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생명정보의 융합적 활용지도서II - 1
생명정보의 융합적 활용지도서II - 1
교사용 지도 자료
차례
I. 생물정보학이란? Ⅲ. 단백질체학
1. 생물정보학은 무엇일까? 1. DNA 염기 서열 및 단백질 아미노산 서열 정렬
01 생물정보학의 정의
01 유사 아미노산 서열 단백질 검색
02 생물정보학이 꿈꾸는 세상
02 단백질 유사도의 진화적 이해
2. 생물정보학 배경
01 생물정보학의 역사 2. 단백질 합성 후 화학적 수식화
02 생물정보학의 기초 이론 01 PTM(Post-Translational Modification)
02 UniProt의 PTM
03 PTM 예측
Ⅱ. 유전체 정보학 3. 단백질 3차원 구조 데이터베이스 검색 및 구조 가시화
1. 염기 서열 분석은 어떻게 가능할까? 01 UniProt의 단백질 3차원 구조 학습
01. DNA 합성 원리
02 3POZ을 이용한 단백질 3차원 구조 학습
02. 염기 서열 분석 방법
03 단백질 3차원 구조 가시화 소프트웨어 실습
2. 유전체 정보학은 무엇일까?
01. 돌연변이 DB 검색하기 04 단백질 3차원 원자 구조 가시화, 거리 및 각도 측정, 이면각 및 꼬임각 측정
02. 유전자 DB 검색하기
II. 유전체 정보학
• https://www.youtube.com/watch?v=pVxVJoo4Z_0
2. 유전체 정보학은 무엇일까? 01. 돌연변이 DB 검색하기
▮ 돌연변이를 정의할 수 있다.
▮ 돌연변이 DB를 활용하여 탐색할 수 있다 .
• GRCh38 / 37
2. 유전체 정보학은 무엇일까? 01. 돌연변이 DB 검색하기
▮ 돌연변이를 정의할 수 있다.
▮ 돌연변이 DB를 활용하여 탐색할 수 있다 .
• 유전자 명명
• https://www.genenames.org/
• 마우스 유전자: 첫자만 대문자, 이탤릭체
• 마우스 단백질: 첫자만 대문자, 정자체
• 휴먼 유전자: 전부 대문자, 이탤릭체
• 휴먼 단백질: 전부 대문자, 정자체
2. 유전체 정보학은 무엇일까? 01. 돌연변이 DB 검색하기
▮ 돌연변이를 정의할 수 있다.
▮ 돌연변이 DB를 활용하여 탐색할 수 있다 .
2. 유전체 정보학은 무엇일까? 01. 돌연변이 DB 검색하기
▮ 돌연변이를 정의할 수 있다.
▮ 돌연변이 DB를 활용하여 탐색할 수 있다 .
2. 유전체 정보학은 무엇일까? 01. 돌연변이 DB 검색하기
▮ 돌연변이를 정의할 수 있다.
▮ 돌연변이 DB를 활용하여 탐색할 수 있다 .
• NC_00023은 X염색체에 있으며 크기는 156M bp이고, 11번째 버전이다. 이 화면에서 FASTA를 클릭하면 관련된 염기 서열을 내
려 받을 수 있고 Send to를 클릭하며 염기 서열을 이메일로 파일로 받을 수 있다.
2. 유전체 정보학은 무엇일까? 02. 유전자 DB 검색하기
• 이메일 주소 입력
• Submit 클릭
2. 유전체 정보학은 무엇일까? 02. 유전자 DB 검색하기
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGC
ACTTGTACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATTGTACGTTTACTACTT
GGATAACCGTGGTAATTCTAGAGCTAATACATGCGAAGAGTCCCGACTTCTGGAAGGGATGTATTTATTA
GATTCAAAACCAATGCGGGTTCTGCCCGGTGCTTTGGTGATTCATAGTAACTGATCGAATCGCATGGCCT
TGCGCTGGCGATGTTTCATTCAAATTTCTGCCCTATCAACTGTCGATGGTAAGGTGTTGGCTTACCATGG
TTACAACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAA
GGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACTCAGGGAGGTAGTGACAAGAACTAACAATACAGG
GCTTTTGTAAGTCTTGTAATTGGAATGAGTACAACTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAG
TCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTC
GTAGTTGGACTTCGGGGTGGCACGGCCGGTCCGCCGCAAGTGTGTCACTGGCCGGGCCGCTCTTCTTCGC
AAAGACCGCGTGTGCTCTTGACTGAGTGTGCGCGGGAGTTGCGACGTTTACTTTGAAAAAATTAGAGTGT
TCAAAGCAGGCCAGCGCTTGAATACATAAGCATGGAATAATGGAATAGGACTTGGGTTCTATTTTGTTGG
TTTCTGGAACCTGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTCGTTGTCAGAGGTGAAAT
TCTTGGATTTACGAAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAA
AGTTAGAGGCTCGAAGACGATCAGATACCGTCCTAGTTATAACCATAAACGATGCCGACTAGGGATCAGA
GAGTGTTATTGGATGACCTCTTTGGCACCTTAGGGGAAACCAAAGTTTTTGGGTTTCGGGGGGAGTATGG
TTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGCTTAATTTGAC
TCAACACGGGGAAACTCACCAGGTCCAGACATAGGAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCT
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAACGAG
ACCTTAACCTGCTAAATAGTTACGCCCATCGCGATGGGCAACTAACTTCTTAGAGGGACTGTTGGTGTTT
AACCAAAGTCAGGAAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC
TGACGATGTCAACGAGTCTCTCCTTGGCCGAAAGGTCTGGGTAATCTTCTCAAACATCGTCGTGCTGGGG
ATAGATCATTGCAATTTTTGATCTTGAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAT
TACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGGACTCCTGAT
TGGCGCCGCGCCCCGGCCACGGAGCAGCGGACTGCCGAGAAGTTGTTCAAACTTGATCATTTAGAGGAAG
TAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA
ATGCTTACTCAAAGATTAAGCCATGCATGTCTTAGTACAAAGTTTCATACACTTAAACCGCGGATGGCTC
ATTATAACAGCTATGATTTGAGAAATCCTATCATTTTGCCATGGGATAACTGTGGTAATCCTAAAGCTAA
TATCTAACAAAATGCCGTGACTCACAAAGCGGCGGATTTATTAAATCAAAATCANCCTGGTGAAAACCGG
TTTTTTGATGACNCTGGATAATTTTACTGAGTACAACCTTTGTGTTGACAACATATCTCTTGAANTGGCT
GACCTATCAGCTTNCGATGGTAAGATCAAAGCTTACCATGGTTGTAACGGGTAACGGGGAATCAGTGTTC
GATTCCGGAGAGGGAGCCTGAGAACGGCTACCACATCCACGGAAAGCAGCAGGCGCGTAAATTACCCAAT
ACCGGTTCGGTGAGGTAGTGACAAAAAATAACAATATGGGCCCTAGTGGTTTCATAATTGCAATGAGAAC
ATTTTAAATACTTTATCAAGTATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTC
CAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAAATTGAGGAAAAAGATGGTTTGAA
ATCTTTGATTGAAAGCTATCTTGTCCTTCGACGTCGTGTATATCTTTGATGCTCTTTAATGGGTGTTGAG
GATGACCGACAAGTTTACTTTGAAAAAATTAGAGTGCTTAAAGCAGGCTGATGCTTGCATATTGTTGCAT
GGAATAATAAAATAAGACTTCGGTTTTATTTTGTTGGTTTTCGAAACTGAAGTAATGATTAAAAGAGACT
GCCGGGGGCATATGTATGCTGGTGCTAGAGTGAAATTCTTAGATCATCAGCAGACAGTCTACTGCGAAAG
CATTTGCCAAGAATGTTTTCATTAATCCAGAACGAAATTCCGAGATCCAAAAACAATCAGATACCGTCCT
ATTCCTGACCCATAAACTATGCCAACTGACATTCGCGAAGGTAATTCAAATCTCCTTGCGAGAAGTCACG
GGGAAACCTAAGTCTATGGGTTCCGGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAA
GGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAATCTCACCCGGTCCGGACAC
TGTGAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGG
TGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACTCTAACCTGCTAAATAGTACATTTGTTTTA
AAATAGCAAATGCTGACTTCTTAGAGGAATAAATAGCGTTTAGCTAAATGAAAAAGAGCAATAACAGGTC
TGTGATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGGCAGTAACAGCGAGTTTAATTCCTAGC
TAGAAATGGCTGGGTAACCTGCTTAATCACTGTCGTGTCAGGAATAGTGGATTGAAATTATTCCACTTGA
ACGAGGAATTCCTAGTAAGTGCAAGTCACTAGCTTGCGCTGATTACGTCCCTGCCCTTTGTACACACCGC
CCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCGTTGGATTCCGATTTAAGAAATGGCAACATTTCT
ATAGTTGGGAAAAGACAATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGT
GAACCTGCGGAAGGATCATTA
CTGGTTGATTCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTTCAAACTTT
CACATAGTGAAACCGCGAATGGCTCATTAGATCAGTTATGGTTCCTTAGATCGTACAACTCCACTCGGAT
AACTGTGGCAATTCTAGAGCTAATACGTGCAAGAAAGCTCTGACCTCGCGGGAAGAGCGCTTTTATTAGT
TCAAAACCAACAGCGGGCCGCAAGGTCCGTTACCCCGTTTGGTGACTCTGGATAACTTTGTGCTGATCGC
ACGGCCCTGGAGCCGGCGACGTATCTTTCAAATGTCTGCCCTATCAACTTTAGATGGTACGCGACATGCC
TACCATGGTTATAACGGGTAGCGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCATGAGAAACGGCTACC
ACATCCAAGGAAGGCAGCAGGCGCGCAACTTACCCACTCCTGGAACGGGGAGGTAGTGACGAAAAATAAC
AATACGGGACTCTTTCGAGGCCTCGTAATTGGAATGAGTACACTTTAAACCCTTTAACGAGGACCTATTG
GAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT
AAAAAGCTCGTAGTTGGATCTCGGGTTTGGGCGAGCGGTCCGCCTCGGCGTCACTGCGCGACCCGACCTA
CCTGCCGGTTGTTCCCTTGGTGCTCTTGATTGAGTGCTTCGGGTGGCCGGAACGTTTACTTTGAAAAAAT
TAGAGTGCTCAAAGCAGGCGCTTCGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCTCGGTTCTA
TCTTGTTGGTTTTCGGAACTCGAGGTAATGATTAAGAGGGACAGACGGGGGGCATTCGTATTACGGTGTT
AGAGGTGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATTTGCCAAGCATGTTTTCATTAA
TCAAGAACGAAAGTCAGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCTGACCATAAACGATGCCAAC
TAGCGATCCGCCGGAGTTGCTTCTATGACTCGGCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCTG
GGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCG
CTTAATTTGACTCAACACGGGAAAACTCACCCGGTCCGGACACTGTTAGGATTGACAGATTGATAGCTCT
TTCTTGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGA
TAACGAACGAGACTCTAGCCTACTAAATAGTTCGCCGATCCCTAACTGCGTCGGCGCAACTTCTTAGAGG
GACAAGTGGCGTTTAGCCAACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCCGC
ACGCGCGCTACACTGAAGGAAGCAACGTGGATGCTGCCCTGGTCCGGAAGGACTGGGAAACCCGTTGAAT
CTCCTTCGTGCTAGGGATTGGGGCTTGTAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTC
ATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGGTTT
AGTGAGGTCCTTGGATTGGCCTCGGGACGGGGGGCGACCCCCGTGCCGTTTGTTTGCCGAGAAGACGACC
AAACTTGATCGTTTAGAGGAAGTAAAAGTCGAACAAGGTTTCCGTAGGTGAACCTGCAGAAGGATCATTA
ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAGGTACAAGCT
TGTATCAAGCGAAACTGCGGATGGCTCATTAAATCAGTCATGGTTCCTTGGAACGAGTTGCCCTACATGG
NTAACTGTGGTAATTCTAGAGCTAATACATGCTACCCAGCGCCGACCGTAAGGAAGGCGTGCTTTTATTA
GGAACAAGGCCAACCGGGCTCGTCCCGTTATGTTGGTGAACTCTGGATAACTTAGCAGATCGCACGGTCT
TCGAACCGGCGACAGATCCTTCAAACGTCTGCCCTATCAACTTTCGATGGTACGTTATGCGCCTACCATG
GTCGTAACGGGTAACGGAGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCA
AGGAAGGCAGCAGGCGCGCAAATTACCCACTCTCGACACGGGGAGGTAGTGACGAAAAATAACAATACAG
GACTCTTTCGAGGCTCTGTAATTGGAATGAGTACACTTTAAATCCTTTAACGAGGATCTACTGGAGGGCA
AGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAGTAGCGTATATTAATGCTGCTGCAGTTAAAAAGC
TCGTAGTTGTATCTAGGGCTCAGGCAAGCGGTCCCTCGCAAGGGGTGCACTGCTTTGCCTGGCCTCCCTC
GTGGTTTGCGCGCGGTTCTCTTAACTGAGTGCCGTGTGCGACCAGAACGTTTACTTTGAAAAAATTGGAG
TGTTCAAAGCAGGCGCAACAGCCTGAACAGCAGAGCATGGAATAATGGAATAGGACCTCGGTTCTATTGC
GTTGGTTTTAAGAGTCCGAGGTAATGATTGAGAGGGACTGACGGGGGCATTCGTATTGCGGTGTGAGAGG
TGAAATTCTTGGATCGCCGCAAGACGACCGACAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCAAG
AACGAAAGTTAGAGGTTCGAAGGCGATCAGATACCGCCCTAGTTCTAACCATAAACTATGCCGANCGGCG
ATTCGCCGGCGTTACCCCAATGACTCGGCAAGCAGCCCCCGGGAAACCAAAGTTTTTGGGTTCCGGGGGA
AGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCCGCGGCTT
AATTTGACTCAACACGGGAAAACTCACCCGGCCCGGACACAGTAAGGATTGACAGATTGAGAGCTCTTTC
TTGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAA
CGAACGAGACTCTGGCTTGCTAAATAGTTGCGCCACCCGCCGAGGTGGGCGACAACTTCTTAGAGGGACT
AGTGGCGTTTAGCCACGCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCCGCACG
CGCGCTACACTGAAGGAATCAGCGTGTGTCTGCCCTTGGCCGGAAGGTCTGGGTAATCCGTTGAACCTCT
TTCGTGATTAGGATAGGGAGTTGTAATTGTCTCCCTTGAACGAGGAATTCCCAGTAAGCGCGAGTCATCA
GCTCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTG
AGATCCTCGGATCGGCCGGATCGGCTCAACCGGTTCGCCGGCTCGATTCTGCGCCGAAAAGACGATCAAA
CTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCAGAAGGATCA
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACG
GCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCC
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGAT
GCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGG
CGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAAC
GTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGG
GTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTAC
CCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGA
ATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAAT
TCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCG
GGCGGTCCGCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTT
AGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCC
GCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGG
CCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCA
AGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA
GACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCAT
GACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAA
CTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAA
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTG
CATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGGCATGCT
AACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCAC
CCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTG
GCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCG
GGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAG
TCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGC
CCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG
TAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA
2. 유전체 정보학은 무엇일까? 02. 유전자 DB 검색하기