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Emerging and Re-Emerging Viral Infections: Advances in Microbiology, Infectious Diseases and Public Health Volume 6 1st Edition Giovanni Rezza
Emerging and Re-Emerging Viral Infections: Advances in Microbiology, Infectious Diseases and Public Health Volume 6 1st Edition Giovanni Rezza
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Advances in Experimental Medicine and Biology 972
Advances in Microbiology, Infectious Diseases and Public Health
Giovanni Rezza
Giuseppe Ippolito Editors
Emerging and
Re-emerging
Viral Infections
Advances in Microbiology, Infectious Diseases
and Public Health Volume 6
Advances in Experimental Medicine
and Biology
Advances in Microbiology, Infectious Diseases
and Public Health
Volume 972
Editorial Board
Irun R. Cohen, The Weizmann Institute of Science, Rehovot, Israel
N.S. Abel Lajtha, Kline Institute for Psychiatric Research, Orangeburg, NY, USA
John D. Lambris, University of Pennsylvania, Philadelphia, PA, USA
Rodolfo Paoletti, University of Milan, Milan, Italy
Subseries Editor
Gianfranco Donelli, Microbial Biofilm Laboratory, Fondazione Santa Lucia
IRCCS, Rome, Italy
The Advances in Microbiology, Infectious Diseases and Public Health Series
will provide microbiologists, hygienists, epidemiologists and infectious
diseases specialists with well-choosen contributed volumes containing
updated information in the areas of basic and applied microbiology involving
relevant issues for public health, including bacterial, fungal and parasitic
infections, zoonoses and anthropozoonoses, environmental and food micro-
biology. The increasing threat of the multidrug-resistant microorganisms and
the related host immune response, the new strategies for the treatment of
biofilm-based, acute and chronic microbial infections, as well as the devel-
opment of new vaccines and more efficacious antimicrobial drugs to prevent
and treat human and animal infections will be also reviewed in this series in
the light of the most recent achievements in these fields.Special attention will
be devoted to the fast diffusion worldwide of the new findings of the most
advanced translational researches carried out in the different fields of
microbiological sciences, with the aim to promote a prompt validation and
transfer at clinical level of the most promising experimental results. The book
series publishes review and original research contributions, short (data)
reports as well as guest edited thematic book volumes. All contributions
will be published online first and collected in (thematic) book volumes. There
are no publication costs.This series is a subseries of Advances in Experimen-
tal Medicine and Biology 2015 Impact Factor: 1.953 Advances in Experi-
mental Medicine and Biology has been publishing exceptional works in the
field for over 30 years and is indexed in Medline, Scopus, EMBASE,
BIOSIS, Biological Abstracts, CSA, Biological Sciences and Living
Resources (ASFA-1), and Biological Sciences.
Emerging and
Re-emerging Viral
Infections
Advances in Microbiology, Infectious
Diseases and Public Health Volume 6
Editors
Giovanni Rezza Giuseppe Ippolito
Istituto Superiore di Sanità IRCCS IRCCS
Roma, Italy National Institute for Infectious
Diseases
Roma, Italy
v
vi Contents
Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 143
Adv Exp Med Biol - Advances in Microbiology, Infectious Diseases and Public Health (2017) 6: 1–5
DOI 10.1007/5584_2017_33
# Springer International Publishing Switzerland 2017
Published online: 1 April 2017
Keywords
Diagnostics • Emergence • Emerging infections • Quarantine • Vaccine
In the last decades, several viruses emerged, after we find several agents transmitted by Aedes spp.
cross-species passage from animal reservoirs and mosquitoes, from dengue to chikungunya and
then spreading in human populations; the Ebola Zika (McCloskey et al. 2014).
virus, two different coronaviruses causing the Vector-borne viruses are not the only
severe acute respiratory syndrome (SARS-CoV) emerging agent which represent a threat for
and the Middle-east respiratory syndrome human health, and other zoonotic viruses are
(MERS-CoV), and the Nipah virus, are increasingly impacting on the burden of disease
paradigmatic examples of biological agents at the global level (Morens and Fauci 2013). To
completely new for humans, with high epidemic this regard, zoonoses account for nearly
potential, but also prone to disappear in case two-thirds of human infectious diseases, in part
early detection and intervention are ensured due to the increasing anthropogenic pressures on
(Morse 1993; Fauci and Morens 2012). the environment. Leading drivers of infectious
Other viruses expanded their geographical disease emergence in humans from wildlife are
area of activity from the original ecological multiple and complex, and broad and novel
niche to new lands and continents, as recently approaches are required to tackle them. The
demonstrated by the large outbreaks of Zika or “One Health” approach, for example, considers
Crimean-Congo haemorrhagic fever in Spain, the human-animal-environment interface with a
and dengue in Madeira (Portugal). Several single perspective (IOM 2015). The aim is to
arboviruses represent paradigmatic examples of promote synergies among public health, informa-
microorganisms which found the conditions for tion and communication, human and animal
their spread in previously unaffected areas health, veterinary and medical approaches, envi-
inhabited by completely susceptible populations, ronmental and ecological sciences, mathematical
increasing their epidemic potential. In this group, modeling and geographic information systems,
1
2 G. Ippolito and G. Rezza
anthropological and behavioral expertise (Zumla of the infection to naı̈ve areas are likely to suc-
et al. 2015). ceed when complemented by correct informa-
Emerging viruses represent an important chal- tion, lab evidence based decision making for
lenge for global public health, and prompt inter- keeping patients under isolation, high quality
vention is needed in order to put outbreaks under care and treatment of confirmed patients.
control (McCloskey et al. 2014). First of all, With mosquito-transmitted diseases, which
early diagnosis of the agent is extremely impor- recently caused several large outbreaks in many
tant to rapidly identify the viral threat and to start poor resource countries, prevention also play a
the intervention as soon as possible (Memish major role. A paradigmatic example is
et al. 2014). To this end, a syndromic approach represented by the spread of chikungunya and
and the use of an appropriate case-definition may Zika in Latin America and Caribbean, where
be useful to hypothesize the nature of the disease. dengue was already present. However, mosquito
However, as demonstrated with Ebola in the control activities may be successful in
large outbreak occurred in West Africa in 2014, controlling local outbreaks occurring in temper-
only a small proportion of cases had hemorrhagic ate areas but do not appear able to mitigate large
manifestations, thus relying on bleeding did not epidemics in tropical areas. For this reason, the
provide a valid clue to diagnosis. Laboratory availability of safe and effective vaccines is
diagnosis is more specific and represents the essential in order to keep virus circulation under
gold standard for the diagnosis of an emergent control.
virus. However, in certain contexts, it may be There are no vaccines available against most
difficult to perform relatively sophisticated tests emerging infections, and this may be explained
under adverse environmental conditions. More- by a series of factors. First, for their own nature,
over, the lack of protective equipment and high emerging infections have often epidemic patterns
security level laboratories is an obstacle to that minimize the feasibility of large efficacy
handling potentially infected samples. To over- trials, which are now considered the gold stan-
come this problem, mobile BSL4 labs have been dard for vaccine evaluation. In fact, the conduc-
extensively provided by the international com- tion of large studies is limited by the
munity to allow Ebola virus infection diagnosis unpredictability of large outbreaks where
during the recent outbreak of Ebola in West vaccines may be tested on large population
Africa. groups; secondly, for the same reason, vaccine
Response capacity, especially by resource demand may be difficult to assess; thirdly, lim-
poor countries, and rapid intervention in the con- ited resources are allocated to vaccine research
text of explosive outbreaks is key to mitigate or and development when economic return is not
control epidemic events (Anema et al. 2014). ensured.
With diseases like Ebola, that are transmitted For example, identifying the target
through direct contact with diseased persons, populations for vaccination campaigns is not an
dead bodies, or bodily fluids, and are amplified easy task. For Ebola, health care workers in high
by the family and the hospital setting or burial risk areas might be a target, as well as health
ceremonies, avoiding contact with physical professionals who intervene in case of outbreaks.
barriers is rather efficient and productive. Finally, ring vaccination of direct and indirect
Measures as the availability of a large number contacts of infected patients might be vaccinated
of hospital beds to keep infected patients away to reduce the risk of disease and transmission in
from the community, protective equipment and an affected area.
training of health care workers to avoid direct Vaccines against a few arboviral diseases,
contact with patient fluids, restriction of such as those against yellow fever and Japanese
movements to minimize the risk of introduction encephalitis, have been extensively used. In
Preface – Emerging Viruses: From Early Detection to Intervention 3
particular, the live attenuated vaccines against specific behaviour of different species. These
yellow fever, which was created in the 1930s, factors allow to assess the epidemiological risk
has contributed to the control of the disease both for humansand to plan preventive measures
in Africa and in South America. However, a (Serra-Cobo and López-Roig 2016).
vaccine against dengue, whose target is In Azhar et al. report, an overview of Middle
represented by the local communities in affected East Respiratory Syndrome Coronavirus
area of the world, has proven to be only partially (MERS-CoV) epidemiology and its clinical
effective, and vaccines against chikungunya and features is provided. The paper highlights the
Zika are still lacking. knowledge gaps and the epidemic risk potential
Nevertheless, making vaccines and effective for global spread of this emergent coronavirus
drugs to be used as prophylaxis in case of detec- (Azhar et al. 2016).
tion of early chains of transmission of emerging The current Zika virus large outbreak occur-
viruses, as it may happen with a mutated strain of ring in Pacific Ocean and the Americas, includ-
avian influenza (i.e., a “humanized” H5N1 or ing the critical aspect for a coordinated response,
H7N9 flu virus) would be very useful if is described by Bordi et al. Several aspects, such
complemented by effective molecular surveil- as the mode of transmission, the risks associated
lance (Hui and Zumla 2015; Marston et al. 2014). with pregnancy in infected mothers, the associa-
In this volume, we present a series of article tion of the virus with severe consequences,
on mechanisms and drivers of emergence of including fetal/newborn microcephaly and
novel virus infections in human population, Guillain-Barré Syndrome in adults, are discussed
trying to focus the attention on aspects which in the paper (Bordi et al. 2016).
have not frequently addressed before. Animal models are essential for the study of
For this special issue, the articles written by emerging infections, to improve disease knowl-
internationally renowned experts cover several edge and for developing therapeutic drugs.
areas of research. In the paper by Busani et al., Warner et al. describe the use of small animal
the application of the theory of focality of models for the study of infectious diseases, with
diseases to infectious disease is discussed, special focus on the Syrian golden hamsters
providing paradigmatic examples of viral emerged as an ideal animal model, due to their
diseases (Busani et al. 2016). The proposed low cost, small size, ease of handling, and ability
approach is represented by detailed mapping of to accurately reflect disease progression in
the areas of activity of biological agents causing humans. In the paper, valuable information to
natural focal diseases along with evidence-based researchers who are deciding whether to use
interventions, such as targeted vaccination. hamsters as an animal model is provided (Warner
In Castrucci review, the Human-animal inter- et al. 2016).
face is discussed, with a a speficic focus on The 2014–2015 Ebola virus outbreak in west-
influenza. The topic is particularly important, ern Africa illustrates the threat coming from
since “humanization” of avian viruses represents emerging infectious diseases and is perceived
a persistent threat to human health (Donatelli by the public as a preeminent global health prob-
et al. 2016). lem. Nicastri et al. present the activities and the
In the Serra-Cobo and López-Roig paper, the challenging issues encountered in terms of medi-
roles played by bats in emerging infections is cal management of the patients, preparedness
presented and discussed. Maintenance and response to the outbreaks, diagnostic and
mechanisms and transmission of bat viruses research challenges (Nicastri et al. 2016).
were analyzed, taking into account the phyloge- Highly infectious diseases can spread rapidly
netic history, coevolution processes, bat adapta- across borders through travel or trade, and inter-
tion to live in different environments, and national coordination is essential to a prompt and
4 G. Ippolito and G. Rezza
Nicastri E, Castilletti C, Biava M, Fusco FM, Petrosillo N, Serra-Cobo J, López-Roig M (2016) Bats and emerging
Puro V, Lauria FN, Capobianchi MR, Di Caro A, infections: an ecological and virological puzzle. Adv
Ippolito G (2016) Enabling rapid response to the Exp Med Biol. [Epub ahead of print] PubMed PMID:
2014–2016 Ebola Epidemic: the experience and the 27726073
results of the National Institute for Infectious Diseases Warner BM, Safronetz D, Kobinger GP (2016) Syrian
Lazzaro Spallanzani. Adv Exp Med Biol. [Epub ahead Hamsters as a small animal model for emerging infec-
of print] PubMed PMID: 27864803 tious diseases: advances in immunologic methods.
Nisii C, Grunow R, Brave A, Ippolito G, Jacob D, Jureen Adv Exp Med Biol. [Epub ahead of print] PubMed
P, Bartolini B, Di Caro A; EMERGE Viral Pathogens PMID: 27722960
Working Group (2016) Prioritization of high conse- Zumla A, Heymann D, Ippolito G (2015) Be prepared:
quence viruses to improve European laboratory pre- Europe needs Ebola outbreak consortium. Nature 523
paredness for cross-border health threats. Adv Exp (7558):35
Med Biol. doi: 10.1007/5584_2016_152. [Epub
ahead of print] PubMed PMID: 28032326
Adv Exp Med Biol - Advances in Microbiology, Infectious Diseases and Public Health (2017) 6: 7–16
DOI 10.1007/5584_2016_199
# Springer International Publishing Switzerland 2017
Published online: 18 February 2017
Abstract
Natural focal diseases are caused by biological agents associated with
specific landscapes. The natural focus of such diseases is defined as any
natural ecosystem containing the pathogen’s population as an essential
component. In such context, the agent circulates independently on human
presence, and humans may become accidentally infected through contact
with vectors or reservoirs. Some viruses (i.e., tick-borne encephalitis and
Congo-Crimean hemorrhagic fever virus) are paradigmatic examples of
natural focal diseases. When environmental changes, increase of reser-
voir/vector populations, demographic pressure, and/or changes in human
behavior occur, increased risk of exposure to the pathogen may lead to
clusters of cases or even to larger outbreaks. Intervention is often not
highly cost-effective, thus only a few examples of large-scale or even
targeted vaccination campaigns are reported in the international literature.
To develop intervention models, risk assessment through disease mapping
is an essential component of the response against these neglected threats
and key to the design of prevention strategies, especially when effective
vaccines against the disease are available.
Keywords
Natural Focal Diseases • Viruses • TBE • CCHF • Vaccination
O. Ergonul
L. Busani Department of Infectious Diseases, Koç University,
Department of Veterinary and Food Safety, Istituto Istanbul, Turkey
Superiore di Sanità, Roma, Italy
G. Rezza (*)
A.E. Platonov Department of Infectious Diseases, Istituto Superiore di
Central Research Institute of Epidemiology, Moscow, Sanità, Viale Regina Elena, 299 Roma, Italy
Russia e-mail: giovanni.rezza@iss.it
7
8 L. Busani et al.
A “natural focus of an infectious disease” is a and the environment, which provides for the
concept deriving from the theory of focality of existence of the pathogen” (Korenberg 2010).
diseases, proposed by the Russian scientist Such process is a series of consecutive cycles of
Eugene Pavlovsky in 1939. According to this pathogen reservation (restriction) and spread
theory, some pathogens are associated with spe- (circulation), providing the process to be limited
cific landscapes, and the natural “focus” or in time and space by the presence of specific
“nidus” of an infectious disease is defined as conditions needed by the pathogen. Moreover,
“any natural ecosystem that contains the popula- the circulation of the pathogen in the natural
tion of a pathogen as an essential component” foci is independent on human presence, and
(Korenberg 2010). The determinant feature of human infection, with rare exceptions, is a
natural-focal diseases is that the pathogen “biological dead end” for the pathogen. The
circulates in nature independently from human interaction between pathogens and humans is an
presence. As a rule, humans beings become accidental event and does not have any coevolu-
infected when they get into the focus and have tionary consequence (WHO 2016). An outbreak
contact with the infectious vector or, in some directly connected with natural foci is actually
cases, with the reservoir host (Korenberg 2010). the sum of individual disease cases occurring in
To develop the concept of natural focality, different places independently on each other,
Pavlovsky, in his original theory, analysed tick- with infection often being acquired from one or
borne pathogens in Russia, and for such several sources not connected with other dis-
pathogens he stated that the focus of infection eased persons (Korenberg 2010). This concept
should have three critical elements: is important to distinguish zoonoses with natural
focality and human infections acquired from
1. The aetiological agent of the disease; domestic animals. Another difference between
2. vertebrate hosts playing different roles (infec- natural focal diseases and other zoonoses is the
tious and susceptible recipient hosts, relevance of the socio-ecosystem level in the
reservoirs); structure of the epidemic process, which may be
3. environmental factors enabling the circulation high for several zoonotic infections but usually
and persistence of the agent. does not play any role in case of zoonoses with
natural focality.
Starting from this original formulation related However, it should be taken into account that
to vector-borne diseases, the definition of natural biological and social factors, and increasingly
focality was applied also to non-vector-borne intensive human activities, can cause drastic
zoonoses, such as hemorrhagic fever with renal changes in the structure and functioning of para-
syndrome, Ebola (when restricted to its natural sitic systems, the frequency and forms of human
nїche), leptospirosis, and other infectious contact with natural foci, and even the pathway
diseases. Finally, natural focality for a large of pathogen transmission to humans.
group of sapronotic infections, whose agents This “basal” interpretation of the epidemic
live in soil or aquatic ecosystems, was also process in infections with natural focality
described and discussed. For some vector-borne remains unchanged. It should only be taken into
zoonoses, the concept of a focus (nidus) may be account that people themselves create conditions
implemented as well. Thus, the phenomenon of for their exposure, favouring the entrance of
natural focality is widespread, and includes many pathogens from natural ecosystems into their
natural-focal diseases with different types of immediate environment, and for their active
transmission. reproduction and amplification in this new envi-
The natural transmission of a pathogen, in the ronment. For example, epidemic outbreaks of
context of natural focality, should be considered hemorrhagic fever with renal syndrome, a typical
a “continuous interaction of the pathogen popu- zoonosis with natural focality, are usually
lation with the populations of its natural hosts associated with virus shedding by animal
How to Tackle Natural Focal Infections: From Risk Assessment to Vaccination Strategies 9
reservoirs (murine rodents) migrating to can be plotted, trying to identify the geographical
populated areas, where favourable conditions distribution of the natural foci of infection in a
for virus amplification are created when the given area. Therefore, medical geography has an
abundance of these animals reaches high values important task: evaluating the risk of epidemic
(Korenberg 2010). hazards of natural ecosystems and providing
In the past two decades, views on the diver- public health authorities with recommendations
sity, spread, and epidemic significance of necessary to prevent disease outbreaks and con-
infections with natural focality have changed duct epidemiological surveillance.
substantially all over the world. Some new
pathogens have been discovered, and periodic
epidemic manifestations of natural foci have
1 Eco-Epidemiology: How
become a matter of great concern. Moreover,
to Predict and Control
increasing human activity (e.g., intensive subur-
the Occurrence of Natural
ban construction around big cities, expansion and
Focal Infectious Diseases
growth of recreational pressure) have led to a
significant increase in contact between human
Current understanding about the global distribu-
populations and natural foci, creating favourable
tion of most infectious diseases is surprisingly
epidemiological conditions for the spread of
limited. In particular, the spatial distribution of
natural-focal diseases (Malkhazova et al. 2014).
the vast majority of natural focal diseases
The large outbreak of Ebola occurred in West
remains largely unknown and many questions
Africa from December 2013 to March 2016,
are still unsolved, mainly because of the poor
affecting three countries (Guinea, Liberia, and
knowledge of their local variations and of the
Sierra Leone), is an example of the epidemic
characteristics of the ecological niches that
potential of natural focal diseases if virus
allow the permanence of such diseases in their
properties (capacity of inter-human transmis-
natural environment. Due to their intrinsic
sion), environmental factors, and social
features, the transmission of focal diseases to
conditions concur to increase the force of infec-
humans is highly heterogeneous in space and
tion, leading to large-scale virus circulation
time. At the micro-epidemiological scale, numer-
throughout human communities. At the end of
ous factors influence the transmission dynamics
the outbreak, more than 28,000 cases and 11,000
of the diseases in endemic foci, and variations in
deaths were reported (WHO http://www.who.int/
the distribution of these factors, even in a small
csr/disease/ebola/en/).
area, can result in spatially heterogeneous trans-
Natural-focal disease prevention is one of the
mission and appearance of disease hotspots,
most challenging public health problems. Agents
where transmission intensity is higher than in
and vectors of these diseases are part of natural
the surrounding areas.
landscapes and the spread of these diseases,
There are several reasons for mapping the
which may represent a serious hazard for people,
geographical distribution of infectious diseases.
is determined by natural factors. Such factors can
Maps of disease distribution and intensity allow
be identified and described in the affected area, in
an immediate visualization of the extent and
order to identify the “hot spots” of the disease,
magnitude of the public health problem. These
which are the most suitable places for the agents
maps can also document the background level of
and vectors. As proxy of the landscape features,
the disease in order to monitor its trend and to
also historical data on biocenosis, health records
evaluate interventions. Another reason is that
of humans and other vertebrate hosts (domestic
maps may also provide information on the
and wild animals) can be used. With such infor-
factors that favour the emergence of infectious
mation, predictions on the probability that a
diseases.
given biological agent is present in a specific
area are possible. Moreover, this information
10 L. Busani et al.
scales of organisation. Macroecology animals and wildlife, and the few ecological
investigates patterns and processes at broad spa- studies on diseases with natural focality
tial, temporal and taxonomic scales, expanding (Malkhazova et al. 2014).
scientific understanding of global infectious dis- The knowledge of human distribution in many
ease ecology. In particular, it could help areas of the World remains also surprisingly
providing new insights about scaling properties poor. For many low income countries of the
across all living taxa, and new strategies for World, spatially detailed, contemporary census
mapping pathogen biodiversity and infection data do not exist. This is especially true for much
risk. Macroecology seems a useful framework of Africa, where currently available census data
to more accurately predict global patterns of are over a decade old, and at administrative
infectious disease distribution and emergence boundary levels just below national-level (Hay
(Stephens et al. 2016). Research in the relatively et al. 2005; Tatem et al. 2008). This information
new discipline of macroecology covers impor- is of significant importance for deriving
tant findings and advances in computational and populations at risk and infection movement
statistical methods explaining how estimates.
macroecological approaches can inform human Another key factor that may affect the distri-
health and conservation initiatives. The bution and the prediction of natural focal
advanced computational techniques are applied diseases, together with a large number of other
to enormous data sets to look for patterns; in the human and animal diseases, is climate change.
case of disease ecology, this kind of analysis can Species’ response to climate change are variable
help scientists understand relationships among and diverse, yet our understanding of how differ-
parasites, hosts and their environments. ent responses (e.g. physiological, behavioural,
Indeed, the development of the principles and demographic) relate and how they affect relevant
methods of synthesizing information from differ- population parameters (e.g. population persis-
ent sources, including geography, to obtain new tence) is lacking. Much of the research on
knowledge about the spatial distribution patterns responses to climate change does not consider
of natural-focal diseases using new approaches is how population size, population growth rate, or
a research interest. The scientific and methodo- extinction risk varies as a function of climate;
logical basis of disease mapping, using informa- consequently, the mechanisms causing climate-
tion on landscape and environment, induced population changes are still poorly
mathematical methods, and multivariable analy- understood (van de Pol et al. 2010). Such lack
sis, is well developed and under continuous of knowledge impacts on the capability to make
improvement; however, practical experience are consistent predictions of the population dynam-
extremely limited in mapping diseases at a ics of both hosts and related pathogens.
broader level (nation, area, continent).
The ability to map a disease stems largely
from the type and quality of data that are avail- 2 Natural Focal Diseases
able for mapping. The accuracy of maps is then Mapping and Control: Two
largely determined by the abundance, spatial rep- Paradigmatic Examples
resentativeness and heterogeneity of those data
(Hay et al. 2013). Detection of the hotspots of natural focal
Differences in quality and incompleteness of diseases through the different mapping
initial information make it difficult to obtain a approaches is a key action to better target control
complete picture of the distribution of natural- efforts and to reduce/stop infection transmission
focal diseases within a territory. In particular, in those areas where transmission intensity is
details on disease/pathogen presence or absence higher for several reasons. The identification of
in a given area is limited, due to the limitation of areas and human populations at risk is essential
the surveillance activity in humans, domestic for better address vaccination campaigns and
12 L. Busani et al.
other interventions. However, only few natural In mammal hosts, the prevalence of infection
focal diseases have been studied in detail is poorly investigated, especially in wildlife.
mapping their foci, and vaccines are available Domestic ruminants play a crucial role in the
for few of them. Hereby we report available life cycle of the vector ticks and the transmission
information for two important natural focal and amplification of the virus. In most livestock
viral diseases. species viremia can lasts up to 14 days, thus
immune response starts, and the antibody preva-
lence in those animals is a good indicator for the
2.1 Crimean-Congo Hemorrhagic presence of CCHFV in a region. Recent studies
Fever: A Mapping Exercise conducted in different regions of Bulgaria and
Turkey showed an overall prevalence in domes-
Crimean-Congo hemorrhagic fever (CCHF) is a tic ruminants between 26 and 57%, but in some
tick borne disease characterized by fever and areas the prevalence was up to 90% (Mertens
hemorrhagic manifestations, with fatality rates et al. 2016). The potential usefulness of small
up to 30%. The disease was initially described ruminants as indicator animals to determine the
by Russian scientists in the ‘40s, while the virus presence or absence of CCHFV in a given region
was isolated the first time in the Democratic is also highlighted by Schuster et al. (2016), who
Republic of Congo some years later. CCHF pointed out also the limited knowledge about the
virus (CCHFV) circulation has been reported mechanisms governing the dynamics of CCHFV
throughout broad regions of Africa, Europe, the circulation in a suitable habitat and the role of the
Middle East, and Asia, with a geographic distri- various animals. Such circulation is linked
bution overlapping that of the Hyalomma tick, variables like age of the animals, with
the main vectors of CCHFV. CCHFV is one of dimostration of increasing antibody prevalence
the most geographically widespread tick-borne by increasing age of the tested animal population
pathogens of medical importance and may spread (Wilson et al. 1990; Barthel et al. 2014) hus-
to new areas if globalization and climate changes bandry conditions, usage of repellents, host-
create new opportunities for virus introduction preferences of the ticks and susceptibility of ani-
and amplification in suitable ecological niches mal species and breeds for CCHFV.
(Hewson 2007) (Papa et al. 2015). Large ungulates and livestock are usually
CCHF is considered a disease with natural asymptomatic and only active testing can show
focality, since the CCHFV is maintained in infection in these species. Because the lack of
active foci through a complex cycle that involves symptoms in animals and the short life-cycle of
ixodid ticks, mainly of the genus Hyalomma Hyalomma ticks, without active virological and
(the role in nature of other tick species in the serological surveillance in animals and ticks it is
natural transmission or maintenance of CCHFV unlikely to detect infection in animals earlier
is not clearly demonstrated) and reservoir hosts than in humans. Thus, the detection of human
(e.g. wild and domestic ungulates, domestic live- cases is often the first sign of CCHFV circulation
stock), on which adult ticks feed. Also other in an area.
mammals (rodents, pets) and birds can play a Mapping of the human cases is a way to rep-
role in the spread and maintenance of the virus resent the CCHF distribution. The World Health
transmission cycle. Organization (WHO) produced maps of the dis-
Little is known about the infection rates in ease at global scale, (http://www.who.int/csr/dis
both vectors and hosts in nature. In Hyalomma ease/crimean_congoHF/Global_CCHFRisk_
ticks, prevalence of infection is estimated to be 20080918.png?ua¼1), but this map represents
about 5%, but large geographical variability merely the reported occurrence of human disease
exists, due to local environmental conditions, rather than the distribution of the virus. This is
and to presence and abundance of the different due to the characteristic of the surveillance
types of hosts. (capacity to detect human cases in different
How to Tackle Natural Focal Infections: From Risk Assessment to Vaccination Strategies 13
countries/areas, underreporting, underdiagnosis); carried out due to the costs and the difficulties
the disease (a variable but relevant proportion of to establish reliable surveillance activity in
cases are subclinical, and this proportion may animals, especially in wildlife. Serological
vary in different geographical areas); specific surveys in livestock have been conducted in dif-
local conditions, like in Spain, where virus circu- ferent countries, providing snapshots of the cir-
lation was detected in ticks since 2010, but no culation of the virus in domestic animals (Adam
human cases were observed until the summer of et al. 2013; Lotfollahzadeh et al. 2011).
2016 (Estrada-Peña et al. 2012; Garcı́a Rada Surveys in ticks have also been carried out to
2016). identify areas with potential virus circulation.
A new perspective on the use of occurrence Recent experience of systematic tick surveillance
data, which was firstly developed for dengue by demonstrated the recent colonization of the con-
Bhatt et al. (2013), has been then applied to tinental France by H. marginatum; this region
CCHF by Messina et al. (2015). This approach was considered free from the tick (Vial et al.
is based on the creation of a large database by 2016).
assembling contemporary data on CCHF occur- In Europe, ticks are the most important
rence together with geographical location and a vectors of human and animal infectious diseases,
suite of environmental covariates. Such data and transmit more pathogens than any other
have been collected from many different sources arthropod (Jongejan and Uilenberg 2004;
of information, including the reporting of official Colwell et al. 2011). Monitoring of ticks requires
surveillance systems, the scientific and technical integrated approach, with expertise in environ-
literature and informal online resources. New mental science and entomology as a complement
modelling approaches are then applied to the to the human and animal health competencies.
large dataset to maximise the predictive power
of occurrence data. As a result, high resolution
spatial map of the probability of occurrence of 2.2 A Vaccine for CCHF: Give
human CCHF infection can be derived at global Prevention a Chance
level (Messina et al. 2015).
An example of successful modelling approach Initial attempts to develop CCHF vaccines goes
is the prediction of CCHF expansion in Western back to the 1960s, when Soviet scientists
Palearctic made by Estrada-Peña et al. They advocated the immunization of local populations
developed a dynamic model for CCHFV trans- in endemic areas. In 1974, the Soviet vaccine
mission in western Palearctic that considered the was licensed in Bulgaria. This inactivated virus
tick vector, Hyalomma marginatum and the vaccine is the currently only available CCHFV
effects of variations in temperature and water vaccine, however its clinical efficacy was not
vapour on hte tick survival (Estrada-Peña et al. clearly demonstrated (Mousavi-Jazi et al. 2012).
2013). The main outcome was that increase of More modern approaches, such as DNA
the temperature is compatible with the spread of vaccines, recombinant viral protein-based
CCHFV in the western Palearctic, because vaccines, and virus-like particle vaccines, are
expansion of the habitat suitable for tick vectors. under development. The lack of suitable animal
According to this scenario, increased virus circu- models in the past has hampered the develop-
lation would happen in sites where high tick ment of new, preventive, and therapeutic
populations may already exist. This scenario measures. In a recent study, IFNAR-/- mice was
was confirmed by the occurrence of a human found to be highly susceptible to the Turkey-
case in Spain in 2016 (Garcı́a Rada 2016). Kelkit06 strain of CCHFV. Immunization with
Combination of surveillance in humans, host the cell culture based vaccine elicited a signifi-
animals, and vectors is much more informative cant level of protection against high dose chal-
of the distribution of the virus and the areas at lenge (1000 PPFU) with a homologous CCHFV
risk of human exposure; however, it is rarely in IFNAR-/- mice (Canakoglu et al. 2015). The
14 L. Busani et al.
Bulgarian vaccine was used in CCHFV-endemic human exposure to infected ticks. In addition,
areas of the country for military personnel and however, the establishment of new natural foci
medical and agricultural workers over 16 years of TBE virus circulation has been described in
of age. None of the vaccinated military personnel areas previously considered free of TBE. In
has contracted CCHF, and none of the vaccinated Europe, Austria had the highest recorded mor-
laboratory personnel working with CCHFV bidity for TBE, with several hundred
became infected even after occasional exposures hospitalized patients per year and several deaths
by needle (Keshtkar-Jahromi et al. 2011). How- (Kunz 2003). A vaccine against TBE became
ever, detailed information on vaccination commercially available in 1976 and was
strategies adopted to reduced the burden of dis- administered to those at higher risk (e.g., people
ease in endemic foci and their possible outcome handling the infectious virus in the laboratory
are not available. The availability of other effec- and professional people working in forests in
tive and safe vaccines would represent a great highly endemic regions). Following the evidence
opportunity and needs to be considered in pre- of a limited impact of vaccination of at risk
paredness plans and control strategies, along groups only, mass vaccination campaign
with public information and behavioral organized by the Austrian Health authorities
prevention. began in 1981. The vaccination coverage of the
Austrian population increased from 6% in 1980
to 82% in 2013 and has exceeded 90% in some of
2.3 Tick Borne Encephalitis: Vaccine the high-risk areas. The increasing vaccination
Use to Control a Natural Focal coverage led to a steady decline in the number of
Disease TBE cases, that are ten times less than the 1976,
in addition, between 2000 and 2011, an estimate
Tick-borne diseases (TBDs) are among the most of 4000 hospitalized TBE cases were prevented
rapidly expanding infections worldwide. Many by vaccination (Heinz and Kunz 2004; Heinz
new human tick-borne pathogens are discovered et al. 2013). These results have been achieved
and several novel TBDs are recognized. Increas- thanks to the high awareness among the Austrian
ing burden of TBDs shows that current available population and the large use of an effective and
public health interventions and approaches are well-tolerated vaccine (Kunz 2002). However, it
not effective enough. Vaccination could be a could be challenging to maintain a high vaccina-
highly cost-effective intervention for preventing tion coverage in the future. Moreover,
TBDs (Šmit and Postma 2016). Among TBDs for recommendations to people visiting affected
which vaccines are currently available, tick- areas should be delivered, since pathogens and
borne encephalitis (TBE) is one of the most vectors are still there.
widespread in Europe. TBE can affect the central
nervous system, which may result in long-term/
permanent neurological sequelae or even death 3 Conclusions
(Dumpis et al. 1999). At the European level, TBE
presents an increasing public health concern with The importance of natural focal diseases has
vaccination against TBE less widely used than been largely neglected for a long time. However,
possible to reduce the disease burden (Šmit and the expansion of foci characterized by intense
Postma 2016). TBE incidence shows strong viral activity, even in previously free areas, has
annual variations as well as long fluctuations raised the attention on this threat. Viral diseases
over time in affected countries, and an overall like CCHF and TBE, initially restricted into
upsurge has been reported in certain parts of small geographical niches, have now an impor-
Europe. These changes have been related to cli- tant impact on human health in several areas of
matic, ecological, environmental and socioeco- the world. In some cases, although it may appear
nomic factors that can lead to an increased risk of paradoxical, mass vaccination campaigns have
How to Tackle Natural Focal Infections: From Risk Assessment to Vaccination Strategies 15
been successfully used to prevent and control western Palearctic. J Appl Microbiol 114:278–286.
focal diseases. However, mapping the areas of doi:10.1111/jam.12039
Garcı́a Rada A (2016) First outbreak of Crimean-Congo
activity of biological agents causing natural focal haemorrhagic fever in western Europe kills one man in
diseases, and assessing the population effect of Spain. BMJ 354:i4891
interventions, especially vaccines, is the best Grinnell J (1917) The niche-relationships of the
strategy to better address interventions against California thrasher. The Auk 34:427–433.
doi:10.2307/4072271
these emerging infections. Hay SI, Noor AM, Nelson A et al (2005) The accuracy of
human population maps for public health application.
Tropical Med Int Health 10:1073–1086. doi:10.1111/
j.1365-3156.2005.01487.x
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Adv Exp Med Biol - Advances in Microbiology, Infectious Diseases and Public Health (2017) 6: 17–33
DOI 10.1007/5584_2016_136
# Springer International Publishing Switzerland 2016
Published online: 28 September 2016
Abstract
Since the 1990s, the threat of influenza viruses to veterinary and human
public health has increased. This coincides with the larger global
populations of poultry, pigs, and people and with changing ecological
factors. These factors include the redistribution of the human population
to cities, rapid mass transportation of people and infectious agents,
increased global land use, climate change, and possible changes in viral
ecology that perpetuate highly pathogenic influenza viruses in the aquatic
bird reservoir. The emergence of H5N1, H7N9, and H9N2 subtypes of
influenza A virus and the increased genetic exchange among influenza
viruses in wild aquatic birds, domestic poultry, swine, and humans pose a
continuing threat to humanity. Here we consider the fundamental and
practical knowledge of influenza A viruses at the human–animal
interfaces to facilitate the development of novel control strategies and
modified agricultural practices that will reduce or prevent interspecies
transmission.
Keywords
Avian influenza • H5N1 • H7N9 • Zoonosis
17
18 I. Donatelli et al.
Poultry
Dogs
Pigs
Horses
Aquatic birds
Humans
Fig. 1 Schematic illustration of influenza A virus cross- A viruses. The boxes indicate the species most likely
species transmission. Solid black lines indicate inter- involved in the emergence of zoonotic viruses with pan-
species transmission events. The circle includes the wild demic potential. Influenza viruses have been isolated from
aquatic birds that are the natural reservoir of most influenza bats but their role in interspecies transmission is not known
possess a host cell–derived lipid envelope, which Recurrent annual influenza epidemics in humans
contains transmembrane glycoproteins HA and are the consequence of this gradual, progressive
NA and matrix proteins (M1 and M2) and antigenic variation. Antigenic shift involves
surrounds the 8 ribonucleoprotein (RNP) major antigenic changes by introducing a novel
complexes. Each RNP complex contains a single HA and/or NA subtype into the immunologically
RNA segment encapsulated by the nucleoprotein naı̈ve human population, which leads to a pan-
(NP) and the 3 polymerase proteins (PB1, PB2, demic. This event is caused by reassortment,
and PA) (Arranz et al. 2012; Noda et al. 2006). typically between human and avian viruses in
HA, which is responsible for virus attachment to an intermediate host or by direct transmission
the host cell, and NA, which assists virus matura- of avian or swine influenza viruses to humans
tion and release by acting as a sialidase, are the (Medina and Garcia-Sastre 2011; Horimoto and
major targets of the humoral immune response Kawaoka 2005) (Fig. 1).
(Wright et al. 2007).
Influenza A viruses are continuously
evolving, and 2 key mechanisms contribute to 3 Molecular Determinants
their variability: antigenic drift and antigenic of Host-Range Restriction
shift. Antigenic drift is the accumulation of and Pathogenesis
mutations resulting from the infidelity of the
virus-encoded polymerase; thus, genetic variants Influenza A viruses display host-range specific-
with selective advantages to escape the host’s ity; however, viruses from the wild bird reservoir
immune response result (Ferguson et al. 2003). sporadically infect humans. For this to occur,
20 I. Donatelli et al.
reassortment events or evolutionary adaptation Specific amino acid residues at the receptor-
of viral molecular determinants in an intermedi- binding pocket of the HA mediate this apparent
ate host are needed for the virus to acquire host preference, and as few as 1 amino acid
mutations that allow its transmission to humans. mutation can significantly change receptor-
If this happens, zoonotic diseases can occur binding specificity and influence virulence. In
through direct contact with infected animals, as particular, amino acid changes of glutamine-to-
frequently described for H5, H7, and H9 viruses leucine at position 226 (Q226L) and glycine-to-
(Horimoto and Kawaoka 2005; Kuiken serine at position 228 (G228S) affect these traits
et al. 2006). Nonetheless, zoonotic influenza in the H2 and H3 virus subtypes, and changes of
viruses usually cause self-limiting illness in glutamic acid–to–aspartic acid at position
humans, and additional mutations are required 190 (E190D) and aspartic acid–to-glycine at
for them to become transmissible between position 225 (D225G) change the receptor-
mammals via respiratory droplets (Neumann binding affinity of the H1 virus subtype from
and Kawaoka 2015; de Graaf and Fouchier avian-to-human receptors (Rogers and Paulson
2014). Although it is a rare event, when this 1983; Matrosovich et al. 2000; Glaser
happens, worldwide spread and introduction of et al. 2005). Moreover, the distribution of the
a novel virus into the naı̈ve human population receptor type also varies by tissue location,
will cause a pandemic. Major determinants in the including upper versus lower respiratory tract,
host-range restriction and pathogenicity of these cell type, and species. In humans, SA-α2,3 is
viruses have been identified and are described found on certain alveolar cells, and the D225G
below, though additional studies are needed to substitution in HA of influenza H1N1pdm09
fully understand all of the adaptive mutations virus, which was observed in severe and fatal
that contribute to the transmission and establish- cases, enables the infection of ciliated bronchial
ment of new influenza virus lineages. cells in the lower respiratory tract by this virus
and by viral strains of avian origin (Shinya
et al. 2006; Yamada et al. 2006; Kilander
3.1 Hemagglutinin and Receptor- et al. 2010; Chutinimitkul et al. 2010). Neverthe-
Binding Specificity less, the SA-α2,6 receptor–binding preference is
considered essential for an influenza virus to
The viral HA is most likely the major host- infect and spread easily among humans; thus,
restriction factor that limits infection and inter- this preference limits avian viruses from trans-
species transmission because the cell receptor– mitting from birds to humans. Recent H5N1
binding requirements of the protein are deter- avian isolates from Egypt also bind SA-α2,6,
mined by the sialyl sugar structures on and the appearance of this sublineage in the
glycoproteins or glycolipids, which are on the local bird population has been correlated with
cell surface and differ across species (Klenk an increase in the bird-to-human transmission
et al. 2013; Imai and Kawaoka 2012; de Graaf efficiency, and thus with an increase in human
and Fouchier 2014). The most common form of H5N1 virus infections (Watanabe et al. 2011).
SA is the N-acetylneuraminic acid with an α2,3 Moreover, the H7N9 viruses that emerged in
linkage or an α2,6 linkage to galactose, herein China in 2013 possess the avian-type residue at
reported as SA-α2,3 and SA-α2,6, respectively. position 228, but the human virus–type Q226L
Human influenza A viruses preferentially recog- substitution, which confers a dual avian/human
nize SA-α2,6, which predominates on ciliated virus receptor–binding specificity (Gao
epithelial cells that line the upper respiratory et al. 2013; Shi et al. 2013). Although this most
tract. Most avian influenza A viruses preferen- likely explains the efficient transmission of these
tially recognize SA-α2,3, which predominates on viruses through direct contact, which has been
epithelial cells in the intestine and respiratory seen in the ferret and guinea pig models, these
tracts of wild birds and domestic birds. viruses still require additional adaptive mutations
Human–Animal Interface: The Case for Influenza Interspecies Transmission 21
for sustained airborne transmission between subsequently releases viral RNP complexes into
mammals (Watanabe et al. 2013, Zhu the cytoplasm. To that end, mature HA must be
et al. 2013; Belser et al. 2013; Zhang cleaved into 2 subunits, HA1 and HA2, by tissue-
et al. 2013; Richard et al. 2013). specific proteases (Klenk and Garten 1994). The
Recent evidence shows that the acquisition of cleavage site of the HA of human seasonal influ-
human-type receptor–binding specificity by enza A viruses is composed of a single arginine
avian viruses requires compensatory mutations and trypsin-like proteases that are produced by
in the stem region of HA to guarantee HA stabil- respiratory cells to recognize and cleave this
ity and the optimal pH for fusion and thus deter- motif. Most avian viruses also possess 1–2
mine virus transmissibility (Imai et al. 2012; basic amino acids at the cleavage site, and virus
Herfst et al. 2012). Importantly, amino acid replication is restricted to the intestinal and respi-
substitutions that lower the pH threshold for ratory tracts, thus causing mild or subclinical
fusion may increase the replication of infection in poultry. For this reason, these viruses
A/Vietnam/1203/2004 (H5N1) in the upper are referred to as “low-pathogenic” avian influ-
respiratory tract of ferrets and play a role in enza viruses. In contrast, the HAs of highly path-
airborne transmission between mammals but ogenic avian influenza viruses (HPAIVs) of H5
only in the presence of an appropriate human- and H7 subtypes that emerge in gallinaceous
type receptor–binding specificity (Zaraket poultry contain a polybasic cleavage-site motif
et al. 2013). More than 70 mutations in H1, H2, that can be cleaved by ubiquitous proteases,
H3, H5, and H7 HAs that affect this phenomenon thereby causing severe systemic infections and
have been described, which highlights how com- death in those species (Horimoto et al. 1994).
plex these processes can be (Russell 2014). Although HA cleavability represents a major vir-
HA glycosylation also affects a variety of ulence determinant of avian influenza viruses, its
biological properties, including receptor-binding role in mammals is still unclear, as none of the
specificity. In particular, the loss of a glycosyla- human viruses possess this polybasic motif.
tion site at position 158–160 in the HA of H5N1 Although HA binds SA-containing receptors
facilitates virus binding to the human-type recep- on target cells to initiate virus infection, NA
tor (Wang et al. 2010). This site is crucial for facilitates the release of virus particles by cleav-
H5N1 virus virulence in mice and for airborne ing the SA residues from the cell membrane.
transmission between mammals (Imai Thus, a functional balance between the
et al. 2012; Herfst et al. 2012; Gao et al. 2009). HA-mediated receptor binding and fusion and
Moreover, Neumann et al. (2012) recently the NA-mediated sialidase activity is required
reported that H5N1 viruses isolated from humans for efficient virus replication (Baum and Paulson
in Egypt lack this glycosylation site, which may 1991; Castrucci and Kawaoka 1993). In-frame
contribute to mammalian transmissibility of deletions in the stalk region of the NA are fre-
avian H5 viruses. The loss of this glycosylation quently found in viruses isolated from poultry,
site is also reported in H7N9 viruses, thus upon transmission from wild waterfowl, and the
supporting the virus ability to efficiently infect shortened stalk length of NA is associated with
humans (Kageyama et al. 2013). enhanced replication in the intestine and respira-
tory tract of those species (Campitelli et al. 2004;
Li et al. 2011; Zhou et al. 2009). Recent experi-
3.2 Other Virulence Determinants mental findings suggest that this motif also
influences influenza virus transmission
Factors other than receptor specificity influence (Blumenkrantz et al. 2013).
host susceptibility and the pathogenicity of avian Polymerase activity also determines the host
influenza viruses. After a virus particle attaches restriction of influenza viruses, and some adap-
to the cell receptor and is internalized into an tive mutations must occur during replication in
endosome, the fusogenic activity of HA mammals for an avian influenza virus to
22 I. Donatelli et al.
overcome this restriction. In particular, PB2 virulence of the HPAI H5N1 virus in mice (Seo
protein plays a key role in influenza virulence et al. 2002). Several other amino-acid
and adaptation of avian influenza viruses to substitutions and the presence of a PDZ-ligand
growth at 37 C (the temperature of the mamma- domain at the C terminus of NS1 enhance viral
lian respiratory tract). A glutamic acid–to–lysine replication and thus act as determinants of viru-
mutation at position 627 (E627K) enables poly- lence (Jackson et al. 2008; Twu et al. 2007).
merase activities and viral replication in In summary, several molecular factors may
mammals (Subbarao et al. 1993; Hatta contribute to pathogenesis, host-range restric-
et al. 2007). Thus, this mutation is frequently tion, and transmission of influenza A viruses.
selected during replication of avian viruses in Wild waterfowl are the main reservoir of most
humans and poultry. In addition, an aspartic influenza A viruses, and acquisition of the adap-
acid–to–asparagine mutation at position tive mutations described above, during circula-
701 (D701N) and a threonine-to-alanine substi- tion in terrestrial poultry, may facilitate
tution at position 271 (T271A) of PB2 affect the transmission to humans. Importantly, viruses
replicative ability of avian viruses and are isolated from domestic poultry have low affinity
involved in influenza virus adaptation and trans- for SA-α2,3 compared to that of viruses isolated
missibility to novel hosts (Li et al. 2005; Bussey from wild aquatic birds, suggesting a role of
et al. 2010; Zhou et al. 2013). Several studies these species in the emergence of new influenza
have shown the role of PB2 in influenza virus viruses (Kimble et al. 2010; Perez et al. 2003;
transmissibility and replacement of the key PB2 Wan and Perez 2006; Costa et al. 2012). In addi-
residues in the 2009 pandemic H1N1 virus, tion, pigs have both human-type and avian-type
H5N1 strains, or the 1918 pandemic H1N1 has receptors on their tracheal epithelial cells, and
been directly related to higher replication in the pig’s role in the emergence of novel viral
mammals or respiratory-droplet transmission strains by reassortment events between viruses
(Imai et al. 2012; Herfst et al. 2012; Zhou of different animal origins has been largely
et al. 2013; Van Hoeven et al. 2009; Zhang documented (Ito et al. 1998; Smith et al. 2009).
et al. 2012). Moreover, most of the H7N9 viruses Thus, poultry, quail, and pigs may serve as nec-
isolated from humans possess the E627K muta- essary intermediate hosts for adaptation of avian
tion, whereas the strains isolated from avian spe- influenza viruses from their primary natural res-
cies maintain the typical avian residue, ervoir to humans.
suggesting that this mutation emerges during
virus replication in humans (Kageyama
et al. 2013; Lam et al. 2013; Wang et al. 2014). 4 Pandemic Influenza
Besides the mutations in key PB2 residues, those
in PB1, PA, and NP of the viral RNA polymerase Influenza pandemics occur when new strains of
complex also influence the host range of influ- influenza viruses emerge and acquire the ability
enza viruses (Gabriel et al. 2005; Watanabe to efficiently sustain human-to-human transmis-
et al. 2009; Manz et al. 2013; Yamayoshi sion to spread worldwide. Unlike regular sea-
et al. 2014; Cheng et al. 2014; Taft et al. 2015). sonal epidemics of influenza, pandemics occur
Finally, PB1-F2 and NS1 proteins contribute at unpredictable intervals and can cause high
to viral pathogenicity. In particular, PB1-F2 levels of mortality. Three influenza pandemics
induces apoptosis, and an asparagine-to-serine occurred during the twentieth century, and the
substitution at position 66 (N66S) in the 1918 emergence of a new pandemic virus completely
pandemic H1N1 and H5N1 viruses is associated replaced the previous subtype virus. The 1918
with increased virulence (Conenello et al. 2007). influenza pandemic, also known as the Spanish
NS1 antagonizes interferon production in flu, was the most severe, causing the deaths of
infected cells, and the aspartic acid–to–glutamic approximately 50–100 million people. That pan-
acid substitution at position 92 (D92E) increases demic was caused by an H1N1 subtype of
Human–Animal Interface: The Case for Influenza Interspecies Transmission 23
influenza A virus, which was probably of avian and patients with an underlying medical condi-
origin (Smith et al. 2009; Taubenberger and tion who were infected with H1N1pdm09 than
Morens 2006). Subsequent pandemics in 1957 among those infected with seasonal influenza
and 1968, also known as the Asian flu and (Domı́nguez-Cherit et al. 2009; Vaillant
Hong Kong flu, respectively, were associated et al. 2009). Since its appearance in 2009, the
with high morbidity but killed many fewer peo- H1N1pdm09 virus has established in the human
ple. The 1957 pandemic virus (H2N2) contained population and continues to circulate as a sea-
the HA, NA, and PB1 genes of avian virus origin sonal H1N1 influenza A virus. At present, the
from reassortment between human and avian frequent transmission of H1N1pdm09 virus
viruses. The 1968 pandemic virus (H3N2) from humans into swine, and the high prevalence
contained an avian HA protein of the H3 subtype of reassortants with cocirculating swine influ-
and a novel PB1 protein of avian origin enza viruses detected in pig herds in several
(Scholtissek et al. 1978; Kawaoka et al. 1989). countries continue to pose a serious threat to
In 1977, the re-emergence of H1N1 viruses public health (Simon et al. 2014; Nelson
after a 20-year absence of the virus from circula- et al. 2015).
tion, caused several outbreaks worldwide that A number of findings have suggested a role
were almost exclusively among persons younger for pigs in the emergence of pandemic influenza
than 25 years. This suggested that older viruses, as intermediate hosts in which avian
individuals were protected by pre-existing viruses adapt to mammals before they transmit
immunity (Wright et al. 2007; Nakajima to humans. The last pandemic provided clear
et al. 1978). Since then, viruses of H1N1 and evidence of the role of these animals in the epi-
H3N2 antigenic subtypes continue to circulate demiology of influenza viruses of pandemic
and cause annual epidemics in the human potential; multiple lineages of influenza A
population. viruses cocirculate in pigs and undergo frequent
In 2009, the world experienced the first pan- reassortment. Moreover, the last pandemic
demic of the twenty first century, which was highlighted the continued challenges of influ-
initially known as “the swine flu” and caused enza, in terms of unpredictability. When the
by a novel swine-origin influenza virus influenza community was alerted to a potential
(H1N1pdm09) that rapidly replaced the previ- H5N1 pandemic, the emergence of an H1N1 was
ously circulating seasonal H1N1 viruses [Novel completely unexpected. For this reason, the
Swine-Origin Influenza A (H1N1) Virus Investi- H2N2 virus that disappeared with the emergence
gation Team 2009]. Although the pandemic virus of the H3N2 virus in 1968 but continues to circu-
belonged to the H1N1 subtype, the antigenic late in aquatic birds still poses a pandemic
divergence between it and the seasonal H1N1 risk for those people born after 1968 who lack
HAs and thus the lack of cross-immunity in a H2N2-specific immunologic memory (Jones
large fraction of the human population, caused a et al. 2014). Our inability to predict the next
rapid global spread of the novel virus, resulting pandemic is a public health concern, and only a
in infection of 20–30 % of the world’s popula- continuous surveillance program to enhance pre-
tion. The H1N1pdm09 virus is genetically paredness will help mitigate the effects of such
related to viruses that circulate in pigs and was an unpredictable and potentially severe disease.
a product of reassortment of influenza virus
genes from North American and Eurasian
swine, avian, and human viruses that may have 5 Animal Influenza
occurred years before emergence in humans
(Garten et al. 2009; Smith et al. 2009). Mostly, The available information indicates that the wild
the H1N1pdm09 virus caused a relatively mild aquatic birds of the world, particularly ducks,
disease, though the numbers of hospitalizations shorebirds, and gulls (Anseriformes and
and deaths were higher among younger people Charadriiformes) are the natural reservoirs of
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to think of making another start, so we stopped where we were. It
rained hard again during the night, and several of the sheep died. At
daylight we made another attempt to reach our old M’thara camp,
and after an hour’s tramp through the thorn forest we had the
satisfaction of once more emerging upon our old camping-ground. It
was just as windy, and rather more swampy than before, but it was
surrounded by masses of restful green vegetation most grateful to
the senses after the blinding deserts and arid wastes of the Waso
Nyiro.
CHAPTER XVIII.
AN ELEPHANT HUNT AND AN ATTACK ON
MUNITHU.
Translation.
(Solo) “Where are the white men going?
(Omnes) They are going to the place of the Rendili.
(Solo) Why do they go to the place of the Rendili?
(Omnes) Because of the camels.
The white men want camels;
The white men want fat-tailed sheep;
There in the place of the Rendili is very much meat.”
The above is a specimen, with a somewhat free translation, of the
half song, half recitative, so dear to the native heart. It is generally
impromptu, and contains at times a certain dry humour and caustic
comment on current events that is quite unexpected.
Thinking that this was a good opportunity of making another trial of
baked elephant’s foot, I caused a large hole to be dug in the centre
of the camp, and a party of men were sent into the forest to gather
sufficient fuel. When the fuel arrived, an immense fire was kindled in
the hole. All day long it burnt, and in the evening we were rewarded
by the sight of a glowing pit filled to the brim with red-hot ashes. With
much trouble (the foot weighed nearly forty pounds, and the furnace
was very hot) we placed the bulky tit-bit in the ashes, and then,
building a large bonfire over it, we considered that we had done our
part of the business, and hopefully awaited developments.
Several times during the ensuing twenty-four hours El Hakim or I
carefully poked the fire with an iron bar in the endeavour to ascertain
whether the foot was cooking properly. We were absolutely certain
that, if it were not burnt to a cinder, it would be at least sufficiently
cooked, and it was in high hopes that we should at last partake of
the reputed dainty, that we disinterred it from the miniature crater on
the following evening. Alas and alack! in spite of all our toil and
trouble it was as indiarubber-like as its predecessor. Twenty-four
hours in the fire had burnt the outside and reduced the foot
somewhat in size, but the rest was as uncooked as if it had never
been near the flame. This result, however, was entirely our own fault,
as, on looking up the subject since, I find that we were entirely wrong
in our method of cooking it. The true recipe, as given by Mr. Foa,[17]
is as follows:—
“Take an elephant’s foot, preferably young and very fresh; remove
the white flesh which covers the bone, and cut it into strips the
thickness of your finger, reminding one of sticks of pâté de
guimauve. Place the appetizing strips for two days in the sun to dry,
and collect the pure fat which exudes from them in the form of clear
oil. To make the dish known as mwendo wa nzou, take one of these
strips, cut it into small pieces, put it into a saucepan containing a little
water, place it on a gentle fire, and renew the water several times.
When a jelly has formed, add to it the oil in which you have browned
a few onions, a little thyme, etc., or an equivalent aromatic plant, one
or two very strong chillies, and let it cook gently for twenty hours, still
adding water when necessary. Serve hot, with manioc flour or grated
biscuit separately.
“N.B.—This dish keeps several days, and only requires re-
warming.”
So far, so good; but as our friend N’Dominuki did not keep a
general store where we might have been able to purchase the few
onions, thyme, and chillies, etc., required, it would not have helped
us much even had we possessed this recipe at the time.
The weather now changed considerably for the worse, the fine,
clear, sunny weather of the Waso Nyiro being succeeded by heavy
rains and cold winds. These rains were nearly two months late, and
the inhabitants of M’thara were half starving in consequence; but
they came now with a vengeance, though they were too late to do
any good to the bean crop. Day after day we endured a steady
downpour, which killed off the sheep by twos and threes every night.
Of the men whom we had sent to buy food in Munithu, half returned
two days later. They reported that Bei-Munithu had refused to sell
any food, though he had more than plenty, and he had also refused
to give up the loads still in his possession. Furthermore, he had
secretly planned to attack them during the night and put them to
death. They had, however, received timely warning from a friendly
native, and so escaped; some of them coming back to us, and the
remainder going on to Zura to see how matters stood at that place.
A strange Swahili accompanied them. He had been one of Dr.
Kolb’s porters, and had been left behind, sick, at Munithu. He asked
permission to return to Nairobi with us, which we readily granted. He
also confirmed the news of Bei-Munithu’s hostility, and his
statements threw light on several little matters which had puzzled us.
It now seemed more than probable that the whole of the G’nainu
affair had been planned by that old rascal in conjunction with the
Wa’gnainu, which would explain why those people were so
completely prepared for us on the morning when we went into their
country to demand our trade goods; and why they opened the attack
without listening to what we had to say.
This Swahili was a peculiar-looking man, as at some time or other
the end of his nose had been bitten off by a hyæna. The voracious
brute had actually dashed up to where he was sleeping with other
men round a fire, and, seizing him, had tried to drag him away. His
companions awoke at his cries, and drove his assailant off with fire-
brands. When the hyæna seized him, it had bitten his face and taken
the end of his nose clean off. When rescued, he searched for and
found the piece, and, sticking it on again, he secured it with a length
of hair or fibre, which he passed over it and tied at the back of his
head; however, the piece slipped and finally grew on to his face an
inch to the left of its proper position, so that he had one nostril
complete and in its right place, while the other grew apparently out of
his cheek. He still kept the piece of fibre tied round it, and could not
be induced to remove it, though the piece of nose was firmly united
to his cheek. El Hakim offered to perform an operation in plastic
surgery and replace it in its rightful position, but he steadfastly
refused, and El Hakim did not press the point. This man turned out to
be a very good drover, and rendered valuable service in that way on
our march down country after leaving M’thara.
On the 18th October, after six days’ continuous downpour, the rain
ceased for a couple of days. Thirty of the sheep had succumbed,
and the others were very sick, as a large number of them were
suffering from the effects of the unaccustomed exposure. As the men
who had gone on to Zura had not returned, we sent Jumbi with
several men to see what had become of them. We were very
anxious to leave M’thara, but we could not venture round West Kenia
without a supply of food in hand, as game might be scarce. The
camp already commenced to smell very badly, as the rain had
soddened the earth and converted it into a bog. The quantity of meat
drying in the smoke of the fires was already six days old, and though
it was relished by the men, we ourselves found the effluvia offensive.
During our stay large numbers of natives came into camp for
medicine to cure the ulcers caused by “chiggers.” The chigger (Pulex
penetrans) is a species of flea which is in the habit of selecting the
sole of the foot or the flesh under the toe-nails as a place of
residence. Once safely ensconced under the skin, the female
chigger proceeds to lay large numbers of eggs, which are disposed
in the form of a round bag, the size of a pea. The irritation produces
a troublesome ulcer, amidst which the young larvæ appear. Some of
the natives of M’thara had lost many of their toes through these
pests. It was especially sad to see the little children with their feet
horribly lacerated, who were brought into camp for treatment by their
despairing mothers. Under El Hakim’s direction, I made a large
quantity of ointment by mixing iodoform and powdered boric acid
with hippo fat, and this was freely dispensed among the sufferers,
their expressions of gratitude amply repaying us for any trouble we
incurred in relieving them. I myself had been crippled for three weeks
on one occasion by chiggers, and was therefore in a position to feel
for the unfortunate wretches.
An “elkonono,” or native blacksmith, came into camp one day, and
we got him to manufacture a few knives and ornaments for us from
iron which we provided. He took up his quarters, together with a
couple of his wives, in a shelter which we had built for the mules. His
tools were very simple, consisting merely of a flat stone for an anvil,
and a piece of round bar iron, 1½ inches in diameter and about 8
inches in length, slightly flattened at one end, which formed his
hammer. He also possessed a very crude pair of iron pincers.
His forge, which was fed with charcoal, was formed by a hole in
the ground, into which the air was forced from bellows through a
short pipe of baked clay. The bellows consisted of a couple of
goatskins with a clay nozzle at one end. The other end was open,
the sides being sewn to two flat pieces of wood, to which small
straps were attached. One of the blacksmith’s wives thrust her
fingers through these straps, and, opening her hand and at the same
time raising her arm, she filled the goatskin with air. The hand was
then closed and the goatskin sharply compressed by a downward
stroke of the forearm, and the air contained in it was driven out of the
nozzle through the clay pipe into which it was inserted, and so into
the glowing charcoal. She worked a bellows with each hand
alternately, thus providing an almost continuous draught.
Our “elkonono” set to work and toiled away for three days “from
rosy morn till dewy eve,” and at the end of that time had
manufactured two knives and a couple of ornaments. We asked him
if it was not rather slow work, and to our great disgust he remarked,
“Yes, it is true I have not made much for you, but” (proudly) “I have
made knives for all your children!”
On inquiry we found that whenever our backs were turned, our
porters had gone to the “elkonono” either to have a knife made or
repaired, and as a result he had done ten times more work for them
than he had for us, though we were paying him and he was using
our material. Our simple “elkonono,” however, professed ignorance,
saying that he thought that in doing these little jobs for “our children”
he was serving us; which might or might not have been the truth.
A deputation from the Wa’Chanjei came into camp on the 17th of
October. They came ostensibly on a friendly visit, but really to see
how the land lay. After they had spent an hour or two in our camp,
they evidently came to the conclusion that we were quite able to take
care of ourselves, and politely and silently withdrew.
On the 19th of October the rain ceased for a while, to our
immense satisfaction. During the morning Jumbi returned from
Munithu and Zura with the remainder of the men. He had seen Bei-
Munithu and demanded that our loads should be given to him. He
was met by an insolent refusal. In addition, Bei-Munithu sent an
insulting and threatening message to the effect that “If the Wasungu
themselves came to the door of his house with their guns, he would
not give up the loads!”
Jumbi also reported that food was extremely plentiful in both
Munithu and M’thara, but the inhabitants of those places, acting
under instructions from their chiefs, point blank refused to sell us
any.
ORNAMENTS WORN BY A’KIKUYU WOMEN.
1, 2, 3, 4.Leather belts ornamented with beads and cowrie shells.
5, 6, 7, 8.Girdles of iron chain and beadwork.
9, 10.Collars of iron chain and beadwork.
11, 12, 13, Necklaces of twisted iron, brass and copper wire, with pendant
14. chain.
15, 16.Armlets of thick brass wire.
The situation was now serious, and after dinner that evening we
held a consultation to decide what was to be done. Leaving M’thara
without a supply of food was out of the question, and to stay in
M’thara was to court disaster. I therefore proposed to El Hakim that I
should proceed to Munithu on the morrow with an armed party,
leaving him in charge of the camp, and make a demonstration in
force at Munithu, and see if that would not bring old Bei Munithu to
his senses, and George volunteered to accompany me. As both El
Hakim and I considered that such a proceeding would not entail any
serious risk, he acquiesced in my proposal. We therefore determined
that El Hakim should stay in command of the camp with one or two
men—who, with himself, would, he hoped, be sufficient to defend it
should it be attacked in our absence—and that George and I, with all
the men who could be spared, should go over and endeavour to
convince Bei-Munithu and Co. that we were better as friends than
enemies.
Accordingly at noon on the following day George and I started for
Munithu. We had sixteen men armed with Sniders, but we were
terribly short of ammunition, possessing not more than seven
cartridges per man, a fact which made the undertaking rather more
hazardous. Considered afterwards, in cold blood, it seems to me to
have been foolish in the extreme to have attempted to penetrate into
a hostile country, so thickly populated as Munithu, with so few men
and so little ammunition; but at the same time there was no help for
it. Luckily, both George and I had a fair number of cartridges. I, as
usual, carried my ·303, but George, whose rifle had once or twice
missed fire, did not see the fun of risking his life with a weapon which
might fail him at a critical moment; so he carried my 20-bore shot-
gun with a supply of ball cartridges. These ball cartridges contained
2½ drams of powder, which propelled a spherical leaden bullet about
the size of an ordinary marble, and a double-barrelled gun using
them was a very ugly weapon up to a couple of hundred yards.
We pushed on till sundown, and camped at a distance from Bei-
Munithu’s village, and turned in early, as we needed all our energy
for the morrow.
FOOTNOTES:
[17] “After Big Game in Central Africa,” by Edward Foa,
F.R.G.S. (Translation from the French by Frederic Lees), 1899,
pp. 59, 60.
CHAPTER XIX.
FIGHT AT MUNITHU AND DEPARTURE FROM
M’THARA.