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Edited by
AJAY KUMAR
PAWAN KUMAR SINGH
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List of Contributors xi
Biography xv
1.1 Introduction 1
1.2 Microbial Diversity Analysis 2
1.3 Plant Growth Promoting Rhizobacteria 3
1.4 Spatio-Temporal Changes and Factor Affecting PGPR Diversity 5
1.5 Phosphate Solubilization 6
1.6 Siderophore Production 7
1.7 Nutrient Exchange 8
1.8 Microorganisms in Agriculture 8
1.9 Future Perspective 10
1.10 Conclusions 10
References 11
2.1 Introduction 17
2.2 Cataloguing the Plant-Microbe Interaction 19
2.3 Factors Governing Plant-Microbe Interactions 24
2.4 Applications of Plant-Microbe Interactions 32
2.5 Conclusion and Future Perspectives 33
References 34
Further Reading 39
v
vi Contents
4.1 Introduction 67
4.2 PGPR as BCAs and their Mode of Actions 68
4.3 Proteomic Perspective on Biocontrol 75
4.4 Conclusion and Future Perspective 76
References 79
Further Reading 83
Index 253
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LIST OF CONTRIBUTORS
Deepti Barnawal
Department of Environmental Science, School of Environmental Sciences, Babasaheb
Bhimrao Ambedkar University (A Central University), Lucknow, Uttar Pradesh, India
Nidhi Bharti
Department of Botany, Savitribai Phule Pune University, Pune, Uttar Pradesh, India
Manoj Chaudhary
Crop Production Division, ICAR-Indian Grassland and Fodder Research Institute, Jhansi,
Uttar Pradesh, India
Krishna Kumar Choudhary
Department of Plant Sciences, School of Basic and Applied Sciences, Central University
of Punjab, Bathinda, Punjab, India
Mukesh Choudhary
Crop Production Division, ICAR-Indian Grassland and Fodder Research Institute, Jhansi,
Uttar Pradesh, India
Matthew T. Elmore
Department of Plant Biology, Rutgers University, New Brunswick, NJ, United States
Akanksha Gupta
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Lokesh Kumar Jat
Department of Soil Science and Agricultural Chemistry, Agricultural Research Station,
Alwar, S.K.N. Agriculture University, Jobner, Rajasthan, India
Pooja Kannojia
National Centre of Organic Farming, Ministry of Agriculture and Farmers Welfare,
Hapur Road, Ghaziabad, Uttar Pradesh, India
Manoj Kaushal
International Institute of Tropical Agriculture, Ibadan, Nigeria
Jitendra Keshri
Department of Food Quality & Safety, Institute for Postharvest and Food Sciences,
The Volcani Center, ARO, Rishon LeZion, Israel
Kathryn L. Kingsley
Department of Plant Biology, Rutgers University, New Brunswick, NJ, United States
Kurt P. Kowalski
U.S. Geological Survey, Great Lakes Science Center, Ann Arbor, MI, United States
xi
xii List of Contributors
Anupam Kujur
Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Ajay Kumar
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Akshay Kumar
Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Virendra Kumar Mishra
Institute of Environment and Sustainable Development, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Kapil Deo Pandey
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Bhanu Prakash
Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Mahendra Prasad
Crop Production Division, ICAR-Indian Grassland and Fodder Research Institute, Jhansi,
Uttar Pradesh, India
Awadhesh Kumar Shukla
Department of Botany, K S Saket PG College Ayodhya, Faizabad-224123 affiliated
to Dr. Ram Manohar Lohia Avadh University, Faizabad, Uttar Pradesh, India
Amit Kishore Singh
Botany Department, Kamla Nehru Post Graduate College, Raebareli, Uttar Pradesh,
India
Divya Singh
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Gurudatta Singh
Institute of Environment and Sustainable Development, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Monika Singh
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
P.K. Singh
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
List of Contributors xiii
xv
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CHAPTER ONE
1.1 INTRODUCTION
Currently the chemical fertilizers are used by farmers to supplement
the essential nutrients to the soil associated plant system widely. The ease
of availability and the environmental concerns of chemical fertilizers in
special relation to the N fertilizers are real issues of today’s agriculture.
However, the use of chemical fertilizers has its own merits and demerits
in agriculture land application and sustainable crop yields. Hence, there is
an urgent requirement to alternative strategies in order to enhance the
crop production and maintain the nutrient in the soil for ecological bal-
ance in agro-ecosystem. In the present scenario, the use of microbial
inoculants or plant growth promoting rhizobacteria (PGPR) is promising
and widely accepted practices in intensive agriculture for the sustainable
agricultural production. PGPR are free-living soil bacteria that colonize
root rhizosphere/of plant and promote the growth in terms of crop yields
(Kumar et al., 2014a,b).
Earlier researcher has investigated that the rhizosphere is more diverse
for bacteria than the surrounding bulk soil. These rhizospheric microbes
derive benefit from the plant roots because it secretes metabolites that can
be utilized as nutrients. It is reported that the bacterial population in the
rhizosphere is found 101000 times higher than bulk soil (Lugtenberg
and Kamilova, 2009). To exert their beneficial effects in the root environ-
ment, bacteria should have to be rhizosphere competent, that is, able to
compete well with other rhizospheric microbes for nutrients secreted by
the roots. The discriminative use of food source by the microbes in root
zone is not still well understood (Uren, 2007). An exception is the com-
position of the root exudates of tomato, in which organic acids, followed
by sugars, are the major components (Lugtenberg et al., 2001). Study was
carried out by the earlier researcher and they have confirmed the role of
organic acids in root colonization and found that the mutants affected in
organic acid utilization are poor competitive in root colonization compare
to the parental strain (De Weert et al., 2007). It is reported that only a
small part of the root surface is covered by bacteria, while, there is better
chance of bacterial growth between epidermal cells and areas where side
roots appear. This chapter highlights the diversity of PGPR and their
potential exploitation in agricultural landscape in order to enhance the
sustainable crop production.
1.10 CONCLUSIONS
The use of bacterial fertilizers has made significant improvement in
terms of growth, health, and yield of plants. The mechanism by which
Ecology and Diversity of Plant Growth Promoting Rhizobacteria in Agricultural Landscape 11
REFERENCES
Ahemad, M., Kibret, M., 2014. Mechanisms and applications of plant growth promoting
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Altieri, M.A., 1991. How best can we use biodiversity in agroecosystems? Outlook Agr
20, 1523.
Araujo, A.S.F., Leite, L.F.C., Santos, V.B., Carneiro, R.F.V., 2009. Soil microbial activity
in conventional and organic agricultural system. Sustainability 1, 268276.
Arshad, M., Frankenberger, W.T.J., 1998. Plant growth regulating substances in the rhizo-
sphere: microbial production and functions. Adv Agron 62, 145151.
Barazani, O., Friedman, J., 1999. Is IAA the major root growth factor secreted from
plant-growth-mediating bacteria? J Chem Ecol 25 (10), 23972406. Available from:
https://doi.org/10.1023/A:1020890311499.
Bashan, Y., de-Bashan, L.E., 2010. Chapter two—how the plant growth-promoting bac-
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Beneduzi, A., Ambrosini, A., Passaglia, L.M.P., 2012. Plant growth-promoting rhizobac-
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12 Awadhesh Kumar Shukla
Miss Eleanor Morrison to Reginald Montrose, Esq., Murray Hill Hotel, New
York City.
November 19th.
Dear Mr. Montrose: Thank you so much for that lovely philopena
present. How charming of you to have thought of that! Won’t you take
dinner with us next Thursday, at half after eight, and let me thank you in
person? After dinner you may dance the cotillon with Miss Fairfax. There! is
not that an inducement? I have a cousin whom I want you to meet, too—she
is just returning to America and is very learned, and not quite your style, I
fear, but she will doubtless be good for you after me!
Most cordially yours,
Eleanor Morrison.
Mrs. Olmsted Morrison to Mrs. Franklin Bennett, care of Brown, Shipley &
Co., London.
November 25th.
My Dear Alma: What a surprise! I can scarcely collect my thoughts
sufficiently to write intelligently on the subject. I really was never more
surprised in all my life—more intensely and thoroughly surprised. But I
must try and tell you connectedly all about it. To begin with—Helen did not
come on the twentieth as we had expected, but telegraphed us that she was
detained in Boston and would not reach Baltimore until the morning of the
twenty-fourth. This was very annoying, as I was most anxious about her
gown for the dinner, and then I imagined that she would be utterly dragged
out after travelling all night. Dear Eleanor would have been, I am quite sure.
But Helen seems to be one of those distressingly healthy people—no nerves,
no sensitiveness. She quite laughed when I asked her if she were not tired!
Well—she came on the eleven-five train, and, Alma, she is not at all the
kind of person I had expected. She is even handsome after a certain style of
her own—not one that I admire—not at all Eleanor’s style. But certainly it
could be much worse. The men even seemed to find her quite good-looking.
She has certainly preserved her complexion wonderfully well—and as for
her being short-sighted! Between ourselves I am sure it is only an excuse for
using a very beautiful lorgnon, and for looking rather intently at one in a sort
of meditative way which I consider rather offensive, but which Percy
Beaufort told me he found most attractive. He is very disappointing, by the
way; I had expected so much of him, but I find him quite an ordinary young
man.
I was really shocked at Helen’s levity. I had expected from her superior
education that her mind would be above trivialities, but the way she laughed
and seemed to enjoy the conversation of Reggie Montrose and Jerry Fairfax!
and if she had confined her attentions to those boys! But, Alma, she even
tried to infatuate Colonel Gray and Professor Radnor! Two such men! She is
far from being the quiet, thoughtful student I had expected to so enjoy. Why,
she had the audacity to say to Colonel Gray, after one of his irascible
explosions at things in general—“My dear Colonel, you are a living example
of squaring the circle—quite round yet full of angles!” You know how
rotund the Colonel is, Alma. Think of it! To Colonel Gray, whose irritability
is simply proverbial. And he actually seemed to enjoy it! Men of a certain
age seem to be only too willing to make fools of themselves if a young girl
looks at them. And Percival Beaufort, who is so interested in London
charities, could not extract one word from her on the subject, I believe; at
any rate I distinctly heard her giving him an animated account of the last
“Eights Week,” and he was inquiring solicitously who was the coxswain for
Magdalen! Even Professor Radnor seemed to lose his head, though I believe
she talked more sensibly to him than to the others, for he told me that she
was one of the few women he had ever met who seemed to thoroughly
understand Abel’s demonstration of the impossibility of solving a quintic
equation by means of radicals—whatever that means.
By the way, we need not have worried about her gown at all. It was quite
presentable, and had in it a quantity of rare old point d’Alençon which Helen
says Henry picked up in Paris. It quite vexed me to think that I have none of
that pattern—it is especially beautiful.
Eleanor would add a word, but she is feeling quite ill this morning, dear
child! She was so worried over the dinner. At the very last moment Grace
Fairfax failed her, and she was obliged to invite Marie de Rochemont in her
place. We were especially sorry that Grace could not come, and that Jerry
did. He is getting completely spoiled; his assurance and inconsiderateness
are truly wonderful.
By the way, we have changed our plans for the winter slightly. We are
going to the Bermudas for a month, and Helen will visit friends in Boston
for the rest of the winter. Write soon and let me know how Mr. Bennett is
feeling. Address here, all our mail will be forwarded.
As ever, your devoted friend,
Marian Morrison.