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Epigenetics in
Cardiovascular Disease
Translational Epigenetics Series
Trygve Tollefsbol - Series Editor
Cancer and Noncoding RNAs Environmental Epigenetics in Toxicology and Public Health
Edited by Jayprokas Chakrabarti and Sanga Mitra, 2017 Edited by Rebecca Fry, 2020
Nuclear Architecture and Dynamics Developmental Human Behavioral Epigenetics
Edited by Christophe Lavelle and Jean-Marc Victor, 2017 Edited by Livio Provenzi and Rosario Montirosso, 2020
Epigenetic Mechanisms in Cancer
Edited by Sabita Saldanha, 2017
Translational Epigenetics
Epigenetics in
Cardiovascular Disease
Volume 24
Series Editor
Trygve Tollefsbol
Comprehensive Cancer Center, Comprehensive Center for Healthy Aging,
University of Alabama at Birmingham, Birmingham, AL, United States
Edited by
Yvan Devaux
Head, Cardiovascular Research Unit, Luxembourg Institute of Health, Strassen, Luxembourg
Notices
Knowledge and best practice in this field are constantly changing. As new research and experience broaden our
understanding, changes in research methods, professional practices, or medical treatment may become
necessary.
Practitioners and researchers must always rely on their own experience and knowledge in evaluating and using
any information, methods, compounds, or experiments described herein. In using such information or methods
they should be mindful of their own safety and the safety of others, including parties for whom they have a
professional responsibility.
To the fullest extent of the law, neither the Publisher nor the authors, contributors, or editors, assume any liability
for any injury and/or damage to persons or property as a matter of products liability, negligence or otherwise, or
from any use or operation of any methods, products, instructions, or ideas contained in the material herein.
Library of Congress Cataloging-in-Publication Data
A catalog record for this book is available from the Library of Congress
British Library Cataloguing-in-Publication Data
A catalogue record for this book is available from the British Library
ISBN: 978-0-12-822258-4
xvii
xviii Contributors
Kyriacos Felekkis
Department of Life and Health Sciences, School of Sciences and Engineering, University of Nicosia,
Nicosia, Cyprus
P
eter Ferdinandy
Cardiometabolic and MTA-SE System Pharmacology Research Group, Department of
Pharmacology and Pharmacotherapy, Semmelweis University, Budapest; Pharmahungary Group,
Szeged, Hungary
Roger S-Y Foo
Genome Institute of Singapore; Cardiovascular Disease Translational Research Programme,
National University Health System, National University of Singapore Yong Loo Lin School of
Medicine, Singapore, Singapore
Eleftheria Galatou
Department of Life and Health Sciences, School of Sciences and Engineering, University of Nicosia,
Nicosia, Cyprus
David de Gonzalo-Calvo
Translational Research in Respiratory Medicine, University Hospital Arnau de Vilanova and Santa
Maria, IRB Lleida, Lleida; CIBER of Respiratory Diseases (CIBERES), Institute of Health Carlos III,
Madrid, Spain
Simona Greco
Molecular Cardiology Laboratory, IRCCS Policlinico San Donato, Milan, Italy
Johannes Grillari
TAmiRNA GmbH; Austrian Cluster for Tissue Regeneration, Medical University of Vienna; Ludwig
Boltzmann Institute for Experimental and Clinical Traumatology, Vienna, Austria
Hakan Gunes
Faculty of Medicine, Department of Cardiology, Kahramanmaras Sutcu Imam University,
Kahramanmaras, Turkey
Matthias Hackl
TAmiRNA GmbH; Austrian Cluster for Tissue Regeneration, Medical University of Vienna, Vienna,
Austria
Nazha Hamdani
Department of Molecular and Experimental Cardiology; Department of Cardiology, St. Josef-
Hospital and Bergmannsheil; Department of Clinical Pharmacology; Institute of Physiology, Ruhr
University Bochum, Bochum, Germany
Lutz Hein
Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine; BIOSS
Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany
Carlos Hermenegildo
Department of Physiology, Faculty of Medicine and Dentistry, University of Valencia, and INCLIVA
Biomedical Research Institute, Valencia, Spain
Eduardo Iglesias-Gutierrez
Department of Functional Biology, Physiology, University of Oviedo; Health Research Institute of
the Principality of Asturias (ISPA), Oviedo, Spain
Contributors xix
Benedetta Izzi
Department of Epidemiology and Prevention, IRCCS NEUROMED, Pozzilli, IS, Italy
Kornelia Jaquet
Department of Molecular and Experimental Cardiology; Department of Cardiology, St. Josef-
Hospital and Bergmannsheil; Department of Clinical Pharmacology, Ruhr University Bochum,
Bochum, Germany
Amela Jusic
Department of Biology, Faculty of Natural Sciences and Mathematics, University of Tuzla, Tuzla,
Bosnia and Herzegovina; Cardiovascular Research Unit, Luxembourg Institute of Health,
Luxembourg, Luxembourg
Kanita Karad-uzovi
c-Hadžiabdi
c
Department of Engineering, International University of Sarajevo, Sarajevo, Bosnia and Herzegovina
Gabriela M. Kuster
Department of Biomedicine, University Hospital Basel and University of Basel; Department of
Cardiology, University Hospital Basel, Basel, Switzerland
Alisia Madè
Molecular Cardiology Laboratory, IRCCS Policlinico San Donato, Milan, Italy
Federica De Majo
Department of Molecular Genetics, Faculty of Science and Engineering; CARIM School for
Cardiovascular Diseases, Faculty of Health, Medicine and Life Sciences; Maastricht University,
Maastricht, The Netherlands
Fabio Martelli
Molecular Cardiology Laboratory, IRCCS Policlinico San Donato, Milan, Italy
Andreas M€ugge
Department of Molecular and Experimental Cardiology; Department of Cardiology, St. Josef-
Hospital and Bergmannsheil, Ruhr University Bochum, Bochum, Germany
Vivien Ngo
Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University
of Freiburg, Freiburg, Germany
Susana Novella
Department of Physiology, Faculty of Medicine and Dentistry, University of Valencia, and INCLIVA
Biomedical Research Institute, Valencia, Spain
Ana Bel
en Paes
Department of Physiology, Faculty of Medicine and Dentistry, University of Valencia, and INCLIVA
Biomedical Research Institute, Valencia, Spain
Christos Papaneophytou
Department of Life and Health Sciences, School of Sciences and Engineering, University of Nicosia,
Nicosia, Cyprus
Thierry Pedrazzini
Experimental Cardiology Unit, Division of Cardiology, Department of Cardiovascular Medicine,
University of Lausanne Medical School, Lausanne, Switzerland
xx Contributors
Antje Peters
€nster, Mu
Department of Genetic Epidemiology, Institute of Human Genetics, University of Mu €nster,
Germany
Lucı́a Pinilla
Translational Research in Respiratory Medicine, University Hospital Arnau de Vilanova and Santa
Maria, IRB Lleida, Lleida; CIBER of Respiratory Diseases (CIBERES), Institute of Health Carlos III,
Madrid, Spain
Emma Louise Robinson
School of Medicine, Division of Cardiology, University of Colorado Denver, Anschutz Medical
Campus, Aurora, CO, United States
Elisabeth Semmelrock
TAmiRNA GmbH, Vienna, Austria
Justus Stenzig
Department of Experimental Pharmacology and Toxicology, University Medical Centre Hamburg-
Eppendorf, Hamburg, Germany
Maarten Vanhaverbeke
Cardiovascular Medicine, University Hospitals Leuven, Leuven, Belgium
Mirko V€
olkers
German Center for Cardiovascular Research (DZHK)—Partner site Heidelberg/Mannheim;
Department of Internal Medicine III, University Hospital Heidelberg, Heidelberg, Germany
Leon J. De Windt
Department of Molecular Genetics, Faculty of Science and Engineering; CARIM School for
Cardiovascular Diseases, Faculty of Health, Medicine and Life Sciences; Maastricht University,
Maastricht, The Netherlands
Johannes Winkler
Department of Cardiology, Medical University of Vienna, Vienna, Austria
Angela Xuereb Anastasi
Department of Applied Biomedical Science, Faculty of Health Sciences, University of Malta, Msida,
MSD2080, Malta
Mehmet Birhan Yilmaz
Faculty of Medicine, Department of Cardiology, Dokuz Eylul University, Izmir, Turkey
Preface
xxi
xxii Preface
FIG. 1
An illustration of the central dogma of molecular biology, the flow of biochemical information from DNA to RNA
and protein.
Adapted from Genome Research Limited.
Preface xxiii
chemical modification either to the DNA or RNA bases themselves or to the proteins (histones) that
package DNA into chromatin.
Epigenetic mechanisms include:
These epigenetic modifications act in concert with each other to determine the protein and RNA pro-
files at any given point in time.3
Epigenetic mechanisms
Epigenetic mechanisms regulate differentiation, development, homeostasis, aging, and disease. Epige-
netic marks are laid down in differentiation and development to program the transcriptome from plur-
ipotency to determine cell fate and define the differentiated cell state. Both in a replication-dependent
as well as replication-independent manner, the epigenetic landscape is not static (unlike the genome)
but is dynamic throughout replicative and chronological aging. Importantly, the epigenome is respon-
sive to environmental cues such as redox and metabolic or neurohumoral signaling. Wholesale remo-
deling of DNA methylation, histone modification, noncoding RNA, and RNA modification profiles has
been described in the heart and vasculature in CVD.4–7
Epigenetic marks (DNA, RNA, and chromatin modifications) are mediated by epigenetic modi-
fiers. Epigenetic modifiers can be further described according to their function—epigenetic writers,
erasers, and readers. These are also dynamically regulated in disease processes. The addition or re-
moval of epigenetic marks, accompanied by binding of epigenetic readers and ncRNAs, in turn reg-
ulates gene expression. It does so by altering the chromatin structure at a particular location in the
genome; affecting the accessibility of enhancers, promoters, and gene bodies to transcription factors
and RNA polymerases; as well as creating platforms for long-distance regulatory genomic interactions.
In the case of the epitranscriptome, RNA stability, localization, and function can be modulated.
This book addresses the current knowledge and understanding of how epigenetic modifications and
modifiers regulate gene expression and different biological processes in the initiation and progression
of CVD in the heart and vasculature. It also evaluates the use of epigenetic marks in diagnostic and
epigenetic modifiers emerging as therapeutic targets.
Acknowledgments
This article is based upon the work from EU-CardioRNA COST Action CA17129 (www.cardiorna.eu)
supported by COST (European Cooperation in Science and Technology). ELR is supported by a Dutch
Heart Foundation (Hartstichting) CVON EARLY-HFPEF-2015 consortium grant (Dutch Heart Foun-
dation) and a CVON RECONNECT Young Talent Programme award. YD is funded by the National
Research Fund (grants # C14/BM/8225223 and C17/BM/11613033), the Ministry of Higher Education
and Research, and the Fondation Coeur—Daniel Wagner of Luxembourg.
References
1. http://origin.who.int/cardiovascular_diseases/en/.
2. Azodi M, et al. The missing “lnc” between genetics and cardiac disease. Noncoding RNA. 2020;6(1).
3. Unfinished symphony j Nature [Internet]. [cited 2020 March 2019]. Available from: https://www-nature-com.
kuleuven.ezproxy.kuleuven.be/articles/441143a.
4. Berulava T, et al. Changes in m6A RNA methylation contribute to heart failure progression by modulating
translation. Eur J Heart Fail. 2020;22(1):54–66.
xxvi Preface
5. Gilsbach R, et al. Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and dis-
ease. Nat Commun. 2014;5:5288.
6. Hermans-Beijnsberger S, van Bilsen M, Schroen B. Long non-coding RNAs in the failing heart and vascu-
lature. Noncoding RNA Res. 2018;3(3):118–130.
7. Kaneda R, et al. Genome-wide histone methylation profile for heart failure. Genes Cells. 2009;14(1):69–77.
8. Goretti E, Wagner DR, Devaux Y. miRNAs as biomarkers of myocardial infarction: a step forward towards
personalized medicine? Trends Mol Med. 2014;20(12):716–725.
9. Huang C-K, Kafert-Kasting S, Thum T. Preclinical and clinical development of noncoding RNA therapeutics
for cardiovascular disease. Circul Res. 2020;126(5):663–678.
10. Gomes CPC, et al. Regulatory RNAs in heart failure. Circulation. 2020;141(4):313–328.
11. Gomes CP, et al. Catalyzing transcriptomics research in cardiovascular disease: the CardioRNA COST Action
CA17129. Noncoding RNA. 2019;5.
CHAPTER
1.1 Introduction
Cardiovascular diseases, which comprise ischemic cardiac disease, stroke, heart failure, peripheral
artery disease, and other vascular diseases, are a leading cause of mortality and morbidity in the world
and contribute significantly to impaired quality of life. In 2017, CVD resulted in 17.8 million death and
35.6 million-year disability worldwide. Awareness of prevalence and incidence of CVD and risk
factors can provide us with the opportunity for prevention and management of the disease and can lead
to improved survival.1
by the data derived from Eurostat and the Organization for Economic Cooperation and Development
(OECD), was shown to yield more than 10% of total health expenditures in 2016.2 Of note, majority
was shown to be related to hospitalizations and pharmacological therapy. In Health Expenditures by
Diseases and Conditions (HEDIC) Project, which includes several European countries in 2013, CVD
was shown to cover the highest ratio of all health expenditures, yielding almost 16% of all expen-
ditures by verifying OECD measures. The ratio of health expenditures reserved for CVD was notified
to be an important part of total expenditures although there is a decreasing trend in recent years.
When it comes to the economic burden of CVD, it was calculated to be 169 billion Euros accounting
for 62% of all health expenditures.2 In 2015, this was calculated to rise to 210 billion Euros, and of
this cost, 53% went to health costs, 26% went to productivity losses, and 21% went to off-the-record
care.2 Among healthcare costs, in-hospital care of CVD patients accounts for 51% and the medica-
tion costs account for 21%. On the contrary, the total cost of ischemic heart disease was calculated to
be approximately 59 billion Euros and this was followed up by cerebrovascular disease-related costs
of 45 billion Euros.2 In the ENH study, per capita cost for CVD was considered thoroughly and it was
shown that it was 48,000 Euro in Bulgaria and 365,000 Euro in Finland.2 In the light of these findings,
it could be stated that CVD accounts for a significant portion of healthcare expenditures of ESC
countries with regard to financial situation and economic power. Cardiovascular disease accounts
for a significant part of healthcare expenditures in the USA, quite similar to that in ESC countries.
In 2015, 102.7 million people (41.5% of the whole population) were noted to suffer from CVD and
this number is expected to rise to 131.2 million people by the year 2035. With half of its population
suffering from CVD, the USA was calculated to spend 318 billion US Dollars in 2015, and this is
expected to rise to 749 billion US Dollars by the year 2035. Cardiovascular disease has important
consequences all over the world considering individuals, healthcare systems, and population level.
World Heart Federation estimated that the 963 billion US Dollars of the total global financial burden
of CVD to rise 1044 billion US Dollars by 2030.2 Hence, it is an important subsistence as it gives
shape to epidemiological and economic future.
FIG. 1.1
Population attributable risk for CVD.
that the prevalence of hypertension decreased from 1980 to 2015 in all ESC countries (35.3% versus
24.2%) although it was much more striking in high-income countries.2 As an important contributor of
CVD-related morbidity and mortality, hypertension has not only been better recognized and managed
in high-income countries, but also achieved considerable progress in low-to-middle-income countries.7
In light of these findings, WHO announced its wish to decrease the prevalence of hypertension by 25%
by the year 2025.2 Management of hypertension has a critical role in the primary and secondary
prevention of CVD. This is particularly valid for patients with diabetes mellitus, renal failure, and
vascular disease by achieving strict control of blood pressure. Of note, this achievement can yield a
significant decrease in the prevalence of CVD.
1.3.1.2 Cholesterol
Cholesterol, particularly LDL cholesterol, is a significant predictor of CVD, and increased serum con-
centration of LDL cholesterol is linearly related to increased risk for CVD.8 Among people without a
history of CVD, i.e., in primary prevention, statin-related 1 mmol/L decrease in LDL cholesterol can
decrease CVD risk by 15%.9 Just like hypertension, the prevalence of high cholesterol (i.e., hypercho-
lesterolemia) also differs by gender or income levels of countries. High total cholesterol is reported in
more than 50% of high-income European countries, whereas it is less than 30% in Asian or African
countries. In 2008, MAS hypercholesterolemia prevalence was 15.6% in women versus 14.3% in
men in the ESC countries. The prevalence of hypercholesterolemia in women from high-income coun-
tries raised to 18.8% (IQR 16.5%–20.8%), compared to 11.8% (IQR 9.6%–13%) prevalence of women
from low-income countries. Besides, the prevalence was 18.1% among men from high-income coun-
tries, and among men from low-income countries, hypercholesterolemia prevalence was just 8.7%.2 Of
note, similar decreasing trends in the prevalence of hypercholesterolemia was observed in both high-
income and low-income countries. Effective management of hyperlipidemia, not surprisingly, can
decrease not only the prevalence but also the incidence of CVD.
1.3.1.4 Obesity
Obesity, in the general population, is calculated as the body mass index (BMI), in which an individual’s
weight in kilograms is divided by the square of height in meters. Obesity is present when body mass
index is more than 30 kg/m2, reported by WHO along with increasing BMI categories increasing the
severity of obesity. Of note, a person with a BMI more than and equal to 25 kg/m2 is considered over-
weight. The prevalence of obesity is rising not only in developed but also in developing countries.
Liberalism in global trading, rapid urbanization, sedentary lifestyle changes, and increased consump-
tion of animal-derived oils and sugar has brought about obesity as the epidemic of the new century.13 In
the world, the number of obese people exceeded the number of lean people. In ESC countries, every one
in five individuals is obese. In the ESC countries, MAS BMI is reported to be 26.6 kg/m2 (IQR
26.1–27.1) with similar numbers in both genders. Global BMI Mortality Collaboration reported in
2016 that every 5 kg/m2 increase in BMI among people with BMI 25.0 kg/m2 increased the risk of
death by 1.39-folds.14 Although the prevalence of obesity in high-income countries is higher than that
in low-income countries, both groups yielded a significant increase in the prevalence of obesity. In
1980, obesity prevalence was 9.6% (IQR 8.2%–11.9%), and this number in 2016 has raised to
22.6% (IQR 20.9%–25.8%).2 An increase in the prevalence of obesity along with DM significantly
contributes to an uncontrollable increase in CVD.
1.3.2.2 Alcohol
Alcohol consumption is defined as the per capita consumption of pure alcohol in liters per year and is a
European Core Health Indicator and target of WHO.16 Excessive alcohol consumption is responsible
for one in every ten deaths among adults and, hence, is an important reason of premature death in the
USA. In the EU countries, excessive alcohol consumption is also an important contributor to premature
death after smoking and alcohol-abuse-related hypertension is responsible for 60% of all alcohol-
related deaths. In 2016, 66.6% of adults in the ESC countries reported to consume alcohol in the last
year with a median alcohol consumption of 10.2 L/capita/year.2 Of note, significant differences exist in
different countries with the highest consumption in Portugal, Belgium, Bulgaria, France, Germany,
Latvia, Republic of Moldova, Romania, and Slovenia, and the lowest consumption in Algeria,
Azerbaijan, Egypt, Israel, Lebanon, Libya, Morocco, Syria, Tunisia, and Turkey. Of note, there is
no level at which chronic alcohol consumption can be beneficial, according to GBD 2016 Alcohol
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that five thousand, belongs to me by rights. Oh, never mind, I’m
going along. Do you hear?” he shouted, his fists raised, “I’m going
along, I tell you. There ain’t a man of you big enough to stop me.
Let’s see you try and stop me going. Let’s see you once, any two of
you.” He filled the barroom with his clamor.
“Lord love you, come along, then,” said the sheriff.
The posse rode out of Keeler that same night. The keeper of the
general merchandise store, from whom Marcus had borrowed a
second pony, had informed them that Cribbens and his partner,
whose description tallied exactly with that given in the notice of
reward, had outfitted at his place with a view to prospecting in the
Panamint hills. The posse trailed them at once to their first camp at
the head of the valley. It was an easy matter. It was only necessary
to inquire of the cowboys and range-riders of the valley if they had
seen and noted the passage of two men, one of whom carried a bird-
cage.
Beyond this first camp the trail was lost, and a week was wasted in
a bootless search around the mine at Gold Gulch, whither it seemed
probable the partners had gone. Then a traveling peddler, who
included Gold Gulch in his route, brought in the news of a wonderful
strike of gold-bearing quartz some ten miles to the south on the
western slope of the range. Two men from Keeler had made a strike,
the peddler had said, and added the curious detail that one of the
men had a canary bird in a cage with him.
The posse made Cribbens’ camp three days after the
unaccountable disappearance of his partner. Their man was gone,
but the narrow hoof-prints of a mule, mixed with those of huge hob-
nailed boots, could be plainly followed in the sand. Here they picked
up the trail and held to it steadily till the point was reached where,
instead of tending southward, it swerved abruptly to the east. The
men could hardly believe their eyes.
“It ain’t reason,” exclaimed the sheriff. “What in thunder is he up
to? This beats me! Cutting out into Death Valley at this time of year!”
“He’s heading for Gold Mountain over in the Armagosa, sure.”
The men decided that this conjecture was true. It was the only
inhabited locality in that direction. A discussion began as to the
further movements of the posse.
“I don’t figure on going into that alkali sink with no eight men and
horses,” declared the sheriff. “One man can’t carry enough water to
take him and his mount across, let alone eight. No, sir. Four couldn’t
do it. No, three couldn’t. We’ve got to make a circuit round the valley
and come up on the other side and head him off at Gold Mountain.
That’s what we got to do, and ride like blazes to do it, too.”
But Marcus protested with all the strength of his lungs against
abandoning the trail now that they had found it. He argued that they
were now but a day and a half behind their man. There was no
possibility of their missing the trail—as distinct in the white alkali as
in snow. They could make a dash into the valley, secure their man,
and return long before their water failed them. He, for one, would not
give up the pursuit, now that they were so close. In the haste of the
departure from Keeler the sheriff had neglected to swear him in. He
was under no orders. He would do as he pleased.
“Go on, then, you darn fool,” answered the sheriff. “We’ll cut on
round the valley, for all that. It’s a gamble he’ll be at Gold Mountain
before you’re half-way across. But if you catch him, here”—he
tossed Marcus a pair of handcuffs—“put ’em on him and bring him
back to Keeler.”
Two days after he had left the posse, and when he was already far
out in the desert, Marcus’s horse gave out. In the fury of his
impatience he had spurred mercilessly forward on the trail, and on
the morning of the third day found that his horse was unable to
move. The joints of his legs seemed locked rigidly. He would go his
own length, stumbling and interfering, then collapse helplessly upon
the ground with a pitiful groan. He was used up.
Marcus believed himself to be close upon McTeague now. The
ashes at his last camp had still been smoldering. Marcus took what
supplies of food and water he could carry, and hurried on. But
McTeague was farther ahead than he had guessed, and by evening
of his third day upon the desert Marcus, raging with thirst, had drunk
his last mouthful of water and had flung away the empty canteen.
“If he ain’t got water with um,” he said to himself, as he pushed on,
“if he ain’t got water with um, I’ll be in a bad way. I will, for a fact.”