Professional Documents
Culture Documents
ORGANISMS
• H A C E K ( H A E M O P H I L U S , A G G R E G AT E R ( A C T I N O B A C I L L U S ) , C A R D I O B A C T E R I U M ,
EIKENELLA, KINGELLA)
• RECOVERED FROM SPECIAL MEDIA : BRUCELLA, BORDETELLA, FRANCISELLA,
LEGIONELLA
• MICROAEROPHILES: CAMPYLOBACTER AND HELICOBACTER
HAEMOPHILUS
• Mostly are normal flora of upper respiratory tract and oral cavity
• NM, Non spore forming, facultative anaerobes
• MOST PLEOMORPHIC BACTERIA (Coccobacilli)
• Most species are catalase and oxidase +
• Fastidious organism
• Preferred Incubation: 35-37C w/ 5-10% CO2 (capnophilic)
• Blood loving requiring blood factors: X and V
– X factor /Factor I/HEMIN : Heat stable from degradation of Hemoglobin
– V factor/ Factor II/ NAD: Heat labile from S. aureus, Neisseria, S.
pneumoniae, Yeast and Potato extract
• MEDIA:
– CHOC AGAR w/ X and V : inactivates NADases
– 5% Horse blood/Rabbit Blood agar
– SBA: NO GROWTH ‘’NOT SUITBALE’’ but when use needs NAD by
’’SATTELITISM” from organism producing NAD
• HAEMOPHILUS METHOD OF ID:
– HAEMOLYTIC REACTION ON HORSE BLOOD AGAR: If hemolytic or
Not
– GROWTH REQUIREMENT FOR X AND V FACTOR, D- TEST/
PORPHYRIN TEST
– CARBOHYDRATE FERMENTATION TEST
SPECIES X FACTOR V BETA- D-ALA CHO fermentation
FACTOR HEMOLY
SIS
H. influenzae + + - - Glucose
H. haemolyticus + + + - Glucose and Fructose (WEAK)
H. aegypticus + + - - Glucose
H. - + - + Glucose, Sucrose, Fructose
Parainfluenzae
H. - + + + Glucose, Sucrose, Fructose
parahaemolyticus
H. paraaprohilus - + - + G,S, F, LACTOSE
H. aprophilus - - - + G, S, F, LACTOSE
H. ducreyi + - - - GLUCOSE
A. aprophilus and A. paaprophilus • ROSETTE arrangement/ Stick like • Fastidious organis, Capnophilic • Normal Flora of oropharynx
• Foam loving in yeast extracting w/ Pitting and requires Hemin • Affects Pediatric Population
• Dental plaques, bone and joint • Infects Aortic Valve • Assacharolytic w/ yellow pigment
infections • Causes SBE w/ very large and sheres to tubes on broth w/ • Kingella kingae: Osteoarthritis <4
vegetation and no Fever granules years old
A. actinomycetamcomitans • PITS AND CORRODES the agar • K. denitrificans: SBE
• On plated media appears as STAR- after incubation
SHAPED colonies • w/ BLEACH-LIKE ODOR
• Usually isolated together w/ A. • Causes the so called: HUMAN
israelli BITE WOUND/ CLEANCHED
• Cause Subacute Bacterial FIST WOUND: results from
Endocarditis (SBE) & Periodontitis trauma or fights
L. pneumophila • 15 serotypes
• Serotype 1: Legionnaire’s
dse/Broad Street
pneumonia/PONTIAC FEVER
• Serotype 6: pneumoniae
L. micdadei Pitsburgh pneumonia
A. HELICOBACTER PYLORI
• Formerly Campylobacter coli Spxmn: tse biopsy/autopsy
• Habitat: Human gastric Media:
mucosa/pyloric end of stomach • CAMPY-BAP (BAP w/ Vancomycin,
• w/ 4-6 polar flagella trimetrophim, Polymixin B)
• VF: very strong Urease activity • Brucella agar w/ 5% sheep blood
(MAKES ph alkaline) (PPM-BBbH) • CAP
• Causes: • Modified Thayer Martin Media
• TYPE B GASTRITIS • Stuart Media: Transport media
• PEPTIC ULCER/ GASTRIC (stool)
ULCER/DOUDENAL ULCER
• GASTRIC CARCINOMA
DIAGNOSIS FOR H. PYLORI INFECTION
TESTS ECCUT
CAMPLYLOBACTER JEJUNI
• Associated w/ gastritis and diarrhea
• MOT: handling infected pets and STD (Ssexually transmitted disease)
• GUILLAIN-BARRE SYNDROME
• Autoimmune acute paralysis w/ gastritis and diarrhea
• Stools w/ segmented Neutrophils and RBCs
• Initial signs: CRAMPS AND BLOODY DIARRHEA
Campylobacter jejuni Helicobacter pylori
• Grows at 4c • Grows at 4c
• Cat and Oxidase + • Cat and Oxidase +
• Nitrate + • Nitrate VARIABLE
• Cephalotin 30 ug Resistant • Cephalotin 30 ug SENSITIVE
• Nalidixic acid Sensitive • Nalidixic acid RESISTANT
• HYPPURATE HYDROLYSIS + • UREASE +
• Assacharolytic • Assacharolytic
NON FERMENTERS
• OBLIGATE AEROBES • Motile (polar Flagella & petrichous(alcaligens)
• NOT A NORMAL FLORA Except B. mallei , Acinetobacter,
• Ubiquitous found in MOIST ENVIRONMENT Flavobacterium
SUCH AS IN HOSPITAL • Oxidase +/ Oxidizers except Alcaligens O-
• Causes NOSOCOMIAL INFECTION (variable)/F-
• Non CHO fermenters/assacharolytic
• TSI: K/K
A. PSEUDOMONACEAE
RNA group 1 RNA group 2 RNA group 4
• P. pseudomallei • P. diminuta
Flourescent Stutzeri group Alcaligens
• P. cepacia • P. vesicularis
Group
• P. gladioli • P. paucimobili
• P. aeruginosa • P. stutzeri • P. alacaligens • S. putrefaciens
• P. • P. mendocina • Pseudoalcali
fluorescence • CDC group gens
• P. putidia VB3 • Pseudomona
s species
group 1
1. P. AERUGINOSA
• Most frequently isolated non-fermenter (in ICU) • Causes Mild Otitis externa : Swimmer’s ear,
• TSI: K/K Jacuzzi/Hot Tub syndrome, Erythema
• Grows well at 37C-42C gangrenosum/blue skin lesions, Keratitis
• Oxidase + and Beta hemolytic in BAP • May cause severe wound infections in BURN Px, UTI,
• MHA: GREEN METALLIC SHEEN pneumonia and sepsis
• Colony Odor: OVERRIPE GRAPE/ CORN • CITRATE AND ACETAMIDE UTILIZATION
TORTILLIA LIKE ODOR: due to release of 2- TEST+:
aminoacetaphenune • pH indicator (bromothymol blue)
• Virulence Factors: • +: blue -: green
• Exotoxin A : blocks protein synthesis • Grows on CETRIMIDE AGAR
• ALGINATE CAPSULE :prevents phagocytosis
• Produces pigments: Pyocyanin (Blue), Pyoverdin
(green), Pyorubin (red), Pyomelanin (black)
P. flourescence and P. putida P. stutzeri and P. mendocina
Motile Oxidase + Soil Denitrifiers
Pyocyanin negative and Pyoverdin positive Able to release and reduce nitrogen in soil and return it to
atmosphers
B. gladiola
• Plant pathogen
• Human: same w/ Cystic Fibrosis and Chronic Granulomatous disease in px w/ Lung transplant
C. STENOTROPHOMONAS
• May cause nosocomial infection like pneumonia and UTI
• Large colonies w/ yellow pigmentation in TSA, Lavander green pigment and Blue in Mac Conkey
Note: Grows on Modified Thayer Martin Media PPM-BBbH: Rapid urease producers
• Brucella, H. pylori, Kingella, P. immobilis Proteus, Providencia, Morganella, Brucella, Bordetella
brochoseptia, H. pylori
•
FAMILY VIBRIONACEAE
Normally found on Sea water (MOT: eating seafoods) • Media:
• Gram Negative Curved, Comma, Straight bacilli • TCBS (Thiosulfate Cirate Bile salt Sucrose agar) (selective
• Facultative anaerobes & differential) :
• Motile (monotrichous) w/ ‘’Shooting star motility • CHO: Sucrose
• Halophilic except V. cholorae and V. mimicus (0-3% NaCl) • pH indicator: Bromothymol zblue
• Positive string test ( 0.5 Na deoxycholate): Vibrio spp • + (yellow): V. cholorae and V. alginolyticus
• -Green : V. parahemolyticus, V. vulnificus, V. mimicus
• Spxmn: Stool/ Rectal swab • APW (Alkaline Peptone Water) : enrichment broth (1%
• Cary Blaire: transport media NaCl pH. 8.5)
• Avoid Buffered Glycerol Saline as transport media : toxic • SBA/ CAP w/ 0.5 % NaCl: ‘’Indescent w/ Greenish Hue’’
to Vibrio and C. diptheriae • MAC Conkey agar: NLF except V. vulnificus
3 GENERA
• VIBRIO SPECIES
• AEROMONAS
• PLESIOMONAS (NOW AN
ENTEROBACTERIACEAE)
VIRULENCE PRESUMPTIVE
FACTORS IDENTIFICATION
1.O AND H -on cell wall and Tests Use to differentiate
ANTIGENS Flagella respectively 1. APW, TCBS +, To differentiate Vibrio
2. Choleranogen/ Heat Labile Stringtest, Vibriostatic from Plesiomonas, and
Cholera toxin Agent (0/129 (150 ug) Aeromonas
3. Heat Stable Lysin -Lyse RBC 2. Cat +, Ox +, Nitrate + Vs Enterobacteriaceae
–V. parahaemolyticus (ex. V. metchinicovii) (Cat+, OX -, Nitrate +)
-Kanagawa 3. Inositol fermentation Plesiomonas +
Phenomenon LOA decarboxylation
4. CHO fermentation • All glucose fermenters
• Lactose: V. vulnificus
• Sucrose: CLassic, Eltor,
V. alginolyticus
• Inositol: Plesiomonas
VIBRIO SPP
FLOW CHART ID
VIBRIO CHOLORAE
• Non Halophilic (w/ V. mimicu) Causes CHOLERA
• String test + (Na Deoxycholate) • Diarrhea w/ RICE WATERY STOOL
• +cholera red test (Non specific) (Epithelial Cells and Vibrio)
• APW w/ Tryptophan and Nitrate + • Choleragen causes
organism > incubate + sulfuric acid • Massive Fluid Loss
• +: red due to Nitrosoindole • Dehydration
• Loss of Electrolytes (Na)
V. CHOLORAE SEROT YPES/
BIOT YPES
V. Cholorae 01 & 0139 V. Vholorae atypical/ V. Cholorae Non 01 Classical El tor
Non toxigenic 01
Hemolysis of - +
• Causes classical • Biochemically similar • Causes Non-epidemic
epidemic cholera w/ 01 but choleragen diarrhea
sheep RBC
• 0139 (pandemic VP test - +
strain): cross ract w/
Aeromonas antigens Chicken RBC - +
• 2 biotypes: Classic agglutination
and Eltor
Polymyxin S R
Susceptibility and
Vibriostatic Agent
Species Infos
A. caviae (most Pediatric diarrhea
common)
A. Veronii biovar sabria Leech Therapy cases
A. Hydrophila Water loving bacteria (aquatic environment)
Cuses GIT disease and Cutaeneous infection
PLESIOMONAS
• Salt water environment
P. Shegilloides (most common isolate)
• Resides on warm and cold blooded animals • May cause gastritis
• Contains O and H antigen (may cross react with • Now belongs in Enterobacteriaceae but are OX +
shigella ) • ONLY BACTERIA POSITIVE IN THREE
Decarboxylation) Lysine, Ornithine, Arginine
decarboxylase
Vibrio spp Aeromonas Plesiomonas
• Gram neg curved, comma, straight Gram Neg straight Gram neg straight singly/pairs/ chains/
• TCBS AND STRING TEST + Non halophilic filamentous
• Vibro 0129 (150ug) Sensitive Halophilic
• O % NaCL: V. cholorae and mimicus
• 6.5% NaCl >: other vibrio
STAGES
• Non culturable in vitro but can be maintain alive in Testicular chancre of
rabbits
PRIMARY SYPHILIS 2NDARY SYPHILIS Latent syphilis Tertiray Syphilis CONGENITAL
(6 WEEKS) (6 WEEKS) (6 years)
• HARD CHANCRE/ • ’’CONDYLOMATA LATA • Absent symptoms but • ‘’GUMMAS’’ • Structural defects but not
HUNTERIAN CHANCRE • Lesions outside Genitals SEROLOGICALLY + • Lesions on deep organs of intellectual; defects
• Genital lesions • Rash on Palms and soles bodies
• NO systemic signs and • Granulomatous lesions
symptoms • NEUROSYPHULIS
• Dx: motile treponemes • AORTITIS
3 SUBSPECIES OF T. PALIIDUM THAT CAUSES NON-VENEREAL
DISEASE (NON STD ONLY CONTACT WITH LESIONS)
Subspecies Disease infos
T. Pallidum subs. pertenue YAWS/ FRAMBESIA • Affects Skin and Bone
• Same with syphilis but with elevated lesions and granulomatous
nodules
T. Pallidum subs. carateum PINTA • Painless (papules) lesion
• Erythematous rash that hyperpigment in time
• Found in tropical regions
T. Pallidum subs. Endemicum BEJEL/ • Resembles yaws with primary and secondary papules
ENDEMICUM • MOT: contam Utensils
syphilis • Hot areas of the world
Others:
• T. cuniculi: venereal spirochetosis
• T. vincentil: Trech Mouth/ Vincent stomatitis
LEPTOSPIRA
I. LEPTOSPIRA INTERROGANS
• Pathogenic Diagnosis:
• VF: Surface Antigens, Soluble Hemolysin, Endotoxin
• Incubation: 10-12 days • 1st week: Blood and CSF (Inc IgM)
• MOT: Direct Contact w/ animal urine • Afetr 1 weeks: urine (Inc IgG)
• Causes ‘’HUMAN AND ANIMAL LEPTOSPIROSIS
• Influenza like signs • Rapid test: Macroscopic Slide Agglutination
2 phase • Gold Standard: MICROSCOPIC
1. Anicteric: septicemia, High Fever and Headache
2. Ecteric: Kidney, Liver cells (WEIL’S DISEASE): Severe form of the
AGGLUTINATION
dse
3. Note: aseptic meningitis: HALL MARK OF IMMUNE RESPONSE
• CHLAMYDIA SPECIES
• MYCOPLASMA SPECIES
• RICKETSIALES
CLAMYDIACEAE
Gram negative (if peformed) • CANT BE CULTURED IN PLATED MEDIA but can be
Has both DNA and RNA maintained on Viral culture medis (CELLS)
Obligate intrecelullar parasites • Cytological examination: For inclusion bodies
Primay host cell (NONCILATED COLUMNAR OR determination
TRANSITIONAL EPITHELIAL CELLS) • Papanicolaou stains (for endocervical specimens)
Has peptidoglycan on cell wall • Iodine stains: Half Moon shaped
Sensitive to antimicrobial agent
Sensitive to interferon
Mutilphy by binary fission
TESTS INFOS
CELL CULTURE Was considered Gold standard
PCR (Polymerase Chain Reaction) New Gold standard
NAATS Preferred diagnostic method (but not for conjunctival, oropharynx, and
Rectal specimens)
EIA (Enzyme Immunoassays) Most common rapid Antigen detection assay
MICROIMMUNOFLUORESECEN Method of choice for detecting antoibody
CE ASSAY
C. pneumoniae C. psitacci
• TWAR STRAIN (Taiwan Acute Respiratory Strain) • ORNITHOSIS OR PARROT FEVER
• Human is only known hots • MOT: dropping inhalation aerosol
• Grows poorly in cell cultures
• Factor for ASTHMA, Cardiovascualr dse, Guillain-Barre Syndrome (3 rd most common
cause of infectious respiratory disease)
• Lab diagnosis: MIF assay (method of choice) • Lab diagnosis: is dangerous and not recommended
• IgM titer (>1:32) and IgG titer (>1:512) : current penumoniae infections • Ruling out: Immunoassay and PCR
• IgG titer: >1;16 but < 1:512 : past infections
OTHER
GENUS
COXIELLA Not transmitted by arthrobpods
Grows in PHAGOLYSOSOMES
Spore formers and can live in acidic environment
BARTONELLA Infects RBC’S
ORDER RICKETSIALES
NON MOTILE w/ Both DNA and RNA 2 ways on how they persist in nature by arthropod Hosts:
Obligate intracellular pathogens • By Transvarial Transmission
Arthropod Bourne except Coxiella • Rickettsia is passed thru generation of arthropods
MANIFESTED SYMPTOMS: (can be both vectors and reservoir)
FEVER AND HEADACHE • Arthropods directly inoculate new Hosts w/ ricketssia
RASHES except Q fever and Erhlich disease during feeding
Giemsa stain: Blue • Arthropod vector die of rickettsial infection and
Machiavello stain: Red animals/human act as natural reservoir except
Gimenez stain: Reddish Black Ricketssia prowazekii
Notes:
Isolation of ricketssia is not recommended because of • Serologic Assay: Only Lab tests performed for diagnosis
their infectious nature but only for convalescent specimens
Require BSC III • Immunoflourescence Antibody tests (IFA): Gold
Immunohistochemical Detection: established Method standard for Antibody Detection
for detection • WEIL-FELIX tests: uses Antigens from Proteus species
because it cross react w/ ricketsial antigen
• X19 and OX2 strains of Proteus vulgaris
• OXK strains of Proteus mirabilis.
A. SPOTTED FEVER GROUP
• Replicates in cytoplasm and nucleus epithelial cells
• Tick Bourne except R. akari (CAT FLEA)
SPECIES DSE MOT/ VECTOR
R. rickettsiae Rocky Mountain Spotted Ticks (Permacenter
Fever (Most severe) varibalis)
R. conorii Boutounneuse fever/ Ticks
Meditteranean spotted
feve/ Indian Tick typhus/
Kenya Tick fever/ South
African Fever
R. sibirica North Asian Tick typhus Ticks
fever
R. Akari Rickettsial Pox Mitebite/ Chigger from
House mouse
TRANSITIONAL GROUP
Species Disease MOT/ Vector
Cat Flea Rickettsia / R. feleus Murine Typhus like illness Flea bites/ Feces
R. australis Quuensland Tick typhus fever/ Tick bite
Australian
Rickettsia japonica Oriental spotted fever Tick bites
COXIELLOSIS
SPECIES DISEASE MOT/ VECTOR
Coxiella burnetti Q (Query) Fever Inhalation of aerosols from infected animals,
possibly ingestion of animal products
Inhalation of birthing fluids
Ingestion of unpasteurized Milk