for a given sample of air at a
specific temperature)
P1 V1 = P2 V2
Boyle’s law
EXERCISE!
9.88 L
Charles’s Law
▪ Volume and Temperature (in Kelvin) are directly related
(constant P and n).
▪ V=bT (b is a proportionality constant)
▪ K = °C + 273
▪ 0 K is called absolute zero.
V1 V2
=
T1 T2
Charles’s Law
EXERCISE!
0.849 L
Avogadro’s Law
▪ Volume and number of moles are directly related
(constant T and P).
▪ V = an (a is a proportionality constant)
n1 n2
=
V1 V2
EXERCISE!
76.3 L
PV = nRT
(where R = 0.08206 L·atm/mol·K, the universal gas constant)
EXERCISE!
3.27 mol
EXERCISE!
114 atm
EXERCISE!
696°C
V=
nRT
=
(1.000 mol)( 0.08206 L atm/K mol )( 273.2 K ) = 22.42 L
P 1.000 atm
EXERCISE!
3.57 g
g L atm
dRT L mol K ( K)
g
Molar mass = = =
P ( atm ) mol
▪ d = density of gas
▪ T = temperature in Kelvin
▪ P = pressure of gas
▪ R = universal gas constant
EXERCISE!
1.70 g/L
EXERCISE!
2.00 atm
3.00 atm
9.00 L
3.00 L
EXERCISE!
▪ Additional AP References
▪ LO 5.2 (see Appendix 7.2, “Thermal Equilibrium, the Kinetic Molecular Theory, and the Process of Heat”)
Section 5.6
The Kinetic Molecular Theory of Gases
CONCEPT CHECK!
CONCEPT CHECK!
CONCEPT CHECK!
CONCEPT CHECK!
CONCEPT CHECK!
CONCEPT CHECK!
CONCEPT CHECK!
CONCEPT CHECK!
CONCEPT CHECK!
CONCEPT CHECK!
Ne
VNe = 2VAr
Which of the following best
represents the mass ratio of Ar
Ne:Ar in the balloons?
1:1
1:2
2:1
1:3
3:1
Copyright © Cengage Learning. All rights reserved 59
Section 5.6
The Kinetic Molecular Theory of Gases
CONCEPT CHECK!
CONCEPT CHECK!
CONCEPT CHECK!
5.43 L
3RT
urms =
M
R = 8.3145 J/K·mol
(J = joule = kg·m2/s2)
T = temperature of gas (in K)
M = mass of a mole of gas in kg
Effusion
Diffusion
2
[ Pobs + a (n / V ) ] (V − nb) = nRT
Pideal Videal
Air Pollution
▪ Two main sources:
▪ Transportation
▪ Production of electricity
▪ Combustion of petroleum produces CO, CO2, NO, and
NO2, along with unburned molecules from petroleum.
O(g ) + O2 (g ) ⎯⎯
→ O3 ( g )
S(in coal) + O2 ( g ) ⎯⎯
→ SO2 ( g )
2SO2 (g ) + O2 ( g ) ⎯⎯
→ 2SO3 ( g )
SO3 (g ) + H2O( l ) ⎯⎯
→ H2SO 4 (aq )