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Protecting Groups

Krishna P. Kaliappan
Department of Chemistry
Indian Institute of Technology-Bombay
Mumbai 400 076 INDIA
http://www.chem.iitb.ac.in/~kpk
kpk@chem.iitb.ac.in

10/26/20 CH (401) slides should not be used for commercial purposes


Protecting Groups
What are protecting groups?
Groups, which are temporarily attached to a functional group
Make these functional groups not to react under certain reaction
conditions in subsequent steps.
Cleaved after its job is done

Why do you need protecting groups?

When a molecule has more than one functional group, then there is a
likely possibility that functional groups interfering with each other
while carrying out a reaction.

When principles of selectivity can’t be applied, then protection of one


functional group is really necessary to carry out a reaction on the
other functional group.

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 2


Protecting Groups
Why do you need protecting groups?

O O

CO2Et CH2OH

O O
O O

CO2Et CH2OH

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 3


Protecting Groups
Drawbacks

1. Two additional steps are required.

2. One for the introduction of the protecting group and the other for
removing it.

3. So, more the number or protecting groups in your synthetic


scheme, more the number of steps.

The best protecting group is “NO PROTECTING GROUP”

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 4


Protecting Groups
What is orthogonal protecting group strategy?

When more than one functional group of similar type, with very little
difference in terms of reactivity, present in the molecule, selective
protection of one can be achieved in the presence of other by taking
advantage of steric effects, stereoelectronic effects etc.,

The development of such orthogonal protecting group strategies


makes it possible to remove one set of protecting groups, in any
order, using reagents and conditions that do not affect the protecting
groups in other sets.

This orthogonal protecting group strategy is regularly utilized in the


synthesis oligosaccharides where more number of hydroxyl groups
with subtle difference in reactivity are present.

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 5


Protecting Groups
Types of Protecting Groups

Permanent: These are stable protecting groups, survives many steps


in a long synthetic route (early introduction & late removal). These
protecting groups are used for functional groups which require no
manipulation for most of the steps

Temporary: These protecting groups (as the name suggests) should be


selectively installed and removed as and when required without
affecting the permanent protecting groups.

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 6


Protecting Groups
Criteria for selecting protecting groups

Should be cheap & commercially available

Should be easily introduced under milder conditions

Should not create any additional stereocenters

Should be stable throughout the reaction, work up and purification

Should be easily removed under milder conditions

Byproducts should be easily separated from the required product

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 7


Functional Groups

Hydroxy

Functional
Groups

Carbonyl Amines

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Hydroxyl Group

Primary

Phenols Secondary

Hydroxyl

DIols Tertiary

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Carbonyl Group

Carboxylic acids

Carbonyl

Aldehydes Ketones

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Amines

Aliphatic Primary

Amines

Aliphatic Secondary Aromatic

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Protecting Groups for Alcohols

12
PG for Alcohols
Introduction of protecting groups

R O H + X PG R O PG + HX

Removal of protecting groups

R O PG + HY R O H + Y PG

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 13


PG for Alcohols

Alkyl Ethers

Silyl Ethers Alcohols Benzyl Ethers

Esters

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PG for Alcohols

ROMe, ROMOM, ROMEM, ROBOM, ROTHP, ROEE

Alkyl
ethers

ROBn, ROPMB ROTr


RONAP, ROMeTr, Benzyl Esters ROAc, ROAcCl, ROBz,
Alcohols
RO-o-NO2Bn, ethers ROPiv, ROCOCF3
RO-p-NO2Bn,
Silyl
ethers

ROTMS, ROTES ROTIPS, ROTBS, ROTBDPS

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 15


Alkyl Ethers

Methyl Ether

EE Ether MOM Ether

Alkyl
Ethers

THP Ether MEM Ether

BOM Ether

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 16


Benzyl Ethers

Benzyl Ether

o-NO2Bn Ether PMB Ether

Benzyl
Ethers

OMe-Tr Ether NAP Ether

Tr Ether

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 17


Silyl Ethers

TMS Ether

TBDPS Ether TES Ether

Silyl
Ethers

TBDMS Ether TIPS Ether

IPDMS Ether

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Esters

Acetate

Pivalate ester Chloroacetate

Esters

Trifluoroacetate Dichloroacetate

Trichloroacetate

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Esters
Benzoate

Troc Boc

Esters

Alloc CBz

Fmoc

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1,2-Diols

Acetonide

Cyclic carbonate Cycloalkylidene

1,2-Diols

Di-t-Butylsilylene Benzylidene

p-Methoxybenzylidene

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 21


Alkylethers

NaH, MeI, THF

OR
Ag2O, MeI NaH, CH3OCH2Cl, THF

OR OR

CH2N2 (Phenols) DIEPA, CH3OCH2Cl, THF


ROMe Alcohols ROMOM

BBr3, DCM HCl, THF

OR OR

HCl, ROH AcCl, EtOH

OR
TMSCl/NaI

Difficult to cleave except for phenols

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 22


Alkylethers

Benzyloxymethyl ether (BOM)


NaH, CH3OCH2CH2OCH2Cl, THF
OR
DIPEA, PhCH2OCH2Cl, DCM
DIPEA, CH3OCH2CH2OCH2Cl, THF

ROBOM Alcohols ROMEM


H2, Pd-C, EtOH ZnBr2
OR OR

Li, Liq. NH3 TiCl4

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 23


Alkylethers

, PPTS, DCM
O O , PTSA, DCM

ROTHP Alcohols ROEE

PPTS, EtOH PPTS, EtOH

OR OR

Amberlyst H-15, MeOH Amberlyst H-15, MeOH

Creates one more chiral center

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 24


Benzylethers
NaH, BnBr, THF
OR
KH, BnCl, THF NaH, PMBCl, THF

OR OR
NH NH

Cl3C OBn , CSA Cl3C OPMB , CSA


ROBn Alcohols ROPMB

H2, Pd-C, EtOH H2, Pd-C, EtOH


OR OR

Li, Liq. NH3 Li, Liq. NH3

OR OR

BBr3, DCM DDQ, MeOH


OR
Benzyl ethers are stable
CAN, MeOH

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 25


PMB ethers
NaH, THF
RO
ROH OMe
Cl

MeO

PMP
OH OPMB DDQ O O
R DCM, MS
R

CAN DIBAL-H
OR
DDQ
PMBO OH
OH OH
R
R

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 26


Benzyl Ethers
Selective for primary alcohols

Highly sensitive to acid


2-Naphthylmethyl ether (NAP)

Cl
NaH, , THF
Ph3CCl, Et3N, THF

RONAP Alcohols ROTr


H2, Pd-C, EtOH Mild Acid R1
OR
Li, Liq. NH3

NAP ethers could be cleaved R2 Tr


selectively in the presence of Bn
ethers

R3
CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 27
Nitrobenzyl ethers
o-Nitrobenzyl ethers p-Nitrobenzyl ethers

Cl Cl
NaH, , THF NaH, , THF
NO2 O2N
RO-oNb Alcohols RO-pNb

Photolysis @ 320nm H2/Pd-C


OR
DDQ
OR
Electrochemical
o-Nitrobenzyl ethers are cleaved conditions
under photochemical conditions

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 28


Protection of Phenols
Most of the protecting groups used for alcohols are applicable for
phenols.
Common phenolic protecting groups are:
OMe OtBu O OBn

Methylether t-Butylether Allylether Benzylether

R1 O O
R2
Si R
O R3 O R O O O OR

Silylethers Phenyl Phenyl


esters carbonates Acetals

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 29


Methyl Ethers
Protection

NaOH, Me2SO4
OH OR OMe
K2CO3, MeI

OR
CH2N2
Deprotection

BBr3, DCM
OMe OR OH

EtSNa, DMF

OR
TMSI
OR
HCl, MeOH

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 30


TMS and TES Ethers
TMS Ether TES Ether

Easy to introduce Easy to introduce

Used for transient protection More stable than TMS

Very labile to acid and water Selectively cleavable

TMSCl, Py, DMAP TESCl, Py, DMAP


OR OR
TMSCl, Im, DMAP, DCM TESCl, Im, DMAP, DCM
OR OR
TMSOTf, DIPEA, DCM TESOTf, DIPEA, DCM
ROTMS Alcohols ROTES
AcOH/H2O, 15 h
dil. Acid OR
F- source

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 31


TIPS and TBS Ethers
TIPS Ether TBS Ether

Easy to introduce Selective protection of 1o alcohols

More stable than TMS/TES Stable to base and mild acid

TBSOTf is a good reagent for 2o


alcohols
TIPSCl, Py, DMAP
TBDMSCl, Py, DMAP
OR OR
TIPSCl, Im, DMAP, DCM TBDMSCl, Im, DMAP, DCM
OR OR
TIPSOTf, DIPEA, DCM TBDMSOTf, DIPEA, DCM
Alcohols ROTBS
ROTIPS
AcOH/H2O, 15 h Fluorides like
OR TBAF, KF, HF.Py, CsF
F- source

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 32


TBDPS ethers
TBDPS Ether

Stable to base and acid

Selective for primary alcohols

TMS/TES/TIPS can be selectively removed in the presence of TBS/TBDPS

TBS can be selectively removed in the presence of TBDPS by acid


TBDPSCl, Py, DMAP
OR
TBDPSCl, Im, DMAP, DCM
OR
TBDPSOTf, DIPEA, DCM
Alcohols ROTBDPS
Fluorides like
TBAF, KF, HF.Py, CsF
CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 33
Esters
O R1
R OH R
O
Formation: Activated acid, base, DMAP, solvent

Activated acid: Acid Chlorides, Anhydrides, Activating agents

Acid chloride: SOCl2, Oxalylchloride, PCl5

Activating agents: CDI, DCC, HOBT, NHS, PySSPy, Mukaiyama’s reagent

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 34


Acetates
O R1
R OH R
O

Properties: Stable to acid and mild base


Not compatible with strong nucleophiles
such as organometallic reagents

Formation: Ac2O, pyridine


Acetyl chloride, pyridine

Cleavage: K2CO3, MeOH, reflux KCN, EtOH, reflux


NH3, MeOH LiOH, THF, H2
Enzyme hydrolysis (Lipase)

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 35


Pivaloates
O C
R OH R
O

Properties: Selective for primary alcohols


Removed with mild bases

Formation: t-Butylacetyl chloride, Py


t-Butylacetic anhydride, Base

Cleavage: K2CO3, MeOH


LAH, Et2O

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 36


Chloroacetates
O
R OH R Cl
O

Properties: Removed with Zn dust or thiourea

Formation: Chloroacetyl chloride, Base

Cleavage: Zn dust

Thiourea

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 37


Trifluoroacetates
F
F
O
R OH R F
O

Properties: Removed with base

Formation: Trifluoroacetyl chloride, Base


Trifluoroacetic anhydride, Base

Cleavage: K2CO3, MeOH

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 38


Benzoates

O
R OH R
O

Properties: More stable than acetates wrt hydrolysis

Formation: Benzoyl chloride, Base


Benzoyl cyanide, Base

Benzoic anhydride, Base

Cleavage: K2CO3, MeOH


KCN, MeOH

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 39


Protecting Groups for Diols

40
1,2-Diols
R2 R3
OH Aldehyde or O O
R1
R Ketone, H+
OH R R1

Isopropylidenes (acetonides)

HO OH Acid O O

R1 R2 Acetone or
R1 R2
OMe OMe
or
OMe

Cleavage Mild aqueous acid

1,2-acetonide formation is usually favored over 1,3-acetonides

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 41


1,2-Diols
Cycloalkylidene ketals

n
HO OH Acid O O

R1 R2
or R1 R2

O O

Cyclopentylidenes are slightly easier to cleave than acetonides


Cyclohexylidenes are slightly harder to cleave than acetonides

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 42


1,2-Diols
Benzylidene acetals
Ph
HO OH
Acid O O

R1 R2 CH(OMe)2 CHO
R1 R2

or

Cleavage: Acid hydrolysis or hydrogenolysis

1,3-Benzylidene formation is usually favored over 1,2-Benzylidene

Benzylidenes are usually hydrogenolyed slower than benzyl ethers or


olefins

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 43


1,2 & 1,3-Diols
Benzylidene acetals & Acetonides

Ph
OH
PhCHO O
O
CH2OH ZnCl2

PhCHO
OH
CH2OH ZnCl2 O Ph
O

OH
Acetone TrO
TrO
O
PPTS, CuSO4 O OH
OH OH

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 44


1,2-Diols
p-Methoxybenzylidene acetals
Ph
HO OH
Acid O O

R1 R2 CH(OMe)2 CHO
R1 R2

or

OMe OMe

Cleavage: Acid hydrolysis or hydrogenolysis or DDQ or CAN

Hydrolyzed about 10 times faster than regular benzylidenes

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 45


Other Reactions
Ph
TiCl4 HO OBn
O O
NaCNBH3
MeO2C CO2Me
MeO2C CO2Me

O Br
O NBS
Ph O Ph O
O OMe O OMe
HO CH3CN HO
OH OH

PMP
OH OPMB DDQ PMBO OH
O O DIBAL-H
R DCM, MS R
R

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 46


1,2-Diols
Cyclic Carbonates
O
HO OH Im2CO O O
R1 R2
R1 R2

Formation: Im2CO or phosgene or triphosgene

Cleavage: Removed with bases

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 47


Protecting Groups for Carbonyls

48
PG’s for Aldehydes/Ketones

O O O O O O O O
R1 R2 R1 R2 R1 R2 R1 R2

Dimethyl 1,3-Dioxolane 1,3-Dioxane 2,2-Dimethyl


acetal 1,3-dioxane

S S S S O S
S S
R1 R2 R1 R2 R1 R2
R1 R2
S,S-Dimethyl 1,3-Dithiolane 1,3-Dithiane 1,3-Oxathiolane
thioacetal

Order of Reactivity
Aldehydes > acyclic ketones = cyclohexanones > cyclopentanones >
α,β-unsaturated ketones = α,α-substituted ketones > aromatic ketones
CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 49
Dimethyl acetals/ketals

O
O O
R1 R2 R1 R2

Formation Cleavage

1. MeOH, Dry HCl 1. Acetone, PTSA

2. Sc(OTf)3, CH(OMe)3 2. TFA, CHCl3, H2O

MeO OMe
3. , PTSA

4. TMSOMe, TMSOTf, DCM

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 50


Dimethyl acetals/ketals
O
O
Acetone
O
D-Glucose
ZnCl2
HO O
O

MeO OMe
OH OH , DME O OH
HO O
OH O
SnCl2
OH OH OH O

TiCl4 OMe
O O O
MeOH, Et3N OMe

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 51


1,3-Dioxolones/1,3-Dioxanes

O
O O O O O O
R1 R2 R1 R2 R1 R2 R1 R2

Formation Cleavage
n
HO OH , Toluene, PTSA 1. Acetone, PPTS, H2O, Heat

n 2. 1M HCl, THF
TMSO OTMS , TMSOTf, DCM
3. Me2BBr, DCM, -78 oC
-78 oC

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 52


1,3-Dioxolones/1,3-Dioxanes
O O
O O
O O
HO OH OH OH
PTSA, Toluene PTSA, Toluene

O O
O
HO OH

O PTSA, Toluene O

Double bond increases the electron density at the carbonyl


carbon of the Ɑ,ℬ-unsaturated ketones

HO OH
O
O PTSA, Toluene
O

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 53


1,3-Dioxolones/1,3-Dioxanes
TMSO OTMS
O
O TMSOTf, DCM
-78 oC O

This procedure developed by Noyori, at lower temperature, the


double bond doesn’t migrate.

O H O O HO
O
HO OH

PTSA, Toluene
CH3 CH3

Steric hindrance could be used to selectively protect one of the


carbonyl groups

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 54


1,3-Dithiolones/1,3-Dithianes
HS SH
S
O BF3.OEt2, DCM
-20 oC S

Since thioacetals are quite stable towards hydrolysis, no need to


remove water from the reaction mixture.

Double bond migration is also not observed as this reaction is


done at a lower temperature

S S
TFA S
MeO S O
O
OHC
MeO O O

Selective removal of acetal is possible in the presence of


thioacetal

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 55


1,3-Dithiolones/1,3-Dithianes

Ra-Ni, H2
HgCl2, CaCO3 S
EtOH
O Acetone S

Cleavage of dithianes and dithiolanes:

Hg(ClO)4, MeOH, CHCl3, 25 oC


NBS, acetone, 0 oC
I2, DMSO
CAN, aq. CH3CN
m-CPBA, Ac2O
DDQ, aq. CH3CN

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 56


1,3-Dithioxolones/1,3-Dithianes

1,3-dioxolanes and 1,3-dioxanes can be readily converted into


1,3-dithiolanes and 1,3-dithianes

O O SH SH S S
BF3.Et2O

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 57


1,3-Dithioxolones/1,3-Dithianes
Fluoride cleavable ketal

O O
LiBF4
O O O
O
O
Me3Si

Base cleavable ketal

HO SO2Ph SO2Ph
O OH O
DBU, DCM
O O
R1 R2 pTSA R1 R2
R1 R2

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 58


PGs for Carboxylic Acids
O O O O
R O R O Ph
R OMe R O
tButyl Ester Phenyl Ester
Methyl Ester Allyl Ester

O O R O O NO2
R
Bn Si
R O R O R R O CCl3 R O
Benzyl Ester Silyl Ester Halo Ester o-Nitrobenzyl Ester

OR TMS
OR O O O N
R OR TMS R O
R O R O
Orthoester TMS ethyl
Ester SEM Ester 1,3-Oxzoline

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 59


PGs for Carboxylic Acids
1. Alkyl esters:

Formation: Fischer esterification (RCOOH + R’OH + H+)


Acid chloride + ROH, pyridine
t-Butyl esters: Isobutylene & acid
Methyl esters: Diazomethane

Cleavage: LiOH, THF, H2O


Enzyme hydrolysis
t-Butyl esters are cleaved with aq. acid
Bu2SnO, PhH, reflux

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 60


Alkyl Esters
DCC

BnOH OBn
OH

DCC O
O

Mitsunobu Reaction

EtOH, Ph3P OEt


OH

DEAD, Et2O O
O

H2SO4, Cat O
CO2H
OR O
1, MsCl, Py
2. tBuOH, Et3N
CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 61
Aryl Esters
Due to steric hindrance, BHT and BHA do not react with
organometallic reagents

MeO OH MeO OH

BHT BHA

O O nBuLi nBu O
BHT, nBuLi

nBu Cl nBu OBHT nBu OBHT

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 62


Silyl Esters & Oxazolines
Bulky silyl esters do not react with organometallic
reagents; fluorides are required to hydrolyse

OH iPr3SiCl OSiiPr3

O Im, THF O

Oxazolines are stable to organometallic reagents,


reducing agents like LAH etc.,

OH H2N OH O

O Toluene, N
Heat

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 63


PGs for Amines
Introduction of protecting groups

Unlike alcohols, it is difficult to protect amines through alkylation

Protection R1
R NH2 R NH + R N + Quarternary
through R1 R1
alkylation

Primary and secondary amines are prone to oxidation

NH bonds undergo metallation on treatment with organometallic


reagents

Because of the presence of the lone pair of electrons, Nitrogen


could be protonated/alkylated.

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 64


PGs for Amines
Best ways to protect amines

It should be protected in such a way that further alkylation doesn’t


take place

To make the lone pairs less reactive, it is better to attach a carbonyl


group
H
N R1
R NH2 R
O
H
N O
R NH2 R R1
O

Amides could be cleaved by acids

Carbamates could be cleaved by a variety of reagents, depending


on the nature of the carbamates
CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 65
PGs for Amines
O O O O
R R R R
N Me N CF3 N OMe N O
H H H H
Methyl tButylcarbamate
Methyl amide Trifluoromethyl
amide carbamate (Boc)

O SiMe3 O
O
R R
N O CCl3 R N O
H N O H
Trichloroethyl H
Trimethylsilylethyl Allyl carbamate
carbamate (Troc) (Alloc)
carbamate (Teoc)

O Ph
R O
N O
H R
Benzylcarbamate N O
H
(CBz) 9-Fluroenylmethyl
carbamate (Fmoc)
CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 66
Amides
O
R
N R1
H
Amides

Basicity of nitrogen is reduced; so electrophilic attack on the


nitrogen is reduced
Amides are stable to hydrogenation, oxidation, nucleophiles &
organometallic (except organolithium) reagents

O
R
R1COCl, Py N R1
R NH2 H
Amides
H+, H2O

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 67


Carbamates
O
R
N OR1
H
Alkyl
carbamates

Carbamates are like amides and so can’t act as a nucleophile

Carbmates are stable to oxidation and aqueous bases though it may


react with reducing agents

O O
R
Cl OR1 N OR1
R NH2 H
Carbamates
K2CO3, MeOH

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 68


Benzyl carbamates (Cbz or Z)
O
O
Cl OBn R H2/Pd-C
R NH2 N OBn R NH2
Base H ROH

Formation: BnOCOCl, Na2CO3, H2O


(BnOCO)2O, dioxane, H2O

Cleavage: H2/ Pd-C


H2/ Pd-C, NH3
Pd-C, HCOONH4
BBr3, DCM
KOH, MeOH

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 69


tButyloxycarbonyl (Boc)
O
O
Cl O R HCl
R NH2 N O R NH2
OR H ROH
(Boc)2O
Base

Formation: (Boc)2O, NaOH, H2O, 25 oC


(Boc)2O, TEA, MeOH/ DMF
BocN3, DMSO

Cleavage: 3M HCl, EtOAc


TFA, PhSH, DCM
AcCl, MeOH
CAN, CH3CN

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 70


9-Fluroenylmethyloxy carbonyl (Fmoc)

O
O N
Cl O H
R NH2 R R NH2
N O
Base H

Formation: Fmoc-Cl, NaHCO3, aq. Dioxane


Fmoc-OC6F5, NaHCO3, acetone

Cleavage: Amine bases


Piperidine, morpholine, diisopropylethyl amine
TBAF, DMF

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 71


Allyloxycarbonyl (Alloc)
O
O
Pd(0)
Cl O R R NH2
R NH2 N O Et3SiH
Base H

Formation: CH2=CHCH2OCOCl, py
(CH2=CHCH2OCO)2O, DCM

Cleavage: Pd(Ph3P)4, TBTH, AcOH


Pd(Ph3P)4, Dimedone, THF

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 72


Trichloroethyloxycarbonyl (Troc)
O CCl3
O CCl3
Cl O R Zn Dust
R NH2 R NH2
N O
Base H

Formation: Cl3CCH2OCOCl, Py or aq. NaOH

Cleavage: Zn, THF, H2O, pH= 4.2


Zn-Pb couple, 4:1 THF/ 1M NH4OAc

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 73


Trimethylsilylethyloxycarbonyl (Teoc)
TMS
O TMS
O
Cl O F-
R R NH2
R NH2 N O
Base H

Formation: TMSCH2CH2OCOCl (Teo-Cl) or Teoc-N3


Teoc-OC6H4-4-NO2, NaOH
Teoc-OSu, TEA

Cleavage: TBAF, CH3CN

HF, Py, THF

KF, CH3CN

TAST, CH3CN

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 74


Examples
CO2H CO2H
(Boc)2O
NH2 Im, THF NHBoc

Boc OAc H OAc


N AlCl3 N

OTBS DCM OTBS

O
NH2
HN O
Pd(OAc)2
CO2Me
CO2Me
Et3N, Et3SiH

CH-401 Course on Organic Synthesis; Course Instructor: Krishna P. Kaliappan 75

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