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JUAN I. RODRÍGUEZ
Instituto Politecnico Nacional, Mexico
FERNANDO CORTÉS-GUZMÁN
Universidad Nacional Autónoma de Mexico, Mexico
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ISBN: 978-0-323-90891-7
ix
x Contributors
20
Photochemistry: A topological
perspective
Marco Antonio Garcia-Revilla and Ismael Vargas-Rodrı́guez
Department of Chemistry, Natural and Exact Sciences Division, University of Guanajuato,
Guanajuato, Mexico
1. Introduction
The study subjects of Photochemistry are the phenomena associated with the absorption
and emission of electromagnetic radiation by chemical systems. Among such processes are
the following [1]:
• Spectroscopic phenomenon as fluorescence and phosphorescence.
• Luminescent chemical reactions, as the combustion and bioluminescence, for instance the
plankton luminescence and the flashlights of fireflies.
• Photo promoted chemical reactions, as the photosynthesis [1] and the retinal reaction of the
human vision [1].
• Nonlinear optical properties, related to the nonlinear behavior of the induced polarization
of the charge distribution by the interaction of a substance with the electromagnetic
radiation. This phenomenon has become of great importance in telecommunications,
computing, optical devices, microscopy, among others.
Photochemical reactions (PR) are chemical transformations in which an excited state is
reached because of the incidence of electromagnetic radiation, in these reactions the excitation
degree of reactants can be easily controlled using a monochromatic beam of the required
wavelength. Hence, PR are preferred over the thermal reactions, also known as dark
reactions. Besides, thermal reactions deal with a Maxwell-Boltzman distribution of ground
state energies of translational, vibrational, rotational, electronic, and nuclear contributions,
for this reason, the probability of causing a chemical reaction is lower than in the photochem-
ical case [2]. In addition, there are many new synthetic routes to obtain organic compounds
which are not possible to be synthesized by thermal reactions [3].
Advances in Quantum Chemical Topology Beyond QTAIM 515 Copyright # 2023 Elsevier Inc. All rights reserved.
https://doi.org/10.1016/B978-0-323-90891-7.00015-3
516 20. Photochemistry: A topological perspective
Internal conversion
Cross between systems
Absorption
Fluorescence
External conversion
Phosphorescence
transformation. Fig. 20.2B shows the case in which a vertical excitation hits an excited state
with no energy barrier, in such case the chemical transformation occurs straightforward.
A nonradiative process takes place through an isoenergetic energy transference, such pro-
cesses are classified as:
I. Internal Conversion (IC), which happens through an isoenergetic transference from the
S1 excited state to a high energetic vibrational mode of S0, followed by a full vibrational
relaxation of the ground state.
II. Intersystem Crossing (ISC), which is performed though an isoenergetic transference
from a vibrational mode of S1 excited state to a vibrational mode of a tripled state,
let’s say to the T1 triplet state.
Radiative processes are classified as:
I. Normal Fluorescence, which is observed when a full vibrational relaxation along the S1
vibrational modes is followed by a S1 ➔ S0 emissive transition.
II. Resonant Fluorescence, which is observed through a S1➔ S0 emissive transition from
the initial vibrational mode of S1 to the S0 ground state.
Lifetime of Fluorescence processes is about 107 s.
III. Phosphorescence, which is observed when a ISC is followed by a transition between
electronic states of different multiplicity, T1 ➔ S0. Lifetime of T1 is about 105 s and
the transition probability to S0 is low. This is the reason why this process is slower than
the fluorescence.
The radiative processes discussed above are the basis of the fluorescence spectroscopy in
instrumental analysis [6], green fluorescent protein as in vivo marker in genetics [7], tumor
markers in anticancer treatment [8], among others.
2. Theory 519
Another relevant phenomenon is the Chemiluminescence, which is the light emission
caused by a chemical reaction forming a excited state followed by the deactivation of this ex-
cited state to the ground state [9]. The bioluminescence phenomena are those in which bio-
chemical reactions are involved in the formation of the referred excited states, such reactions
are commonly catalyzed by enzymes [10]. There are several applications of chemilumines-
cence, for instance, the luminol reaction in forensic chemistry, the understanding of luciferase
activity in fireflies, the use of oxidation reactions of tetracene in light bars, among others.
2. Theory
Electromagnetic plane waves (Fig. 20.3) are of special interest because its simplicity, they
propagate in a single direction having a plane wavefront, the points of the wave packet
are in the same phase forming a plane. In addition, the electric and magnetic fields oscillate
each one in a plane as well, forming a linear polarized electromagnetic wave.
The expressions for the electric and magnetic field of such a wave are
FðEÞ ¼ iFx ¼ iF0x cos ðwt kzÞ, (20.5)
B ¼ jBy ¼ jB0y cos ðwt kzÞ, (20.6)
where F0x and B0y are the amplitudes of the electric and magnetic field, respectively, and w
and k are the wave frequency and wave number, respectively. An extra simplification can be
made, the spatial contribution of the electric field and the entire magnetic component can be
neglected,
FðEÞ ¼ iFx ¼ iF0x cos ðwtÞ, (20.7)
for the case of interaction of electromagnetic waves with organic compounds. Such approx-
imation is based on (a) the fact that the magnitude of the electric field is larger than the mag-
nitude of the magnetic field. The correlation between electric and magnetic field magnitudes
is given by F(E) ¼ cB, where c is the speed of light; and (b) the wave lengths of the electromag-
netic radiation are 3 orders of magnitude, 103 Å, larger than the size of a molecular system.
Nevertheless, such approximation is not valid for metallic systems, in which the electric
bands, and therefore the respective wavelengths, are close to the size of the metal.
There are two correlated phenomena experienced by a molecule during the interaction
with an electromagnetic wave: the vertical excitation, and the charge density polarization.
QCT is a useful tool to study such phenomena.
The quality of the wavefunction describing the ground and excited states is related to the
choice of the electronic structure method to solve the electronic Schr€ odinger equation. There
is a large variety of methods to address such issue. As a matter of fact, the multiconfi-
gurational (MC) methods display the best agreement with experimental measurements.
2. Theory 521
Nevertheless, MC implementations scaling, and the resulting computational cost becomes
prohibitive for the characterization of systems of chemical interest, however, MC results
are used as a reference. For large systems with chemical interest, a way to afford this problem
is using the Time Depending Density Functional Theory [11].
Two issues must be studied during a photochemical process:
1. Polarization of the charge density.
2. Transition probabilities between possible excited states.
2.1 Polarization
The electric field, F, of the photonic incident beam interact with the substance charge dis-
tribution and produce the forces fi ¼ qiE [12], where q is the charge. The induced polarization
during the electric field interaction is observed in Fig. 20.4A. The polarization can be defined
as the change in the charge distribution in a substance due to the interaction with the electro-
magnetic radiation. Any modification in the charge configuration between nuclei and the
electron density in a molecular system induces polarization (Fig. 20.4B). There are two types
of polarization that can be observed: linear (Fig. 20.4), and nonlinear (Fig. 20.5). The linear
polarization happens when the polarization behaves as a linear function of the electric field
(Fig. 20.4C). Besides, induced polarization in macroscopic scale can be expressed as [12,13]:
P ¼ χ ð1Þ F, (20.8)
where P is the induced polarization, F is the electric field and χ (1) is the coefficient of linear
susceptibility.
Linear polarization is observed when a material interacts with a moderate electric field,
nevertheless, when the intensity of the electric field is relatively large, the polarization could
behave in a nonlinearly manner. Observe the nonlinear behavior in induced polarization as a
function of time (Fig. 20.5A), modifications in the charge distribution (Fig. 20.5B) and in the
induced polarization as a function of the applied electric field (Fig. 20.5C), in comparison with
the linear counterpart.
FIG. 20.4 Linear polarization, (A) light beam electric field (solid curve) as a function of time, induced polarization
(solid curve) as a function of time, (B) polarization of a material as a function of time, (C) linear induced polarization as
a function of the applied electric field. Reprinted with permission from M. Pinnow, Materials for nonlinear optics: Chemical
perspectives. ACS symposium series no. 455. Edited by S. R. Marder, J. E. Sohn and G. D. Stucky. ISBN 0-8412-1939-7. Amer-
ican Chemical Society, Washington, DC, 1991. US $ 129.95. Acta Polym. 44 (1993) 112–112. https://doi.org/10.1002/actp.1993.
010440216. Copyright 2022 American Chemical Society.
522 20. Photochemistry: A topological perspective
LINEAR
INDUCED POLARIZATION
–
CHARGE
ELECTRIC FIELD
–
–
DISTRIBUTION + + +
t0 t1 t2
INDUCED
• NONLINEAR
POLARIZATION
t0 t1 t2 APPLIED FIELD
TIME
(a) (b) (c)
FIG. 20.5 Nonlinear polarization, (A) light beam electric field (solid curve) as a function of time, nonlinear-induced
polarization (solid curve) as a function of time, (B) polarization of a material with nonlinear optical activity as a func-
tion of time, (C) nonlinear-linear behavior of second order induced polarization as a function of the applied electric
field. Reprinted with permission from M. Pinnow, Materials for nonlinear optics: Chemical perspectives. ACS symposium series
no. 455. Edited by S. R. Marder, J. E. Sohn and G. D. Stucky. ISBN 0-8412-1939-7. American Chemical Society, Washington,
DC, 1991. US $ 129.95. Acta Polym. 44 (1993) 112–112. https://doi.org/10.1002/actp.1993.010440216. Copyright 2022 Amer-
ican Chemical Society.
where E(0)
n is the electronic energy of the nth state. The zero super index stablishes the equiv-
alence of the electronic Hamiltonian with the unperturbed Hamiltonian of this approach, for
this reason ψ (0) (0)
n is the wavefunction of the nth unperturbed system and En the energy of the
unperturbed nth state. The inclusion of the perturbation gets the Hamiltonian
b ð0Þ ðrÞ + H
b ðr, tÞ ¼ H
H b 0 ðr, tÞ, (20.23)
If the system initially is in the state ψ (0)
n (r) and, over the effect of electromagnetic radiation
represented by the perturbation, evolves to a different electronic state ψ (0) m (r) the transition
probability Pn!m(t) is a relevant quantity to calculate, because the most probable transitions
are those observed in a spectroscopic experiment.
In first place, the solution of the time-dependent Schr€ odinger equation for this perturbed
system is needed, using a wavefunction Ψ(r, t) the equation to solve is
∂Ψðr, tÞ b h ð0Þ i
iħ ¼ Hðr, tÞΨðr, tÞ ¼ H b ðrÞ + H b 0 ðr, tÞ Ψðr, tÞ, (20.24)
∂t
Expanding the wavefunction Ψ(r, t) as a linear combination of the unperturbed systems ψ (0)
n ,
X ð 0Þ
iE t
Ψðr, tÞ ¼ cn ðtÞψ ðn0Þ e n =ħ , (20.25)
n
And solving for a particular m state with a small perturbation the transition probability is
ð 0 2
1 t b 0 iωmn t0 0
Pn!m ðtÞ ¼ 2 Hmn e dt , (20.26)
ħ 0
D E
b 0 ¼ ψ ðm0Þ jH
b 0 ðr, tÞjψ ðn0Þ and ωmn ¼ Em En . The perturbation considered in the inter-
ð 0Þ ð 0Þ
where H mn ħ
action of electromagnetic radiation with mater is just the temporal contribution of the electric
field, and the interaction of such electric field is given by:
V int ¼ μ F, (20.27)
P
where the μ is the electric dipolar moment of the molecule (μ ¼ qi ri) and F is the temporal
i
contribution to the electric field (F ¼ Fox cos (wt)). For this reason, in the framework of the di-
polar approximation, the perturbative Hamiltonian is written as
b 0 ðtÞ ¼ μx Fox cos ðwtÞ,
H (20.28)
3. QTAIM-photochemistry 525
P
where μx ¼ i q i xi . Substituting this expression in the transition probability, we get
D E2
ð0Þ ð0Þ 2
jFox j2 ψ m jμx jψ n ð t0
0 iωmn t 0
0
Pn!m ðtÞ ¼ cos ð wt Þe dt , (20.29)
ħ2 0
It is of special interest for the QCT community to compute the functional group contribu-
tions of such probabilities.
3. QTAIM-photochemistry
where the time-independent contribution to the transition probability is the first term of the
product, Pn!k. Following with the time-independent term, it can be written in the integral
form
"ð ! #2
X N
∗
Pn!k ¼ dτψ n er i ψ k , (20.31)
i
where (eri) is the dipole operator of the ith electron and the sum is over all the N electrons of
the system. Due to the multiplicative properties of the dipolar moment operator, the proba-
bility can be written as
ð 2
Pn!k ¼ N dτψ ∗n ðer Þψ k , (20.32)
526 20. Photochemistry: A topological perspective
where the integration is over all N electronic coordinates. Defining a transition density
ð
N dτ0ðψ n ψ k +ψ k ψ n Þ
∗ ∗
Hence, the first polarizability, αn(r), using the dipolar approximation, considering the per-
b 0 ¼ eF r, is written in terms of the first order change in the density as
turbation H
ð
αn ðrÞ ¼ erρðn1Þ ðrÞ ¼ eN dτ0 ψ ðn0Þ∗ b
r ψ ðn1Þ + ψ ðn1Þ∗b
r ψ ðn0Þ , (20.39)
X Mnk
αn ðrÞ ¼ e rρ ðrÞ, (20.40)
k6¼n
½En Ek nk
3. QTAIM-photochemistry 527
Integration of such polarizability in an atomic basin gives the atomic polarizability
ð
αbn ðΩÞ ¼ αn ðrÞdr, (20.41)
Ω
One of the main problems of the atomic polarizabilities, αn(r), is the origin dependence be-
cause of the position vector r. Nevertheless, to solve this origin dependence a substitution of
r 5 rΩ +XΩ is used to build the following expression of the total first polarizability
2 3
X6 ð ð
7 X
h i
αðrÞ ¼ 4e dr rΩ ρð1Þ ðrÞ e dr ρð1Þ XΩ 5 ¼ αp ðΩÞ + qð1Þ ðΩÞXΩ , (20.43)
Ω Ω
Ω Ω
where the atomic moment Mnk(Ω) is obtained with the following integration:
ð
Mnk ðΩÞ ¼ e dr rΩ ρnk ðrÞ, (20.47)
Ω
Besides, it is possible to regroup the nuclear coordinate terms into contributions propor-
tional to the charge transferred from an atomic basing (Ω) to a neighboring atomic basin (Ω0 ).
With this regard, the atomic polarizability gets two contributions one that comes from the
polarization, αp(Ω), and the second one by the charge transference between neighboring
atomic basins, αc(Ω).
X
αðΩÞ ¼ αp ðΩÞ + αc ðΩÞ ¼ αp ðΩÞ + ½Xc ðΩjΩ0 Þ XΩ qð1Þ ðΩ0 Þ, (20.48)
Ω0
The transition probability density can be constructed in analogy with Eqs. (20.38) and
(20.44),
Pn!k ðrÞ ¼ Mnk Mkn ðrÞ ¼ Mkn ∙ðerÞρnk ðrÞ, (20.49)
528 20. Photochemistry: A topological perspective
where Mkn(r) is determined by the respective transition density. Once again, the substitution
of r 5 rΩ +XΩ and subsequent integration gives the expression
ð X
Pn!k ¼ dr Pn!k ðrÞ ¼ Mnk ðΩÞ + qnk ðΩÞXΩ , (20.50)
Ω
Ð
where Mnk(Ω) is the atomic transition dipole, and qnk ðΩÞ ¼ e dr ρnk ðrÞ is the induced atomic
Ω
charge produced by charge density polarization. As in the case of the polarization, it is pos-
sible to solve the origin-dependent problem replacing the sum of nuclear coordinates by a set
of terms describing the dipolar contribution to the charge, qnk(Ω), which is induced by the
polarization between a neighboring atomic basin, Ω0 .
" #
X
0 0
Pn!k ¼ Mnk ∙ Mnk ðΩÞ + ½X ðΩjΩ Þ XΩ qnk ðΩ Þ ,
c
(20.51)
Ω0
where the XΩ is the position vector of the nuclear attractor of the topological atom Ω, μc and μp
are the charge transfer and polarization terms, respectively. In addition, the atomic charge is
defined as
ð
qðΩÞ ¼ ZΩ ρ0 ðrÞdτ ¼ ZΩ N ðΩÞ, (20.56)
Ω
and the first moments M(Ω) are calculated with the following equation:
ð
MðΩÞ ¼ r Ω ρ0 ðrÞdτ, (20.57)
Ω
where the electronic position vector with origin at the nuclear attractor of the topological atom
Ω is rΩ 5r 2 XΩ. Hence, the change in the dipolar moment of such system is calculated by
X ð
Δμ ¼ Za ΔXa rρðn1Þ ðrÞdτF, (20.58)
a
4. QTAIM applications in photochemistry 529
where the topological expression of μ and 4μ are independent of the choice of the origin for a
neutral molecule. With the corresponding form using the QTAIM partitioning
X
Δμ ¼ f½ΔqðΩÞX Ω + ZΩ ΔXΩ + ΔMðΩÞg ¼ Δμc + Δμp , (20.59)
Ω
As in the case of Polarizabilities and transition probabilities it is possible to solve the origin
dependence considering regrouping terms involving nuclear position vectors, as a result the
dipolar moment origin independent is calculated as the sum of atomic dipolar moment con-
tributions in the following manner:
( )
X X X
0 0
μnk ¼ μnk ðΩÞ ¼ Mnk ðΩÞ + ½X ðΩjΩ Þ XΩ qn ðΩ Þ ,
c
(20.60)
Ω Ω Ω0
A relevant correlation between the ellipticity and the photophysical properties was
reported by Presselt and co-workers [21], where the relation between π-conjugation and ex-
citation efficiency is used to study optical efficiency of Phenyl-Terpyridine Ru(II) and Zn(II)
complexes (Fig. 20.6). Presselt and co-workers analyzed the correlation between π-conjuga-
tion, ellipticity and electronic transition energies of pyridyl-phenyl ligands of such com-
plexes, the lowest transitions are related to a Metal-to-ligand charge transfer dominated by
HOMO-LUMO excitations. The changes in the ellipticity are performed changing the substit-
uent (R) at the para position of phenyl group. The conclusion was that the HOMO-LUMO en-
ergy gap decreases with increasing pyridyl-phenyl ellipticity, therefore it is possible to get a
desirable photophysical properties tunning pyridyl-phenyl ellipticity.
In 2012, J.N. Latosinska and co-workers [22] analyzed the photodegradation of nifedipine
(NIF), an antihypertensive drug, such molecule is highly sensitive to the electromagnetic ra-
diation and degrades to nitrosoniphelipine (NO-NIF), which is not an antihypertensive mol-
ecule but an antioxidative agent. In a combined experimental-computational study,
FIG. 20.6 Schematic representation of the ligands (tpy-ph-R, left), the homoleptic Zn(II) complexes ([Zn(tpy-ph-
R)2]2+, middle), and the heteroleptic Ru(II) complexes ([(tert-butyl-tpy)Ru(tpy-ph-R)]2+, right) as well as the various
substituents R in the 4-ph position. Reprinted with permission from M. Presselt, B. Dietzek, M. Schmitt, S. Rau, A.
Winter, M. J€
ager, et al., A concept to tailor electron delocalization: applying QTAIM analysis to phenylterpyridine compounds.
J. Phys. Chem. A 114 (50) (2010) 15163–74. Copyright 2021 American Chemical Society.
530 20. Photochemistry: A topological perspective
where χ i(X, t) is the time-dependent nuclear wave packet, and χ i(X, t) is the ith electronic state.
Ψ(X, x, t) is calculated through the solution of the time-dependent Schr€ odinger equation, at
the same time the set of adiabatic states {ψ ai } is obtained together with their respective eigen-
values, {Eai }, and nuclear wave packets {Xai }. The time evolution of the average of some prop-
erties of the electron density is characterized by means of the QTAIM partitioning. The time
evolution of the electron density itself can be expressed as
ð X n
χ i ðX, tÞ∗ χ j ðX, tÞρX ðrÞ,
ij
hρðrÞi ¼ dX (20.62)
ij
ij
where ρX(r) is the transition density between ith and jth states. In the same way, the time evo-
lution of the atomic charge is calculated with the expression
ð ð
hqðΩÞiðtÞ ¼ ZΩ N dr dτ0 jΨj2 , (20.63)
Ω
ð X
n
χ i ðX, tÞ∗ χ j ðX, tÞqX ðΩÞ,
ij
hqðΩÞiðtÞ ¼ ZΩ dX (20.64)
ij
The reactive scattering of H+3 and the photodissociation of LiF is studied based on the time
evolution of the atomic charges. An important conclusion is that the time evolution of the
atomic charges is consistent with the adiabatic and diabatic nature of the studied processes.
A molecular graph MG is defined as the set of critical points and flux lines connecting these
critical points [24], among such set is the bond path which is the conjunction of bond critical
points (BCP) and flux lines connecting such BCP with nonboring nuclei. The characterization
of the evolution of the molecular graph along a chemical transformation is a commonly used
tool to get insight of a chemical reaction. Besides, the quantity and type of critical points and
5. Alternative topological approaches 531
paths linking such critical points serve as a qualitative characterization of the connectivity in a
molecule. Changes in molecular graphs along a chemical reaction display qualitative infor-
mation about breaking and forming chemical interactions. In addition, in QTAIM it is possi-
ble to quantitatively measure the bond-path curvature (BPC) separating two bonded nuclei
using the ratio
BPL GBL
BPC ¼ , (20.65)
GBL
where BPL is the bond path length and GBL is the geometric bond length defined as the
internuclear separation. Nevertheless, molecular graphs and BPC did not show significant
changes during electronic state excitations, MG and BPC are qualitatively the same in the
ground and excited states at a particular molecular configuration. For this reason, molecular
graphs cannot be used to track the evolution of a molecule that experiences photochemical
transformations, a similar situation happens for some chemical descriptors of QTAIM. For
instance, the Laplacian of the electron density at the bond critical point (r2ρ(r)bcp) get an av-
erage of the total curvature of the electron density, collapsing in a scalar the information of the
charge accumulation of each spatial direction. So, 2-D(MG) and 1-D (r2ρ(r)bcp) topological
descriptors are unsuccess in the study of photochemical transformations, there are some ap-
proaches to solve this problem: the New Generation QTAIM and the stress tensor approaches.
The New Generation QTAIM methods (NG-QTAIM) is presented as a re-interpretation of
topological aspects of the chemical bonding, a “bond-path framework set” (B) is defined and
it can be used to differentiate the topology of the electron density of excited states from the
ground state. Such set is built by three linkages p, q and r, which are related to the eigenvalues
of the hessian matrix e1, e2 and e3, respectively. The path r is the orthodox QTAIM bond path
where e3 is the eigenvector with the positive eigenvalue, the direction of depletion of charge
density. Furthermore, e1, e2 are the second and first preferred directions in which the charge is
accumulated, respectively. The p and q paths are constructed as the collection of tip path
points defined by the expressions
pi ¼ ri + εi e1,i
(20.66)
qi ¼ ri + εi e2:i
where ri is the ith point at the r path, εi is the ellipticity evaluated in ri, e1, i and e2, i are the
eigenvectors of the accumulative charge density at ri. Such eigenvectors are weighted by
the ellipticity εi, this permit to track the changes in the charge accumulation pattern not only
at the BCP, but in all the bond path. There is no sense to define the path r in terms of the el-
lipticity because the eigenvector e3 is independent of the eigenvalues defining the ellipticity.
This approach is an alternative to the characterization of the Laplacian of the electron density,
in which the information of each curvature collapses at the moment of the evaluation of the
trace of the hessian matrix at the BCP or at any point along the bond path. An important ob-
servation is that p, q and r paths are orthogonal each other because are constructed using or-
thogonal eigenvectors e1,i, e2,i and e3,i. The p and q are used to define the path lengths
Xn1
H∗ ¼ p p , (20.67)
i¼1 i+1 i
Xn1
H¼ q qi , (20.68)
i¼1 i+1
532 20. Photochemistry: A topological perspective
The path lengths are related to the behavior of the charge accumulation along the bond
path. In the limit of zero ellipticity, H path length is equal to the bond path length of r.
The simplicity of this approach is useful to characterize bonding in excited states of photo-
chemical processes.
An useful quantity to characterize the covalency of a chemical bond is the local energy den-
sity defined as [24]:
Hðrb Þ ¼ Gðrb Þ + V ðrb Þ, (20.69)
where G(rb) and V(rb) are the local kinetic and potential energy densities at the bond critical
point, respectively. H(rb) < 0 of closed shell interactions (r2ρ(rb) > 0) show a covalent interac-
tion, for the same closed shell interaction H(rb) > 0 means a lack of covalent character. A strong
shared shell interaction displays r2ρ(rb) < 0 and H(rb) < 0, for example, such situation corre-
sponds to CdC and CdH bonds.
Lσ ¼ 0 when the magnitude of BCPs shift and the direction of dr0 (s) are constant.
Using NG-QTAIM, Huang and co-workers [26] studied the photoisomerization of the dou-
ble bond of fulvene at the ground and excited states, with the objective of finding a topological
representation of the chemical bond that differentiates the ground and excited states binding
properties. Besides, an exhaustive exploration of the Potential Energy Surface (PES) was
performed, connecting the Frank-Condon point with the conical intersections occurring
through the torsional coordinate (TC) and the Bond Length Alternation (BLA). Those findings
reveal that traditional QTAIM bond paths cannot differentiate between the binding proper-
ties of ground and excited states. Nevertheless, the bond-framework set B¼¼ [26] was suc-
cessful to reveal binding differences, the path longitude H displays clear differences for both
states in the deactivation of excited state through the BLA and TC see Fig. 20.7.
Tian and co-workers [27] have analyzed the photochemical ring aperture of 1,3-
cyclohexadiene (CGD) at 1,3,5-hezatriene (HT), an archetypical ring rupture mediated by
electromagnetic radiation relevant in biochemistry and in organic chemistry. One of the most
relevant experimental fact is an observed ratio between CHD and HT of (70:30), Tian and
co-workers proposed a rationalization of such ratio based on NG-QTAIM results. The calcu-
lated mechanism at the SSR/ωPBE/6-31G* show a ratio CHD/HT of (60:40), elemental steps
of such mechanism are: The photoexcitation is a π-bonding π-antibonding electronic promo-
tion of a S0 ground state (11A) to a S1 excited state (11B in the C2 symmetry);, where upon the
3.20
c2v C2-C6(S0)
3.10 c2v C2-C6(S1)
3.00
2.90
H
2.80
2.70
2.60
2.50
–0.25 –0.20 –0.15 –0.10 –0.05 0.00 0.05 0.10 0.15 0.20
BLA
FIG. 20.7 The corresponding variations of length H of the eigenvector-following path. The variation of the BPL
with the BLA coordinate is consistent with the variation of the H(rb) values in that the BPL decreases increase in the
BLA coordinate showing the weakening of the C2–C6 BCP. Reprinted with permission from W.J. Huang, R. Momen, A.
Azizi, T. Xu, S.R. Kirk, M. Filatov, S. Jenkins, Next-generation quantum theory of atoms in molecules for the ground and excited
states of fulvene, Int. J. Quantum Chem. 118 (2018) e25768. https://doi.org/10.1002/qua.25768.
534 20. Photochemistry: A topological perspective
nuclear wave-packet slides down the steep slope on the S1 PES and the character of the state
changes from 11B to 21A (a π to σ * transition). After that, the nuclear wave-packet continues to
move on the S1 PES and reaches an S1/S0 conical intersection (CI), where it switches to the S0
state. Having switched to the S0 state, the nuclear wave-packet splits into two branches, one
traveling back to CHD and another propagating forward to HT. The latest gas phase exper-
imental measurements yield 70:30 CHD:HT branching ratio, which is generally consistent
with 60:40 ratio for the reaction in solution, see Fig. 20.8. The authors demonstrate that the
dynamic correlation is extremely important to optimize the conical intersections. The analysis
of the NG-QTAIM of C5dC6 bonds along the minimum energetic profile shows that, before
reaching the conical intersection, H(rb), λ3σ and ε display values indicating a large covalent
stability of the C5dC6 bond at the S0 state compared with the S1.
The latter is a plausible explanation of the (70:30) CHD/HT experimental ratio. A similar
example of the rationalization of photochemical process by NG-QTAIM is the reported by Bin
and co-workers [28], in which the oxirane photochemical ring-opening is modeled and char-
acterized by 3-D topological paths.
Light-driven molecular motors are systems suitable to perform unidirectional rotary
motion, in which a double bond photoisomerization is the driving force of such movement
[29–32]. The photoexcitation breaks a π-bond, resulting in a rotary motion of a molecular moi-
ety in the direction dictated by the properties of the potential energy surface of the return to
the ground state. It is known that such photoisomerization occurs through a conical intersec-
tion S1/S0 [33–35]. Wang and co-workers have studied the topological properties of 3-[(2S)-2-
fluoro-2-methyl-1-indanylidene]-1-methyl-2-methyl-indole (F-NAIBP) along non adiabatic
molecular dynamic trajectories [36,37]. This study deals with the characterization of two types
of dynamic trajectories, Fast (F) and Slow (s). Topological and NG-QTAIM properties were
calculated at conformations along F and S trajectories with the goal of get chemical insight
relative to the speed of such dynamic trajectories. Wang conclude that the bond-path frame-
work set, together with H and H* trajectories, are better descriptors than MG and BPC, pro-
viding a better explanation of the preference of S1 over S0 to activate the rotary molecular
S2
(21A)
S1
(11B)
C.I.
S1 C.I.
(11B)
S0
HT
(11A)
CHD
FIG. 20.8 Scheme of photochemical ring-opening reaction of CHD. Reprinted with permission from T. Tian, T. Xu, S.R.
Kirk, M. Filatov, S. Jenkins, Next-generation quantum theory of atoms in molecules for the ground and excited state of the ring-
opening of cyclohexadiene, Int. J. Quantum Chem. 119 (2019) e25862. Copyright 2021.
5. Alternative topological approaches 535
motor. In addition, there is a fluorine-hydrogen bond path (F13-H36) that is present only in
the S dynamic trajectory, such interaction displays a covalent character that stuck the molec-
ular rotor. Furthermore, the set of one of the main conclusions is that traditional 2-D molec-
ular graphs and local descriptors are not sufficient to make clear correlations between
topological properties and trajectory speed. Nevertheless, Wang present the stress tensor
trajectory for dynamic trajectories of the reaction pathway, such stress tensor trajectory
can be used to explain the different lifetimes of dynamic trajectories. Along the F trajectory,
up the conical intersection, the components of the stress tensor in the real space are isotro-
pic, this means that a spherical trajectory is expected with an efficient rotation. Meanwhile,
at the S trajectory the t3 component (t3 ¼ e3σ dr) is significantly larger than the rest. Besides,
t3 show large positive values, which indicates important translational movements along the
bond path additional to the torsion, this situation is interpreted as an inefficient rotatory
movement.
The Interacting Quantum Atoms Approach (IQA) is a modern tool to obtain a partition of
the total energy of a molecular system, the contributions to the energy of a system in IQA hold
great physical significance and are used to interpret chemical information of reactivity of mol-
ecules. Pendás and co-coworkers have defined a partitioning of energy using the QTAIM
partitioning of the real space through the density matrix formulation of the average of the
total energy of a Quantum System [38]. In IQA, the total energy of a system can be expressed
ΩΩ0
as a sum of intra-basing energy components, EΩ net, and an inter-basin term, Eint .
X X 0
E¼ EΩ
net + EΩΩ
int , (20.73)
Ω Ω>Ω0
where the EΩ net includes the electronic kinetic energy, electron-nucleus attraction, and
0
electron-electron repulsion at the Ω basin. Meanwhile, EΩΩ
int takes account of electron-nucleus,
electron-electron, and nucleus-nucleus interactions between basins Ω and Ω0 [38]. In addition,
the inter-basin terms can be separated in two, the classical and the exchange-correlation
contributions.
0 0 0
EΩΩ ΩΩ ΩΩ
int ¼ Eclass + Exc , (20.74)
0
EΩΩ
classtakes account of Coulomb-like nucleus-nucleus and electron-electron potential, for
0
this reason it is used as the ionic contribution to a chemical interaction. In addition, EΩΩ
xc is
the quantum counterpart of an interaction, commonly related to a covalent-like contribution
to a chemical bond. In addition, the deformation energy is defined as
EΩ Ω Ω
def ¼ Enet Enet,0 , (20.75)
where EΩ
net, 0 is the reference state, usually the isolated moiety of a molecular system. EΩ def be-
comes a useful quantity to evaluate the change in energy from a reference state to the
studied one.
In a recent contribution, Fernández-Alarcón and co-workers [39] show the capability of
IQA to reveal the effect of intermolecular interactions in excitation energies of molecular
clusters, for the case of the solvatochormic effect in the water dimer. In the first place, authors
reveal the changes in the interatomic surfaces and the dipolar moment of water monomer
because of the S0 ➔ S1 excitation. Besides, such changes affect the energetic contributions,
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his trial for burglary and murder. Mr. George was quite a notable
cracksman in his day, which was one pretty remote from ours in
everything but the conservatism of the law. He was ‘housebreaker’ in
the indictment; he was arrested by the Tombland patrol; and he was
carried to court in a ‘chair,’ attended by a party of the City Guard.
“George, says the story, was an elegant figure of a man, and not
at all regardless of the modes. Dark blue coat with brass buttons,
fancy vest, black satin breeches, white silk stockings, hair full
dressed and a brooch in his bosom—that was how he appeared
before his judges.
“The facts were simple enough. On a night of November, a shot
and a screech had been heard in Mr. Browbody’s house in Unthank,
a ward of the city; an entrance had been made through a window,
opportunely open, by the Watch as opportunely handy, and the
housebreaker had been discovered, a warm pistol in his hand,
standing over the body of old Nicholas, who lay dead on the floor
with his head blown in.
“The burglar was found standing, I say, like as in a stupor; the
room was old Browbody’s study; the door from it into the passage
was open, and outside was discovered the body of a girl, Miss Ellen,
lying, as it were, in a dead faint. There you have the situation dashed
in broad; and pretty complete, you’ll agree, for circumstantial
evidence.”
“Wait, my friend,” began Brindley, putting up a fat pompous hand.
“Circumstantial, I think you said?”
“Yes, I said it,” answered the Deputy Clerk coolly; “and if you’ll
listen, you’ll understand—perhaps. I said the girl was in a faint, as it
were, for, as a matter of fact, she never came out of it for seven
months.”
He leant back, thumbing the ashes into his pipe, and took no heed
while the murmurs of incredulity buzzed and died down.
“Not for seven months,” he repeated, then. “They called it a
cataleptic trance, induced by fright and shock upon witnessing the
deed; and they postponed the trial, waiting for this material witness
to recover. But when at last the doctors certified that they could put
no period to a condition which might, after all, end fatally without real
consciousness ever returning, they decided to try Mr. Hussey; and
he was tried and condemned to be hanged.”
“What! he made no defence?” said a junior contemptuously.
“Well, sir, can you suggest one?” asked the other civilly.
“Suicide, of course.”
“With the pistol there in the burglar’s own hand?”
“Well, he made none, you say.”
“No, I don’t say it. He declared it was ridiculous attempting a
defence, while he lacked his one essential witness to confirm it. He
protested only that the lady would vindicate him if she could speak.”
“O, of course!”
“Yes, of course; and of course you say it. But he spoke the truth,
sir, for all that, as you’ll see.
“He was lodged in Norwich Jail, biding the finish. But, before the
hangman could get him—that time, at least—he managed to break
out, damaging a warder by the way. The dogs of the law were let
loose, naturally; but, while they were in full cry, Mr. Hussey, if you’ll
believe me, walks into a local attorney’s office with Miss Ellen on his
arm.”
Brindley turned in his chair, and gave a little condescending laugh.
“Incredible, ain’t it?” said the Deputy Clerk. “But listen, now, to the
affidavits of the pair, and judge for yourselves. We’ll take Miss Ellen’s
first, plain as I can make it:—
“ ‘I confess,’ says she, ‘to a romantic attachment to this same
picturesque magsman, Mr. Hussey. He came my way—never mind
how—and I fell in love with him. He made an assignation to visit me
in my guardian’s house, and I saw that a window was left open for
him to enter by. My guardian had latterly been in a very odd,
depressed state. I think he was troubled about business matters. On
the night of the assignation, by the irony of fate, his madness came
to a head. He was of such methodical habits by nature, and so
unerringly punctual in his hour for going to bed, that I had not
hesitated to appoint my beau to meet me in his study, which was
both remotest from his bedroom, and very accessible from without.
But, to my confusion and terror, I heard him on this night, instead of
retiring as usual, start pacing to and fro in the parlour underneath. I
listened, helpless and aghast, expecting every moment to hear him
enter his study and discover my lover, who must surely by now be
awaiting me there. And at length I did hear him actually cross the
passage to it with hurried steps. Half demented, dreading anything
and everything, I rushed down the stairs, and reached his room door
just in time to see him put a pistol to his head and fire. With the flash
and report, I fell as if dead, and remember nothing more till the voice
of my beloved seemed to call upon me to rise from the tomb—when I
opened my eyes, and saw Hussey standing above me.’
“Now for Mr. Hussey’s statement:—
“ ‘I had an assignation with a young lady,’ says he, ‘on the night of
so-and-so. A window was to be left open for me in Unthank. I had no
intent whatever to commit a felony. I came to appointment, and had
only one moment entered when I heard rapid footsteps outside, and
a man, with a desperate look on him, hurried into the room, snatched
a pistol from a drawer, put it to his head, and, before I could stop
him, fired. I swear that, so far from killing him, I tried to prevent him
killing himself. I jumped, even as he fell, and tore the pistol from his
hand. Simultaneous with his deed, I heard a scream outside. Still
holding the weapon, I went to the door, and saw the form of her I had
come to visit lying in that trance from which she has but now
recovered. As I stood stupefied, the Watch entered and took me.
From that time I knew that, lacking her evidence, it was hopeless to
attempt to clear myself. After sentence I broke prison, rushed
straight to her house, found her lying there, and called out upon her
to wake and help me. She answered at once, stirring and coming out
of her trance. I know no more than that she did; and there is the
whole truth.’ ”
The Deputy Clerk stopped. No one spoke.
“Now, gentlemen,” said he, “I don’t ask you to pronounce upon
those affidavits. In the upshot the law accepted them, admitting a
miscarriage of justice. What I ask your verdict on is this: Could the
law, after quashing its own conviction, hold the man responsible for
any act committed by him during, and as the direct result of, that
wrongful imprisonment?”
This started the ball, and for minutes it was tossed back and forth.
Presently the tumult subsided, and Brindley spoke authoritatively for
the rest—
“Certainly it could, and for any violence committed in the act.
Provocation may extenuate, but it don’t justify. Prison-breaking, per
se, is an offence against the law; so’s being found without any visible
means of subsistence, though your pocket may just have been
picked of its last penny. Any concessions in these respects would
benefit the rogue without helping the community. I won’t say that if
he hadn’t, by assaulting the warder, put himself out of court——”
“That was where he wanted to put himself,” interrupted the Deputy
Clerk. It was certain that he was deplorably flippant.
Brindley waved the impertinence by.
“The offence was an offence in outlawry,” he said.
“But how could it be,” protested the Clerk, “since, by the law’s own
admission, he was wrongfully convicted? If he hadn’t been, he
couldn’t have hurt the warder. If you strike me first, mayn’t I hit you
back? I tell you, the law acknowledged that it was in the wrong.”
“Not at all. It acknowledged that the man was in the right.”
“Isn’t that the same thing?”
“O, my friend! I see you haven’t got the rudiments. Hussey was a
prisoner; a criminal is a prisoner; ergo, Hussey was a criminal.”
“But he was a prisoner in error!”
“And the law might very properly pardon him that; but not his
violence in asserting it.”
The Deputy Clerk shrugged his shoulders hopelessly.
“Well, it was all the same in the end,” said he; “for it hanged him
for pointing out its error to it, and so spoiled a very pretty romance.
The lady accompanied him to the scaffold, and afterwards died mad.
Sic itur ad astra. I will cap your syllogism, sir. An ass has long ears;
the law has long ears; ergo, the law is an ass.”
“Young man,” said Brindley, with more good humour than I
expected, “you have missed your vocation. Take my advice, and go
to writing for the comic papers.”
“What!” cried the Deputy Clerk. “Haven’t I been a law reporter all
my life!”
THE FIVE INSIDES
I’ll example you with thievery.—“Timon of Athens.”
The dear old lady was ninety, and it was always Christmas in the
sweet winter of her face. With the pink in her cheeks and the white of
her hair, she came straight from the eighteenth century in which she
was born. They were not more at odds with nature than are the hips
and the traveller’s joy in a withered hedge; and if at one time they
paid to art, why it was a charitable gift to a poor dependent—nothing
more, I’ll swear.
People are fond of testing links with the past. This sound old
chatelaine had played trick-track, and dined at four o’clock. She had
eaten battalia pie with “Lear” sauce, and had drunk orgeat in Bond
Street. She had seen Blücher, the tough old “Vorwärts,” brought to
bay in Hyde Park by a flying column of Amazons, and surrendering
himself to an onslaught of kisses. She had seen Mr. Consul
Brummell arrested by bailiffs in the streets of Caen, on a debt of so
many hundreds of francs for so many bottles of vernis de Guiton,
which was nothing less than an adorable boot-polish. She had heard
the demon horns of newspaper boys shrill out the Little Corporal’s
escape from Elba. She had sipped Roman punch, maybe;—I trust
she had never taken snuff. She had—but why multiply instances?
Born in 1790, she had taken just her little share in, and drawn her full
interest of, the history, social and political, of all those years,
fourscore and ten, which filled the interval between then and now.
Once upon a time she had entered a hackney-coach; and, lo!
before her journey was done, it was a railway coach, moving ever
swifter and swifter, and its passengers succeeding one another with
an ever more furious energy of hurry-scurry. Among the rest I got in,
and straight fell into talk, and in love, with this traveller who had
come from so far and from scenes so foreign to my knowledge. She
was as sweet and instructive as an old diary brought from a bureau,
smelling of rose-leaves and cedar-wood. She was merry, too, and
wont to laugh at my wholly illusory attachment to an age which was
already as dead as the moon when I was born. But she humoured
me; though she complained that her feminine reminiscences were
sweetmeats to a man.
“You should talk with William keeper,” she said. “He holds on to the
past by a very practical link indeed.”
It was snowy weather up at the Hall—the very moral of another
winter (so I was told) when His Majesty’s frigate “Caledonia” came
into Portsmouth to be paid off, and Commander Playfair sent
express to his young wife up in the Hampshire hills that she might
expect him early on the following morning. He did not come in the
morning, nor in the afternoon, nor, indeed, until late in the evening,
when—as Fortune was generous—he arrived just at the turn of the
supper, when the snow outside the kitchen windows below was
thawing itself, in delirious emulation of the melting processes going
on within, into a rusty gravy.
“You see,” said Madam, “it was not the etiquette, when a ship was
paid off, for any officer to quit the port until the pennant was struck,
which the cook, as the last officer, had to see done. And the cook
had gone ashore and got tipsy; and there the poor souls must bide
till he could be found. Poor Henry—and poor little me! But it came
right. Tout vient à qui sait attendre. We had woodcocks for supper. It
was just such a winter as this—the snow, the sky, the very day. Will
you take your gun, and get me a woodcock, sir? and we will keep the
anniversary, and you shall toast, in a bottle of the Madeira, the old
French rhyme.”
I had this rhyme in my ears as I went off for my woodcock—