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Optical Imaging
for Biomedical and
Clinical Applications
Optical Imaging
for Biomedical and
Clinical Applications
Edited by
Ahmad Fadzil Mohamad Hani and
Dileep Kumar
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does not warrant the accuracy of the text or exercises in this book. This book’s use or discussion
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MathWorks of a particular pedagogical approach or particular use of the MATLAB ® software.
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Trademark Notice: Product or corporate names may be trademarks or registered trademarks, and are
used only for identification and explanation without intent to infringe.
Names: Kumar, Dileep, 1985- author. | Hani, Ahmad Fadzil Mohamad, author.
Title: Optical imaging for biomedical and clinical applications / Dileep Kumar &
Ahmad Fadzil Mohamad Hani
Description: Boca Raton : Taylor & Francis / CRC Press, 2018. | Includes
bibliographical references.
Identifiers: LCCN 2017028543| ISBN 9781498750370 (hardback : alk. paper) |
ISBN 9781315368351 (ebook)
Subjects: | MESH: Optical Imaging--methods | Image Enhancement | Skin
Diseases--diagnostic imaging | Eye Diseases--diagnostic imaging
Classification: LCC R857.O6 | NLM WN 195 | DDC 616.07/54--dc23
LC record available at https://lccn.loc.gov/2017028543
Index................................................................................................................. 409
vii
Preface
We are motivated to compile the findings of several research and pre-
clinical observational studies at Hospital Kuala Lumpur and Hospital
Selayang that investigated the use of optical imaging techniques in der-
matology for monitoring of skin pigmentation diseases such as vitiligo
and in ophthalmology to enhance colour fundus images system in diag-
nosing retina-related eye sicknesses, such as diabetic retinopathy.
Optical imaging is an effective medical imaging technique for in vitro
and in vivo applications. It is yet a vast field, from the understanding of
effectiveness of the technique to the analysis of the images. It involves bio-
medical optics, photon propagation in tissues, bioluminescence and fluo-
rescence as well as hardware components that are required such as light
sources, filters and detectors. The discussion also includes various optical
microscopic imaging techniques along with the whole animal body imag-
ing technique specially used to image small animals.
Investigating the optical characteristics of ulcer tissues based on their
histology and cellular composition to detect their corresponding content
in ulcer colour images is central in developing algorithm that is able to
identify granulation tissue regions on the exterior of ulcers to provide an
objective assessment of the healing condition of chronic ulcers. This is
very significant in detecting early stages of ulcer healing especially where
granulation tissue is spreading slowly over the ulcer surface and cannot
be detected visually. This work essentially utilises the optical imaging
technique to characterise haemoglobin pigments and determining its con-
tent within and below the visible surface of ulcers. Identified regions of
haemoglobin distribution can then be utilised as image markers to iden-
tify areas of granulation tissue indicating the ulcer healing progression
and reflects on the efficacy of the ulcer management and treatment.
The physician’s global assessment of skin pigmentary skin disorders
such as vitiligo, requires visual inspection but pigmentation changes due
to treatment and takes 3 to 6 months to discern visually by the derma-
tologist. Therapeutic responses of vitiligo treatments can be different
from patient to patient and are typically very slow and time consuming.
Segmentation of vitiligo lesion areas can be performed after the separation
ix
x Preface
process that produces skin images due to melanin and haemoglobin only.
The repigmentation progression due to treatment of the lesion areas is
measured objectively. Measurements generate equivalent PGA scores that
are useful to physicians in evaluating the efficacy of the treatment in a
shorter time period for example in 6 weeks.
In colour fundus images, the low contrast between the blood vessels
and the varying contrast of its surrounding background makes it visually
difficult to determine the retinal vasculature accurately. In addition, fun-
dus images are found to have both multiplicative and additive noise, and
can contain artefacts. This contrast problem can be overcome by using
fundus fluorescein angiography (FFA) that creates fundus images of high
contrast; however, because of its invasive nature, injecting contrast agent
is not a preferred method. RETICA, a non-invasive image improvement
scheme is developed and addresses the issue of low and varying contrast
image, through RETINEX for contrast normalisation and ICA for contrast
enhancement.
With TDCE-RETICA, the presence of noise in the fundus image is also
addressed. The novelty of this technique is that the noise level has been
effectively reduced by TDCE. RETICA with TDCE provides a mecha-
nism to reduce noise and resolve low and varied contrast in colour fun-
dus images and provides an efficient and non-invasive manner for retinal
fundus image analysis and interpretation. It is a practical non-invasive
alternative to the invasive fluorescein angiogram for retinal imaging and
further analysis and interpretation for diagnosis and monitoring of vision
threatening complications.
It is a difficult task to localise suitable veins in patients having certain
physiological characteristics such as dark skin tone, deep veins and the
presence of scars, tattoos or hair on the skin. To overcome the problem
of difficult venous access, several techniques can be used. As NIR imag-
ing is considered to be the most suitable among the techniques in terms
of usability, cost and efficiency, the optimisation of NIR illumination in
order to overcome the difficulty of veins localisation for different skin
tone subjects is presented. Hyperspectral venous image data acquired
from 252 subjects, arrived at an optimised range of illumination wave-
lengths. It was concluded that the wavelength range of 800–850 nm is the
optimum range for illumination in NIR imaging for all skin tone subjects.
We hope the book addresses problems from the medical sciences to
engineering principles transcending disciplines and professions.
xiii
Editors
Professor Ahmad Fadzil Mohamad Hani is an expert in the area of
image processing and computer vision. He graduated with a BSc (1st Class
Honours) in electronic engineering in 1983, earned his MSc in telemat-
ics in 1984 and PhD in image processing in 1991 from the University of
Essex, UK. He has been actively involved in machine vision and medical
imaging research since the early 1990s. His research activities range from
fundamental signal and image processing to pattern recognition to devel-
oping vision and image analysis applications in the biomedical imaging
area such as in retinal vasculature imaging for grading severity of dia-
betic retinopathy and digital analysis leading to objective assessment for
treatment efficacy of ulcer wounds and psoriasis lesions, and bio-optics for
skin pigmentation analysis. His current research challenges are develop-
ing new analysis techniques for early osteoarthritis and drug addiction
using MRI (magnetic resonance imaging)/MRS (magnetic resonance spec-
troscopy), and neuroergonomics using fNIRS (functional near-infrared
spectroscopy). He has authored over 200 research articles in journals and
conference proceedings, granted several patents and won several awards
for his work. He is a senior professor and heads the Centre for Intelligent
Signal & Imaging Research (CISIR), a Ministry of Higher Education Higher
Institution Centre of Excellence at Universiti Teknologi PETRONAS.
Professor Fadzil is a Fellow of the Academy of Sciences, Malaysia and
a Fellow of Institution of Engineers Malaysia. He is a registered profes-
sional engineer with Board of Engineers, Malaysia and a senior member of
the Institution of Electrical & Electronic Engineers Inc. He is a member of
the Governing Board of the International Neuroinformatics Coordinating
Facility (INCF). In industry, he is a member of the Board of Directors of
ViTrox Corporation Bhd., an R&D and public-listed company that develops
and manufactures automated vision inspection systems. He is also a mem-
ber of the Board of Directors of Prince Court Medical Centre, Kuala Lumpur.
xv
xvi Editors
xvii
xviii Contributors
Contents
1.1 Introduction................................................................................................ 1
1.2 Biomedical optics....................................................................................... 4
1.2.1 Background on photon propagation........................................... 4
1.2.2 Fluorescence and bioluminescence phenomenon..................... 6
1.3 Optical imaging hardware....................................................................... 6
1.3.1 Light sources................................................................................... 7
1.3.1.1 Broadband lamps............................................................ 7
1.3.1.2 Light emitting diodes..................................................... 7
1.3.1.3 Gas or solid-state lasers.................................................. 8
1.3.2 Filters used in optical imaging.................................................... 8
1.3.3 Photon detectors............................................................................. 8
1.3.3.1 Single-channel photon detectors.................................. 9
1.3.3.2 Multichannel photon detectors..................................... 9
1.3.4 Optical imaging modalities........................................................ 10
1.4 Optical imaging techniques based on microscopy............................. 14
1.4.1 Fluorescence microscopy............................................................ 15
1.4.2 Confocal microscopy................................................................... 15
1.4.3 Multiphoton imaging.................................................................. 16
1.4.4 Stimulated emission depletion.................................................. 17
1.4.5 Other techniques.......................................................................... 18
1.5 Optical imaging techniques for whole body animal imaging.......... 19
1.6 Summary................................................................................................... 21
References........................................................................................................... 21
1.1 Introduction
Medical imaging has brought revolutionary changes to the medical diag-
nostic field. In medical radiology, various imaging modalities are being
used to study the biological view of different anatomical and molecular
structures of human and animals for diagnostics [1]. Various imaging
1
2 Optical imaging for biomedical and clinical applications
PET and SPECT involve the use of contrast agent or radioactive trac-
ers that make these modalities invasive. Nuclear imaging modalities
are widely used for animal imaging in preclinical environment [7].
MRI has the potential to visualise internal tissues as well as measure
molecular changes corresponding to the internal tissues in the body.
However, MRI for the measurement of chemical changes requires con-
trast enhance agents that is injected prior to MR (magnetic resonance)
scanning in subjects [8]. So far, optical imaging modalities using visible,
ultraviolet (UV) and infrared light and the special properties of photons
are noninvasive and have proven to be effective in visualising details
of internal tissues and organs as small as cells and molecules level. It
also takes advantage of various colors of light to visualise and measure
several properties of tissue at the same time while other modalities are
unable to do so [6].
Optical imaging techniques can be broadly classified as biolumines-
cence imaging and fluorescence imaging [9]. Bioluminescence imaging is
used for imaging molecules in small animals where the light is emitted
into living organisms. The discovery of fluorescence and fluorescence
microscopy has been instrumental in imaging the single-cell structures
at the microscopic levels with the help of microscopic lenses. Fluorescent
images are obtained using a light source of specific wavelength to excite
the targeted molecule, which in turn emits light of longer wavelength
than absorbed. This emitted light is used to generate fluorescent optical
images. Optical imaging techniques being investigated meet the chal-
lenges and improvement in molecular imaging in preclinical examina-
tion and patient concern. Combination of targeted molecules in vivo and
optical contrast agents imaging sensitivity are driven in parts for molec-
ular imaging in order to emphasise an optical imaging systems [10]. By
combining optical imaging techniques such as bioluminescence imaging
and fluorescence with near-infrared (NIR) spectrum, the signal-to-back-
ground ratio for detecting specific molecular signals can be increased and
similarly can be achieved with other molecular imaging modalities. In
advanced cases, a fundamentally simplified gene expression imaging is
produced using bioluminescent and fluorescent proteins that act as syn-
thesised optical active biomarkers. It is also noted that optical imaging
with its advancements can now be used in clinical practices for some
applications and it is widely investigated for future research directions
toward its application in clinics.
In this chapter, biomedical optics, photon propagation in tissues, bio-
luminescence and fluorescence are discussed followed by the parameters
and components required for optical imaging such as light sources, filters,
and detectors. In addition, microscopic imaging techniques for whole ani-
mal body imaging using optical imaging are discussed.
4 Optical imaging for biomedical and clinical applications
µt = µs + µa (1.1)
µs′ = µs (1 − g ) (1.2)
Reticular
Deep
101
Fat
100
10–1
400 500 600 700 800 900 1000
Wavelength (nm)
Figure 1.1 Wavelength vs. absorption coefficient for seven layers of skin.
(Adapted from A. P. Dhawan, B. D’Alessandro, and X. Fu, Biomedical Engineering,
IEEE Reviews in, vol. 3, pp. 69–92, 2010.)
1
MFP = (1.3)
µt
1
MFP = (1.4)
µs
Transport TMFP in terms of µs′ for which the beam has undergone
several scattering is expressed by
1
TMFP = (1.5)
µs′
6 Optical imaging for biomedical and clinical applications
images, (2) filters form an integral part of optical imaging system that gen-
erally removes any artefacts produced during acquisition, and (3) optical
detectors or photon detectors as the source component required to detect
the optical beams that is being reflected from light source after filtration.
The following subsections describe the three components of an optical
imaging system.
are generally classified into two groups namely, single- and multichannel
detectors. Depending on the application, the choice of detector is made by
considering several factors such as wavelength range, signal level, physi-
cal size and the data acquisition speed.
Silicon Silicon
dioxide Silicon dioxide
Silicon
Silicon dioxide
Incident
light
Thinned Polysilicon
silicon gate
Figure 1.2 CCD sensor array types. (a) CCD with front illumination, (b) CCD
with back illumination and (c) back illuminated with deep depletion CCD.
AUSTRIA-HUNGARY: A. D. 1901.
Parliamentary elections.
Weakening of the Clerical and Anti-Semitic parties.
Gains for the ultra-radical German parties.
Disorderly opening of the Reichsrath.
Speech of the Emperor from the throne.
{46}
{47}
----------AUSTRIA-HUNGARY: End--------
AUTONOMY, Constitutional:
Granted by Spain to Cuba and Porto Rico.
AYUNTAMIENTOS.
B.
BACHI,
BASHEE ISLANDS, The American acquisition of.
BAJAUR.
J. D. Bourchier,
Montenegro and her Prince
(Fortnightly Review, December, 1898).
Telegram,
Reuter's Agency.
BARCELONA: A. D. 1895.
Student riots.
BAROTSILAND:
British Protectorate proclaimed.
BECHUANALAND, British:
Annexation to Cape Colony.
BECHUANALAND, British:
Partial conveyance to the British South Africa Company.
BEET SUGAR.
BEHRING SEA.
{50}
BELGIUM: A. D. 1894-1895.
The first election under the new constitution.
Victory of the Catholics and surprising Socialist gains.
See in volume 1
CONSTITUTION OF BELGIUM).
See in volume 3
NETHERLANDS (BELGIUM): A. D. 1892-1893)