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2
Origins of Organic
Chemistry
Foundations of organic chemistry from mid-
1700’s.
3
Because of “Vital force”, it was thought that
organic compounds could not be synthesized
in laboratory like inorganic compounds.
4
• Organic chemistry is study of carbon
compounds.
• Why is it so special?
- 90% of more than 30 million
chemical compounds contain carbon.
- Examination of carbon in periodic
chart answers some of these
questions.
- Carbon is group 4A element, it can
share 4 valence electrons and form 4
covalent bonds.
5
1.1 Atomic Structure
Structure of an atom
◦ Positively charged nucleus (very dense, protons and
neutrons) and small (10-15 m)
6
The Atomic Symbol
A = Atomic mass C = Charge
=# p +#n = + or - values
A C
Z X #
6
X - -
+
+
Z = Atomic number +
- +
+
+
= # protons = # electrons
-
The Atomic Symbol
A = Atomic mass
= # protons + # neutrons
- -
12
C
-
-
6 +
+
Z = Atomic number - +
+
+ +
= # protons = # electrons -
The Atomic Symbol
A = Atomic mass C = Charge = +1
11 12
= p + n = 23
23 1+
11
Na
Z = Atomic # = p = 11 # = 1 atom in formula.
Sodium
Why is the atomic weight on the tables not a whole #?
47 Atomic number
Silver Name of the element
Ag Elemental Symbol
A new layer is
added for each
row or period in
the table.
Electron arrangement
24 Electrons
12
Mg
fill layers
32 around nucleus
18 Low High
8
2
1 4
1
H He
2
7 9
3
Li 4
Be
2,
2, 11 2,
2, 22
IA IIA IIIA
1
1
H
11
7 9
Li Be 5
B
3 4
2,
2, 11 2,
2, 22 2, 3
IIIA IVA VA
11 12 13
5
B 6
C 7
N
2,
2, 33 2,
2, 44 2,
2, 55
IA IIA VIIIA
1 4
1
H He
2
7 9 20
Li 4
Be 10 Ne
3
2,
2, 11 2,
2, 22 2,
2, 88
24 40
23
12 Mg 18Ar
11 Na
2,
2, 8,
8, 88
2, 8, 1 2, 8, 2
11
1 Valence electrons
1
H Where most chemical
22 Reactions occur.
33
7 9 11
Li 4
Be B
3 5
2,
2, 11 2,
2, 22 2, 3
24 27
23
11 Na 12 Mg 13 Al
2,
2, 8,
8, 33
2, 8, 1 2, 8, 2
11
88
1 Octet Rule 4
1
H He
22 2
9 20
7 Be Ne
3
Li 4
10
2,
2, 11 2,
2, 22 2,
2, 88
24 40
23
12 Mg 18Ar
11 Na
2,
2, 8,
8, 88
2, 8, 1 2, 8, 2
The octet rule
Atoms are most stable if they have a
filled or empty outer layer of electrons.
26
Orbitals
Aplot of 2 describes where electron
most likely to be
Electroncloud has no specific boundary
so we show most probable area
s (1) p (3) d (5) f (7)
An f orbital
28
Orbitals and Shells
1st shell contains one s orbital, denoted 1s, holds
2 e-s
2nd shell contains one s orbital (2s) and three p
orbitals (2p), 8 electrons
3rd shell contains an s orbital (3s), three p orbitals
(3p), and five d orbitals (3d), 18 electrons
29
p-Orbitals
In
each shell there are three
perpendicular p orbitals, px, py, and pz, of
equal energy
30
1.3 Atomic Structure: Electron
Configurations
Ground-state electron configuration (lowest energy
arrangement) of an atom lists orbitals occupied by its
electrons. Rules:
31
1.3 Atomic Structure: Electron
The Aufbau (“build-up”) principle Configurations
Electrons fill from the
f
low high. d
fill n = 1 before n = 2 , p n=4
fill s before p ... s
d
Pauli Exclusion principle p n=3
s
Each subshell contains p
orbitals which can hold a n=2
s
max of 2 e-s s
n=1
e’s in same orbital must be
of opposite spins: 1 & 1 .
Hund’s Rule
Electrons don’t share same orbital unless they need to.
(i.e. no pairing until each orbital of the set has an e-)
5d
Major trends in electron filling
Exceptions: 4f
◦ Fill 4s before 3d 5p
◦ Fill 5s before 4 d 4d
◦ Fill 5p before 4f
5s
4p
This is why 3d
transition metals 4s
are assigned as 3p
B group elements.
3s
2p
2s
1s
Electron
5d __ __ __ __Configuration
__
6s __
4f __ __ __ __ __ __ __
5p __ __ __
7
4d __ __ __ __ __ Li
5s __ 3
4p __ __ __
4s __ 3d __ __ __ __ __
3px __ y__ z __ 1s22s1
3s __
2px __ y__ z __
2s __
1s __
Electron Configuration
5d __ __ __ __ __
6s __
4f __ __ __ __ __ __ __
5p __ __ __ 16
4d __ __ __ __ __8 O
5s __
4p __ __ __
4s __ 3d __ __ __ __ __
3p __ __ __ 1s22s22p4
3s __
2px __ y __z __
2s __
1s __
Electron Configuration
5d __ __ __ __ __
6s __
4f __ __ __ __ __ __ __
5p __ __ __
4d __ __ __ __ __ Zn
5s __ 30
4p __ __ __
4s __ 3d __ __ __ __ __
3px __ y __z __
3s __ 1s22s22p63s23p64s23d10
2px __ y__ z __
2s __ [Ar] 4s23d10
1s __ [Ar] 3d104s2
Classification by sublevels
ss
H pp He
Li Be B C N O F Ne
dd
Na Mg Al Si P S Cl Ar
K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr
Rb Sr Y Zr Nb Mo Tc Ru Rh Pd Ag Cd In Sn Sb Te I Xe
Cs Ba Ls Hf Ta W Re Os Ir Pt Au Hg Tl Pb Bi Po At Rn
Fr Ra Ac
Ce Pr Nd Pm Sm Eu Gd Tb Dy Ho Er Tm Yb Lu
ff
Th Pa U Np Pu Am Cm Bk Cf Es Fm Md No Lr
3 - 25
Using the periodic table
s to find sublevels
1 H He
p
2 Li Be 2 B C N O F Ne
3 Na Mg d 3 Al Si P S Cl Ar
4 K Ca 3 Sc Ti V Cr Mn Fe Co Ni Cu Zn 4 Ga Ge As Se Br Kr
5 Rb Sr 4 Y Zr Nb Mo Tc Ru Rh Pd Ag Cd 5 In Sn Sb Te I Xe
6 Cs Ba 5 Ls Hf Ta W Re Os Ir Pt Au Hg 6 Tl Pb Bi Po At Rn
7 Fr Ra 6 Ac
4 Ce Pr Nd Pm Sm Eu Gd Tb Dy Ho Er Tm Yb Lu
f 5 Th Pa U Np Pu Am Cm Bk Cf Es Fm Md No Lr
Learning Check:
Which of the following represents the ground-
state electronic configuration for carbon
(atomic number 6)?
1. 1s22s22px22py02pz0
2. 1s22s22px12py12pz0
3. 1s22s12px12py1
2pz1
4. 1s12s22px12py1
2pz1
5. 1s22s22px02py02pz2
39
Solution:
Which of the following represents the ground-
state electronic configuration for carbon
(atomic number 6)?
1. 1s22s22px22py02pz0
2. 1s22s22px12py12pz0
3. 1s22s12px12py1
2pz1
4. 1s12s22px12py1
2pz1
5. 1s22s22px02py02pz2
40
1 Octet Rule 4
1
H He
2
1s1 1s2
7 9 20
Li 4
Be 10
Ne
3
1s , 2s
2 1 1s2, 2s2 1s2, 2s2 2p6
24 40
23 Mg
12 18 Ar
11
Na
1s 2
, 2s 2
2p 6
, 3s 2
3p6
1s2, 2s2 2p6, 3s1
[Ne] 3s1 1s2, 2s2 2p6, 3s2
1 Lewis Structures
1
H
H Show only
7 Valence
3
Li
Electrons
Li
23 Na
11
Na
K
1 Nonmetals Share e-s 8
with other nonmetals
H 2 3 4 5 6 7 He
Li Be B C N O F Ne
Na Mg Al Si P S Cl Ar
Metals give e-s to nonmetals
K Ca Ga Ge As Se Br Kr
Common ions
Representative Elements
1+
1+ 4+
4+
4-
4-
H 2+ 3+ 3-
3- 2-
2- 1-
1- He
Li Be Transition Elements B C N O F Ne
Variable
Variable
Na Mg Al Si P S Cl Ar
K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr
Rb Sr Y Zr Nb Mo Tc Ru Rh Pd Ag Cd In Sn Sb Te I Xe
Cs Ba Ls Hf Ta W Re Os Ir Pt Au Hg Tl Pb Bi Po At Rn
Fr Ra Ac Ce Pr Nd Pm Sm Eu Gd Tb Dy Ho Er Tm Yb Lu
Th Pa U Np Pu Am Cm Bk Cf Es Fm Md No Lr
Formation of NaCl
e- moves from Metal Nonmetal
Stable octets
_
Na + Cl Na + Cl
+
Metal Nonmetal
Cation Anion
Li Be B C N O F Ne
Na Mg Al Si P S Cl Ar
Metals give e-s to nonmetals
K Ca Ga Ge As Se Br Kr
Covalent Bonds
H + H H H
Cl +
Cl Cl Cl
O + O O O
N + N N N
Covalent Bonds
H H H-H H2
Cl Cl Cl-Cl Cl2
O O O=O O2
N N N N N2
Covalent Bonds
Carbon monoxide CO
C O C O
Carbon dioxide CO2
O C O O=C=O
May modify rules to improve sound.
ie - monoxide
mon not monooxide.
mono
Review:
Naming covalent compounds
CO carbon monoxide
CO2 carbon dioxide
N2O5 dinitrogen pentoxide
SiO2 silicon dioxide
ICl3 iodine trichloride
P2O5 diphophorous pentoxide
CCl4 carbon tetrachloride
May modify rules to improve the sound.
Example - use monoxide not monooxide.
Shape
CO2
O C O
O=C=O
60
Shape
e-’s in 2 directions = 180o
O=C=O Linear
C
H H
Shape
e-’s in 4 directions = 109.5o
N
H N H H N H H
H H
H H
Pyramidal
(109.5o)
Tetrahedral Configuration of Electrons
Trigonal Pyramid Configuration of Atoms
Tetrahedral electron-pair
Geometries
Tetrahedral
Pyramidal
Bent
71
Non-bonding electrons
Valence electrons not used in bonding are called
nonbonding electrons, or lone-pair electrons
◦ Nitrogen atom in ammonia (NH3)
Shares six valence electrons in three covalent
bonds and remaining two valence electrons
are nonbonding lone pair
72
Learning Check
How many hydrogen atoms does phosphorus
bond to in forming phosphine, PH?
73
Solution
How many hydrogen atoms does phosphorus
bond to in forming phosphine, PH?
H H 3
H P H P
H H
Hint: Draw the electron dot structure and then
use Hydrogen to provided the needed bonded
electrons
74
Learning Check
Howmany hydrogen atoms does Carbon
need in forming chloroform, CH?Cl
H C Cl
75
Solution
Howmany hydrogen atoms does Carbon
need in forming chloroform, CH?Cl
3
H C Cl
H H
H
Cl H C Cl C
H C HH Cl
H H
76
1.5 The Nature of Chemical Bonds:
Valence Bond Theory
Covalent bond forms when two atoms
approach each other closely so that a
singly occupied orbital on one atom
overlaps a singly occupied orbital on the
other atom
Two models to describe covalent bonding.
77
Bond Energy
Reaction 2 H· H2 releases 436 kJ/mol
Product has 436 kJ/mol less energy than two
atoms:
H–H has bond strength of 436 kJ/mol.
(1 kJ = 0.2390 kcal; 1 kcal = 4.184 kJ)
78
Bond Length
Distance
between nuclei
that leads to
maximum
stability
If too close,
they repel
because both
are positively
charged
If too far apart,
bonding is weak
79
1.6 sp3 Orbitals and the Structure of
Methane
Carbon has 4 valence electrons (2s2 2p2)
In CH4, all C–H bonds are identical (tetrahedral)
sp3 hybrid orbitals: s orbital and three p orbitals
combine to form four equivalent, unsymmetrical,
tetrahedral orbitals (sppp = sp3), Pauling (1931)
80
The Structure of Methane
sp3 orbitals on C overlap with 1s orbitals on 4
H atoms to form four identical C-H bonds
Each C–H bond has a strength of 436 (438)
kJ/mol and length of 109 pm
Bond angle: each H–C–H is 109.5°, the
tetrahedral angle.
81
1.7 sp3 Orbitals and the Structure of
Ethane
Two C’s bond to each other by overlap of an
sp3 orbital from each
Three sp3 orbitals on each C overlap with H 1s
orbitals to form six C–H bonds
C–H bond strength in ethane 423 kJ/mol
C–C bond is 154 pm long and strength is 376
kJ/mol
All bond angles of ethane are tetrahedral
82
1.8 sp2 Orbitals and the
Structure of Ethylene
sp2 hybrid orbitals: 2s orbital combines with
two 2p orbitals, giving 3 orbitals (spp = sp2).
This results in a double bond.
sp2 orbitals are in a plane with120° angles
Remaining p orbital is perpendicular to the
plane
83
Bonds From sp2 Hybrid
Orbitals
Two sp2-hybridized orbitals overlap to form a bond
p orbitals overlap side-to-side to formation a pi () bond
sp2–sp2 bond and 2p–2p bond result in sharing four
electrons and formation of C-C double bond
Electrons in the bond are centered between nuclei
Electrons in the bond occupy regions are on either side
of a line between nuclei
84
Structure of Ethylene
H atoms form bonds with four sp2 orbitals
H–C–H and H–C–C bond angles of about 120°
86
Orbitals of Acetylene
Two sp hybrid orbitals from each C form sp–sp
bond
pz orbitals from each C form a pz–pz bond by
sideways overlap and py orbitals overlap similarly
87
Bonding in Acetylene
Sharing of six electrons forms C C
88
89
1.10 Hybridization of Nitrogen
and Oxygen
Elements other than C can have hybridized
orbitals
H–N–H bond angle in ammonia (NH3) 107.3°
C-N-H bond angle is 110.3 °
N’s orbitals (sppp) hybridize to form four sp3
orbitals
One sp3 orbital is occupied by two nonbonding
electrons, and three sp3 orbitals have one
electron each, forming bonds to H and CH3.
90
1.11 Molecular Orbital
Theory
A molecular orbital (MO): where electrons are most
likely to be found (specific energy and general shape)
in a molecule
91
Molecular Orbitals in
Ethylene
The bonding MO is from combining p orbital
lobes with the same algebraic sign
The antibonding MO is from combining lobes
with opposite signs
Only bonding MO is occupied
92
1.12 Drawing Structures
Drawing every bond in organic
molecule can become tedious.
Several shorthand methods have
been developed to write
structures.
Condensed structures don’t have
C-H or C-C single bonds shown.
They are understood.
e.g.
93
3 General Rules:
1) Carbon atoms aren’t usually shown. Instead a
carbon atom is assumed to be at each
intersection of two lines (bonds) and at the end
of each line.
94
Summary
Organic chemistry – chemistry of carbon compounds
Atom: positively charged nucleus surrounded by
negatively charged electrons
Electronic structure of an atom described by wave
equation
◦ Electrons occupy orbitals around the nucleus.
◦ Different orbitals have different energy levels and
different shapes
s orbitals are spherical, p orbitals are dumbbell-
shaped
Covalent bonds - electron pair is shared between
atoms
Valence bond theory - electron sharing occurs by
overlap of two atomic orbitals
Molecular orbital (MO) theory, - bonds result from
combination of atomic orbitals to give molecular
orbitals, which belong to the entire molecule
95
Summary (cont’d)
Sigma () bonds - Circular cross-section and are
formed by head-on interaction
Pi () bonds – “dumbbell” shape from sideways
interaction of p orbitals
Carbon uses hybrid orbitals to form bonds in organic
molecules.
◦ In single bonds with tetrahedral geometry, carbon has
four sp3 hybrid orbitals
◦ In double bonds with planar geometry, carbon uses
three equivalent sp2 hybrid orbitals and one
unhybridized p orbital
◦ Carbon uses two equivalent sp hybrid orbitals to
form a triple bond with linear geometry, with two
unhybridized p orbitals
Atoms such as nitrogen and oxygen hybridize to form
strong, oriented bonds
◦ The nitrogen atom in ammonia and the oxygen atom
in water are sp3-hybridized
96
Learning Check:
Based on the octet rule, which line-bond
structures is/are correct?
H H H H H H H H
H C C C H H C C C H H C C C H H C C C H
H H H H
A B C D
1. A and B
2. A and C
3. B and D
4. Only B
5. Only C
97
Solution:
Based on the octet rule, which line-bond
structures is/are correct?
H H H H H H H H
H C C C H H C C C H H C C C H H C C C H
H H H H
A B C D
1. A and B
2. A and C
3. B and D
4. Only B
5. Only C
98
Learning Check:
Which of these statements concerning p-
orbitals is false?
101
Solution:
What is the hybridization of the oxygen-
bonded carbon atom in the following
molecule?
H3 C
N C O
1. s
2. p
3. sp
4. sp2
5. sp3
102
Learning Check:
What is the hybridization of nitrogen
atom in trimethylamine :N(CH3)3?
1. sp
2. sp2
3. sp3
4. dsp2
5. unhybridized
103
Solution:
What is the hybridization of nitrogen
atom in trimethylamine :N(CH3)3?
1. sp
2. sp2
3. sp3
4. dsp2
5. unhybridized
104
Learning Check:
What type of orbital is not used in
constructing the molecule shown below?
O
O
1. s
2. p
3. sp
4. sp2
5. sp3
105
Solution:
What type of orbital is not used in
constructing the molecule shown below?
O
O
1. s
2. p
3. sp
4. sp2
5. sp3
106
Learning Check:
What is the molecular formula of the
molecule shown below?
O
1. C8H12O
2. C8H11O
3. C8H7O
4. C7H7O
5. C7H10O
107
Solution:
What is the molecular formula of the
molecule shown below?
O
1. C8H12O
2. C8H11O
3. C8H7O
4. C7H7O
5. C7H10O
108
Learning Check:
Electrons cannot occupy an antibonding
molecular orbital.
1. True
2. False
109
Solution:
Electrons cannot occupy an antibonding
molecular orbital.
1. True
2. False
110
Learning Check:
How many hydrogen atoms are present in the
naturally-occurring terpene α-terpinene shown
below?
1. 14
2. 15
3. 16
4. 17
5. 18
111
Solution:
How many hydrogen atoms are present in the
naturally-occurring terpene α-terpinene shown
below?
1. 14
2. 15
3. 16
4. 17
5. 18
112
Learning Check:
Select the best condensed structural
formula for the following molecule:
HO OH
H
1. (CH3)2CHCH2COHOHCOH
2. CH3CH3CHCH2C(OH)2CHO
3. (CH3)2CHCH2C(OH)2CHO
4. (CH3)2CHCH2C(OH)2COH
5. CH3CHCH3CH2C(OH)2CHO
113
Solution:
Select the best condensed structural
formula for the following molecule:
HO OH
H
1. (CH3)2CHCH2COHOHCOH
2. CH3CH3CHCH2C(OH)2CHO
3. (CH3)2CHCH2C(OH)2CHO
4. (CH3)2CHCH2C(OH)2COH
5. CH3CHCH3CH2C(OH)2CHO
114
Learning Check:
What is the correct order of carbon-
carbon bond lengths in ethane, ethylene
and acetylene?
1. ethane < ethylene < acetylene
2. ethane < acetylene < ethylene
3. ethylene < ethane < acetylene
4. ethylene < acetylene < ethane
5. acetylene < ethane < ethylene
6. acetylene < ethylene < ethane
115
Solution:
What is the correct order of carbon-
carbon bond lengths in ethane, ethylene
and acetylene?
1. ethane < ethylene < acetylene
2. ethane < acetylene < ethylene
3. ethylene < ethane < acetylene
4. ethylene < acetylene < ethane
5. acetylene < ethane < ethylene
6. acetylene < ethylene < ethane
116
Learning Check:
What kind of orbital and with how many
nodal planes is shown in the picture
below?
119
Solution:
What is the best description of bond
length?
1. a distance between nuclei that yields the
best orbital overlap
2. a distance between nuclei that yields the
smallest nuclear-nuclear repulsion
3. a distance between nuclei that yields the
smallest electron-electron repulsion
4. a distance between nuclei that yields the
largest electron-nuclei attraction
5. a distance between nuclei that is a
compromise of all electrostatic interactions
120
Learning Check:
What is the O-C-O bond angle in
potassium carbonate, K2CO3?
1. 60°
2. 90°
3. 109.5°
4. 120°
5. 180°
121
Solution:
What is the O-C-O bond angle in
potassium carbonate, K2CO3?
1. 60°
2. 90°
3. 109.5°
4. 120°
5. 180°
122
Learning Check:
What is the relative orientation of
two π orbitals in acetylene?
1. 60°
2. 90°
3. 109.5°
4. 120°
5. 180°
123
Solution:
What is the relative orientation of
two π orbitals in acetylene?
1. 60°
2. 90°
3. 109.5°
4. 120°
5. 180°
124
Learning Check:
In relation to σ bonds, which
statement about π bonds is correct?
1. π bonds are weaker and π electrons have
higher energy
2. π bonds are stronger and π electrons have
higher energy
3. π bonds are weaker and π electrons have
lower energy
4. π bonds are stronger and π electrons have
lower energy
5. π bonds and σ bonds have equal strengths,
and their electrons have the same energies
125
Solution:
In relation to σ bonds, which
statement about π bonds is correct?
1. π bonds are weaker and π electrons have
higher energy
2. π bonds are stronger and π electrons have
higher energy
3. π bonds are weaker and π electrons have
lower energy
4. π bonds are stronger and π electrons have
lower energy
5. π bonds and σ bonds have equal strengths,
and their electrons have the same energies
126
Learning Check:
Which of the orbitals shown below can be
occupied in a hydrogen atom?
A B C D
1. A
2. B
3. C
4. D
5. Any one of these
127
Solution:
Which of the orbitals shown below can be
occupied in a hydrogen atom?
A B C D
1. A
2. B
3. C
4. D
5. Any one of these
128
Learning Check:
Which statement about the antibonding
orbital in H2 is false?
1. sp
2. sp2
3. sp3
4. sp3d
5. nitrogen is not
hybridized
131
Solution:
What is the hybridization of nitrogen
in :NCCH3?
1. sp
2. sp2
3. sp3
4. sp3d
5. nitrogen is not
hybridized
132
Each shell (floor of the Hotel)
Hotel Model
Has subshells (s,p,d,f)
n = 4 (4th floor) d
p
32 e-
s
n = 3 (3rd floor) d
p 18 e-
s
p
n = 2 (2nd floor) 8 e-
s
n = 1 (1st floor) s 2 e-