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Cell Unit and numbered lists to make it easier for students to follow. The
illustration of the effects of the bicoid mutation has been revised
• Chapter 4. General Features of Cells: This chapter has an
(see Figure 19.8).
expanded discussion of how to calculate the surface area-to-
• Chapter 20. Genetic Technology: In Chapter 20 of Biology, 4th
volume ratio, depending on the shape of a cell.
edition, a new subsection has been added on how genetically modi-
• Chapter 5. Membrane Structure, Synthesis, and Transport:
fied organisms can make products that are useful to people (also see
The section of membrane transport has been revised to better
Table 20.1).
distinguish simple diffusion from facilitated diffusion.
• Chapter 21. Genomes, Proteomes, and Bioinformatics: The
• Chapter 6. An Introduction to Energy, Enzymes, and
rapidly changing information on the properties of bacterial,
Metabolism: This chapter has a new BioTIPS feature that
archaeal, and eukaryotic genomes has been updated.
helps students understand how a mutation could affect an
allosteric site in an enzyme. Evolution Unit
• Chapter 7. Cellular Respiration and Fermentation: The • Chapter 22. The Origin and History of Life: This chapter has
section on oxidative phosphorylation has been divided into two a new BioTIPS feature that helps students to learn how the cal-
sections, the second of which takes a closer look at ATP synthase. culation of radioisotope decay is used to date fossils.
• Chapter 8. Photosynthesis: This chapter has a new BioTIPS • Chapter 23. An Introduction to Evolution: The topic of whale
feature that asks students to distinguish between the light- evolution from tetrapod mammals has been added, along with a
harvesting complex, P680, and the primary electron acceptor. new figure (see Figure 23.7).
• Chapter 9. Cell Communication: In Biology, 4th edition, the • Chapter 24. Population Genetics: An example has been added
topic of apoptosis has been expanded to include a discussion of to help students use the Hardy-Weinberg equation to calculate
how it plays a role in certain diseases (see Table 9.2). allele and genotype frequencies.
• Chapter 10. Multicellularity: The section comparing animal • Chapter 25. Origin of Species and Macroevolution: This
and plant cells has been streamlined. The discussion of plasmo- chapter has a new BioTIPS feature that helps students learn how
desmata in plants has also been revised. to design an experiment to determine if two populations consti-
tute different species.
Genetics Unit • Chapter 26. Taxonomy and Systematics: The information on
• Chapter 11. Nucleic Acid Structure, DNA Replication, and eukaryotic supergroups has been updated. The chapter also
Chromosome Structure: This chapter has a new BioTIPS includes an example to help students learn how to assess evolu-
feature that pertains to the role of DNA ligase during DNA tionary trees using the principle of parsimony.
replication. The illustration regarding the Avery, MacLeod,
and McCarty experiment has been revised (see Figure 11.2). Diversity Unit
• Chapter 12. Gene Expression at the Molecular Level: The • Chapter 27. Archaea and Bacteria: Phylogenetic history of
section on RNA modification (formerly RNA processing) has major lineages of Bacteria and Archaea has been updated to
been reorganized. reflect recent progress, including identification of archaea most
• Chapter 13. Gene Regulation: A new section has been added closely related to eukaryotes.
(Section 13.5) on Epigenetic Gene Regulation, including a new • Chapter 28. Protists: The phylogenetic history of major lin-
figure (Figure 13.21) and two new tables (Tables 13.1 and 13.2). eages of protists has been updated to reflect recent progress,
• Chapter 14. Mutation, DNA Repair, and Cancer: Section 14.1 including identification of the root of the eukaryotic tree of life.
that was in Biology, 3rd edition, is now subdivided into two sec- A new Feature Investigation describes an experiment that tests
tions on the Causes of Mutation and the Consequences of hypotheses of protist fossil identifications and provides results
Mutation. useful in industrial applications of materials produced by com-
• Chapter 15. The Eukaryotic Cell Cycle, Mitosis, and mon protists.
Meiosis: The Genomes & Proteomes Connection has been • Chapter 29. Plants and the Conquest of Land: Table 29.1 that
changed to the topic of how mitosis in eukaryotes evolved from summarizes the features of major groups of land plants has been
binary fission that occurs in prokaryotic cells (see Figure 15.10). reorganized to enhance reader access.
• Chapter 16. Simple Patterns of Inheritance: This chapter has • Chapter 30. The Evolution and Diversity of Modern
a new BioTIPS feature that helps students learn how to use prob- Gymnosperms and Angiosperms: To emphasize the
ability and a Punnett square to predict the outcome of crosses. importance of whole genome duplication (WGD) events in the
• Chapter 17. Complex Patterns of Inheritance: Building on evolutionary history of seed plants, major WGD events have been
the BioTIPS feature in Chapter 17, Chapter 18 has a BioTIPS mapped onto phylogenetic diagrams.
feature that focuses on maternal inheritance. • Chapter 31. Fungi: Phylogenetic history of the fungi has been
• Chapter 18. Genetics of Viruses and Bacteria: The first part updated to reflect recent progress. Table 31.1 has been simplified
of Chapter 18 has been reorganized by adding a new section to include major derived fungal lineages of most concern to
(Section 18.2) on viral reproductive cycles. human society.
• Chapter 19. Developmental Genetics: In many places, the • Chapter 32. An Introduction to Animal Diversity: The
information in this chapter has been broken down into bulleted chapter opening photograph has been changed to illustrate a
Skills Development SciSKILLS is a mental action such as analyze data, form hypoth-
eses, make predictions, or perform calculations. These are skills
At the beginning of each section, Learning Outcomes inform
scientists generally perform and students should practice.
students of concepts they should understand and new to the
The emphasis on skills development continues in the F eature
fourth edition are skills-based Learning Outcomes. Labeled as
Investigations. Feature Investigations provide a complete descrip-
SciSKILLS, these Learning Outcomes are specific to the skills
tion of experiments, including data analysis, so students can
students will acquire when mastering the material and provide
understand how experimentation leads to an understanding of bio-
a specific understanding of how such skills may be assessed.
logical concepts.
To help guide the revision for the fourth edition, student usage Below is an example of one of the heat maps from Chapter 8.
data and input were used, derived from thousands of SmartBook® The color-coding of highlighted sections indicates the various
users of the 3rd edition. SmartBook “heat maps” provided a quick levels of difficulty students experienced in learning the material,
visual snapshot of chapter usage data and the relative difficulty topics highlighted in red being the most challenging for students.
students experienced in mastering the content. These data directed
the authors to evaluate text content that was particularly challeng-
ing for students. These same data were also used to revise the
SmartBook probes.
• If the data indicated that the subject was more difficult than
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students responding incorrectly to the probes, the authors revised
or reorganized the content to be as clear and illustrative as pos-
sible by rewriting the section, providing additional examples or
revised figures to assist visual learners, etc.
• In other cases, one or more of the SmartBook probes for a
section was not as clear as it might be or did not appropriately
reflect the content in the chapter. In these cases the probe, rather
than the text, was edited.
In addition, a Conceptual
Question at the end of
each chapter is directly
aimed at exploring a par-
ticular principle related to
the content of the chapter.
•Unit openers serve two purposes. They allow the student to see
the big picture of the unit. In addition, the unit openers draw
attention to the principles of biology that will be emphasized in
that unit.
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Using Connect and Biology, 4th edition
Biology, 4th edition, and its online assets have been carefully crafted to help professors and students, work efficiently and effectively
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CONTENTS
Chapter 1 Feature Investigation: Anfinsen Showed That
the Primary Structure of Ribonuclease Determines
Its Three-Dimensional Structure 60
An Introduction to Biology 1
Genomes & Proteomes Connection: Proteins Contain
1.1 Principles of Biology and the Levels of Biological Functional Domains 62
Organization 2 3.7 Nucleic Acids 63
1.2 Unity and Diversity of Life 6
Genomes & Proteomes Connection: The Study of Genomes
and Proteomes Provides an Evolutionary Foundation for Our
UNIT II Cell
Understanding of Biology 9
1.3 Biology as a Scientific Discipline 14
Feature Investigation: Observation and Experimentation Form
the Core of Biology 18
UNIT I Chemistry
Chapter 4
Chapter 3 Chapter 5
The Chemical Basis of Life II: Membrane Structure, Synthesis,
Organic Molecules 44 and Transport 100
3.1 The Carbon Atom 44 5.1 Membrane Structure 101
3.2 Formation of Organic Molecules and Genomes & Proteomes Connection: Approximately 20–30% of
Macromolecules 47 All Genes Encode Transmembrane Proteins 102
3.3 Overview of the Four Major Classes of Organic 5.2 Fluidity of Membranes 104
Molecules Found in Living Cells 47 5.3 Synthesis of Membrane Components
3.4 Carbohydrates 47 in Eukaryotic Cells 106
3.5 Lipids 51 5.4 Overview of Membrane Transport 108
3.6 Proteins 55
xxi
5.5 Transport Proteins 111 Chapter 9
Feature Investigation: Agre Discovered That Osmosis Occurs
More Quickly in Cells with a Channel That Allows the Cell Communication 175
CONTENTS
Chapter 8
Chapter 11
Photosynthesis 156
8.1 Overview of Photosynthesis 156 Nucleic Acid Structure, DNA Replication,
8.2 Reactions That Harness Light Energy 159 and Chromosome Structure 211
Genomes & Proteomes Connection: The Cytochrome 11.1 Biochemical Identification of the Genetic Material 211
Complexes of Mitochondria and Chloroplasts Contain
Feature Investigation: Avery, MacLeod, and McCarty Used
Evolutionarily Related Proteins 163
Purification Methods to Reveal That DNA Is the Genetic
8.3 Molecular Features of Photosystems 163 Material 213
8.4 Synthesizing Carbohydrates via the Calvin Cycle 166 11.2 Nucleic Acid Structure 215
Feature Investigation: The Calvin Cycle Was Determined by 11.3 Overview of DNA Replication 219
Isotope-Labeling Methods 168
8.5 Variations in Photosynthesis 170
xxii CONTENTS
11.4 Molecular Mechanism of DNA Replication 222 Chapter 15
Genomes & Proteomes Connection: DNA Polymerases Are a
Family of Enzymes with Specialized Functions 227 The Eukaryotic Cell Cycle, Mitosis,
CONTENTS
11.5 Molecular Structure of Eukaryotic Chromosomes 229 and Meiosis 300
15.1 The Eukaryotic Cell Cycle 300
Chapter 12
Feature Investigation: Masui and Markert’s Study of Oocyte
Maturation Led to the Identification of Cyclins and Cyclin-
Gene Expression at the Molecular Level 234 Dependent Kinases 305
12.1 Overview of Gene Expression 235 15.2 Mitotic Cell Division 306
12.2 Transcription 238 Genomes & Proteomes Connection: Mitosis in Eukaryotes
Evolved from the Binary Fission That Occurs in Prokaryotic
12.3 RNA Modification in Eukaryotes 240
Cells 310
12.4 Translation and the Genetic Code 242
15.3 Meiosis and Sexual Reproduction 311
Feature Investigation: Nirenberg and Leder Found That RNA
15.4 Variation in Chromosome Structure
Triplets Can Promote the Binding of tRNA to Ribosomes 245
and Number 318
12.5 The Machinery of Translation 247
Genomes & Proteomes Connection: Comparisons of Small
Subunit rRNAs Among Different Species Provide a Basis for Chapter 16
Establishing Evolutionary Relationships 250
12.6 The Stages of Translation 251 Simple Patterns of Inheritance 325
16.1 Mendel’s Laws of Inheritance 326
Chapter 13 16.2 The Chromosome Theory of Inheritance 331
16.3 Pedigree Analysis of Human Traits 334
Gene Regulation 257 16.4 Sex Chromosomes and X-Linked Inheritance
13.1 Overview of Gene Regulation 257 Patterns 335
13.2 Regulation of Transcription in Bacteria 260 Feature Investigation: Morgan’s Experiments Showed a
Correlation Between a Genetic Trait and the Inheritance
Feature Investigation: Jacob, Monod, and Pardee Studied of a Sex Chromosome in Drosophila 337
a Constitutive Mutant to Determine the Function of the Lac
Repressor 264 16.5 Variations in Inheritance Patterns and Their Molecular
Basis 339
13.3 Regulation of Transcription in Eukaryotes: Roles
of Transcription Factors and Mediator 269 Genomes & Proteomes Connection: Recessive
Alleles That Cause Diseases May Have Multiple Effects
13.4 Regulation of Transcription in Eukaryotes: Changes in on Phenotype 340
Chromatin Structure and DNA Methylation 271
16.6 Genetics and Probability 343
13.5 Epigenetic Gene Regulation 274
13.6 Regulation of RNA Modification and Translation in
Eukaryotes 276 Chapter 17
Genomes & Proteomes Connection: Alternative Splicing Tends
to Be More Prevalent in Complex Eukaryotic Species 277 Complex Patterns of Inheritance 347
17.1 Gene Interaction 348
Chapter 14 17.2 Genes on the Same Chromosome: Linkage,
Recombination, and Mapping 350
Mutation, DNA Repair, and Cancer 281 Feature Investigation: Bateson and Punnett’s Cross of
Sweet Peas Showed That Genes Do Not Always Assort
14.1 Consequences of Mutations 281 Independently 350
14.2 Causes of Mutations 285 17.3 Extranuclear Inheritance: Organelle
Feature Investigation: The Lederbergs Used Replica Plating to Genomes 354
Show That Mutations Are Random Events 285
Genomes & Proteomes Connection: Chloroplast and
14.3 DNA Repair 289 Mitochondrial Genomes Are Relatively Small, but Contain
14.4 Cancer 291 Genes That Encode Important Proteins 354
Genomes & Proteomes Connection: Mutations in 17.4 Epigenetic Inheritance 357
Approximately 300 Human Genes May Promote Cancer 298
CONTENTS xxiii
Chapter 18
UNIT IV Evolution
Genetics of Viruses and Bacteria 364
CONTENTS
xxiv CONTENTS
Chapter 25 27.5 Ecological Roles and Biotechnology Applications 557
Feature Investigation: Dantas and Colleagues Found That Many
Origin of Species and Macroevolution 505 Bacteria Can Break Down and Consume Antibiotics as a Sole
CONTENTS
Carbon Source 557
25.1 Identification of Species 506 Genomes & Proteomes Connection: The Evolution of Bacterial
25.2 Mechanisms of Speciation 511 Pathogens 561
Feature Investigation: Podos Found That an Adaptation
for Feeding May Have Promoted Reproductive Isolation in Chapter 28
Finches 513
25.3 The Pace of Speciation 517 Protists 565
25.4 Evo-Devo: Evolutionary Developmental Biology 518
Genomes & Proteomes Connection: The Study of the Pax6 28.1 An Introduction to Protists 565
Gene Indicates That Different Types of Eyes Evolved from One 28.2 Evolution and Relationships 568
Simple Form 521 Genomes & Proteomes Connection: Genome Sequences Reveal
the Different Evolutionary Pathways of Trichomonas vaginalis
and Giardia intestinalis 570
Chapter 26
28.3 Nutritional and Defensive Adaptations 577
Taxonomy and Systematics 525 Feature Investigation: Cook and Colleagues Demonstrated
That Cellulose Helps Green Algae Avoid Chemical
26.1 Taxonomy 526 Degradation 578
26.2 Phylogenetic Trees 528 28.4 Reproductive Adaptations 580
26.3 Cladistics 532
Feature Investigation: Cooper and Colleagues Compared DNA Chapter 29
from Extinct Flightless Birds and Existing Species to Propose a
New Phylogenetic Tree 536 Plants and the Conquest of Land 588
26.4 Molecular Clocks 538
26.5 Horizontal Gene Transfer 540 29.1 Ancestry and Diversity of Modern Plants 588
Genomes & Proteomes Connection: Due to Horizontal Gene Genomes & Proteomes Connection: Comparison of Plant
Transfer, the “Tree of Life” Is Really a “Web of Life” 541 Genomes Reveals Genetic Changes That Occurred During Plant
Evolution 597
29.2 An Evolutionary History of Land Plants 599
29.3 The Origin and Evolutionary Importance of the Plant
UNIT V Diversity Embryo 602
Feature Investigation: Browning and Gunning Demonstrated
That Placental Transfer Tissues Facilitate the Movement of
Organic Molecules from Gametophytes to Sporophytes 603
29.4 The Origin and Evolutionary Importance of Leaves
and Seeds 605
Chapter 30
CONTENTS xxv
30.3 The Role of Coevolution in Angiosperm Chapter 34
Diversification 628
30.4 Human Influences on Angiosperm The Vertebrates 702
CONTENTS
Diversification 630
34.1 Vertebrates: Chordates with a Backbone 702
34.2 Gnathostomes: Jawed Vertebrates 705
Chapter 31
34.3 Tetrapods: Gnathostomes with Four Limbs 710
Fungi 633 Feature Investigation: Davis and Colleagues Provided
a Genetic-Developmental Explanation for Limb Length in
31.1 Evolution and Distinctive Features of Fungi 633 Tetrapods 711
31.2 Fungal Asexual and Sexual Reproduction 637 34.4 Amniotes: Tetrapods with a Desiccation-Resistant
31.3 Diversity of Fungi 639 Egg 714
31.4 Fungal Ecology and Biotechnology 644 34.5 Mammals: Milk-Producing Amniotes 720
Feature Investigation: Márquez and Associates Discovered That Genomes & Proteomes Connection: Comparing the Human
a Three-Partner Symbiosis Allows Plants to Cope with Heat and Chimpanzee Genetic Codes 727
Stress 648
Genomes & Proteomes Connection: Genomic Comparisons of
Forest Fungi Reveal Coevolution with Plants 650 UNIT VI Flowering Plants
Chapter 32
xxvi CONTENTS
Feature Investigation: An Experiment Performed
by Briggs Revealed the Role of Auxin UNIT VII Animals
in Phototropism 760
CONTENTS
Genomes & Proteomes Connection: Gibberellin Function Arose
in a Series of Stages During Plant Evolution 762
36.3 Plant Responses to Environmental Stimuli 765
Chapter 37
Feature Investigation: Liang and Mahadevan Used 41.5 Impact on Public Health 868
Time-Lapse Video and Mathematical Modeling to
Explain How Flowers Bloom 818 Chapter 42
39.3 Male and Female Gametophytes and Double
Fertilization 820 Neuroscience II: Evolution, Structure,
39.4 Embryo, Seed, Fruit, and Seedling Development 823 and Function of the Nervous System 872
39.5 Asexual Reproduction in Flowering
Plants 827 42.1 The Evolution and Development of Nervous
Systems 872
Genomes & Proteomes Connection: The Evolution of Plantlet
Production in Kalanchoë 827 42.2 Structure and Function of the Nervous Systems of
Humans and Other Vertebrates 875
CONTENTS xxvii
Genomes & Proteomes Connection: Many Genes Have Been Genomes & Proteomes Connection: Evolution and Genetics
Important in the Evolution and Development of the Cerebral Explains Lactose Intolerance 949
Cortex 884 45.5 Neural and Endocrine Control of Digestion 952
CONTENTS
42.3 Cellular Basis of Learning and Memory 884 45.6 Impact on Public Health 953
Feature Investigation: Gaser and Schlaug Showed That the Feature Investigation: Marshall and Warren and Coworkers
Sizes of Certain Brain Structures Differ Between Musicians and Demonstrated a Link Between Bacterial Infection and Ulcers 955
Nonmusicians 888
42.4 Impact on Public Health 889
Chapter 46
Chapter 43 Control of Energy Balance, Metabolic Rate, and
Body Temperature 959
Neuroscience III:
Sensory Systems 893 46.1 Use and Storage of Energy 959
46.2 Regulation of the Absorptive and Postabsorptive
43.1 An Introduction to Sensation 893 States 962
43.2 Mechanoreception 895 Genomes & Proteomes Connection: A Family of GLUT
43.3 Thermoreception and Nociception 901 Proteins Transports Glucose in All Animal Cells 963
43.4 Electromagnetic Reception 902 46.3 Energy Balance and Metabolic Rate 965
43.5 Photoreception 902 Feature Investigation: Coleman Revealed a Satiety Factor in
Genomes & Proteomes Connection: Color Vision Is an Ancient Mammals 968
Adaptation in Animals 906 46.4 Regulation of Body Temperature 970
43.6 Chemoreception 910 46.5 Impact on Public Health 974
Feature Investigation: Buck and Axel Discovered a Family
of Olfactory Receptor Proteins That Bind Specific Odor
Molecules 912
Chapter 47
43.7 Impact on Public Health 915
Circulatory Systems 977
Chapter 44 47.1 Types of Circulatory Systems 977
Genomes & Proteomes Connection: A Four-Chambered Heart
Muscular-Skeletal Systems and Locomotion 919 Evolved from Simple Contractile Tubes 980
47.2 The Composition of Blood 981
44.1 Types of Animal Skeletons 919 47.3 The Vertebrate Heart and Its Function 983
44.2 Skeletal Muscle Structure and the Mechanism 47.4 Blood Vessels 987
of Force Generation 921
47.5 Relationship Among Blood Pressure, Blood Flow,
Genomes & Proteomes Connection: Did an Ancient Mutation in and Resistance 989
Myosin Play a Role in the Development of the Human Brain? 924
Feature Investigation: Furchgott Discovered a Vasodilatory
44.3 Types of Skeletal Muscle Fibers and Their Factor Produced by Endothelial Cells 991
Functions 928
47.6 Adaptive Functions of Closed Circulatory Systems 994
Feature Investigation: Evans and Colleagues Activated a Gene
to Produce “Marathon Mice” 930
47.7 Impact on Public Health 995
44.4 Animal Locomotion 932
44.5 Impact on Public Health 934 Chapter 48
xxviii CONTENTS
Genomes & Proteomes Connection: Hemoglobin First Evolved Chapter 52
Over 500 mya 1016
48.5 Control of Ventilation 1017 Animal Development 1089
CONTENTS
48.6 Adaptations to Extreme Conditions 1018
52.1 Principles of Embryonic Development 1089
48.7 Impact on Public Health 1019
52.2 General Events of Embryonic Development 1090
52.3 Control of Cell Differentiation and Morphogenesis
Chapter 49 During Animal Development 1099
Genomes & Proteomes Connection: Groups of Embryonic Cells
Excretory Systems and the Homeostasis Can Produce Specific Body Structures Even When Transplanted
of Internal Fluids 1023 into Different Animals 1100
49.1 Principles of Homeostasis of Internal Fluids 1023 Feature Investigation: Harland and Coworkers Identified Genes
Expressed Specifically in the Organizer 1101
Feature Investigation: Cade and Colleagues Discovered Why
Athletes’ Performances Wane on Hot Days 1027 52.4 Impact on Public Health 1103
49.2 Excretory Systems in Different Animal Groups 1030
49.3 Structure and Function of the Mammalian Kidney 1033 Chapter 53
Genomes & Proteomes Connection: Aquaporins Comprise a
Large Family of Proteins That Are Found in All Animals 1039 Immune Systems 1107
49.4 Impact on Public Health 1040 53.1 Types of Pathogens 1108
53.2 Innate Immunity 1108
Chapter 50 Feature Investigation: Lemaitre and Colleagues Identify an
Immune Function for Toll Protein in Drosophila 1111
Endocrine Systems 1044 53.3 Acquired Immunity 1113
50.1 Types of Hormones and Their Mechanisms of Genomes & Proteomes Connection: Recombination and
Hypermutation Produce an Enormous Number of Different
Action 1045
Immunoglobulin Proteins 1118
50.2 Links Between the Endocrine and Nervous Systems 1048
53.4 Impact on Public Health 1125
50.3 Hormonal Control of Metabolism and Energy
Balance 1050
Feature Investigation: Banting, Best, MacLeod, and Collip Were
the First to Isolate Active Insulin 1056 UNIT VIII Ecology
50.4 Hormonal Control of Mineral Balance 1058
Genomes & Proteomes Connection: Hormones and Receptors
Evolved as Tightly Integrated Molecular Systems 1061
50.5 Hormonal Control of Growth and Development 1062
50.6 Hormonal Control of Reproduction 1064
50.7 Impact on Public Health 1065
Chapter 51
CONTENTS xxix
Genomes & Proteomes Connection: Temperature Tolerance Chapter 58
May Be Manipulated by Genetic Engineering 1140
54.4 Climate and Its Relationship to Biological Community Ecology 1223
CONTENTS
Communities 1144
54.5 Major Biomes 1147 58.1 Differing Views of Communities 1223
54.6 Continental Drift and Biogeography 1157 58.2 Patterns of Species Richness 1225
58.3 Calculating Species Diversity 1227
Genomes & Proteomes Connection: Metagenomics May Be
Chapter 55
Used to Measure Species Diversity 1229
Behavioral Ecology 1162 58.4 Species Diversity and Community Stability 1230
58.5 Succession: Community Change 1231
55.1 The Influence of Genetics and Learning on 58.6 Island Biogeography 1234
Behavior 1163
Feature Investigation: Simberloff and Wilson’s Experiments
Genomes & Proteomes Connection: Some Behavior Results Tested the Predictions of the Equilibrium Model of Island
from Simple Genetic Influences 1163 Biogeography 1237
55.2 Local Movement and Long-Range Migration 1167
Feature Investigation: Tinbergen’s Experiments Showed That Chapter 59
Digger Wasps Use Landmarks to Find Their Nests 1167
55.3 Foraging Behavior 1171 Ecosystem Ecology 1241
55.4 Communication 1173
59.1 Food Webs and Energy Flow 1242
55.5 Living in Groups 1175
Genomes & Proteomes Connection: Using Genetically
55.6 Altruism 1176 Engineered Plants to Remove Pollutants 1248
55.7 Mating Systems 1179 59.2 Biomass Production in Ecosystems 1248
59.3 Biogeochemical Cycles 1251
Chapter 56 Feature Investigation: Stiling and Drake’s Experiments with
Elevated CO2 Showed an Increase in Plant Growth but a
Ecology 1183 Decrease in Herbivory 1254
56.1 Understanding Populations 1183
56.2 Demography 1188 Chapter 60
Feature Investigation: Murie’s Collections of Dall Mountain
Sheep Skulls Permitted the Accurate Construction of Life Biodiversity and Conservation Biology 1260
Tables 1189
60.1 What Is Biodiversity? 1261
56.3 How Populations Grow 1192
60.2 Why Conserve Biodiversity? 1261
Genomes & Proteomes Connection: Hexaploidy Increases the
Feature Investigation: Ecotron Experiments Showed
Growth of Coast Redwood Trees 1196
the Relationship Between Biodiversity and Ecosystem
56.4 Human Population Growth 1197 Function 1263
60.3 The Causes of Extinction and Loss of Biodiversity 1266
Chapter 57 60.4 Conservation Strategies 1270
Genomes & Proteomes Connection: Can Cloning Save
Species Interactions 1202 Endangered Species? 1277
57.1 Competition 1203 Appendix A: Periodic Table of the Elements A-1
Feature Investigation: Connell’s Experiments with Barnacle Appendix B: Answer Key A-2
Species Revealed Each Species’ Fundamental and Realized Glossary G-1
Niches 1206
Credits C-1
57.2 Predation, Herbivory, and Parasitism 1209
Index I-1
Genomes & Proteomes Connection: Transgenic Plants May Be
Used in the Fight Against Plant Diseases 1216
57.3 Mutualism and Commensalism 1217
57.4 Bottom-Up and Top-Down Control 1219
xxx CONTENTS
CHAPTER OUTLINE
1.1 rinciples of Biology and the Levels of Biological
P An Introduction
Organization
1.2 Unity and Diversity of Life
to Biology
1.3 Biology as a Scientific Discipline
1
Summary of Key Concepts
Assess and Discuss
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ACE inhibitor (Lotensin)
at many points as you progress through this textbook, and they are indi-
1.1
Principles of Biology and cated with the icon. In particular, we will draw your attention to them
the Levels of Biological at the beginning of each unit, and we will refer to them within particular
figures in Chapters 3 through 60. It should be noted that the principles of
Organization biology are also governed by the laws of chemistry and physics, which
Learning Outcomes: are discussed in Chapters 2, 3, and 6.
1. Describe the principles of biology. Principle 1: Cells are the simplest units of life. The term
2. Explain how life can be viewed at different levels of biological organism can be applied to all living things. Organisms maintain an
complexity.
internal order that is separated from the environment (Figure 1.4a).
The simplest unit of such organization is the cell, which we will exam-
Because biology is the study of life, a good way to begin a biology ine in Unit II. One of the foundations of biology is the cell theory,
textbook is to distinguish living organisms from nonliving objects. At which states that (1) all organisms are composed of cells, (2) cells are
first, the distinction might seem obvious. A person is alive, but a rock the smallest units of life, and (3) new cells come from pre-existing
is not. However, the distinction between living and nonliving may cells via cell division. Unicellular organisms are composed of one cell,
seem less obvious when we consider microscopic entities. Is a bac- whereas multicellular organisms such as plants and animals contain
terium alive? What about a virus or a chromosome? In this section, many cells. In plants and animals, each cell has an internal order, and
we will examine the principles that underlie the characteristics of all the cells within the organism have specific arrangements and functions.
forms of life and explore other broad principles in biology. We will
then consider the levels of organization that biologists study, ranging Principle 2: Living organisms use energy. The maintenance of
from atoms and small molecules to very large geographical areas. organization requires energy. Therefore, all living organisms acquire
energy from the environment and use that energy to maintain their
internal order. Cells carry out a variety of chemical reactions that
The Study of Life Has Revealed a Set
are responsible for the breakdown of nutrients. Such reactions often
of Unifying Principles release energy in a process called respiration. The energy may be
Biologists have studied many different species and learned that a set of used to synthesize the components that make up individual cells
principles applies to all fields of biology. Twelve broad principles are and living organisms. Chemical reactions involved with the break-
described in Figure 1.4. The first eight principles are often used as crite- down and synthesis of cellular molecules are collectively known
ria to define the basic features of life. You will see these twelve principles as metabolism. Plants, algae, and certain bacteria can directly
(a) Cells are the simplest (g) Populations of organisms
units of life: evolve from one generation
Organisms maintain an to the next:
internal order. The simplest Populations of organisms
unit of organization is the cell. change over the course of
Yeast cells are shown here. many generations. Evolution
results in traits that promote
13.7 m
survival and reproductive
success.
(b) Living organisms use energy: (h) All species (past and
Organisms need energy to present) are related by an
maintain internal order. evolutionary history:
These algae harness light The three mammal species
energy via photosynthesis. shown here share a common
Energy is used in chemical ancestor, which was also a
reactions collectively known mammal.
as metabolism.
(f) The genetic material provides (l) Biology affects our society:
a blueprint for reproduction: Many discoveries in biology
To sustain life over many have had major effects on
generations, organisms must our society. For example,
reproduce. Due to the biologists developed Bt-corn,
transmission of genetic which is resistant to insect
material, offspring tend to pests and widely planted by
have traits like their parents. farmers.
Figure 1.4 Twelve principles of biology. The first eight principles are often used as criteria for defining the basic features of life. Note: The
twelve principles described here were modeled after the themes and core competencies described in Vision and Change in Undergraduate
Biology, a report that was published in 2009 and organized by the American Association for the Advancement of Science. Vision and Change
proposed five themes. We have divided them into ten principles to make them more accessible to beginning biology students. The five Vision and
Change themes are related to our principles in the following manner: 1. Evolution (principles g and h); 2. Structure and Function (principle i);
3. Information Flow, Exchange, and Storage (principles e and f); 4. Pathways and Transformations of Energy and Matter (principles b, c, and d);
5. Systems (principles a and j). The last two principles are modeled after two core competencies described in Vision and Change: Ability to Apply
the Process of Science (principle k) and Ability to Understand the Relationship between Science and Society (principle l).
BioConnections: Look ahead to Figure 52.11. Which of these principles is this figure emphasizing?
harness light energy to produce their own nutrients in the process of Principle 3: Living organisms interact with their environment.
photosynthesis (Figure 1.4b). They are the primary producers of food To survive, living organisms must be able to interact with their envi-
on Earth. In contrast, some organisms, such as animals and fungi, are ronment, which includes other organisms they may encounter. All
consumers—they must use other organisms as food to obtain energy. organisms must respond to environmental changes. In the winter,
4 CHAPTER 1
many species of mammals develop a thicker coat of fur that protects of many generations, the fossil record indicates that the long snout
them from the cold temperatures. Plants respond to changes in the occurred via biological evolution in which modern anteaters evolved
angle of the sun. If you place a plant in a window, it will grow toward from populations of organisms with shorter snouts.
the light (Figure 1.4c).
Principle 8: All species (past and present) are related by an
Principle 4: Living organisms maintain homeostasis. Although evolutionary history. Principle 7 considers evolution as an ongo-
life is a dynamic process, living cells and organisms regulate their ing process that happens from one generation to the next. Evidence
cells and bodies to maintain relatively stable internal conditions, a from a variety of sources, including the fossil record and DNA
process called homeostasis (from the Greek, meaning to stay the sequences, also indicates that all organisms on Earth share a common
same). The degree to which homeostasis is achieved varies among ancestry. For example, the three species of mammals shown in Figure
different organisms. For example, most mammals and birds maintain 1.4h shared a common ancestor in the past, which was also a mam-
a relatively stable body temperature in spite of changing environ- mal. We will discuss evolutionary relationships later in Section 1.2
mental temperatures (Figure 1.4d), whereas reptiles and amphibians and more thoroughly in Units IV and V.
tolerate a wider fluctuation in body temperature. By comparison, all As described later in this chapter, biologists often view evolution
organisms continually regulate their cellular metabolism so nutrient within the context of genomes and proteomes. The term genome refers
molecules are used at an appropriate rate and new cellular compo- to the complete genetic composition of an organism or species. Because
nents are synthesized when they are needed. most genes encode proteins, these genetic changes are often associated
with changes in the proteome, which is the complete protein composi-
Principle 5: Living organisms grow and develop. All living tion of a cell or organism. By studying how evolution affects genomes
organisms grow and develop. Growth produces more or larger cells. and proteomes, biologists can better understand how the changes that
In plants and animals, a fertilized egg undergoes multiple cell divi- occur during evolution affect the characteristics of species. Because
sions to develop into a mature organism with many cells. Among uni- evolution is a core unifying principle in biology, we will draw your
cellular organisms such as bacteria, new cells are relatively small, and attention to it in Chapters 4 through 60 by including a brief topic that
they increase in volume by the synthesis of additional cellular compo- we call “Genomes & Proteomes Connection.” This topic connects the
nents. Development is a series of changes in the state of a cell, tissue, principle of evolution to the subject matter in each chapter.
organ, or organism, eventually resulting in organisms with a defined
Principle 9: Structure determines function. In addition to the
set of characteristics (Figure 1.4e).
preceding eight characteristics of life, biologists have identified other
principles that are important in all fields of biology. The principle
Principle 6: The genetic material provides a blueprint for
“structure determines function” pertains to very tiny biological mol-
reproduction. All living organisms have a finite life span. To
ecules and to very large biological structures. For example, at the
sustain life, organisms must reproduce, or generate offspring
microscopic level, a cellular protein called actin naturally assembles
(Figure 1.4f ). A key feature of reproduction is that offspring tend
into structures that are long filaments. The function of these filaments
to have characteristics that greatly resemble those of their parent(s).
is to provide support and shape to cells. At the macroscopic level,
How is this possible? All living organisms contain genetic material
let’s consider the feet of different birds (Figure 1.4i). Aquatic birds
composed of DNA (deoxyribonucleic acid), which provides a
have webbed feet that function as paddles for swimming. By com-
blueprint for the organization, development, and function of living
parison, the feet of nonaquatic birds are not webbed and are better
things. During reproduction, a copy of this blueprint is transmitted
adapted for grasping food, perching on branches, and running along
from parent to offspring. DNA is heritable, which means that
the ground. In this case, the structure of a bird’s feet, webbed versus
offspring inherit DNA from their parents.
nonwebbed, is a critical feature that affects their function.
As discussed in Unit III, genes, which are segments of DNA,
govern the characteristics, or traits, of organisms. Most genes are Principle 10: New properties of life emerge from complex
transcribed into a type of RNA (ribonucleic acid) molecule called interactions. In biology, when individual components in an organ-
messenger RNA (mRNA) that is then translated into a polypeptide ism interact with each other or with the external environment to create
with a specific amino acid sequence. A protein is composed of one novel structures and functions, the resulting characteristics are called
or more polypeptides. The structures and functions of proteins are emergent properties. For example, the human eye is composed of
largely responsible for the traits of living organisms. many different types of cells that are organized to sense incoming
light and transmit signals to the brain (Figure 1.4j). Our ability to
Principle 7: Populations of organisms evolve from one gener- see is an emergent property of this complex arrangement of different
ation to the next. The first six characteristics of life, which we cell types. As discussed later in this chapter, biologists use the term
have just considered, apply to individual organisms over the short systems biology to describe the study of how new properties of life
run. Over the long run, another universal characteristic of life is arise by complex interactions of its components.
biological evolution, or simply evolution, which refers to a herita-
ble change in a population of organisms from generation to genera- Principle 11: Biology is an experimental science. Biology is an
tion. As a result of evolution, populations become better adapted to inquiry process. Biologists are curious about the characteristics of living
the environment in which they live. For example, the long snout of organisms and ask questions about those characteristics. For example, a
an anteater is an adaptation that enhances its ability to obtain food, cell biologist may wonder why a cell produces a specific protein when it
namely ants, from hard-to-reach places (Figure 1.4g). Over the course is confronted with high temperature. An ecologist may ask herself why
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DANCE ON STILTS AT THE GIRLS’ UNYAGO, NIUCHI
I see increasing reason to believe that the view formed some time
back as to the origin of the Makonde bush is the correct one. I have
no doubt that it is not a natural product, but the result of human
occupation. Those parts of the high country where man—as a very
slight amount of practice enables the eye to perceive at once—has not
yet penetrated with axe and hoe, are still occupied by a splendid
timber forest quite able to sustain a comparison with our mixed
forests in Germany. But wherever man has once built his hut or tilled
his field, this horrible bush springs up. Every phase of this process
may be seen in the course of a couple of hours’ walk along the main
road. From the bush to right or left, one hears the sound of the axe—
not from one spot only, but from several directions at once. A few
steps further on, we can see what is taking place. The brush has been
cut down and piled up in heaps to the height of a yard or more,
between which the trunks of the large trees stand up like the last
pillars of a magnificent ruined building. These, too, present a
melancholy spectacle: the destructive Makonde have ringed them—
cut a broad strip of bark all round to ensure their dying off—and also
piled up pyramids of brush round them. Father and son, mother and
son-in-law, are chopping away perseveringly in the background—too
busy, almost, to look round at the white stranger, who usually excites
so much interest. If you pass by the same place a week later, the piles
of brushwood have disappeared and a thick layer of ashes has taken
the place of the green forest. The large trees stretch their
smouldering trunks and branches in dumb accusation to heaven—if
they have not already fallen and been more or less reduced to ashes,
perhaps only showing as a white stripe on the dark ground.
This work of destruction is carried out by the Makonde alike on the
virgin forest and on the bush which has sprung up on sites already
cultivated and deserted. In the second case they are saved the trouble
of burning the large trees, these being entirely absent in the
secondary bush.
After burning this piece of forest ground and loosening it with the
hoe, the native sows his corn and plants his vegetables. All over the
country, he goes in for bed-culture, which requires, and, in fact,
receives, the most careful attention. Weeds are nowhere tolerated in
the south of German East Africa. The crops may fail on the plains,
where droughts are frequent, but never on the plateau with its
abundant rains and heavy dews. Its fortunate inhabitants even have
the satisfaction of seeing the proud Wayao and Wamakua working
for them as labourers, driven by hunger to serve where they were
accustomed to rule.
But the light, sandy soil is soon exhausted, and would yield no
harvest the second year if cultivated twice running. This fact has
been familiar to the native for ages; consequently he provides in
time, and, while his crop is growing, prepares the next plot with axe
and firebrand. Next year he plants this with his various crops and
lets the first piece lie fallow. For a short time it remains waste and
desolate; then nature steps in to repair the destruction wrought by
man; a thousand new growths spring out of the exhausted soil, and
even the old stumps put forth fresh shoots. Next year the new growth
is up to one’s knees, and in a few years more it is that terrible,
impenetrable bush, which maintains its position till the black
occupier of the land has made the round of all the available sites and
come back to his starting point.
The Makonde are, body and soul, so to speak, one with this bush.
According to my Yao informants, indeed, their name means nothing
else but “bush people.” Their own tradition says that they have been
settled up here for a very long time, but to my surprise they laid great
stress on an original immigration. Their old homes were in the
south-east, near Mikindani and the mouth of the Rovuma, whence
their peaceful forefathers were driven by the continual raids of the
Sakalavas from Madagascar and the warlike Shirazis[47] of the coast,
to take refuge on the almost inaccessible plateau. I have studied
African ethnology for twenty years, but the fact that changes of
population in this apparently quiet and peaceable corner of the earth
could have been occasioned by outside enterprises taking place on
the high seas, was completely new to me. It is, no doubt, however,
correct.
The charming tribal legend of the Makonde—besides informing us
of other interesting matters—explains why they have to live in the
thickest of the bush and a long way from the edge of the plateau,
instead of making their permanent homes beside the purling brooks
and springs of the low country.
“The place where the tribe originated is Mahuta, on the southern
side of the plateau towards the Rovuma, where of old time there was
nothing but thick bush. Out of this bush came a man who never
washed himself or shaved his head, and who ate and drank but little.
He went out and made a human figure from the wood of a tree
growing in the open country, which he took home to his abode in the
bush and there set it upright. In the night this image came to life and
was a woman. The man and woman went down together to the
Rovuma to wash themselves. Here the woman gave birth to a still-
born child. They left that place and passed over the high land into the
valley of the Mbemkuru, where the woman had another child, which
was also born dead. Then they returned to the high bush country of
Mahuta, where the third child was born, which lived and grew up. In
course of time, the couple had many more children, and called
themselves Wamatanda. These were the ancestral stock of the
Makonde, also called Wamakonde,[48] i.e., aborigines. Their
forefather, the man from the bush, gave his children the command to
bury their dead upright, in memory of the mother of their race who
was cut out of wood and awoke to life when standing upright. He also
warned them against settling in the valleys and near large streams,
for sickness and death dwelt there. They were to make it a rule to
have their huts at least an hour’s walk from the nearest watering-
place; then their children would thrive and escape illness.”
The explanation of the name Makonde given by my informants is
somewhat different from that contained in the above legend, which I
extract from a little book (small, but packed with information), by
Pater Adams, entitled Lindi und sein Hinterland. Otherwise, my
results agree exactly with the statements of the legend. Washing?
Hapana—there is no such thing. Why should they do so? As it is, the
supply of water scarcely suffices for cooking and drinking; other
people do not wash, so why should the Makonde distinguish himself
by such needless eccentricity? As for shaving the head, the short,
woolly crop scarcely needs it,[49] so the second ancestral precept is
likewise easy enough to follow. Beyond this, however, there is
nothing ridiculous in the ancestor’s advice. I have obtained from
various local artists a fairly large number of figures carved in wood,
ranging from fifteen to twenty-three inches in height, and
representing women belonging to the great group of the Mavia,
Makonde, and Matambwe tribes. The carving is remarkably well
done and renders the female type with great accuracy, especially the
keloid ornamentation, to be described later on. As to the object and
meaning of their works the sculptors either could or (more probably)
would tell me nothing, and I was forced to content myself with the
scanty information vouchsafed by one man, who said that the figures
were merely intended to represent the nembo—the artificial
deformations of pelele, ear-discs, and keloids. The legend recorded
by Pater Adams places these figures in a new light. They must surely
be more than mere dolls; and we may even venture to assume that
they are—though the majority of present-day Makonde are probably
unaware of the fact—representations of the tribal ancestress.
The references in the legend to the descent from Mahuta to the
Rovuma, and to a journey across the highlands into the Mbekuru
valley, undoubtedly indicate the previous history of the tribe, the
travels of the ancestral pair typifying the migrations of their
descendants. The descent to the neighbouring Rovuma valley, with
its extraordinary fertility and great abundance of game, is intelligible
at a glance—but the crossing of the Lukuledi depression, the ascent
to the Rondo Plateau and the descent to the Mbemkuru, also lie
within the bounds of probability, for all these districts have exactly
the same character as the extreme south. Now, however, comes a
point of especial interest for our bacteriological age. The primitive
Makonde did not enjoy their lives in the marshy river-valleys.
Disease raged among them, and many died. It was only after they
had returned to their original home near Mahuta, that the health
conditions of these people improved. We are very apt to think of the
African as a stupid person whose ignorance of nature is only equalled
by his fear of it, and who looks on all mishaps as caused by evil
spirits and malignant natural powers. It is much more correct to
assume in this case that the people very early learnt to distinguish
districts infested with malaria from those where it is absent.
This knowledge is crystallized in the
ancestral warning against settling in the
valleys and near the great waters, the
dwelling-places of disease and death. At the
same time, for security against the hostile
Mavia south of the Rovuma, it was enacted
that every settlement must be not less than a
certain distance from the southern edge of the
plateau. Such in fact is their mode of life at the
present day. It is not such a bad one, and
certainly they are both safer and more
comfortable than the Makua, the recent
intruders from the south, who have made USUAL METHOD OF
good their footing on the western edge of the CLOSING HUT-DOOR
plateau, extending over a fairly wide belt of
country. Neither Makua nor Makonde show in their dwellings
anything of the size and comeliness of the Yao houses in the plain,
especially at Masasi, Chingulungulu and Zuza’s. Jumbe Chauro, a
Makonde hamlet not far from Newala, on the road to Mahuta, is the
most important settlement of the tribe I have yet seen, and has fairly
spacious huts. But how slovenly is their construction compared with
the palatial residences of the elephant-hunters living in the plain.
The roofs are still more untidy than in the general run of huts during
the dry season, the walls show here and there the scanty beginnings
or the lamentable remains of the mud plastering, and the interior is a
veritable dog-kennel; dirt, dust and disorder everywhere. A few huts
only show any attempt at division into rooms, and this consists
merely of very roughly-made bamboo partitions. In one point alone
have I noticed any indication of progress—in the method of fastening
the door. Houses all over the south are secured in a simple but
ingenious manner. The door consists of a set of stout pieces of wood
or bamboo, tied with bark-string to two cross-pieces, and moving in
two grooves round one of the door-posts, so as to open inwards. If
the owner wishes to leave home, he takes two logs as thick as a man’s
upper arm and about a yard long. One of these is placed obliquely
against the middle of the door from the inside, so as to form an angle
of from 60° to 75° with the ground. He then places the second piece
horizontally across the first, pressing it downward with all his might.
It is kept in place by two strong posts planted in the ground a few
inches inside the door. This fastening is absolutely safe, but of course
cannot be applied to both doors at once, otherwise how could the
owner leave or enter his house? I have not yet succeeded in finding
out how the back door is fastened.