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Medical 2nd Edition
Statistics
An A–Z Companion
Medical 2nd Edition
Statistics
An A–Z Companion
Filomena Pereira-Maxwell
MBBS MSc Clinical Tropical Medicine MSc Medical Statistics
Washington, USA
CRC Press
Taylor & Francis Group
6000 Broken Sound Parkway NW, Suite 300
Boca Raton, FL 33487-2742
This book contains information obtained from authentic and highly regarded sources. Reasonable efforts have been
made to publish reliable data and information, but the author and publisher cannot assume responsibility for the
validity of all materials or the consequences of their use. The authors and publishers have attempted to trace the
copyright holders of all material reproduced in this publication and apologize to copyright holders if permission to
publish in this form has not been obtained. If any copyright material has not been acknowledged please write and
let us know so we may rectify in any future reprint.
Except as permitted under U.S. Copyright Law, no part of this book may be reprinted, reproduced, transmitted, or
utilized in any form by any electronic, mechanical, or other means, now known or hereafter invented, including
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Trademark Notice: Product or corporate names may be trademarks or registered trademarks, and are used only
for identification and explanation without intent to infringe.
Preface ix
Acknowledgements xi
Symbols xiii
A–Z Guide 1
References 385
Core references 385
Core and additional references 385
Illustrative examples 394
Other dictionaries of medical statistics, epidemiology and
research methodology 398
Further reading 398
Links and websites 399
vii
Preface
Motivation: This A–Z Companion is intended primarily for medical students and health care
professionals seeking to deepen their understanding of the role of medical statistics in
answering pertinent questions in the medical and public health fields. It is my hope it will
also be useful to those with a more solid background in medical statistics and epidemiol-
ogy. The book seeks to provide explanations for terms frequently encountered by readers
of the medical literature and by researchers, in such a way as to clarify their meaning
and applicability, and show the inter-dependency between various important concepts. It
aims to establish a connection between the proper treatment of data generated by research
investigations and the ability to rely on study results to make impactful and consequential
medical decisions. Included terminology relates to research methodology in the context of
clinical and epidemiological investigations.
Background: The need for a collection of concise explanations of terms frequently encoun-
tered in medical journals became apparent during critical appraisal workshops organized
by the North Thames Research Appraisal Group (NTRAG) in the UK, and led to the first
edition of the present text, published in 1998. Much has changed since then, and many
more excellent texts are now available that address the needs of the medical and allied
professions, as well as of researchers and statisticians. Adding to the rather ubiquitous
concepts of normality, randomization, standard errors, P-values, risk, study design, to
name just a few, terms such as meta-analysis, overdispersion, multilevel modelling, cluster
randomized trials, Bayesian inference and many others are more often seen in the medi-
cal literature, and an understanding of these concepts remains of central importance to
the practices of critical appraisal of scientific evidence and evidence-based medicine and
public health. Another development of the last 20 years has been the proliferation of col-
laborative efforts and networks aiming to standardize the reporting of research methods
and findings, and systematize the best evidence under useful clinical guidelines. Umbrella
organizations such as EQUATOR, GRADE and Cochrane have played an important role
in this regard.
Cross-referencing between terms: This book has been structured as a dictionary, with sub-
stantial cross-referencing between the various entries (shown as bolded terms). It is hoped
this will decrease the need for unnecessary repetitions. The intention with this presentation
style is more to provide a ‘word cloud’ that reinforces the interrelation between concepts
and methods, than a prompting for the constant back and forth between definitions. The
reader will be the judge of the cross-reference checking that needs to be done. Connections
between various terms are reinforced also by inviting the reader to consider additional
entries for related material and for comparing and contrasting definitions. It is hoped the
ix
x Preface
recognition of patterns of meaning and connection will help solidify fundamental concepts
and principles in a clear and enduring way.
Order of terms: The placement of terms in the A–Z is based on word-by-word alphabetic
order that considers hyphenated terms as two separate words. Two-word terms such as
cause–effect and P-value should be searched on the basis of the first word of the term, and
only then the second word. A few examples:
Structure of terms: Some terms such as post-test odds and log-linear model are hyphenated,
others are not (pretest odds, pretreatment measurement). This reflects orthographic and
style conventions and rules and long-standing usage by authors. The reader is encour-
aged to look up alternative wordings whenever a term is not first encountered (e.g. if look-
ing for loglinear model, look for log-linear model and follow the rule above to find the
term after Log likelihood ratio instead of after Logit transformation). Also, in looking up
cross-referenced bolded terms, one or more terms may need to be looked up. For example,
‘retrospective cohort study’ makes reference to Retrospective study and Cohort study; ‘chi-
squared test statistic’ directs the reader to the terms Chi-squared test and Test statistic.
References and illustrative examples: Textbooks and articles consulted are listed as Core and
additional references. Their mention under the various entries serves to inform the reader
who requires additional or more specialized information, and equally importantly to rec-
ognize a source of information that was included in the A–Z. These references include a
mix of texts that appeal to a non-statistical audience (many of which are listed as Core
references) and more specialized texts that may need to be consulted in addition. A signifi-
cant number of concepts, methods and terms is illustrated with mostly examples from the
medical literature. Sources for illustrative examples are listed separately in the References
section.
Filomena Pereira-Maxwell
Washington, DC
Acknowledgements
Firstly, my thanks to Dr. Joanna Koster, Senior Publisher at CRC Press/Taylor & Francis
Group, who commissioned the writing of the A–Z Companion and patiently supported
its various revisions through completion. Thanks also to Julia Molloy for assistance with
obtaining permissions for the various illustrative examples.
My sincere thanks to the team led by Paul Bennett for their invaluable help and support
through the production phase, and the quality of their work. I would like to thank Dr. Ruth
Maxwell (copy editing) for her steadfast commitment to this project and Paul Bennett for
his kind and competent support while supervising the entire process.
Professors Martin Bland and Basant Puri, and Dr. Simon Day, have all reviewed the text at
different stages and made significant contributions with their comments, edits and sugges-
tions. They have my gratitude and appreciation. Any errors in the text are the sole respon-
sibility of the author.
I also want to reiterate my thanks to Professors Stephen Evans (who first suggested this proj-
ect to me over 20 years ago) and Richard Morris for their helpful assistance with reviewing
the first edition of the A–Z. Former colleagues at Barts and The London School of Medicine
and Dentistry (Queen Mary University of London) and NTRAG (North Thames Research
Appraisal Group) also provided helpful assistance and encouraging support. Richard
Harris, former NTRAG project manager, played a crucial role in finding a publisher for the
A–Z’s first edition. My continued gratitude to Richard and to Georgina Bentliff, formerly
Director of Medical and Health Science Publishing at Hodder Arnold.
Thanks also to my husband Ray and to family and friends for kind words of encouragement
along the way.
Lastly, but certainly not least, my thanks to the authors of the texts consulted during the
writing of the A–Z, sources of knowledge and wisdom, to the researchers and experts
whose work was used to illustrate concepts and methods, and to the reader, source of
motivation and ever-present guiding star.
xi
Symbols
α Lower case Greek letter alpha. See alpha, intercept, Cronbach’s alpha.
β Lower case Greek letter beta. See beta, regression coefficient.
Δ Upper case Greek letter delta. See Glass’s Delta.
ε Lower case Greek letter epsilon. See autoregressive model (error term), residuals.
η Lower case Greek letter eta. See eta squared (η2), prognostic index.
κ Lower case Greek letter kappa. See kappa statistic.
λ Lower case Greek letter lambda. See rate.
μ Lower case Greek letter mu, represents the population mean.
ν Lower case Greek letter nu, represents degrees of freedom or df.
π Lower case Greek letter pi, represents the prevalence or proportion in the
population with a given characteristic or disease.
ρ Lower case Greek letter rho. See Spearman’s correlation coefficient.
σ Lower case Greek letter sigma, represents the population standard deviation.
Σ Upper case Greek letter sigma, represents summation (e.g. in the formula for
the mean).
τ Lower case Greek letter tau. See Kendall’s correlation coefficient.
χ Lower case Greek letter chi. See chi-squared (χ2) distribution, chi-squared (χ2)
test.
ω Lower case Greek letter omega. See omega squared (ω2).
! See factorial.
∞ Symbol for infinity (e.g. minus infinity, −∞, or plus infinity, +∞).
√ The square root of a quantity, as in standard deviation [=√(variance)].
Cf. Compare and contrast.
2 × 2 table
See two-by-two (2 × 2) table.
xiii
A
ABI
Abbreviation for absolute benefit increase.
Abscissa
The value on the horizontal or x-axis for a datum point that is plotted on a two-dimensional
graph. An individual or study unit is identified on such a graph by its coordinates, i.e. by
the point of intersection between the value of the abscissa and the value of the ordinate.
Absolute change
As opposed to relative change or percentage change from baseline. See change scores.
Absolute dispersion
The extent of variability or dispersion displayed by a set of measurements. Absolute
dispersion is usually calculated from the square of the differences between the values of
a quantitative variable (typically, a continuous variable) and its mean (see variance).
The frequently used standard deviation (the square root of the variance) measures
absolute dispersion, and is expressed in the same units as the individual measurements.
The corresponding measure of relative dispersion is the coefficient of variation
(also known as coefficient of dispersion), a unit-less measure expressed as a fraction
or percentage. For a meaningful assessment of its magnitude, a measure such as the
standard deviation must be presented with the value for the mean. See also measures
of dispersion.
1
2 Absolute effect
Absolute effect
The magnitude and direction of a measure of effect, which expresses in net terms the
estimated effect of a given treatment or exposure. Measures of absolute effect are calcu-
lated as differences between risks and rates (or between means, although the terminology
is not often used with quantitative outcomes). The absolute risk reduction and the absolute
risk increase (both absolute risk differences) are examples of measures of absolute effect,
as is the absolute benefit increase. This is in contrast to measures of relative effect such
as the excess relative risk, which gives absolute effect as a fraction of baseline risk or rate,
and to simple ratios such as the risk ratio, which measures the strength of association
between treatments and outcomes, or exposures and disease. See also standardized dif-
ference, effect size. Absolute effect measures are sometimes expressed as the absolute
value of the difference; direction of effect must nonetheless be stated.
Absolute frequency
See frequency.
Absolute risk
A term that is used somewhat inconsistently to mean both risk (in a single exposure or
treatment group) and absolute risk difference or attributable risk (as opposed to rela-
tive risk or risk ratio).
c a
ARD = risk0 − risk1 = −
c+d a+b
where risk0 is the risk of the event in the control or unexposed group (baseline risk) and
risk1 is the risk in the treatment, intervention or protective exposure group. In this instance,
the absolute risk difference may be referred to as an absolute risk reduction, or it may
14 Antilog
specified for each time point or occasion over the length of a time series or longitudinal
period (SKRONDAL & RABE-HESKETH, 2004).
Antilog
A value that has been back-transformed from a logarithmic scale to the arithmetic scale
through the exponentiation function. See also logarithmic transformation, geometric
mean.
APACHE score
Acronym for Acute Physiology and Chronic Health Evaluation score (KNAUS et al., 1985).
A severity of illness classification system, which was developed as a means to provide
an initial severity stratification of patients admitted to the intensive care unit (ICU), based
on patient’s age and chronic health status, and a number of physiological measurements
pertaining to the acute illness (and measured within 24 hours of admission), specifically:
pulse, mean blood pressure, body temperature, respiratory rate, PaO2 or A-aDO2 (depend-
ing on value of FiO2), arterial pH, haematocrit, white blood cell count, serum creatinine,
serum sodium and serum potassium, in addition to the Glasgow Coma Score (GCS) (for
the APACHE II score). The total APACHE II score is the sum of age points, chronic health
points, and the total acute physiology score. The overall score lies between 0 and 71 for
APACHE II, 0 and 299 for APACHE III, and 0 and 286 for APACHE IV, a zero score being
the lowest risk of death. In the US, APACHE scores have been incorporated into logistic
regression models to predict mortality based on data from large series of consecutive ICU
patients (KNAUS et al., 1991). APACHE scores have been used for clinical decision-making
and case mix assessment. Other ICU severity of illness and prognostic scoring systems
include the Simplified Acute Physiologic Score (SAPS), the Mortality Prediction Model
(MPM) and the Sequential Organ Failure Assessment score (SOFA). See also VINCENT
& MORENO (2010); composite score, risk score, prognostic index, predictive model.
Approximation
The application of statistical methods based on a given probability distribution to data that are
more accurately described by a different probability distribution. For example, the Poisson and
binomial distributions (discrete distributions) are frequently approximated by the Normal
distribution (continuous) for easier computation of significance tests and confidence inter-
vals. A common application is the chi-squared (χ2) test, which is based on the extent to which
observed (O) and expected (E) frequencies in each cell of a contingency table differ. Given a
table’s marginal totals (and an unrestricted sampling scheme) and the assumption that the
null hypothesis is true, the observed frequency in each cell is from a Poisson distribution with
parameters defined by the expected frequency. This may be approximated by a Normal distri-
bution (with mean E and standard deviation (SD) √E), if E is not too small. As the test statistic
(X2) is based on the square of these O vs. E differences, it then follows a χ2 distribution with
the appropriate number of degrees of freedom. Non-parametric tests may also be based on
Normal approximations. A distinction should be made between the sampling distribution of
an estimate, which may be approximated by a Normal distribution, and the distribution of a
set of measurements, which may have an approximately Normal distribution (ALTMAN, 1991).
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BYRON AND WORDSWORTH
A Fragment
The London Weekly Review.]
[December 6, 1828.
‘If to do were as easy as to teach others what were good to be done, chapels had
been churches, and poor men’s cottages princes’ palaces.’
Now, was the piety in this case the less real, because it had been
forgotten for a moment? Or even if this motive should not prove the
strongest in the end, would this therefore show that it was none,
which is necessary to the argument here combated, or to make out
our little plump priest a very knave! A priest may be honest, and yet
err; as a woman may be modest, and yet half-inclined to be a rake. So
the virtue of prudes may be suspected, though not their sincerity.
The strength of their passions may make them more conscious of
their weakness, and more cautious of exposing themselves; but not
more to blind others than as a guard upon themselves. Again,
suppose a clergyman hazards a jest upon sacred subjects, does it
follow that he does not believe a word of the matter? Put the case
that any one else, encouraged by his example, takes up the banter or
levity, and see what effect it will have upon the reverend divine. He
will turn round like a serpent trod upon, with all the vehemence and
asperity of the most bigoted orthodoxy. Is this dictatorial and
exclusive spirit then put on merely as a mask and to browbeat
others? No; but he thinks he is privileged to trifle with the subject
safely himself, from the store of evidence he has in reserve, and from
the nature of his functions; but he is afraid of serious consequences
being drawn from what others might say, or from his seeming to
countenance it; and the moment the Church is in danger, or his own
faith brought in question, his attachment to each becomes as visible
as his hatred to those who dare to impugn either the one or the other.
A woman’s attachment to her husband is not to be suspected, if she
will allow no one to abuse him but herself! It has been remarked,
that with the spread of liberal opinions, or a more general scepticism
on articles of faith, the clergy and religious persons in general have
become more squeamish and jealous of any objections to their
favourite doctrines: but this is what must follow in the natural course
of things—the resistance being always in proportion to the danger;
and arguments and books that were formerly allowed to pass
unheeded, because it was supposed impossible they could do any
mischief, are now denounced or prohibited with the most zealous
vigilance, from a knowledge of the contagious nature of their
influence and contents. So in morals, it is obvious that the greatest
nicety of expression and allusion must be observed, where the
manners are the most corrupt, and the imagination most easily
excited, not out of mere affectation, but as a dictate of common sense
and decency.
One of the finest remarks that has been made in modern times, is
that of Lord Shaftesbury, that there is no such thing as a perfect
Theist, or an absolute Atheist; that whatever may be the general
conviction entertained on the subject, the evidence is not and cannot
be at all times equally present to the mind; that even if it were, we
are not in the same humour to receive it: a fit of the gout, a shower of
rain shakes our best-established conclusions; and according to
circumstances and the frame of mind we are in, our belief varies
from the most sanguine enthusiasm to lukewarm indifference, or the
most gloomy despair. There is a point of conceivable faith which
might prevent any lapse from virtue, and reconcile all contrarieties
between theory and practice; but this is not to be looked for in the
ordinary course of nature, and is reserved for the abodes of the blest.
Here, ‘upon this bank and shoal of time,’ the utmost we can hope to
attain is, a strong habitual belief in the excellence of virtue, or the
dispensations of Providence; and the conflict of the passions, and
their occasional mastery over us, far from disproving or destroying
this general, rational conviction, often fling us back more forcibly
upon it, and like other infidelities and misunderstandings, produce
all the alternate remorse and raptures of repentance and
reconciliation.
It has been frequently remarked that the most obstinate heretic or
confirmed sceptic, witnessing the service of the Roman Catholic
church, the elevation of the host amidst the sounds of music, the
pomp of ceremonies, the embellishments of art, feels himself spell-
bound: and is almost persuaded to become a renegade to his reason
or his religion. Even in hearing a vespers chaunted on the stage, or in
reading an account of a torch-light procession in a romance, a
superstitious awe creeps over the frame, and we are momentarily
charmed out of ourselves. When such is the obvious and involuntary
influence of circumstances on the imagination, shall we say that a
monkish recluse surrounded from his childhood by all this pomp, a
stranger to any other faith, who has breathed no other atmosphere,
and all whose meditations are bent on this one subject both by
interest and habit and duty, is to be set down as a rank and heartless
mountebank in the professions he makes of belief in it, because his
thoughts may sometimes wander to forbidden subjects, or his feet
stumble on forbidden ground? Or shall not the deep shadows of the
woods in Vallombrosa enhance the solemnity of this feeling, or the
icy horrors of the Grand Chartreux add to its elevation and its purity?
To argue otherwise is to misdeem of human nature, and to limit its
capacities for good or evil by some narrow-minded standard of our
own. Man is neither a God nor a brute; but there is a prosaic and a
poetical side to everything concerning him, and it is as impossible
absolutely and for a constancy to exclude either one or the other
from the mind, as to make him live without air or food. The ideal, the
empire of thought and aspiration after truth and good, is inseparable
from the nature of an intellectual being—what right have we then to
catch at every strife which in the mortified professors of religion the
spirit wages with the flesh as grossly vicious, or at every doubt, the
bare suggestion of which fills them with consternation and despair,
as a proof of the most glaring hypocrisy? The grossnesses of religion
and its stickling for mere forms as its essence, have given a handle,
and a just one, to its impugners. At the feast of Ramadan (says
Voltaire) the Mussulmans wash and pray five times a day, and then
fall to cutting one another’s throats again with the greatest
deliberation and good-will. The two things, I grant, are sufficiently at
variance; but they are, I contend, equally sincere in both. The
Mahometans are savages, but they are not the less true believers—
they hate their enemies as heartily as they revere the Koran. This,
instead of showing the fallacy of the ideal principle, shows its
universality and indestructible essence. Let a man be as bad as he
will, as little refined as possible, and indulge whatever hurtful
passions or gross vices he thinks proper, these cannot occupy the
whole of his time; and in the intervals between one scoundrel action
and another he may and must have better thoughts, and may have
recourse to those of religion (true or false) among the number,
without in this being guilty of hypocrisy or of making a jest of what is
considered as sacred. This, I take it, is the whole secret of
Methodism, which is a sort of modern vent for the ebullitions of the
spirit through the gaps of unrighteousness.
We often see that a person condemns in another the very thing he
is guilty of himself. Is this hypocrisy? It may, or it may not. If he
really feels none of the disgust and abhorrence he expresses, this is
quackery and impudence. But if he really expresses what he feels,
(and he easily may, for it is the abstract idea he contemplates in the
case of another, and the immediate temptation to which he yields in
his own, so that he probably is not even conscious of the identity or
connexion between the two,) then this is not hypocrisy, but want of
strength and keeping in the moral sense. All morality consists in
squaring our actions and sentiments to our ideas of what is fit and
proper; and it is the incessant struggle and alternate triumph of the
two principles, the ideal and the physical, that keeps up this ‘mighty
coil and pudder’ about vice and virtue, and is one great source of all
the good and evil in the world. The mind of man is like a clock that is
always running down, and requires to be as constantly wound up.
The ideal principle is the master-key that winds it up, and without
which it would come to a stand: the sensual and selfish feelings are
the dead weights that pull it down to the gross and grovelling. Till the
intellectual faculty is destroyed, (so that the mind sees nothing
beyond itself, or the present moment,) it is impossible to have all
brutal depravity: till the material and physical are done away with,
(so that it shall contemplate everything from a purely spiritual and
disinterested point of view,) it is impossible to have all virtue. There
must be a mixture of the two, as long as man is compounded of
opposite materials, a contradiction and an eternal competition for
the mastery. I by no means think a single bad action condemns a
man, for he probably condemns it as much as you do; nor a single
bad habit, for he is probably trying all his life to get rid of it. A man is
only thoroughly profligate when he has lost the sense of right and
wrong; or a thorough hypocrite, when he has not even the wish to be
what he appears. The greatest offence against virtue is to speak ill of
it. To recommend certain things is worse than to practise them.
There may be an excuse for the last in the frailty of passion; but the
former can arise from nothing but an utter depravity of disposition.
Any one may yield to temptation, and yet feel a sincere love and
aspiration after virtue: but he who maintains vice in theory, has not
even the conception or capacity for virtue in his mind. Men err:
fiends only make a mock at goodness.
THE SAME SUBJECT CONTINUED
The Atlas.]
[March 8, 1829.
As there are two kinds of rhyme, one that is rhyme to the ear, and
another to the eye only; so there may be said to be two kinds of
poetry, one that is a description of objects to those who have never
seen or but slightly studied them; the other is a description of objects
addressed to those who have seen and are intimately acquainted with
them, and expressing the feeling which is the result of such
knowledge. It is needless to add that the first kind of poetry is
comparatively superficial and common-place; the last profound,
lofty, nay often divine. Take an example (one out of a thousand) from
Shakspeare. In enumerating the wished-for contents of her basket of
flowers, Perdita in the Winter’s Tale mentions among others——
‘Daffodils
That come before the swallow dares, and take
The winds of March with beauty; violets dim,
But sweeter than the lids of Juno’s eyes
Or Cytherea’s breath; pale primroses
That die unmarried ere they can behold
Bright Phœbus in his strength, a malady
Most incident to maids.’
This passage which knocks down John Bull with its perfumed and
melting softness, and savours of ‘that fine madness which our first
poets had,’ is a mystery, an untranslateable language, to all France:
Racine could not have conceived what it was about—the stupidest
Englishman feels a certain pride and pleasure in it. What a privilege
(if that were all) to be born on this the cloudy and poetical side of the
Channel! We may in part clear up this contradiction in tastes by the
clue above given. The French are more apt at taking the patterns of
their ideas from words; we, who are slower and heavier, are obliged
to look closer at things before we can pronounce upon them at all,
which in the end perhaps opens a larger field both of observation and
fancy. Thus the phrase ‘violets dim,’ to those who have never seen
the object, or who, having paid no attention to it, refer to the
description for their notion of it, seems to convey a slur rather than a
compliment, dimness being no beauty in itself; so this part of the
story would not have been ventured upon in French or tinsel poetry.
But to those who have seen, and been as it were enamoured of the
little hedge-row candidate for applause, looking at it again and again
(as misers contemplate their gold—as fine ladies hang over their
jewels), till its image has sunk into the soul, what other word is there
that (far from putting the reader out of conceit with it) so well recals
its deep purple glow, its retired modesty, its sullen, conscious
beauty? Those who have not seen the flower cannot form an idea of
its character, nor understand the line without it. Its aspect is dull,
obtuse, faint, absorbed; but at the same time soft, luxurious, proud,
and full of meaning. People who look at nature without being
sensible to these distinctions and contrarieties of feeling, had better
(instead of the flower) look only at the label on the stalk.
Connoisseurs in French wines pretend to know all these depths and
refinements of taste, though connoisseurs in French poetry pretend
to know them not. To return to our text——
‘Violets dim,
But sweeter than the lids of Juno’s eyes
Or Cytherea’s breath.’
The Atlas.]
[March 15, 1829.